RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy978
(695 letters)
>gnl|CDD|234193 TIGR03388, ascorbase, L-ascorbate oxidase, plant type. Members of
this protein family are the copper-containing enzyme
L-ascorbate oxidase (EC 1.10.3.3), also called
ascorbase. This family is found in flowering plants, and
shows greater sequence similarity to a family of
laccases (EC 1.10.3.2) from plants than to other known
ascorbate oxidases.
Length = 541
Score = 221 bits (566), Expect = 4e-64
Identities = 167/587 (28%), Positives = 251/587 (42%), Gaps = 105/587 (17%)
Query: 60 DGVKRAITVVNRQLPGPAVDVCVGDHVIVNLHNGLMEESTSIHWHGHHQVDSPYMDGVPH 119
D ++ + +N Q PGP + GD ++V L N L E IHWHG Q+ +P+ DG
Sbjct: 16 DCFEKLVIGINGQFPGPTIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAG 75
Query: 120 LTQCPVPPRSTFRYKFNADSPGTHFWHSHTGSQRGDGSFGAFIIRKPRPREVHAPL-YDF 178
+TQC + P TF Y F D PGT+F+H H G QR G +G+ I+ P + P YD
Sbjct: 76 VTQCAINPGETFIYNFVVDRPGTYFYHGHYGMQRSAGLYGSLIVDVPDGEK--EPFHYDG 133
Query: 179 DLPEHIMLITDWSHVLGVEMFNAHHHADGDN--------KPPTILMNGKGRFKEFRSNAT 230
E +L++DW H + H G + +P ++L+NG+G+F S A
Sbjct: 134 ---EFNLLLSDWWHK------SIHEQEVGLSSKPMRWIGEPQSLLINGRGQFN--CSLAA 182
Query: 231 VTYTPM--------------EVFTVKQGHSYRFRIINAGYLNCPIELSIANHTLTAINSD 276
+ ++ V+ G +YR RI + L + +I H LT + +D
Sbjct: 183 KFSSTNLPQCNLKGNEQCAPQILHVEPGKTYRLRIASTTALAA-LNFAIEGHKLTVVEAD 241
Query: 277 GGDIKPISVGSIVSYAGERWDFILNATHHVG-NYWI--KMRGLMDCDERFTSAYQTAVLR 333
G ++P +V I Y+GE + +L NYWI +RG + + VL
Sbjct: 242 GNYVEPFTVKDIDIYSGETYSVLLTTDQDPSRNYWISVGVRG-----RKPNTPPGLTVLN 296
Query: 334 YEGA-PDESPAGEVDYDATRTSGTVLNPL--NTPSRQAKSTLISELSTVHS--ASSDVRL 388
Y P P + + P + +A S I +SD R+
Sbjct: 297 YYPNSPSRLP----------PTPPPVTPAWDDFDRSKAFSLAIKAAMGSPKPPETSDRRI 346
Query: 389 -----QDRANLTFYISYDFYEIDNPHFHL-STLYGFDEVKRLEKVRTPQLNHLSFRFPTF 442
Q++ N Y + I+N L T Y L ++ LN + P
Sbjct: 347 VLLNTQNKIN-----GYTKWAINNVSLTLPHTPY-------LGSLKYNLLNAFDQKPP-- 392
Query: 443 PLLSQRD-QIDESTFCSNLTTDRCADSYCECTNVVNVPLESVVELIIIDEGVAYDAN--- 498
P RD I + N TT + + + V+ +I+ + N
Sbjct: 393 PENYPRDYDIFKPPPNPNTTTG---------NGIYRLKFNTTVD-VILQNANTLNGNNSE 442
Query: 499 -HPFHLHGHPFRVVAMERVAKNITRQDVIDMDAKGLIRRNLKDAPLKDTVTVPDGGFTII 557
HP+HLHGH F V+ + R V D K NLK+ PL++TV + G+T +
Sbjct: 443 THPWHLHGHDFWVLGY---GEGKFRPGV---DEKSY---NLKNPPLRNTVVIFPYGWTAL 493
Query: 558 RFHATNPGYWLFHCHIEFHVETGMALVFKVGEHEDMAPVPKDFPTCG 604
RF A NPG W FHCHIE H+ GM +VF G + + +PK+ CG
Sbjct: 494 RFVADNPGVWAFHCHIEPHLHMGMGVVFAEGVEK-VGKLPKEALGCG 539
>gnl|CDD|234194 TIGR03389, laccase, laccase, plant. Members of this protein family
include the copper-containing enzyme laccase (EC
1.10.3.2), often several from a single plant species,
and additional, uncharacterized, closely related plant
proteins termed laccase-like multicopper oxidases. This
protein family shows considerable sequence similarity to
the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases
are enzymes of rather broad specificity, and
classification of all proteins scoring about the trusted
cutoff of this model as laccases may be appropriate.
Length = 539
Score = 217 bits (555), Expect = 1e-62
Identities = 164/569 (28%), Positives = 248/569 (43%), Gaps = 80/569 (14%)
Query: 64 RAITVVNRQLPGPAVDVCVGDHVIVNLHNGLMEESTSIHWHGHHQVDSPYMDGVPHLTQC 123
++I VN + PGP + GD VIVN+ N + + + +IHWHG Q+ + + DG ++TQC
Sbjct: 22 KSILTVNGKFPGPTLYAREGDTVIVNVTNNV-QYNVTIHWHGVRQLRNGWADGPAYITQC 80
Query: 124 PVPPRSTFRYKFN-ADSPGTHFWHSHTGSQRGDGSFGAFIIRKPRPREVHAPLYDFDLPE 182
P+ P ++ Y F GT +WH+H R +GA +I Y F P+
Sbjct: 81 PIQPGQSYVYNFTITGQRGTLWWHAHISWLRAT-VYGAIVILPKPGVP-----YPFPKPD 134
Query: 183 HIMLITDWSHVLGVEMFNAH-----HHADGDNKPPTI----LMNGKGRFKEFRSNATVTY 233
+ I +LG E +NA + A+ P + +NG + ++ T+
Sbjct: 135 REVPI-----ILG-EWWNADVEAVINQANQTGGAPNVSDAYTINGHPGPL-YNCSSKDTF 187
Query: 234 TPMEVFTVKQGHSYRFRIINAGYLNCPIELSIANHTLTAINSDGGDIKPISVGSIVSYAG 293
TV+ G +Y RIINA LN + +IANHTLT + D KP +IV G
Sbjct: 188 ----KLTVEPGKTYLLRIINAA-LNDELFFAIANHTLTVVEVDATYTKPFKTKTIVIGPG 242
Query: 294 ERWDFILNATHHVGNYWIKMRGLMDCDERFTSAYQTAVLRYEGAPDESPAGEVDYDATRT 353
+ + +L A G Y++ R MD F + TA+L+Y+G + + +
Sbjct: 243 QTTNVLLTADQSPGRYFMAARPYMDAPGAFDNTTTTAILQYKGTSNSA----------KP 292
Query: 354 SGTVLNPLNTPSRQAKSTLISELSTVHSA--SSDVRLQDRANLTFYISYDFYEIDN-PHF 410
L N + A + ++L +++SA ++V + L F I +D P+
Sbjct: 293 ILPTLPAYNDTA--AATNFSNKLRSLNSAQYPANVPVTIDRRLFFTIGLG---LDPCPNN 347
Query: 411 HLSTLYGFDEVKRLEKVRTPQLNHLSFRFPTFPLLS----------QRDQIDESTFCSNL 460
G R +N++SF PT LL D N
Sbjct: 348 TCQGPNG----TRF----AASMNNISFVMPTTALLQAHYFGISGVFTTDFPANPPTKFNY 399
Query: 461 TTDRCADSY--CECTNVVNVPLESVVELIIIDEGVAYDANHPFHLHGHPFRVVAMERVAK 518
T ++ T VV + S VEL++ D + NHP HLHG+ F VV
Sbjct: 400 TGTNLPNNLFTTNGTKVVRLKFNSTVELVLQDTSILGSENHPIHLHGYNFFVVG-----T 454
Query: 519 NITRQDVIDMDAKGLIRRNLKDAPLKDTVTVPDGGFTIIRFHATNPGYWLFHCHIEFHVE 578
D D + NL D P ++TV VP GG+ IRF A NPG W HCH+E H
Sbjct: 455 GFGNFDP-KKDPA---KFNLVDPPERNTVGVPTGGWAAIRFVADNPGVWFMHCHLEVHTT 510
Query: 579 TGMALVFKV----GEHEDMAPVPKDFPTC 603
G+ + F V G ++ + P P D P+C
Sbjct: 511 WGLKMAFLVDNGKGPNQSLLPPPSDLPSC 539
>gnl|CDD|215324 PLN02604, PLN02604, oxidoreductase.
Length = 566
Score = 203 bits (518), Expect = 3e-57
Identities = 172/580 (29%), Positives = 257/580 (44%), Gaps = 89/580 (15%)
Query: 60 DGVKRAITVVNRQLPGPAVDVCVGDHVIVNLHNGLMEESTSIHWHGHHQVDSPYMDGVPH 119
D K+ + +N + PGP + GD VIV L N L+ E+ +IHWHG Q+ +P+ DG
Sbjct: 39 DCFKKLVITINGRSPGPTILAQQGDTVIVELKNSLLTENVAIHWHGIRQIGTPWFDGTEG 98
Query: 120 LTQCPVPPRSTFRYKFNADSPGTHFWHSHTGSQRGDGSFGAFIIRKPRPREVHAPL-YDF 178
+TQCP+ P TF Y+F D PGT+ +H+H G QR G +G+ IR PR P YD+
Sbjct: 99 VTQCPILPGETFTYEFVVDRPGTYLYHAHYGMQREAGLYGS--IRVSLPRGKSEPFSYDY 156
Query: 179 DLPEHIMLITDWSHVLGVEMFNAHHHADGD--NKPPTILMNGKGRF----------KEFR 226
D +++TDW H E D +P ++L+ GKGR+ K
Sbjct: 157 D---RSIILTDWYHKSTYEQALGLSSIPFDWVGEPQSLLIQGKGRYNCSLVSSPYLKAGV 213
Query: 227 SNATVTYTPMEVFTVKQGHSYRFRIINAGYLNCPIELSIANHTLTAINSDGGDIKPISVG 286
NAT V TV G +YR RI + L+ + I H +T + +DG ++P V
Sbjct: 214 CNATNPECSPYVLTVVPGKTYRLRISSLTALSA-LSFQIEGHNMTVVEADGHYVEPFVVK 272
Query: 287 SIVSYAGERWDFILNATHHVG-NYWIKMRGLMDCDERFTSAYQTAVLR-YEGAPDESPAG 344
++ Y+GE + ++ A NYW+ + T+ A+ Y P SP
Sbjct: 273 NLFIYSGETYSVLVKADQDPSRNYWVTTSVV---SRNNTTPPGLAIFNYYPNHPRRSPP- 328
Query: 345 EVDYDATRTSGTVLNPLNTPSRQAKSTLI-SELSTVHS--ASSD-----VRLQDRANLTF 396
SG + N + R +S I + +H +SD + Q+ N
Sbjct: 329 -----TVPPSGPLWN--DVEPRLNQSLAIKARHGYIHPPPLTSDRVIVLLNTQNEVN--- 378
Query: 397 YISYDFYEIDNPHFHLSTLYGFDEVKRLEKVRTPQL----NHLSFRFPTFPLLSQRDQID 452
Y + ++N F+L TP L +L+ F P D +
Sbjct: 379 --GYRRWSVNNVSFNLP--------------HTPYLIALKENLTGAFDQTPPPEGYDFAN 422
Query: 453 ESTFC----SNLTTDRCADSYCECTNVVNVPLESVVELIIIDEGVAYDAN---HPFHLHG 505
+ SN T+ +DS + + S V++I+ + N HP+HLHG
Sbjct: 423 YDIYAKPNNSNATS---SDS------IYRLQFNSTVDIILQNANTMNANNSETHPWHLHG 473
Query: 506 HPFRVVAMERVAKNITRQDVIDMDAKGLIRRNLKDAPLKDTVTVPDGGFTIIRFHATNPG 565
H F V+ N++ D K + NL D +K+TV V G+T +RF A NPG
Sbjct: 474 HDFWVLGYGEGKFNMSS------DPK---KYNLVDPIMKNTVPVHPYGWTALRFRADNPG 524
Query: 566 YWLFHCHIEFHVETGMALVFKVGEHEDMAPVPKDFPTCGD 605
W FHCHIE H GM +VF+ G E + +P CG+
Sbjct: 525 VWAFHCHIESHFFMGMGVVFEEGI-ERVGKLPSSIMGCGE 563
>gnl|CDD|177843 PLN02191, PLN02191, L-ascorbate oxidase.
Length = 574
Score = 196 bits (499), Expect = 1e-54
Identities = 161/565 (28%), Positives = 241/565 (42%), Gaps = 70/565 (12%)
Query: 65 AITVVNRQLPGPAVDVCVGDHVIVNLHNGLMEESTSIHWHGHHQVDSPYMDGVPHLTQCP 124
A+ VN Q PGP +D GD ++V+L N L E IHWHG Q SP+ DG +TQC
Sbjct: 43 AVMTVNGQFPGPTIDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAAGVTQCA 102
Query: 125 VPPRSTFRYKFNADSPGTHFWHSHTGSQRGDGSFGAFIIRKPR-PREVHAPLYDFDLPEH 183
+ P TF YKF + PGTHF+H H G QR G +G+ I+ + P+E YD E
Sbjct: 103 INPGETFTYKFTVEKPGTHFYHGHYGMQRSAGLYGSLIVDVAKGPKE--RLRYD---GEF 157
Query: 184 IMLITDWSH--VLGVEMFNAHHHADGDNKPPTILMNGKGRFKEFRSNATVTYTPMEVFTV 241
+L++DW H + E+ + + +IL+NG+G+F + T + + T
Sbjct: 158 NLLLSDWWHESIPSQELGLSSKPMRWIGEAQSILINGRGQFNCSLAAQFSNGTELPMCTF 217
Query: 242 KQG-------------HSYRFRIINAGYLNCPIELSIANHTLTAINSDGGDIKPISVGSI 288
K+G +YR R+ + L + L++ H L + +DG I P + I
Sbjct: 218 KEGDQCAPQTLRVEPNKTYRIRLASTTAL-ASLNLAVQGHKLVVVEADGNYITPFTTDDI 276
Query: 289 VSYAGERWDFILNATHHVG-NYWIKMRGLMDCDERFTSAYQTAVLRYEGAPDESPAGEVD 347
Y+GE + +L NY+I + G+ T A +L Y AP
Sbjct: 277 DIYSGESYSVLLTTDQDPSQNYYISV-GVRGRKPNTTQAL--TILNYVTAPASKLP---- 329
Query: 348 YDATRTSGTVLNPLNTPSRQAKSTLISELSTVHSASSDVRLQDRANL----TFYISYDFY 403
+S + P ++K+ S + S S + + R L Y +
Sbjct: 330 -----SSPPPVTPRWDDFERSKNFSKKIFSAMGSPSPPKKYRKRLILLNTQNLIDGYTKW 384
Query: 404 EIDNPHFHLSTLYGFDEVKRLEKVRTPQLNHLSFRFPTFPLLSQRDQIDESTFCSNLTTD 463
I+N L T L V+ + + P D ++ F N TT
Sbjct: 385 AINN--VSLVT----PATPYLGSVKYNLKLGFNRKSPPRSYRMDYDIMNPPPF-PNTTTG 437
Query: 464 RCADSYCECTNVVNVPLESVVELIIIDEGV---AYDANHPFHLHGHPFRVVAM-ERVAKN 519
+ P V++II + V HP+HLHGH F V+ + K
Sbjct: 438 ---------NGIYVFPFNVTVDVIIQNANVLKGVVSEIHPWHLHGHDFWVLGYGDGKFKP 488
Query: 520 ITRQDVIDMDAKGLIRRNLKDAPLKDTVTVPDGGFTIIRFHATNPGYWLFHCHIEFHVET 579
+D K NLK+ PL++T + G+T IRF NPG W FHCHIE H+
Sbjct: 489 -------GIDEKTY---NLKNPPLRNTAILYPYGWTAIRFVTDNPGVWFFHCHIEPHLHM 538
Query: 580 GMALVFKVGEHEDMAPVPKDFPTCG 604
GM +VF G + + +P + CG
Sbjct: 539 GMGVVFAEGLNR-IGKIPDEALGCG 562
>gnl|CDD|219542 pfam07732, Cu-oxidase_3, Multicopper oxidase. This entry contains
many divergent copper oxidase-like domains that are not
recognised by the pfam00394 model.
Length = 119
Score = 136 bits (344), Expect = 9e-38
Identities = 51/121 (42%), Positives = 68/121 (56%), Gaps = 4/121 (3%)
Query: 50 DCGRLHCIPADGVKRAITVVNRQLPGPAVDVCVGDHVIVNLHNGLMEESTSIHWHGHHQV 109
P G ++ I V N Q PGP + V GD V+VN+ N L E T+IHWHG Q
Sbjct: 1 TVTYGTVTPLGGTRQVIGV-NGQFPGPTIRVREGDTVVVNVTNNLDE-PTTIHWHGLRQP 58
Query: 110 DSPYMDGVPHLTQCPVPPRSTFRYKFNA-DSPGTHFWHSHTGSQR-GDGSFGAFIIRKPR 167
+P+ DGVP +TQCP+PP +F Y+F GT+++HSHT + G +GA II P
Sbjct: 59 GTPWADGVPGVTQCPIPPGESFTYRFTVKQQAGTYWYHSHTSWLQQAAGLYGAIIIEDPA 118
Query: 168 P 168
Sbjct: 119 S 119
>gnl|CDD|219541 pfam07731, Cu-oxidase_2, Multicopper oxidase. This entry contains
many divergent copper oxidase-like domains that are not
recognised by the pfam00394 model.
Length = 135
Score = 121 bits (305), Expect = 3e-32
Identities = 45/131 (34%), Positives = 58/131 (44%), Gaps = 15/131 (11%)
Query: 461 TTDRCADSYCECTNVVNVPLESVVELIIIDEGVAYDANHPFHLHGHPFRVVAMERVAKNI 520
T V+ +P VE+++ + HPFHLHGH F+V+
Sbjct: 20 NWSPDNGPPLGTTEVITLPNGDRVEIVLQNNT---MGPHPFHLHGHSFQVLGRGGGPWTP 76
Query: 521 TRQDVIDMDAKGLIRRNLKDAPLKDTVTVPDGGFTIIRFHATNPGYWLFHCHIEFHVETG 580
T NL D +DTV VP GG+ IRF A NPG WLFHCHI +H++ G
Sbjct: 77 TA------------TYNLVDPVRRDTVQVPPGGWVAIRFKADNPGPWLFHCHILWHLDQG 124
Query: 581 MALVFKVGEHE 591
M F V
Sbjct: 125 MMGQFVVDPGS 135
Score = 34.4 bits (79), Expect = 0.058
Identities = 29/110 (26%), Positives = 35/110 (31%), Gaps = 28/110 (25%)
Query: 60 DGVKRAITVVNRQLPGPAVDVCV---GDHVIVNLHNGLMEESTSIHWHGHH--------- 107
G RA + P +V GD V + L N M H HGH
Sbjct: 14 GGNDRANWSPDNGPPLGTTEVITLPNGDRVEIVLQNNTMG-PHPFHLHGHSFQVLGRGGG 72
Query: 108 ---------QVDSPYMDGVPHLTQCPVPPRSTFRYKFNADSPGTHFWHSH 148
VD D V VPP +F AD+PG +H H
Sbjct: 73 PWTPTATYNLVDPVRRDTVQ------VPPGGWVAIRFKADNPGPWLFHCH 116
>gnl|CDD|225043 COG2132, SufI, Putative multicopper oxidases [Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 451
Score = 129 bits (325), Expect = 6e-32
Identities = 79/245 (32%), Positives = 105/245 (42%), Gaps = 27/245 (11%)
Query: 53 RLHCIPADGVKRAITVVNRQLPGPAVDVCVGDHVIVNLHNGLMEESTSIHWHGHHQVDSP 112
R A G + N LPGP + V GD V ++L N L+ + TS+HWHG
Sbjct: 41 RAQLAFAPGTGATVWGYNGALPGPTIRVKKGDTVTLDLTNRLLVD-TSVHWHG--LPVPG 97
Query: 113 YMDGVPHLTQCPVPPRSTFRYKFNADSPGTHFWHSHTGSQRGDGSFGAFIIRKPRPREVH 172
MDGVP LTQ P P T Y F D PGT+++H HT Q DG GA II
Sbjct: 98 EMDGVPPLTQIPPGPGETPTYTFTQDVPGTYWYHPHTHGQVYDGLAGALIIEDENS---- 153
Query: 173 APLYDFDLPEHIMLITDWSHVLGVEMFNAHHHADGDNKPPTILMNGKGRFKEFRSNATVT 232
D E ++L DW G +++ G T+L+NG
Sbjct: 154 -EPLGVDD-EPVILQDDWLDEDGTDLYQEGPAM-GGFPGDTLLVNGA--------ILPFK 202
Query: 233 YTPMEVFTVKQGHSYRFRIINAGYLNCPIELSIANHTLTAINSDGGDIKPISVGSIVSYA 292
P V R R++NAG L++ LT I DGG + P+SV +
Sbjct: 203 AVPGGV--------VRLRLLNAGNAR-TYHLALGGGPLTVIAVDGGPLPPVSVDELYLAP 253
Query: 293 GERWD 297
GER++
Sbjct: 254 GERYE 258
Score = 81.0 bits (200), Expect = 4e-16
Identities = 33/117 (28%), Positives = 47/117 (40%), Gaps = 22/117 (18%)
Query: 473 TNVVNVPLESVVELIIIDEGVAYDANHPFHLHGHPFRVVAMERVAKNITRQDVIDMDAKG 532
+ + ++ ++ HPFHLHGH F+V++ + A
Sbjct: 356 RVTLIAKAGTRERWVLTNDT---PMPHPFHLHGHFFQVLSGDAPAP-------------- 398
Query: 533 LIRRNLKDAPLKDTVTVPDGGFTIIRFHATNPGYWLFHCHIEFHVETGMALVFKVGE 589
KDTV V G ++RF A PG W+FHCHI H + GM F V
Sbjct: 399 -----GAAPGWKDTVLVAPGERLLVRFDADYPGPWMFHCHILEHEDNGMMGQFGVVP 450
Score = 34.8 bits (80), Expect = 0.15
Identities = 19/78 (24%), Positives = 24/78 (30%), Gaps = 6/78 (7%)
Query: 76 PAVDVCVGDHVIVNLHNGLMEESTSIHWHGHH----QVDSPYMDGVPHLTQC-PVPPRST 130
+ G L N H HGH D+P P V P
Sbjct: 357 VTLIAKAGTRERWVLTNDTPM-PHPFHLHGHFFQVLSGDAPAPGAAPGWKDTVLVAPGER 415
Query: 131 FRYKFNADSPGTHFWHSH 148
+F+AD PG +H H
Sbjct: 416 LLVRFDADYPGPWMFHCH 433
>gnl|CDD|177987 PLN02354, PLN02354, copper ion binding / oxidoreductase.
Length = 552
Score = 114 bits (288), Expect = 8e-27
Identities = 129/537 (24%), Positives = 208/537 (38%), Gaps = 111/537 (20%)
Query: 61 GVKRAITVVNRQLPGPAVDVCVGDHVIVNLHNGLMEESTSIHWHGHHQVDSPYMDGVPHL 120
GV + + ++N Q PGP ++ +++++N+ N L +E + W G Q + + DGVP
Sbjct: 43 GVPQQVILINGQFPGPNINSTSNNNIVINVFNNL-DEPFLLTWSGIQQRKNSWQDGVPG- 100
Query: 121 TQCPVPPRSTFRYKFNA-DSPGTHFWHSHTGSQRGDGSFGAFIIRK----PRPREVHAPL 175
T CP+PP + F Y F D G++F++ TG R G FG + P P
Sbjct: 101 TNCPIPPGTNFTYHFQPKDQIGSYFYYPSTGMHRAAGGFGGLRVNSRLLIPVP------- 153
Query: 176 YDFDLPE--HIMLITDW---SHVLGVEMFNAHHHADGDNKPPTILMNGKGRFKEFRSNAT 230
+ PE + +LI DW SH + ++ +P +L+NGK K +
Sbjct: 154 --YADPEDDYTVLIGDWYTKSHTALKKFLDSGR---TLGRPDGVLINGKSG-KGDGKDE- 206
Query: 231 VTYTPMEVFTVKQGHSYRFRIINAGYLNCPIELSIANHTLTAINSDGGDIKPISVGSIVS 290
P+ FT+K G +YR+RI N G L + I H + + +G + S+
Sbjct: 207 ----PL--FTMKPGKTYRYRICNVG-LKSSLNFRIQGHKMKLVEMEGSHVLQNDYDSLDV 259
Query: 291 YAGERWDFILNATHHVGNYWIKMRGLMDCDERFTSAYQTA--VLRYEG----APDESPAG 344
+ G+ + ++ A +Y M RF T ++RYEG A E P
Sbjct: 260 HVGQCFSVLVTANQAPKDY------YMVASTRFLKKVLTTTGIIRYEGGKGPASPELPEA 313
Query: 345 EVDYDATRTSGTVLNPLNTPSRQAKSTLISELSTVHSASSDVRLQDRANLTFYISYDFYE 404
V + + LN Q +S R NLT +
Sbjct: 314 PVGWAWS------LN-------QFRSF-------------------RWNLTASAA----- 336
Query: 405 IDNPHFHLSTLYGFDEVKRLEKVRTPQ----------LNHLSFRFPTFPL-LSQRDQIDE 453
P+ S YG + R K+ LN +S P PL L++ + +
Sbjct: 337 --RPNPQGSYHYGKINITRTIKLVNSASKVDGKLRYALNGVSHVDPETPLKLAEYFGVAD 394
Query: 454 STFCSNLTTDRCADSYCECT---NVVNVPLESVVELIIIDEGVAYDANHPFHLHGHPFRV 510
F + D + NV+N+ + VE+I + + + +HL G+ F
Sbjct: 395 KVFKYDTIKDNPPAKITKIKIQPNVLNITFRTFVEIIFENHEKSMQS---WHLDGYSFFA 451
Query: 511 VAMERVAKNITRQDVIDMDAKGLIRRNLKDAPLKDTVTVPDGGFTIIRFHATNPGYW 567
VA+E ++ NL DA + TV V + I N G W
Sbjct: 452 VAVEPGTWTPEKRK----------NYNLLDAVSRHTVQVYPKSWAAILLTFDNAGMW 498
>gnl|CDD|132431 TIGR03390, ascorbOXfungal, L-ascorbate oxidase, fungal type. This
model describes a family of fungal ascorbate oxidases,
within a larger family of multicopper oxidases that also
includes plant ascorbate oxidases (TIGR03388), plant
laccases and laccase-like proteins (TIGR03389), and
related proteins. The member from Acremonium sp. HI-25
is characterized.
Length = 538
Score = 109 bits (274), Expect = 4e-25
Identities = 75/254 (29%), Positives = 118/254 (46%), Gaps = 18/254 (7%)
Query: 57 IPADGVKRAITVVNRQLPGPAVDVCVGDHVIVNLHNGLMEESTSIHWHGHHQVDSPYMDG 116
I R VVN PGP + + G + ++N + + + ++HWHG Q +P+ DG
Sbjct: 20 IKIACSSRYSVVVNGTSPGPEIRLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDG 79
Query: 117 VPHLTQCPVPPRSTFRY--KFNADSPGTHFWHSHTGSQRGDGSFGAFIIRKPRPREVHAP 174
P +Q P+PP F Y K G++F+HSH G Q +FG I+ P P
Sbjct: 80 TPLASQWPIPPGHFFDYEIKPEPGDAGSYFYHSHVGFQ-AVTAFGPLIVEDCEP-----P 133
Query: 175 LYDFDLPEHIMLITDW----SHVLGVEMFNAHHHADGDNKPPTILMNGKGRFKEFRSNAT 230
Y +D E I+L++D+ + + + G+ +L+NGK K F +
Sbjct: 134 PYKYD-DERILLVSDFFSATDEEIEQGLLSTPFTWSGE--TEAVLLNGKSGNKSFYAQIN 190
Query: 231 VTYTPM-EVFTVKQGHSYRFRIINAGYLNCPIELSIANH-TLTAINSDGGDIKPISVGSI 288
+ + M V V+ G +YR R I A L+ I L I +H LT I +DG KP + +
Sbjct: 191 PSGSCMLPVIDVEPGKTYRLRFIGATALSL-ISLGIEDHENLTIIEADGSYTKPAKIDHL 249
Query: 289 VSYAGERWDFILNA 302
G+R+ + A
Sbjct: 250 QLGGGQRYSVLFKA 263
Score = 51.0 bits (122), Expect = 2e-06
Identities = 39/124 (31%), Positives = 52/124 (41%), Gaps = 20/124 (16%)
Query: 483 VVELIIIDEGVAYDAN-----HPFHLHGHPFRVV--------AMERVAKNITRQDVIDMD 529
V+E++ + G N HPFH HG F + A AK V+ D
Sbjct: 421 VLEIVWQNTGSYTGPNGGVDTHPFHAHGRHFYDIGGGDGEYNATANEAKLENYTPVL-RD 479
Query: 530 AKGLIRRNLKDAPLKDTVTVPDGGFTIIRFHATNPGYWLFHCHIEFHVETGMALVFKVGE 589
L R +K P P G+ R TNPG W+ HCHI H+ GM V+ G+
Sbjct: 480 TTMLYRYAVKVVPG-----AP-AGWRAWRIRVTNPGVWMMHCHILQHMVMGMQTVWVFGD 533
Query: 590 HEDM 593
ED+
Sbjct: 534 AEDI 537
>gnl|CDD|178389 PLN02792, PLN02792, oxidoreductase.
Length = 536
Score = 95.4 bits (237), Expect = 2e-20
Identities = 75/267 (28%), Positives = 115/267 (43%), Gaps = 40/267 (14%)
Query: 57 IPADGVKRAITVVNRQLPGPAVDVCVGDHVIVNLHNGLMEESTSIHWHGHHQVDSPYMDG 116
I + R ++N Q PGP + D++++N+HN L +E + W+G H + Y DG
Sbjct: 28 ISLLTLPRRGILINGQFPGPEIRSLTNDNLVINVHNDL-DEPFLLSWNGVHMRKNSYQDG 86
Query: 117 VPHLTQCPVPPRSTFRYKFNA-DSPGTHFWHSHTGSQRGDGSFGAF-IIRKPR-PREVHA 173
V + T CP+PP + Y F D G++F+ Q+ G +G+ I PR P
Sbjct: 87 V-YGTTCPIPPGKNYTYDFQVKDQVGSYFYFPSLAVQKAAGGYGSLRIYSLPRIPVPFPE 145
Query: 174 PLYDFDLPEHIMLITDWSHVLGVEMFNAHHHA-----DGDNKPPT----ILMNGKGRFKE 224
P DF LI DW + +H DG K P +++NG+G
Sbjct: 146 PAGDFTF-----LIGDW--------YRRNHTTLKKILDGGRKLPLMPDGVMINGQG---- 188
Query: 225 FRSNATVTYTPMEVFTVKQGHSYRFRIINAGYLNCPIELSIANHTLTAINSDGGDIKPIS 284
V+Y + TV +G +YRFRI N G L + I H L I +G
Sbjct: 189 ------VSY--VYSITVDKGKTYRFRISNVG-LQTSLNFEILGHQLKLIEVEGTHTVQSM 239
Query: 285 VGSIVSYAGERWDFILNATHHVGNYWI 311
S+ + G+ + ++ NY I
Sbjct: 240 YTSLDIHVGQTYSVLVTMDQPPQNYSI 266
>gnl|CDD|215896 pfam00394, Cu-oxidase, Multicopper oxidase. Many of the proteins
in this family contain multiple similar copies of this
plastocyanin-like domain.
Length = 146
Score = 87.4 bits (217), Expect = 2e-20
Identities = 47/164 (28%), Positives = 71/164 (43%), Gaps = 27/164 (16%)
Query: 182 EHIMLITDWSHVLGVEMFN-----AHHHADGDNKPPTILMNGKGRFKEFRSNATVTYTPM 236
++++ ++DW H ++ D P +L+NGK S AT
Sbjct: 2 DYVITLSDWYHKDAKDLEKELLASGKAPTDFPPVPDAVLINGKD----GASLAT------ 51
Query: 237 EVFTVKQGHSYRFRIINAG---YLNCPIELSIANHTLTAINSDGGDIKPISVGSIVSYAG 293
TV G +YR RIIN LN SI H +T + DG + P +V S+ + G
Sbjct: 52 --LTVTPGKTYRLRIINVALDDSLN----FSIEGHKMTVVEVDGVYVNPFTVDSLDIFPG 105
Query: 294 ERWDFILNATHHVGNYWIKMRGLMDCDERFTSAYQTAVLRYEGA 337
+R+ ++ A GNYWI + F + A+LRY GA
Sbjct: 106 QRYSVLVTANQDPGNYWI--VASPNI-PAFDNGTAAAILRYSGA 146
>gnl|CDD|215536 PLN02991, PLN02991, oxidoreductase.
Length = 543
Score = 93.9 bits (233), Expect = 4e-20
Identities = 130/531 (24%), Positives = 199/531 (37%), Gaps = 108/531 (20%)
Query: 61 GVKRAITVVNRQLPGPAVDVCVGDHVIVNLHNGLMEESTSIHWHGHHQVDSPYMDGVPHL 120
GV + ++N + PGP + D++I+N+ N L +E I W G + Y DGV +
Sbjct: 44 GVAQQGILINGKFPGPDIISVTNDNLIINVFNHL-DEPFLISWSGIRNWRNSYQDGV-YG 101
Query: 121 TQCPVPPRSTFRYKFNA-DSPGTHFWHSHTGSQRGDGSFGAF-IIRKPR-PREVHAPLYD 177
T CP+PP + Y D G+ ++ G + G FGA I +P P AP D
Sbjct: 102 TTCPIPPGKNYTYALQVKDQIGSFYYFPSLGFHKAAGGFGAIRISSRPLIPVPFPAPADD 161
Query: 178 FDLPEHIMLITDWSHVLGVEMFNAHH---HADGDNK-----PPTILMNGKGRFKEFRSNA 229
+ + LI DW + +H A DN P IL+NG+G S A
Sbjct: 162 YTV-----LIGDW--------YKTNHKDLRAQLDNGGKLPLPDGILINGRG------SGA 202
Query: 230 TVTYTPMEVFTVKQGHSYRFRIINAGYLNCPIELSIANHTLTAINSDGGDIKPISVGSIV 289
T+ P G +YR RI N G N + I NHT+ + +G S+
Sbjct: 203 TLNIEP--------GKTYRLRISNVGLQN-SLNFRIQNHTMKLVEVEGTHTIQTPFSSLD 253
Query: 290 SYAGERWDFILNATHHVGNYWIKMRGLMDCDERFTSAY--QTAVLRYEGA--------PD 339
+ G+ + ++ A +Y+I + RFTS T VL Y + PD
Sbjct: 254 VHVGQSYSVLITADQPAKDYYIVV------SSRFTSKILITTGVLHYSNSAGPVSGPIPD 307
Query: 340 ESPAGEVDYD---ATRTSGTVLNPLNTPSRQAKSTLISELSTVHSASSDVRLQDRANLTF 396
+D A +T+ T P P I+ T+ A+S ++ +
Sbjct: 308 GPIQLSWSFDQARAIKTNLTASGPRPNPQGSYHYGKINITRTIRLANSAGNIEGKQRYAV 367
Query: 397 YISYDFYEIDNPHFHLSTLYGFDEVKRLEKVRTPQLNHLSFRFPTFPLLSQRDQIDESTF 456
S FY D P L+ + V + + P D+ T
Sbjct: 368 N-SASFYPADTP-LKLADYFKIAGV---------------YNPGSIP--------DQPTN 402
Query: 457 CSNLTTDRCADSYCECTNVVNVPLESVVELIIIDEGVAYDANHPFHLHGHPFRVVAMERV 516
+ T+V+ ++ VE++ + D +HL G+ F VV ME
Sbjct: 403 GAIFPV----------TSVMQTDYKAFVEIVFEN---WEDIVQTWHLDGYSFYVVGMELG 449
Query: 517 AKNITRQDVIDMDAKGLIRRNLKDAPLKDTVTVPDGGFTIIRFHATNPGYW 567
+ + V NL DA + TV V +T I N G W
Sbjct: 450 KWSAASRKVY----------NLNDAVSRCTVQVYPRSWTAIYVSLDNVGMW 490
>gnl|CDD|215113 PLN02168, PLN02168, copper ion binding / pectinesterase.
Length = 545
Score = 93.9 bits (233), Expect = 5e-20
Identities = 78/293 (26%), Positives = 127/293 (43%), Gaps = 33/293 (11%)
Query: 61 GVKRAITVVNRQLPGPAVDVCVGDHVIVNLHNGLMEESTSIHWHGHHQVDSPYMDGVPHL 120
G + + V+N PGP ++ D + VN+ N L E + W+G + + DGV
Sbjct: 42 GGNKQVIVINDMFPGPLLNATANDVINVNIFNNL-TEPFLMTWNGLQLRKNSWQDGVRG- 99
Query: 121 TQCPVPPRSTFRYKFNA-DSPGTHFWHSHTGSQRGDGSFGAFIIRKPR--PREVHAPLYD 177
T CP+ P + + Y+F D G++F+ Q+ G +GA I P P P +
Sbjct: 100 TNCPILPGTNWTYRFQVKDQIGSYFYFPSLLLQKAAGGYGAIRIYNPELVPVPFPKPDEE 159
Query: 178 FDLPEHIMLITDWSHVLGVEMFNAHHHADGDNKPPTILMNGKGRFKEFRSNATVTYTPME 237
+D+ LI DW + M + + P IL NG+G P E
Sbjct: 160 YDI-----LIGDWFYADHTVMRASLDNGHSLPNPDGILFNGRG--------------PEE 200
Query: 238 -VFTVKQGHSYRFRIINAGYLNCPIELSIANHTLTAINSDGGDIKPISVGSIVSYAGERW 296
F + G +YR RI N G C + I +H + + ++G ++ S+ + G+ +
Sbjct: 201 TFFAFEPGKTYRLRISNVGLKTC-LNFRIQDHDMLLVETEGTYVQKRVYSSLDIHVGQSY 259
Query: 297 DFILNA-THHVGNYWIKMRGLMDCDERFTSAY--QTAVLRYEGAPDESPAGEV 346
++ A T VG Y + RFT AY A++RY +P + P G +
Sbjct: 260 SVLVTAKTDPVGIY---RSYYIVATARFTDAYLGGVALIRYPNSPLD-PVGPL 308
>gnl|CDD|233432 TIGR01480, copper_res_A, copper-resistance protein, CopA family.
This model represents the CopA copper resistance protein
family. CopA is related to laccase (benzenediol:oxygen
oxidoreductase) and L-ascorbate oxidase, both
copper-containing enzymes. Most members have a typical
TAT (twin-arginine translocation) signal sequence with
an Arg-Arg pair. Twin-arginine translocation is observed
for a large number of periplasmic proteins that cross
the inner membrane with metal-containing cofactors
already bound. The combination of copper-binding sites
and TAT translocation motif suggests a mechansism of
resistance by packaging and export [Cellular processes,
Detoxification, Transport and binding proteins, Cations
and iron carrying compounds].
Length = 587
Score = 93.8 bits (233), Expect = 7e-20
Identities = 79/281 (28%), Positives = 116/281 (41%), Gaps = 52/281 (18%)
Query: 60 DGVKRAITVVNRQLPGPAVDVCVGDHVIVNLHNGLMEESTSIHWHGHHQVDSPY-MDGVP 118
G R VN +PGP + GD V + + N L E+ TSIHWHG + P+ MDGVP
Sbjct: 60 TGRARPAITVNGSIPGPLLRWREGDTVRLRVTNTLPED-TSIHWHG---ILLPFQMDGVP 115
Query: 119 HLTQCPVPPRSTFRYKFNADSPGTHFWHSHTGSQRGDGSFGAFIIRKPRPREVHAPLYDF 178
++ + P TF Y+F GT+++HSH+G Q G +G II P
Sbjct: 116 GVSFAGIAPGETFTYRFPVRQSGTYWYHSHSGFQEQAGLYGPLIIDPAEP-----DPVRA 170
Query: 179 DLPEHIMLITDWSHVLGVEMFNA-HHHADGDNK-PPTILMNGKGRFKEFR---------- 226
D EH++L++DW+ + +F A DN T+ F++ R
Sbjct: 171 D-REHVVLLSDWTDLDPAALFRKLKVMAGHDNYYKRTV----ADFFRDVRNDGLKQTLAD 225
Query: 227 -----------------SNATVTY-----TPMEVFT--VKQGHSYRFRIINAGYLNCPIE 262
+ +T TY TP +T + G R R IN +
Sbjct: 226 RKMWGQMRMTPTDLADVNGSTYTYLMNGTTPAGNWTGLFRPGEKVRLRFINGS-AMTYFD 284
Query: 263 LSIANHTLTAINSDGGDIKPISVGSIVSYAGERWDFILNAT 303
+ I LT + DG + P+SV E +D I+ T
Sbjct: 285 VRIPGLKLTVVAVDGQYVHPVSVDEFRIAPAETFDVIVEPT 325
Score = 51.4 bits (123), Expect = 1e-06
Identities = 27/89 (30%), Positives = 30/89 (33%), Gaps = 23/89 (25%)
Query: 499 HPFHLHGHPFRVVAMERVAKNITRQDVIDMDAKGLIRRNLKDAPLKDTVTVPDGGFTIIR 558
HP HLHG E Q K TV VP GG R
Sbjct: 521 HPIHLHGMWS-----ELEDGQGEFQ------------------VRKHTVDVPPGGKRSFR 557
Query: 559 FHATNPGYWLFHCHIEFHVETGMALVFKV 587
A G W +HCH+ H+E GM V
Sbjct: 558 VTADALGRWAYHCHMLLHMEAGMFREVTV 586
Score = 37.9 bits (88), Expect = 0.020
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Query: 83 GDHVIVNLHNGLMEESTSIHWHGH-HQVDSPYMDGVPHLTQCPVPPRSTFRYKFNADSPG 141
G+ + V L N M + IH HG +++ + VPP ++ AD+ G
Sbjct: 506 GERLRVVLVNDTMM-AHPIHLHGMWSELEDGQGEFQVRKHTVDVPPGGKRSFRVTADALG 564
Query: 142 THFWHSH 148
+H H
Sbjct: 565 RWAYHCH 571
>gnl|CDD|165622 PLN00044, PLN00044, multi-copper oxidase-related protein;
Provisional.
Length = 596
Score = 93.2 bits (231), Expect = 9e-20
Identities = 67/245 (27%), Positives = 109/245 (44%), Gaps = 17/245 (6%)
Query: 62 VKRAITVVNRQLPGPAVDVCVGDHVIVNLHNGLMEESTSIHWHGHHQVDSPYMDGVPHLT 121
K+ +N Q PGPA++V +++VN+ N L +E + WHG Q S + DGV T
Sbjct: 46 KKQEAIGINGQFPGPALNVTTNWNLVVNVRNAL-DEPLLLTWHGVQQRKSAWQDGVGG-T 103
Query: 122 QCPVPPRSTFRYKFNA-DSPGTHFWHSHTGSQRGDGSFGAFIIRKPRPREVHAPLYDFDL 180
C +P + Y+F D G+ F+ T R G +GA I R+V P+ F
Sbjct: 104 NCAIPAGWNWTYQFQVKDQVGSFFYAPSTALHRAAGGYGAITINN---RDV-IPI-PFGF 158
Query: 181 PEH---IMLITDWSHVLGVEMFNAHHHADGDNKPPTILMNGKG--RFKEFRSNATVTYTP 235
P+ + I DW + A D P +L+N G ++ + +TY
Sbjct: 159 PDGGDITLFIADWYARDHRALRRALDAGDLLGAPDGVLINAFGPYQYNDSLVPPGITY-- 216
Query: 236 MEVFTVKQGHSYRFRIINAGYLNCPIELSIANHTLTAINSDGGDIKPISVGSIVSYAGER 295
E V G +YRFR+ N G + + I H L + ++G + ++ + G+
Sbjct: 217 -ERINVDPGKTYRFRVHNVG-VATSLNFRIQGHNLLLVEAEGSYTSQQNYTNLDIHVGQS 274
Query: 296 WDFIL 300
+ F+L
Sbjct: 275 YSFLL 279
>gnl|CDD|178429 PLN02835, PLN02835, oxidoreductase.
Length = 539
Score = 88.9 bits (220), Expect = 2e-18
Identities = 85/306 (27%), Positives = 127/306 (41%), Gaps = 57/306 (18%)
Query: 61 GVKRAITVVNRQLPGPAVDVCVGDHVIVNLHNGLMEESTSIHWHGHHQVDSPYMDGVPHL 120
GV + + ++N Q PGP +DV D++I+NL N L ++ + W+G Q + + DGV
Sbjct: 45 GVPQQVILINGQFPGPRLDVVTNDNIILNLINKL-DQPFLLTWNGIKQRKNSWQDGVLG- 102
Query: 121 TQCPVPPRSTFRYKFNA-DSPGTHFWHSHTGSQRGDGSFGAF-IIRKPR-PREVHAPLYD 177
T CP+PP S + YKF D GT + T + G FGA + +PR P P D
Sbjct: 103 TNCPIPPNSNYTYKFQTKDQIGTFTYFPSTLFHKAAGGFGAINVYERPRIPIPFPLPDGD 162
Query: 178 FDLPEHIMLITDWSHVLGVEMFNAHHHA-----DGDNK---PPTILMNGKGRFKEFRSNA 229
F L L+ DW + H D P +L+NG+
Sbjct: 163 FTL-----LVGDW--------YKTSHKTLQQRLDSGKVLPFPDGVLINGQ---------- 199
Query: 230 TVTYTPMEVFTVKQGHSYRFRIINAGYLNCPIELSIANHTLTAINSDGGDIKPISVGSIV 289
T + F+ QG +Y FRI N G L+ + I HT+ + +G S+
Sbjct: 200 --TQS---TFSGDQGKTYMFRISNVG-LSTSLNFRIQGHTMKLVEVEGSHTIQNIYDSLD 253
Query: 290 SYAGERWDFILNATHHVGNYWIKMRGLMDCDERFTSAY--QTAVLRY-------EGAPDE 340
+ G+ ++ +Y+I RFT TAVL Y G
Sbjct: 254 VHVGQSVAVLVTLNQSPKDYYIV------ASTRFTRQILTATAVLHYSNSRTPASGPLPA 307
Query: 341 SPAGEV 346
P+GE+
Sbjct: 308 LPSGEL 313
>gnl|CDD|236810 PRK10965, PRK10965, multicopper oxidase; Provisional.
Length = 523
Score = 55.8 bits (135), Expect = 5e-08
Identities = 35/112 (31%), Positives = 47/112 (41%), Gaps = 13/112 (11%)
Query: 69 VNRQLPGPAVDVCVGDHVIVNLHNGLMEESTSIHWHGHHQVDSP-YMDGVPHLTQCPVPP 127
N L GPAV + G V V++ N L EE+T +HWHG ++ P +DG P + P
Sbjct: 70 YNGNLLGPAVRLQRGKAVTVDITNQLPEETT-LHWHG---LEVPGEVDGGPQ---GIIAP 122
Query: 128 RSTFRYKFNADSPGTHFW-----HSHTGSQRGDGSFGAFIIRKPRPREVHAP 174
F D P W H TG Q G G +I ++ P
Sbjct: 123 GGKRTVTFTVDQPAATCWFHPHQHGKTGRQVAMGLAGLVLIEDDESLKLGLP 174
Score = 41.5 bits (98), Expect = 0.001
Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 23/93 (24%)
Query: 499 HPFHLHGHPFRVVAMERVAKNITRQDVIDMDAKGLIRRNLKDAPLKDTVTVPDGGFT--I 556
HPFH+HG FR+++ R KDTV V +GG + +
Sbjct: 449 HPFHIHGTQFRILSENGKPPAAHRAG------------------WKDTVRV-EGGRSEVL 489
Query: 557 IRF-HATNPGY-WLFHCHIEFHVETGMALVFKV 587
++F H + ++ HCH+ H +TGM L F V
Sbjct: 490 VKFDHDAPKEHAYMAHCHLLEHEDTGMMLGFTV 522
>gnl|CDD|131429 TIGR02376, Cu_nitrite_red, nitrite reductase, copper-containing.
This family consists of copper-type nitrite reductase.
It reduces nitrite to nitric oxide, the first step in
denitrification [Central intermediary metabolism,
Nitrogen metabolism].
Length = 311
Score = 33.6 bits (77), Expect = 0.31
Identities = 27/87 (31%), Positives = 35/87 (40%), Gaps = 6/87 (6%)
Query: 60 DGVKRAITVVNRQLPGPAVDVCVGDHVIVNLHNGLMEESTSIHWHGHHQVDSPYMDGVPH 119
DGV + +PGP + V GD+V + L N +T H H G
Sbjct: 43 DGVTYQAMTFDGSVPGPLIRVHEGDYVELTLINP--PTNTMPHNVDFHAATGAL--GGAA 98
Query: 120 LTQCPVPPRSTFRYKFNADSPGTHFWH 146
LTQ V P T +F A PG +H
Sbjct: 99 LTQ--VNPGETATLRFKATRPGAFVYH 123
Score = 32.8 bits (75), Expect = 0.53
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Query: 546 TVTVPDGGFTIIRFHATNPGYWLFHC----HIEFHVETGMA 582
T P G +RF AT PG +++HC + +HV +GM
Sbjct: 100 TQVNP-GETATLRFKATRPGAFVYHCAPPGMVPWHVVSGMN 139
>gnl|CDD|237201 PRK12786, flgA, flagellar basal body P-ring biosynthesis protein
FlgA; Reviewed.
Length = 338
Score = 31.6 bits (72), Expect = 1.4
Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 3/92 (3%)
Query: 506 HPFRVVAMERVAKNITRQDVIDMDAKGLIRRNLKDAPLKDTVTVPDGGFTIIRFHATNPG 565
R V + R A+ + +++ + A+ L RRN +VT D F + A++ G
Sbjct: 91 SGIREVTVTRAARTVDAEEIEEQVAQALERRNGLGEAADLSVTF-DRDFQPLTLPASDSG 149
Query: 566 YWLFHCHIEFHVETGM-ALVFKVGEHEDMAPV 596
+ F +G F++ APV
Sbjct: 150 AVTPV-DVRFDPRSGRFDATFEIAPAGGAAPV 180
>gnl|CDD|213952 TIGR04339, PQQ_MSMEG_3727, Actinobacterial PQQ system protein.
Members of this protein family are restricted to members
of the Actinobacteria (Mycobacterium smegmatis,
Streptomyces hygroscopicus, Geodermatophilus obscurus,
Pseudonocardia dioxanivorans, Saccharomonospora marina,
etc) that synthesize PQQ. This small protein, 155 amino
acids long on average, is found regularly next to a much
larger protein, a PQQ-dependent oxidoreductase, and
might be a companion subunit or an accessory protein
such as chaperone involved in cofactor insertion.
Length = 151
Score = 30.2 bits (68), Expect = 2.0
Identities = 13/46 (28%), Positives = 20/46 (43%)
Query: 125 VPPRSTFRYKFNADSPGTHFWHSHTGSQRGDGSFGAFIIRKPRPRE 170
+P S N D PG +++ S G+ G G GA ++ P
Sbjct: 95 LPNHSKGTATLNLDGPGYYWYGSPIGNDEGRGLTGAIVVGGEVPPS 140
>gnl|CDD|192471 pfam10178, DUF2372, Uncharacterized conserved protein (DUF2372).
This family consists of proteins found from plants to
humans. The function is not known.
Length = 90
Score = 28.1 bits (63), Expect = 4.5
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 393 NLTFYISYDFYEIDNPHFHLSTLYGFDEV 421
++T S +D P F L G DE
Sbjct: 14 SVTPDQSKSDGPVDEPTFTTKVLLGKDEP 42
>gnl|CDD|217760 pfam03849, Tfb2, Transcription factor Tfb2.
Length = 365
Score = 29.9 bits (68), Expect = 4.6
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 273 INSDGGDIKPISVGSIVSYAGERWDFIL 300
+ SD D K + V + SYA E+W+ IL
Sbjct: 113 VPSDEPDKKLVDVAFLDSYAREKWETIL 140
>gnl|CDD|172552 PRK14061, PRK14061, unknown domain/lipoate-protein ligase A fusion
protein; Provisional.
Length = 562
Score = 29.7 bits (66), Expect = 5.7
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 10/94 (10%)
Query: 343 AGEVDYDATRTSGTVLNPLNTPSRQAKSTLISELSTVHSASSDVRLQDRANLTFYISYDF 402
AG+ +YD T ++ VLN LN A+++ ++L V +A D ++ A +
Sbjct: 315 AGKPEYDKTISTSIVLNALNALGVSAEASGRNDL-VVKTAEGDRKVSGSA---------Y 364
Query: 403 YEIDNPHFHLSTLYGFDEVKRLEKVRTPQLNHLS 436
E + FH TL ++ RL P L+
Sbjct: 365 RETKDRGFHHGTLLLNADLSRLANYLNPDKKKLA 398
>gnl|CDD|182616 PRK10647, PRK10647, ferric iron reductase involved in ferric
hydroximate transport; Provisional.
Length = 262
Score = 29.3 bits (66), Expect = 5.9
Identities = 13/23 (56%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 570 HCHIEFHVETGMALVFKVGEHED 592
H H+EFH ETG A F HED
Sbjct: 124 HFHVEFH-ETGRAACFWYDVHED 145
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.137 0.435
Gapped
Lambda K H
0.267 0.0616 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 35,763,065
Number of extensions: 3508408
Number of successful extensions: 2584
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2527
Number of HSP's successfully gapped: 44
Length of query: 695
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 591
Effective length of database: 6,324,786
Effective search space: 3737948526
Effective search space used: 3737948526
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (27.9 bits)