RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy978
(695 letters)
>1aoz_A Ascorbate oxidase; oxidoreductase(oxygen acceptor); HET: NAG; 1.90A
{Cucurbita pepo var} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB:
1aso_A* 1asp_A* 1asq_A*
Length = 552
Score = 486 bits (1253), Expect = e-165
Identities = 140/614 (22%), Positives = 224/614 (36%), Gaps = 100/614 (16%)
Query: 23 RTCTYDFHIEWYYTMSKACYDCPFNVTDCGRLHCIPADGVKRAITVVNRQLPGPAVDVCV 82
+ Y + +E+ + + + + +N Q PGP +
Sbjct: 2 QIRHYKWEVEYMF---------------------WAPNCNENIVMGINGQFPGPTIRANA 40
Query: 83 GDHVIVNLHNGLMEESTSIHWHGHHQVDSPYMDGVPHLTQCPVPPRSTFRYKFNADSPGT 142
GD V+V L N L E IHWHG Q +P+ DG ++QC + P TF Y F D+PGT
Sbjct: 41 GDSVVVELTNKLHTEGVVIHWHGILQRGTPWADGTASISQCAINPGETFFYNFTVDNPGT 100
Query: 143 HFWHSHTGSQRGDGSFGAFIIRKPRPREVHAPLYDFDLPEHIMLITDWSH--VLGVEMFN 200
F+H H G QR G +G+ I+ P + + +D E +L++DW H + E+
Sbjct: 101 FFYHGHLGMQRSAGLYGSLIV---DPPQGKKEPFHYD-GEINLLLSDWWHQSIHKQEVGL 156
Query: 201 AHHHADGDNKPPTILMNGKGRFKEFRSNATV-----------TYTPMEVFTVKQGHSYRF 249
+ +P TIL+NG+G+F + +F V +YR
Sbjct: 157 SSKPIRWIGEPQTILLNGRGQFDCSIAAKYDSNLEPCKLKGSESCAPYIFHVSPKKTYRI 216
Query: 250 RIINAGYLNCPIELSIANHTLTAINSDGGDIKPISVGSIVSYAGERWDFILNATHH-VGN 308
RI + + +I NH L + +DG ++P I Y+GE + ++ + N
Sbjct: 217 RIASTT-ALAALNFAIGNHQLLVVEADGNYVQPFYTSDIDIYSGESYSVLITTDQNPSEN 275
Query: 309 YWIKMRGLMDCDERFTSAYQTAVLRYEGAPDESPAGEVDYDATRTSGTVLNPLNTPSRQA 368
YW+ + +L Y + + +
Sbjct: 276 YWVSVGTRARHPNTPP---GLTLLNYLPNSVSKLP-----TSPPPQTPAWDDFDRSKNFT 327
Query: 369 KSTLISELSTVHSASSDVRLQDRANLTFYISYDFYEIDNPHFHLSTLYGFDEVKRLEKVR 428
+ +A + + N ++ I+
Sbjct: 328 YR--------ITAAMGSPKPPVKFNRRIFLLNTQNVING-------------------YV 360
Query: 429 TPQLNHLSFRFPTFPLLSQRDQIDESTFCSNLTTDRCADSY-----------CECTNVVN 477
+N +S P P L F N + + Y V
Sbjct: 361 KWAINDVSLALPPTPYLGAMKYNLLHAFDQNPPPEVFPEDYDIDTPPTNEKTRIGNGVYQ 420
Query: 478 VPLESVVELIIIDEGV---AYDANHPFHLHGHPFRVVAMERVAKNITRQDVIDMDAKGLI 534
+ VV++I+ + + HP+HLHGH F V+ A+
Sbjct: 421 FKIGEVVDVILQNANMMKENLSETHPWHLHGHDFWVLGYGDG----------KFSAEEES 470
Query: 535 RRNLKDAPLKDTVTVPDGGFTIIRFHATNPGYWLFHCHIEFHVETGMALVFKVGEHEDMA 594
NLK+ PL++TV + G+T IRF A NPG W FHCHIE H+ GM +VF G E +
Sbjct: 471 SLNLKNPPLRNTVVIFPYGWTAIRFVADNPGVWAFHCHIEPHLHMGMGVVFAEGV-EKVG 529
Query: 595 PVPKDFPTCGDYYN 608
+P CG
Sbjct: 530 RIPTKALACGGTAK 543
>2q9o_A Laccase-1; multicopper oxidase, 2-OXOH oxidoreductase; HET: OHI NAG
MAN GOL; 1.30A {Melanocarpus albomyces} SCOP: b.6.1.3
b.6.1.3 b.6.1.3 PDB: 3fu7_A* 3fu8_A* 3fu7_B* 1gw0_A*
2ih9_A* 2ih8_A* 3fu9_A* 3qpk_A* 3dkh_A* 3pps_A*
Length = 559
Score = 469 bits (1210), Expect = e-159
Identities = 141/615 (22%), Positives = 229/615 (37%), Gaps = 77/615 (12%)
Query: 13 CQRECIEGDTRTCTYDFHIEWYYTMSKACYDCPFNVTDCGRLHCIPADGV-KRAITVVNR 71
R C D D+ E + FN+T+ + DGV K + ++N
Sbjct: 8 SNRACW-SDGFDINTDY--EVSTPDTGVTQSYVFNLTEVDN--WMGPDGVVKEKVMLING 62
Query: 72 QLPGPAVDVCVGDHVIVNLHNGLMEESTSIHWHGHHQVDSPYMDGVPHLTQCPVPPR-ST 130
+ GP + GD V V + N L+ TSIHWHG Q D+ DG +T+CP+PP+
Sbjct: 63 NIMGPNIVANWGDTVEVTVINNLVTNGTSIHWHGIXQKDTNLHDGANGVTECPIPPKGGQ 122
Query: 131 FRYKFNADSPGTHFWHSHTGSQRGDGSFGAFIIRKPRPREVHAPLYDFDLPEHIMLITDW 190
Y++ A GT ++HSH +Q G+G G I P + YD D + ITD+
Sbjct: 123 RTYRWRARQYGTSWYHSHFSAQYGNGVVGTIQINGP-----ASLPYDID--LGVFPITDY 175
Query: 191 SHVLGVEMFNAHHHADGDNKPPTILMNGKGRFKEFRSNATVTYTPMEVFTVKQGHSYRFR 250
+ ++ + + +L+NG T+ G +R R
Sbjct: 176 YYRAADDLVHFTQNN-APPFSDNVLINGTAVN------PNTGEGQYANVTLTPGKRHRLR 228
Query: 251 IINAGYLNCPIELSIANHTLTAINSDGGDIKPISVGSIVSYAGERWDFILNATHHVGNYW 310
I+N ++S+ NHT+T I +D + ++V S+ G+R+D +++A+ NYW
Sbjct: 229 ILNTS-TENHFQVSLVNHTMTVIAADMVPVNAMTVDSLFLAVGQRYDVVIDASRAPDNYW 287
Query: 311 IKMRGLMDCD-ERFTSAYQTAVLRYEGAPDESPAGEVDYDATRTSGTVLNPLNTPSRQAK 369
+ + + A+ Y GAP P E L+ L+
Sbjct: 288 FNVTFGGQAACGGSLNPHPAAIFHYAGAPGGLPTDEGTPP---VDHQCLDTLDVRP---- 340
Query: 370 STLISELSTVHSASSDVRLQDRANLTFYISYDFYEIDNPHFHLSTLYGFDEVKRLEKVRT 429
V + R + T ++ D P F
Sbjct: 341 --------VVPRSVPVNSFVKRPDNTLPVALDLT--GTPLFV------------------ 372
Query: 430 PQLNHLSFRFPTFPLLSQRDQIDESTFCSNLTTDRCADSYCECTNVVNVPLESVVELIII 489
++N + +++ + V+ + LI
Sbjct: 373 WKVNGSDINVDWGKPIIDYILTGNTSYPVSDNI-----------VQVDAVDQWTYWLIEN 421
Query: 490 DEGVAYDANHPFHLHGHPFRVVAMERVAKNITRQDVIDMDAKGLIRRNLKDAPLKDTVTV 549
D + HP HLHGH F V+ ++Q + A L R N + P +DT +
Sbjct: 422 DPEGPFSLPHPMHLHGHDFLVLGRSPDVPAASQQRFVFDPAVDLARLNGDNPPRRDTTML 481
Query: 550 PDGGFTIIRFHATNPGYWLFHCHIEFHVETGMALVFKVGEHE----DMAPVPKDFP-TC- 603
P GG+ ++ F NPG WLFHCHI +HV G+++ F + DF C
Sbjct: 482 PAGGWLLLAFRTDNPGAWLFHCHIAWHVSGGLSVDFLERPADLRQRISQEDEDDFNRVCD 541
Query: 604 --GDYYNVDSVEDED 616
Y+ + D
Sbjct: 542 EWRAYWPTNPYPKID 556
>3pxl_A Laccase; 4-copper protein, metal-binding, oxidoreductase, type-2
Cu-D; HET: NAG BMA MAN; 1.20A {Trametes hirsuta} PDB:
3fpx_A* 3v9c_A* 3div_A* 2h5u_A* 2xyb_A* 1kya_A* 1gyc_A*
2qt6_A* 2hrg_A* 2hrh_A* 4a2f_A* 2vdz_A* 4a2d_A* 4a2e_A*
4a2g_A* 4a2h_A* 2ve0_A* 2vds_A* 2hzh_A* 3kw7_A*
Length = 499
Score = 459 bits (1182), Expect = e-156
Identities = 158/592 (26%), Positives = 229/592 (38%), Gaps = 116/592 (19%)
Query: 26 TYDFHIEWYYTMSKACYDCPFNVTDCGRLHCIPADGVKRAITVVNRQLPGPAVDVCVGDH 85
D I + DG R VVN PGP V +GD
Sbjct: 5 VADLTITD---------------------AAVSPDGFSRQAVVVNGVTPGPLVAGNIGDR 43
Query: 86 VIVNLHNGL----MEESTSIHWHGHHQVDSPYMDGVPHLTQCPVPPRSTFRYKFNA-DSP 140
+N+ + L M +STSIHWHG Q + + DG + QCP+ P +F Y F D
Sbjct: 44 FQLNVIDNLTNHTMLKSTSIHWHGFFQHGTNWADGPAFINQCPISPGHSFLYDFQVPDQA 103
Query: 141 GTHFWHSHTGSQRGDGSFGAFIIRKPRPREVHAPLYDFDLPEHIMLITDWSHVLGVEMFN 200
GT ++HSH +Q DG G F++ P + HA YD D + ++ + DW H
Sbjct: 104 GTFWYHSHLSTQYCDGLRGPFVVY--DPNDPHASRYDVDNDDTVITLADWYHTA------ 155
Query: 201 AHHHADGDNKPPTILMNGKGRFKEFRSNATVTYTPMEVFTVKQGHSYRFRIINAGYLNCP 260
A L+NGKGR + + + V V +G YRFR+++ N
Sbjct: 156 AKLGPRFPGGADATLINGKGRA------PSDSVAELSVIKVTKGKRYRFRLVSLS-CNPN 208
Query: 261 IELSIANHTLTAINSDGGDIKPISVGSIVSYAGERWDFILNATHHVGNYWIKMRGLMDCD 320
SI H LT I D + +P+ V SI +A +R+ F+L+A V NYWI+
Sbjct: 209 HTFSIDGHNLTIIEVDSVNSQPLEVDSIQIFAAQRYSFVLDANQAVDNYWIRANPNFGNV 268
Query: 321 ERFTSAYQTAVLRYEGAPDESPAGEVDYDATRTSGTVLNPLNTPSRQAKSTLISELSTVH 380
F +A+LRY+GAP P + L+PL +
Sbjct: 269 -GFDGGINSAILRYDGAPAVEPTTNQTTSVKPLNEVDLHPLVST---------------- 311
Query: 381 SASSDVRLQDRANLTFYISYDFYEIDNPHFHLSTLYGFDEVKRLEKVRTPQLNHLSFRFP 440
+ ++++F + +F +N SF P
Sbjct: 312 -PVPGAPSSGGVDKAINMAFNF---NGSNF--------------------FINGASFVPP 347
Query: 441 TFPLLSQRDQIDESTFCSNLTTDRCADSYCECTNVVNVPLESVVELIIIDEGVAYDANHP 500
T P+L Q L+ + A +V +P + +E+ A A HP
Sbjct: 348 TVPVLLQ-----------ILSGAQTAQDLLPSGSVYVLPSNASIEISFPATAAAPGAPHP 396
Query: 501 FHLHGHPFRVVAMERVAKNITRQDVIDMDAKGLIRRNLKDAPLKDTVTV---PDGGFTII 557
FHLHGH F VV G N + +D V+ G I
Sbjct: 397 FHLHGHTFAVVRSA-----------------GSTVYNYDNPIFRDVVSTGTPAAGDNVTI 439
Query: 558 RFHATNPGYWLFHCHIEFHVETGMALVFKVG--EHEDMAPVPKDF-PTCGDY 606
RF NPG W HCHI+FH+E G A+V + + + PVP+ + C Y
Sbjct: 440 RFDTNNPGPWFLHCHIDFHLEGGFAVVMAEDTPDVKAVNPVPQAWSDLCPTY 491
>3t6v_A Laccase; beta barrel, oxidoreductase; HET: CBS; 2.00A {Steccherinum
ochraceum} PDB: 3t6w_A* 3t6x_A* 3t6z_A* 3t71_A*
Length = 495
Score = 440 bits (1134), Expect = e-148
Identities = 161/591 (27%), Positives = 231/591 (39%), Gaps = 115/591 (19%)
Query: 26 TYDFHIEWYYTMSKACYDCPFNVTDCGRLHCIPADGVKRAITVVNRQLPGPAVDVCVGDH 85
D HI I DG R PGP + VGD+
Sbjct: 6 VTDLHIVN---------------------ADIVPDGFVRPAVNAGGTFPGPVIAGNVGDN 44
Query: 86 VIVNLHNGL----MEESTSIHWHGHHQVDSPYMDGVPHLTQCPVPPRSTFRYKFNA-DSP 140
+ N L M TSIHWHG Q + + DG +TQCP+ ++F Y FN
Sbjct: 45 FQIVTFNQLIECSMLVDTSIHWHGEFQKGTNWADGPAFITQCPIIVGNSFSYNFNVPGMA 104
Query: 141 GTHFWHSHTGSQRGDGSFGAFIIRKPRPREVHAPLYDFDLPEHIMLITDWSHVLGVEMFN 200
GT+++HSH +Q DG G F++ P + A LYD D I+ + DW HVL EM
Sbjct: 105 GTYWYHSHLTTQYCDGLRGPFVVY--DPNDPDANLYDVDDDTTIITLADWYHVLAKEM-- 160
Query: 201 AHHHADGDNKPPTILMNGKGRFKEFRSNATVTYTPMEVFTVKQGHSYRFRIINAGYLNCP 260
A G + L++G GR + V P+ V TV+ G YR R+++ +
Sbjct: 161 ---GAGGAITADSTLIDGLGRT-----HVNVAAVPLSVITVEVGKRYRMRLVSIS-CDPN 211
Query: 261 IELSIANHTLTAINSDGGDIKPISVGSIVSYAGERWDFILNATHHVGNYWIKMRGLMDCD 320
+ SI H +T I +DG D + ++V I +A +R+ F+LNA VGNYWI+ +
Sbjct: 212 YDFSIDGHDMTIIETDGVDSQELTVDEIQIFAAQRYSFVLNANQPVGNYWIRANPNSGGE 271
Query: 321 ERFTSAYQTAVLRYEGAPDESPAGE-VDYDATRTSGTVLNPLNTPSRQAKSTLISELSTV 379
F +A+LRY+GA P T L+PL+
Sbjct: 272 -GFDGGINSAILRYDGATTADPVTVASTVHTKCLIETDLHPLSRN---------GVPGNP 321
Query: 380 HSASSDVRLQDRANLTFYISYDFYEIDNPHFHLSTLYGFDEVKRLEKVRTPQLNHLSFRF 439
H +D L +L F +N +SF
Sbjct: 322 HQGGADCNLNL--SLGFACGNFV-----------------------------INGVSFTP 350
Query: 440 PTFPLLSQRDQIDESTFCSNLTTDRCADSYCECTNVVNVPLESVVELIIIDEGVAYDANH 499
PT P+L Q + A +V+++P S +E+ + A H
Sbjct: 351 PTVPVLLQ-----------ICSGANTAADLLPSGSVISLPSNSTIEIALPAG--AAGGPH 397
Query: 500 PFHLHGHPFRVVAMERVAKNITRQDVIDMDAKGLIRRNLKDAPLKDTVTVPDG-GFTIIR 558
PFHLHGH F V + N D +D V++ IR
Sbjct: 398 PFHLHGHDFAVSESASNST-----------------SNYDDPIWRDVVSIGGVGDNVTIR 440
Query: 559 FHATNPGYWLFHCHIEFHVETGMALVF--KVGEHEDMAPVPKDF-PTCGDY 606
F NPG W HCHI++H++ G A+VF + PVP+ + C Y
Sbjct: 441 FCTDNPGPWFLHCHIDWHLDAGFAIVFAEDIPNTASANPVPEAWSNLCPSY 491
>3sqr_A Laccase; multicopper oxidase, glycosylation, oxidoreductase; HET:
NAG BMA MAN; 1.67A {Botrytis aclada}
Length = 580
Score = 438 bits (1128), Expect = e-146
Identities = 156/624 (25%), Positives = 231/624 (37%), Gaps = 95/624 (15%)
Query: 10 KHSCQRECIEG-DTRTC--TYDFHIEWYYTMSKAC---YDCPFNVTDCGRLHCIPADGVK 63
+ + C +R+C Y WY Y +V + I DG
Sbjct: 32 RQNTTASCANSATSRSCWGEYSIDTNWYDVTPTGVTREYW--LSVEN----STITPDGYT 85
Query: 64 RAITVVNRQLPGPAVDVCVGDHVIVNLHNGLMEESTSIHWHGHHQVDSPYMDGVPHLTQC 123
R+ N +PGPA+ GD++I+++ N L TSIHWHG Q+ S DGVP +TQC
Sbjct: 86 RSAMTFNGTVPGPAIIADWGDNLIIHVTNNLEHNGTSIHWHGIRQLGSLEYDGVPGVTQC 145
Query: 124 PVPPRSTFRYKFNADSPGTHFWHSHTGSQRGDGSFGAFIIRKPRPREVHAPLYDFDLPEH 183
P+ P T YKF GT ++HSH Q GDG FG II P YD D
Sbjct: 146 PIAPGDTLTYKFQVTQYGTTWYHSHFSLQYGDGLFGPLIINGPAT-----ADYDED--VG 198
Query: 184 IMLITDWSHVLGVEMFNAHHHADGDNKPPTILMNGKGRFK--EFRSNATVTYTPMEVFTV 241
++ + DW+H E+++ LMNG F V T
Sbjct: 199 VIFLQDWAHESVFEIWDTARLG-APPALENTLMNGTNTFDCSASTDPNCVGGGKKFELTF 257
Query: 242 KQGHSYRFRIINAGYLNCPIELSIANHTLTAINSDGGDIKPISVGSIVSYAGERWDFILN 301
+G YR R+IN G ++ E +I NHTLT I +D I P + +++ G+R+D I+
Sbjct: 258 VEGTKYRLRLINVG-IDSHFEFAIDNHTLTVIANDLVPIVPYTTDTLLIGIGQRYDVIVE 316
Query: 302 ATHHVGNYWIKMRGLMDCDERFTSAYQTAVLRYEGAPDESPAGEVDYDATRTSGTVLNPL 361
A NYWI+ C +A T +LRY+ + +P + L
Sbjct: 317 ANAAADNYWIRGNWGTTCSTNNEAANATGILRYDSSSIANPTSVGTTPRGTCEDEPVASL 376
Query: 362 NTPSRQAKSTLISELSTVHSASSDVRLQDRANLTFYISYDFYEIDNPHFHLSTLYGFDEV 421
+D + L
Sbjct: 377 V--------------------------------------PHLALDVGGYSLVDE------ 392
Query: 422 KRLEKVRTPQLNHLSFRFPTFPLLSQRDQIDESTFCSNLTTDRCADSYCECTNVVNVPLE 481
+V + N+ ++ + LL +N + NVV +
Sbjct: 393 ----QVSSAFTNYFTWTINSSSLLLDWSSPTTLKIFNN------ETIFPTEYNVVALEQT 442
Query: 482 ---SVVELIIIDEGVAYDANHPFHLHGHPFRVVAMERVAKNITRQDVIDMDAKGLIRRNL 538
+ +I++ + HP HLHGH F +VA E N + + NL
Sbjct: 443 NANEEWVVYVIEDLTGFGIWHPIHLHGHDFFIVAQETDVFN---------SDESPAKFNL 493
Query: 539 KDAPLKDTVTVPDGGFTIIRFHATNPGYWLFHCHIEFHVETGMALVFKVGEHE---DMAP 595
+ P +D +P G+ I F NPG WL HCHI +H G+A+ F + M
Sbjct: 494 VNPPRRDVAALPGNGYLAIAFKLDNPGSWLLHCHIAWHASEGLAMQFVESQSSIAVKMTD 553
Query: 596 VPKDFPTC---GDYYNVDSVEDED 616
TC Y ++D
Sbjct: 554 TAIFEDTCANWNAYTPTQLFAEDD 577
>1zpu_A Iron transport multicopper oxidase FET3; ferroxidase, oxidoreduc;
HET: NAG BMA MAN NDG; 2.80A {Saccharomyces cerevisiae}
Length = 534
Score = 434 bits (1117), Expect = e-145
Identities = 127/598 (21%), Positives = 212/598 (35%), Gaps = 111/598 (18%)
Query: 24 TCTYDFHIEWYYTMSKACYDCPFNVTDCGRLHCIPADGV-KRAITVVNRQLPGPAVDVCV 82
T T+++ W Y DG+ R + N Q P P + V
Sbjct: 2 THTFNWTTGWDY---------------------RNVDGLKSRPVITCNGQFPWPDITVNK 40
Query: 83 GDHVIVNLHNGLMEESTSIHWHGHHQVDSPYMDGVPHLTQCPVPPRSTFRYKFNADS-PG 141
GD V + L NG+ +TS+H+HG Q + MDGVP LTQCP+ P ST Y F D G
Sbjct: 41 GDRVQIYLTNGMNNTNTSMHFHGLFQNGTASMDGVPFLTQCPIAPGSTMLYNFTVDYNVG 100
Query: 142 THFWHSHTGSQRGDGSFGAFIIRKPRPREVHAPLYDFDLPEHIMLITDWSH----VLGVE 197
T+++HSHT Q DG G FII+ + YD+D E + +++W H L
Sbjct: 101 TYWYHSHTDGQYEDGMKGLFIIKDD------SFPYDYDE-ELSLSLSEWYHDLVTDLTKS 153
Query: 198 MFNAHHHADGDNKPPTILMNGKGRFKEFRSNATVTYTPMEVFTVKQGHSYRFRIINAGYL 257
+ ++ + P +++N + V+ +Y RI+N G
Sbjct: 154 FMSVYNPTGAEPIPQNLIVNNTMNL---------------TWEVQPDTTYLLRIVNVG-G 197
Query: 258 NCPIELSIANHTLTAINSDGGDIKPISVGSIVSYAGERWDFILNATHHVG-NYWIKMRGL 316
I +H +T + DG + + +R+ +++ + N+ I +
Sbjct: 198 FVSQYFWIEDHEMTVVEIDGITTEKNVTDMLYITVAQRYTVLVHTKNDTDKNFAIMQKFD 257
Query: 317 MDCDERFTSAYQ---TAVLRYEGAPDESPAGEVDYDATRTSGTVLNPLNTPSRQAKSTLI 373
+ S Q T+ + Y VD L P +
Sbjct: 258 DTMLDVIPSDLQLNATSYMVYNKTAALPTQNYVDSIDNFLDDFYLQPYEKEA-------- 309
Query: 374 SELSTVHSASSDVRLQDRANLTFYISYDFYEIDNPHFHLSTLYGFDEVKRLEKVRTPQLN 433
+ + + + N + N
Sbjct: 310 --------------IYGEPDHVITVDVVMDNLKNGVNYAF------------------FN 337
Query: 434 HLSFRFPTFPLLSQRDQIDESTFCSNLTTDRCADSYCECTNVVNVPLESVVELIIIDEGV 493
++++ P P L S+ ++ Y T+ + + +VE+++ +
Sbjct: 338 NITYTAPKVPTLMT--------VLSSGDQANNSEIYGSNTHTFILEKDEIVEIVLNN--- 386
Query: 494 AYDANHPFHLHGHPFRVVAMERVAKNITRQDVIDMDAKGLIRRNLKDAPLKDTVTVPDGG 553
HPFHLHGH F+ + +R + + D + +DT+ V
Sbjct: 387 QDTGTHPFHLHGHAFQTIQRDRTYDDALGEVPHSFDPDN-HPAFPEYPMRRDTLYVRPQS 445
Query: 554 FTIIRFHATNPGYWLFHCHIEFHVETGMALVF-----KVGEHEDMAPVPKDFPTCGDY 606
+IRF A NPG W FHCHIE+H+ G+ LV + + C
Sbjct: 446 NFVIRFKADNPGVWFFHCHIEWHLLQGLGLVLVEDPFGIQDAHSQQLSENHLEVCQSC 503
>1hfu_A Laccase 1; oxidoreductase, blue multi-copper oxidase, type-2 copper
depleted, signal, glycoprotein; HET: MAN NAG NDG; 1.68A
{Coprinus cinereus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB:
1a65_A*
Length = 503
Score = 425 bits (1094), Expect = e-142
Identities = 157/593 (26%), Positives = 234/593 (39%), Gaps = 120/593 (20%)
Query: 26 TYDFHIEWYYTMSKACYDCPFNVTDCGRLHCIPADGVKRAITVVNRQLPGPAVDVCVGDH 85
+ + DG RA +VN GP + D+
Sbjct: 6 VDTMTLTN---------------------ANVSPDGFTRAGILVNGV-HGPLIRGGKNDN 43
Query: 86 VIVNLHNGL----MEESTSIHWHGHHQVDSPYMDGVPHLTQCPVPPRSTFRYKFN-ADSP 140
+N+ N L M TSIHWHG Q + + DG + QCP+ P F YKF A
Sbjct: 44 FELNVVNDLDNPTMLRPTSIHWHGLFQRGTNWADGADGVNQCPISPGHAFLYKFTPAGHA 103
Query: 141 GTHFWHSHTGSQRGDGSFGAFIIRKPRPREVHAPLYDFDLPEHIMLITDWSHVLGVEMFN 200
GT ++HSH G+Q DG G +I + HA LYD D I+ + DW H+ +
Sbjct: 104 GTFWYHSHFGTQYCDGLRGPMVIY--DDNDPHAALYDEDDENTIITLADWYHIPAPSIQG 161
Query: 201 AHHHADGDNKPPTILMNGKGRFKEFRSNATVTYTPMEVFTVKQGHSYRFRIINAGYLNCP 260
A +P L+NGKGR+ + + V+QG YR R+I+ +
Sbjct: 162 A-------AQPDATLINGKGRY------VGGPAAELSIVNVEQGKKYRMRLISLS-CDPN 207
Query: 261 IELSIANHTLTAINSDGGDIKPISVGSIVSYAGERWDFILNATHHVGNYWIKMRGLMDCD 320
+ SI H LT I DG +P +V + + G+R+ F+L+A V NYWI+ + +
Sbjct: 208 WQFSIDGHELTIIEVDGELTEPHTVDRLQIFTGQRYSFVLDANQPVDNYWIRAQPNKGRN 267
Query: 321 ER---FTSAYQTAVLRYEGAPDESPAGEVDYDATRTSGTVLNPLNTPSRQAKSTLISELS 377
F + +A+LRY GA + P + + + + L+ L P+ T
Sbjct: 268 GLAGTFANGVNSAILRYAGAANADPTTSANPNPAQLNEADLHALIDPAAPGIPT------ 321
Query: 378 TVHSASSDVRLQDRANLTFYISYDFYEIDNPHFHLSTLYGFDEVKRLEKVRTPQLNHLSF 437
++DV NL F + F +N ++
Sbjct: 322 ---PGAADV------NLRFQLG-----FSGGRF--------------------TINGTAY 347
Query: 438 RFPTFPLLSQRDQIDESTFCSNLTTDRCADSYCECTNVVNVPLESVVELIIIDEGVAYDA 497
P+ P L Q ++ + A+ +V +P VVEL++ +
Sbjct: 348 ESPSVPTLLQ-----------IMSGAQSANDLLPAGSVYELPRNQVVELVVPAGVL--GG 394
Query: 498 NHPFHLHGHPFRVVAMERVAKNITRQDVIDMDAKGLIRRNLKDAPLKDTVTVP-DGGFTI 556
HPFHLHGH F VV G N + +D V++ G
Sbjct: 395 PHPFHLHGHAFSVVRSA-----------------GSSTYNFVNPVKRDVVSLGVTGDEVT 437
Query: 557 IRFHATNPGYWLFHCHIEFHVETGMALVF--KVGEHEDMAPVPKDF-PTCGDY 606
IRF NPG W FHCHIEFH+ G+A+VF + D P ++ C Y
Sbjct: 438 IRFVTDNPGPWFFHCHIEFHLMNGLAIVFAEDMANTVDANNPPVEWAQLCEIY 490
>1v10_A Laccase; multicopper blue oxidase, oxidase; 1.7A {Rigidoporus
lignosus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3
Length = 521
Score = 422 bits (1086), Expect = e-141
Identities = 159/594 (26%), Positives = 231/594 (38%), Gaps = 114/594 (19%)
Query: 23 RTCTYDFHIEWYYTMSKACYDCPFNVTDCGRLHCIPADGV-KRAITVVNRQLPGPAVDVC 81
T D HI + DG R+ P +
Sbjct: 22 ATVALDLHILNAN---------------------LDPDGTGARSAVTAEGTTIAPLITGN 60
Query: 82 VGDHVIVNLHNGL----MEESTSIHWHGHHQVDSPYMDGVPHLTQCPVPPRSTFRYKFNA 137
+ D +N+ + L M +TSIHWHG Q + MDG + QCP+ P +F Y F
Sbjct: 61 IDDRFQINVIDQLTDANMRRATSIHWHGFFQAGTTEMDGPAFVNQCPIIPNESFVYDFVV 120
Query: 138 -DSPGTHFWHSHTGSQRGDGSFGAFIIRKPRPREVHAPLYDFDLPEHIMLITDWSHVLGV 196
GT+++HSH +Q DG GAF++ P + H LYD D ++ I DW H L
Sbjct: 121 PGQAGTYWYHSHLSTQYCDGLRGAFVVY--DPNDPHLSLYDVDDASTVITIADWYHSLST 178
Query: 197 EMFNAHHHADGDNKPPTILMNGKGRFKEFRSNATVTYTPMEVFTVKQGHSYRFRIINAGY 256
+F + A P T L+NG GR +A + + V +V+ G YRFRI++
Sbjct: 179 VLFPNPNKAP--PAPDTTLINGLGRN-----SANPSAGQLAVVSVQSGKRYRFRIVSTS- 230
Query: 257 LNCPIELSIANHTLTAINSDGGDIKPISVGSIVSYAGERWDFILNATHHVGNYWIKMRGL 316
SI H +T I DG +P++V S+ +AG+R+ ++ A VGNYWI+
Sbjct: 231 CFPNYAFSIDGHRMTVIEVDGVSHQPLTVDSLTIFAGQRYSVVVEANQAVGNYWIRANPS 290
Query: 317 MDCDERFTSAYQTAVLRYEGAPDESPAGEVDYDATRTSGTVLNPLNTPSRQAKSTLISEL 376
+ FT +A+ RY+GA P TS LN + LI +
Sbjct: 291 NGRN-GFTGGINSAIFRYQGAAVAEPT---------TSQNSGTALNE------ANLIPLI 334
Query: 377 STVHSASSDVRLQDRANLTFYISYDFYEIDNPHFHLSTLYGFDEVKRLEKVRTPQLNHLS 436
+ + D NL I + F +N
Sbjct: 335 NPGAPGNPVPGGADI-NLNLRIGRNA---TTADF--------------------TINGAP 370
Query: 437 FRFPTFPLLSQRDQIDESTFCSNLTTDRCADSYCECTNVVNVPLESVVELIIIDEGVAYD 496
F PT P+L Q L+ + V+++P V+E+ I G
Sbjct: 371 FIPPTVPVLLQ-----------ILSGVTNPNDLLPGGAVISLPANQVIEISIPGGG---- 415
Query: 497 ANHPFHLHGHPFRVVAMERVAKNITRQDVIDMDAKGLIRRNLKDAPLKDTVTVPDGG-FT 555
NHPFHLHGH F VV G N + +D V++ GG
Sbjct: 416 -NHPFHLHGHNFDVVRTP-----------------GSSVYNYVNPVRRDVVSIGGGGDNV 457
Query: 556 IIRFHATNPGYWLFHCHIEFHVETGMALVF--KVGEHEDMAPVPKDF-PTCGDY 606
RF NPG W HCHI++H+E G+A+VF + + + C Y
Sbjct: 458 TFRFVTDNPGPWFLHCHIDWHLEAGLAVVFAEDIPNIPIANAISPAWDDLCPKY 511
>3g5w_A Multicopper oxidase type 1; two domain, laccase, nitrifier, metal B
protein; 1.90A {Nitrosomonas europaea}
Length = 318
Score = 242 bits (619), Expect = 1e-74
Identities = 75/301 (24%), Positives = 107/301 (35%), Gaps = 50/301 (16%)
Query: 58 PADGVKRAITVVNRQLPGPAVDVCVGDHVIVNLHNGLMEESTSIHWHGHHQVDSPYMDGV 117
N Q+P P + V GD V VN+ N +IHWHG Q + DGV
Sbjct: 16 LVGKRDFHTFAFNGQVPAPLIHVMEGDDVTVNVTNMT-TLPHTIHWHGMLQRGTWQSDGV 74
Query: 118 PHLTQCPVPPRSTFRYKFNADSPGTHFWHSHTGSQR---GDGSFGAFIIRKPRPREVHAP 174
PH TQ + P TF YKF A+ GT ++H H G +G I+ P+
Sbjct: 75 PHATQHAIEPGDTFTYKFKAEPAGTMWYHCHVNVNEHVTMRGMWGPLIVE-PKNPLPIEK 133
Query: 175 LYDFDLPEHIMLITDWSHVLGVEMFNAHHHADGDNKPPTILMNGKGRFKEFRSNATVTYT 234
D +I++++DW + D + +N K +
Sbjct: 134 TVTKD---YILMLSDWVSSWANKPGEGGIPGDVFD---YYTINAKS------------FP 175
Query: 235 PMEVFTVKQGHSYRFRIINAGYLNCPIELSIANHTLTAINSDGGDI-KPISVGSIVSYAG 293
+ VK+G R R+I AG I H DG + KPI +++ G
Sbjct: 176 ETQPIRVKKGDVIRLRLIGAGDHVHAI--HTHGHISQIAFKDGFPLDKPIKGDTVLIGPG 233
Query: 294 ERWDFILNA------------THHVGNYWIKMRGLMDCDERFTSAYQTAVLRYEGAPDES 341
ER+D ILN H N G+M + YE +
Sbjct: 234 ERYDVILNMDNPGLWMIHDHVDTHTTNGDKPDGGIM------------TTIEYEEVGIDH 281
Query: 342 P 342
P
Sbjct: 282 P 282
Score = 67.4 bits (165), Expect = 3e-12
Identities = 30/129 (23%), Positives = 47/129 (36%), Gaps = 30/129 (23%)
Query: 494 AYDANHPFHLHGHPFRVVAMERVAKNITRQDVIDMDAKGLIRRNLKDAPLK-DTVTVPDG 552
A D H H HGH ++ D L D P+K DTV + G
Sbjct: 195 AGDHVHAIHTHGHISQIAFK---------------DGFPL------DKPIKGDTVLIGPG 233
Query: 553 GFTIIRFHATNPGYWLFHCHIEFHVETGM--------ALVFKVGEHEDMAPVPKDFPTCG 604
+ + NPG W+ H H++ H G + ++ + V KD
Sbjct: 234 ERYDVILNMDNPGLWMIHDHVDTHTTNGDKPDGGIMTTIEYEEVGIDHPFYVWKDKKFVP 293
Query: 605 DYYNVDSVE 613
D+Y +S++
Sbjct: 294 DFYYEESLK 302
>2zwn_A Two-domain type laccase; muticopper oxidase, oxidoreductase; 1.70A
{Metagenomes}
Length = 339
Score = 241 bits (618), Expect = 4e-74
Identities = 71/299 (23%), Positives = 113/299 (37%), Gaps = 28/299 (9%)
Query: 58 PADGVKRAITVVNRQLPGPAVDVCVGDHVIVNLHNGLMEESTSIHWHGHHQVDSPYMDGV 117
A G+ + N Q+PGP + V GD VIVN+ N +IHWHG HQ + DGV
Sbjct: 17 VAPGLDYKVFGFNGQVPGPLIHVQEGDDVIVNVTNNT-SLPHTIHWHGVHQKGTWRSDGV 75
Query: 118 PHLTQCPVPPRSTFRYKFNADSPGTHFWHSHTGSQRG---DGSFGAFIIRKPRPREVHAP 174
P +TQ P+ ++ YKF AD GT ++H H G +G I+ P++
Sbjct: 76 PGVTQQPIEAGDSYTYKFKADRIGTLWYHCHVNVNEHVGVRGMWGPLIV---DPKQPLPI 132
Query: 175 LYDFDLPEHIMLITDWSHVLGVEMFNAHHHADGDNKPPTILMNGKGRFKEFRSNATVTYT 234
+ IM+++ W + + N +N K +
Sbjct: 133 EKRVTK-DVIMMMSTWESAVADKYGEGGT---PMNVADYFSVNAKS------------FP 176
Query: 235 PMEVFTVKQGHSYRFRIINAGYLNCPIELSIANHTLTAINSDGGDI-KPISVGSIVSYAG 293
+ VK+G + R AG + H + + DG + P +++ G
Sbjct: 177 LTQPLRVKKGDVVKIRFFGAGGGIHAM--HSHGHDMLVTHKDGLPLDSPYYADTVLVSPG 234
Query: 294 ERWDFILNATHHVGNYWIKMRGLMDCDER-FTSAYQTAVLRYEGAPDESPAGEVDYDAT 351
ER+D I+ A + G + V+ Y+G P + D D
Sbjct: 235 ERYDVIIEAD-NPGRFIFHDHVDTHVTAGGKHPGGPITVIEYDGVPVDDWYVWKDKDYD 292
Score = 61.3 bits (149), Expect = 3e-10
Identities = 36/159 (22%), Positives = 54/159 (33%), Gaps = 29/159 (18%)
Query: 494 AYDANHPFHLHGHPFRVVAMERVAKNITRQDVIDMDAKGLIRRNLKDAPLK-DTVTVPDG 552
A H H HGH V D L D+P DTV V G
Sbjct: 196 AGGGIHAMHSHGHDMLVTHK---------------DGLPL------DSPYYADTVLVSPG 234
Query: 553 GFTIIRFHATNPGYWLFHCHIEFHVETGM-------ALVFKVGEHEDMAPVPKDFPTCGD 605
+ A NPG ++FH H++ HV G ++ G D V KD +
Sbjct: 235 ERYDVIIEADNPGRFIFHDHVDTHVTAGGKHPGGPITVIEYDGVPVDDWYVWKDKDYDPN 294
Query: 606 YYNVDSVEDEDNEIGEIGEKKEVTTQGSVAGDEIIPGSD 644
++ +S++ G K E + G ++ +
Sbjct: 295 FFYSESLKQGYGMFDHDGFKGEFEQRQRRPGRKLAAALE 333
>3od3_A Blue copper oxidase CUEO; multicopper oxidase, Cu(I) oxidase,
oxidoreductase; 1.10A {Escherichia coli} PDB: 1n68_A
2fqd_A* 2fqe_A* 2fqf_A* 2fqg_A* 3nsd_A 1kv7_A 3pau_A
3pav_A 3nsf_A 1pf3_A 3qqx_A 3nsc_A 3nt0_A 3uad_A 3uaa_A
3uac_A 3uab_A 3uae_A 3nsy_A ...
Length = 488
Score = 178 bits (454), Expect = 3e-49
Identities = 96/544 (17%), Positives = 169/544 (31%), Gaps = 103/544 (18%)
Query: 60 DGVKRAITVVNRQLPGPAVDVCVGDHVIVNLHNGLMEESTSIHWHGHHQVDSPYMDGVPH 119
G N L GPAV + G V V+++N L E T++HWHG +DG P
Sbjct: 32 GGKTATTWGYNGNLLGPAVKLQRGKAVTVDIYNQL-TEETTLHWHGLEV--PGEVDGGP- 87
Query: 120 LTQCPVPPRSTFRYKF-NADSPGTHFWHSH----TGSQRGDGSFGAFIIRKPRPREVHAP 174
Q +PP T ++H H TG Q G G +I ++ P
Sbjct: 88 --QGIIPPGGKRSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIEDDEILKLMLP 145
Query: 175 LYDFDLPEHIMLITDWSH------VLGVEMFNAHHHADGDNKPPTILMNGKGRFKEFRSN 228
+ + + +++ D +++ A GD T+L NG
Sbjct: 146 -KQWGIDDVPVIVQDKKFSADGQIDYQLDVMTAAVGWFGD----TLLTNGA--------- 191
Query: 229 ATVTYTPMEVFTVKQGHSYRFRIINAGYLNCPIELSIAN-HTLTAINSDGGDI-KPISVG 286
+G R R++N + + ++ L I SDGG + +P+ V
Sbjct: 192 ------IYPQHAAPRG-WLRLRLLNGCNAR-SLNFATSDNRPLYVIASDGGLLPEPVKVS 243
Query: 287 SIVSYAGERWDFILNATHHVGNYWIKMRGLMDCDERFTSAYQTAVLRYEGAPDESPAGEV 346
+ GER++ ++ + + + V+R + +
Sbjct: 244 ELPVLMGERFEVLVEVNDNKPFDLVTLPVSQMGMAIAPFDKPHPVMRIQPIAISASGALP 303
Query: 347 DYDATRTSGTVLNPLNTPSRQAKSTLISELSTVHSASSDVRLQDRANLTFYISYDFYEID 406
D ++ + L L Q + ++ + Q A +
Sbjct: 304 DTLSSLPALPSLEGLTVRKLQLSMDPMLDMMGMQMLMEKYGDQAMAGMDHSQMMGHMGHG 363
Query: 407 NPHFHLSTLYGFDEVKRLEKVRTPQLNHLSFRFPTFPLLSQRDQIDESTFCSNLTTDRCA 466
N + + + + ++N +F ++ +
Sbjct: 364 NMN-------HMNHGGKFDFHHANKINGQAFDM---------NKPMFA------------ 395
Query: 467 DSYCECTNVVNVPLESVVELIIIDEGVAYDANHPFHLHGHPFRVVAMERVAKNITRQDVI 526
+I GV HPFH+HG FR+++
Sbjct: 396 -----------AAKGQYERWVIS--GVGDMMLHPFHIHGTQFRILSENGKPPAAH----- 437
Query: 527 DMDAKGLIRRNLKDAPLKDTVTVPDGGFTII---RFHATNPGYWLFHCHIEFHVETGMAL 583
A KDTV V ++ A ++ HCH+ H +TGM L
Sbjct: 438 -------------RAGWKDTVKVEGNVSEVLVKFNHDAPKEHAYMAHCHLLEHEDTGMML 484
Query: 584 VFKV 587
F V
Sbjct: 485 GFTV 488
>2xu9_A Laccase; oxidoreductase, multicopper oxidases; 1.50A {Thermus
thermophilus} PDB: 2xuw_A 2xvb_A 2yae_A 2yaf_A 2yah_A
2yam_A 2yao_A 2yap_A 2yaq_A 2yar_A 4ai7_A
Length = 439
Score = 173 bits (440), Expect = 1e-47
Identities = 63/313 (20%), Positives = 113/313 (36%), Gaps = 38/313 (12%)
Query: 57 IPADGVKRAITVVNRQLPGPAVDVCVGDHVIVNLHNGLMEESTSIHWHGHHQVDSPYMDG 116
+ G + + PGP + V D V + L N L E T++HWHG SP +D
Sbjct: 28 LAIAGQRATLLTYGGSFPGPTLRVRPRDTVRLTLENRL-PEPTNLHWHGLPI--SPKVDD 84
Query: 117 VPHLTQCPVPPRSTFRYKFNA--DSPGTHFWHSH----TGSQRGDGSFGAFIIRKPRPRE 170
+PP ++ Y+F + GT ++H H Q G GA ++ +
Sbjct: 85 P----FLEIPPGESWTYEFTVPKELAGTFWYHPHLHGRVAPQLFAGLLGALVVES--SLD 138
Query: 171 VHAPLYDFDLPEHIMLITDWSHVLGVEMFNAHHHADGDNKPPTILMNGKGRFKEFRSNAT 230
L + + EH++++ D + G + + +L+NG R
Sbjct: 139 AIPELREAE--EHLLVLKDLALQGGRPAPHTPMDWMNGKEGDLVLVNGALRP-------- 188
Query: 231 VTYTPMEVFTVKQGHSYRFRIINAGYLNCPI-ELSIANHTLTAINSDGGDI-KPISVGSI 288
V Q + R R++NA N L++ +H L I +DGG + +P+ V +
Sbjct: 189 --------TLVAQKATLRLRLLNAS--NARYYRLALQDHPLYLIAADGGFLEEPLEVSEL 238
Query: 289 VSYAGERWDFILNATHHVGNYWIKMRGLMDCDERFTSAYQTAVLRYEGAPDESPAGEVDY 348
+ GER + ++ G + ++ A +G +
Sbjct: 239 LLAPGERAEVLVRLRKE-GRFLLQALPYDRGAMGMMDMGGMAHAMPQGPSRPETLLYLIA 297
Query: 349 DATRTSGTVLNPL 361
+ L
Sbjct: 298 PKNPKPLPLPKAL 310
Score = 88.3 bits (219), Expect = 9e-19
Identities = 30/113 (26%), Positives = 46/113 (40%), Gaps = 23/113 (20%)
Query: 476 VNVPLESVVELIIIDEGVAYDANHPFHLHGHPFRVVAMERVAKNITRQDVIDMDAKGLIR 535
+ ++V + ++G D +HPFHLH HPF+V+++
Sbjct: 350 LKGQAQTVEVWEVENQG---DMDHPFHLHVHPFQVLSVGG-------------------- 386
Query: 536 RNLKDAPLKDTVTVPDGGFTIIRFHATNPGYWLFHCHIEFHVETGMALVFKVG 588
R KD V + G + G +FHCHI H + GM V +VG
Sbjct: 387 RPFPYRAWKDVVNLKAGEVARLLVPLREKGRTVFHCHIVEHEDRGMMGVLEVG 439
Score = 32.5 bits (74), Expect = 0.43
Identities = 13/81 (16%), Positives = 20/81 (24%), Gaps = 9/81 (11%)
Query: 74 PGPAVDVCVGDHVIVNLHNGLMEESTSIHWHGHH-QVDSPYMDGVPHLTQCP-----VPP 127
+ + + N + H H H QV S G P + +
Sbjct: 346 RRVDLKGQAQTVEVWEVENQ-GDMDHPFHLHVHPFQVLSV--GGRPFPYRAWKDVVNLKA 402
Query: 128 RSTFRYKFNADSPGTHFWHSH 148
R G +H H
Sbjct: 403 GEVARLLVPLREKGRTVFHCH 423
>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A
{Arthrobacter SP}
Length = 288
Score = 154 bits (390), Expect = 2e-42
Identities = 53/247 (21%), Positives = 87/247 (35%), Gaps = 38/247 (15%)
Query: 59 ADGVKRAITVVNRQLPGPAVDVCVGDHVIVNLHNGLMEESTSIHWHGHHQVDSPYMDGVP 118
A G+ N ++PGP + GD + ++ N +IH+HG H+ MDG P
Sbjct: 49 APGIIFKGWSYNGRIPGPTLWAREGDALRIHFTNAG-AHPHTIHFHGVHR---ATMDGTP 104
Query: 119 HLTQCPVPPRSTFRYKFNADSPGTHFWHSHT---GSQRGDGSFGAFIIRKPRPREVHAPL 175
+ + P +F Y+F+A GTH +H H G +G FI+ P+E P
Sbjct: 105 GIGAGSIAPGQSFTYEFDATPFGTHLYHCHQSPLAPHIAKGLYGGFIV---EPKEGRPPA 161
Query: 176 YDFDLPEHIMLITDWSHVLGVEMFNAHHHADGDNKPPTILMNGKGRFKEFRSNATVTYTP 235
D E +M++ + + DG + +NG + +
Sbjct: 162 DD----EMVMVMNGY-------------NTDGGDDNEFYSVNG-------LPFHFMDFP- 196
Query: 236 MEVFTVKQGHSYRFRIINAGYLNCPIELSIANHTLTAINSDGGDIKPISVGSIVSYAGER 295
VKQ R +IN + I + + +I G+R
Sbjct: 197 ---VKVKQHELVRIHLINVLEYDPINSFHIHGNFFHYYPTGTMLTPSEYTDTISQVQGQR 253
Query: 296 WDFILNA 302
L
Sbjct: 254 GILELRF 260
Score = 68.3 bits (167), Expect = 9e-13
Identities = 21/94 (22%), Positives = 32/94 (34%), Gaps = 21/94 (22%)
Query: 494 AYDANHPFHLHGHPFRVVAMERVAKNITRQDVIDMDAKGLIRRNLKDAPLKDTVTVPDGG 553
YD + FH+HG+ F + L + DT++ G
Sbjct: 214 EYDPINSFHIHGNFFHYYPTGTM---------------------LTPSEYTDTISQVQGQ 252
Query: 554 FTIIRFHATNPGYWLFHCHIEFHVETGMALVFKV 587
I+ PG ++FH H E G F+V
Sbjct: 253 RGILELRFPYPGKFMFHAHKTEFAELGWMGFFEV 286
Score = 36.3 bits (84), Expect = 0.024
Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 3/72 (4%)
Query: 548 TVPDGGFTIIRFHATNPGYWLFHCHIE---FHVETGMALVFKVGEHEDMAPVPKDFPTCG 604
++ G F AT G L+HCH H+ G+ F V E P +
Sbjct: 110 SIAPGQSFTYEFDATPFGTHLYHCHQSPLAPHIAKGLYGGFIVEPKEGRPPADDEMVMVM 169
Query: 605 DYYNVDSVEDED 616
+ YN D +D +
Sbjct: 170 NGYNTDGGDDNE 181
Score = 34.0 bits (78), Expect = 0.15
Identities = 19/94 (20%), Positives = 27/94 (28%), Gaps = 10/94 (10%)
Query: 76 PAVDVCVGDHVIVNLHN-GLMEESTSIHWHGHH-QVDSPYMDG----VPHLTQ-CPVPPR 128
V V + V ++L N + S H HG+ Y G T
Sbjct: 195 FPVKVKQHELVRIHLINVLEYDPINSFHIHGNFFHY---YPTGTMLTPSEYTDTISQVQG 251
Query: 129 STFRYKFNADSPGTHFWHSHTGSQRGDGSFGAFI 162
+ PG +H+H G G F
Sbjct: 252 QRGILELRFPYPGKFMFHAHKTEFAELGWMGFFE 285
>3aw5_A Multicopper oxidase; beta barrel, oxidoreductase; 2.00A
{Pyrobaculum aerophilum}
Length = 448
Score = 153 bits (388), Expect = 1e-40
Identities = 74/463 (15%), Positives = 142/463 (30%), Gaps = 63/463 (13%)
Query: 58 PADGVK-RAITVVNRQLPGPAVDVCVGDHVIVNLHNGLMEESTSIHWHGHHQVDSPYMDG 116
A ++ A + + P + + G V + L N L E T +HWHG + + D
Sbjct: 19 EATYIEATASGYMAEGVLNPTIILRRGQRVDMTLKNKL-TEPTIVHWHGFDV--NWHNDA 75
Query: 117 VPHLTQCPVPPRSTFRYKF-NADSPGTHFWHSH----TGSQRGDGSFGAFIIRKPRPREV 171
P + P ++ Y F + GT+ +H H T Q G G I+
Sbjct: 76 HPS---FAITPGESYNYSFDVVNRAGTYLYHPHPHGLTAKQFYMGQLGLVIVEDSGSD-- 130
Query: 172 HAPLYDFDLPEHIMLITDWSHVLGVEMFNAHHHADGDNKP-PTILMNGKGRFKEFRSNAT 230
Y + + ++I+D + G ++N +L+NG
Sbjct: 131 LGFKYGVN--DLPLVISDRRFIGGAPVYNPTPMEMIAGFLGNAVLVNGV----------- 177
Query: 231 VTYTPMEVFTVKQGHSYRFRIINAGYLNCPI-ELSIANHT-----LTAINSDGGDI-KPI 283
+ G SYR R++N N + LSI + I D G + +PI
Sbjct: 178 -----KDAVFKLSGGSYRLRLVNGS--NARLYMLSIVKKNGDVVPMRLIAVDQGFLARPI 230
Query: 284 SVGSIVSYAGERWDFILNATHHVGNYWIKMRGLMDCDERFTSAYQTAVLRYEGAPDESPA 343
V ++ ER + ++ G Y +K T
Sbjct: 231 EVRALFLAPAERAEVVVELGE--GVYLLKN---------------TPFDPMHLEMGHGMQ 273
Query: 344 GEVDYDATRTSGTVLNPLNTPSRQAKSTLISELSTVHSASSDVRLQDRANLTFYISYDFY 403
+ + T T L + ++ + + + + I+ F+
Sbjct: 274 EALPEGSEYTIATFLVEGKGEAVPVEALSDPPPEPPKPTRTRRFALSLSGMQWTINGMFW 333
Query: 404 EIDNPHFHLSTLYGFDEVKRLEKVRTPQLNHLSFRFPTFPLLSQRDQIDESTFCSNLTTD 463
NP F ++ E+ + + + + ++ R +
Sbjct: 334 NASNPLFEHVSV-EGVELWEIVNDKASMPHPMHLHGFPMWIIE-RKDSPRQVAELAVDNR 391
Query: 464 RCADSYCECTNVVNVPLESVVELIIIDEGVAYDANHPFHLHGH 506
+ + V + V++++ A F H H
Sbjct: 392 GRLPTDLGLKDTVLIWPGETVKIVV--NFDAKKRGQLFPFHCH 432
Score = 80.3 bits (198), Expect = 5e-16
Identities = 31/115 (26%), Positives = 48/115 (41%), Gaps = 11/115 (9%)
Query: 476 VNVPLESVVELIIIDEGVAYDANHPFHLHGHPFRVVAMERVAKNITRQDVIDMDAKGLIR 535
+V +E V I+++ + HP HLHG P ++ + + + A
Sbjct: 341 EHVSVEGVELWEIVNDKASMP--HPMHLHGFPMWIIERKDSPRQV------AELAVDNRG 392
Query: 536 RNLKDAPLKDTVTVPDGGFT--IIRFHATNPGY-WLFHCHIEFHVETGMALVFKV 587
R D LKDTV + G ++ F A G + FHCH H + GM + V
Sbjct: 393 RLPTDLGLKDTVLIWPGETVKIVVNFDAKKRGQLFPFHCHNLEHEDGGMMINIAV 447
>2g23_A PHS, phenoxazinone synthase; copper, metalloprotein, laccase,
multicopper oxidase, hexamer; 2.30A {Streptomyces
antibioticus} PDB: 3gyr_A
Length = 612
Score = 156 bits (394), Expect = 2e-40
Identities = 81/607 (13%), Positives = 157/607 (25%), Gaps = 123/607 (20%)
Query: 57 IPADGVKRAITVVNRQLPGPAVDVCVGDHVIVNLHNGL---------------------- 94
+ + + Q+PGP ++V G V + N +
Sbjct: 46 LHPQLPPTLMWGYDGQVPGPTIEVRRGQRVRIAWTNRIPKGSEYPVTSVEVPLGPPGTPA 105
Query: 95 ------------------MEESTSIHWHGHHQVDSPYMDGVPHLTQCPVPPRSTFRYKF- 135
+ + H HG DG V ++
Sbjct: 106 PNTEPGRGGVEPNKDVAALPAWSVTHLHGAQT--GGGNDGWAD---NAVGFGDAQLSEYP 160
Query: 136 NADSPGTHFWHSH----TGSQRGDGSFGAFIIRKPRPREVHAPLYDFDLPEHIMLITDWS 191
N ++H H T G +G +++R + P D ++P +LI D +
Sbjct: 161 NDHQATQWWYHDHAMNITRWNVMAGLYGTYLVRDDEEDALGLPSGDREIP---LLIADRN 217
Query: 192 -HVLGVEMFNAHHHADGDNKPPTILMNGKGRFKEFRSN-ATVTYTPMEVFTVKQGHSYRF 249
N + GK F TV V G YR
Sbjct: 218 LDTDEDGRLNGRLLHKTVIVQQSNPETGKPVSIPFFGPYTTVNGRIWPYADVDDG-WYRL 276
Query: 250 RIINAGYLNCPIELSIANH-------TLTAINSDGGDI-------KPISVGSIVSYAGER 295
R++NA L + + + I SDGG + ++ + + ER
Sbjct: 277 RLVNASN-ARIYNLVLIDEDDRPVPGVVHQIGSDGGLLPRPVPVDFDDTLPVLSAAPAER 335
Query: 296 WDFILNATHHVGNYWIKMRGLMDCDERFTSAYQTAVLRYEGAPDESPAGEVDYDATRTSG 355
+D +++ G + D+ + T E V S
Sbjct: 336 FDLLVDFRALGGRRLRLV------DKGPGAPAGTPDPLGGVRYPEVMEFRVRETCEEDSF 389
Query: 356 TVLNPLNTPSRQAKSTLISELSTVHSASSDVRLQDRANLTFYISYDFYEIDNPHFHLSTL 415
+ L+ R+ + + + H + +
Sbjct: 390 ALPEVLSGSFRRMSHDIPHGHRLIVLTPPGTKGSGG-----------------HPEIWEM 432
Query: 416 YGFDEVKRLEKVRTPQLNHLSFRFPTFPLLSQRDQIDESTFCSNLTTDRCADSYCECTNV 475
++ ++ + T ++
Sbjct: 433 AEVEDPADVQVPAEGVIQVTGADGRTKTYRRTAATFND-------------------GLG 473
Query: 476 VNVPLESVVELIIIDEGVAYDANHPFHLHGHPFRVV------AMERVAKNITRQDVIDMD 529
+ + + ++ HP H+H F+V+ A + + +D
Sbjct: 474 FTIGEGTHEQWTFLNLS---PILHPMHIHLADFQVLGRDAYDASGFDLALGGTRTPVRLD 530
Query: 530 AKGLIRRNLKDAPLKDTVTVPDGGFTIIRFH-ATNPGYWLFHCHIEFHVETGMALVFKVG 588
+ + KD VP + G +++HCH+ H + GM F V
Sbjct: 531 PDTPVPLAPNELGHKDVFQVPGPQGLRVMGKFDGAYGRFMYHCHLLEHEDMGMMRPFVVM 590
Query: 589 EHEDMAP 595
E +
Sbjct: 591 PPEALKF 597
>3zx1_A Oxidoreductase, putative; laccase, metallo-oxidase, cuprous
oxidase; 1.95A {Campylobacter jejuni subsp}
Length = 481
Score = 150 bits (380), Expect = 3e-39
Identities = 59/253 (23%), Positives = 101/253 (39%), Gaps = 39/253 (15%)
Query: 59 ADGVKRAITVVNRQLPGPAVDVCVGDHVIVNLHNGLMEESTSIHWHGHHQVDSPYMDGVP 118
G K N +P P ++V GD + + + N L +E+T+IHWHG P DG P
Sbjct: 65 IKGKKTLFYTYNGLVPAPKIEVFEGDKLEILVKNKL-KEATTIHWHGVPV--PPDQDGSP 121
Query: 119 HLTQCPVPPRSTFRYKF--NADSPGTHFWHSH----TGSQRGDGSFGAFIIRKPRPREVH 172
P+ Y+F DS GT+++H H Q G GAF+I+ +
Sbjct: 122 ---HDPILAGEERIYRFEIPQDSAGTYWYHPHPHYTASKQVFMGLAGAFVIKAKKD---- 174
Query: 173 APLYDFDLPEHIMLITDWSHVLGVEMFNAHHHADGDNK-PPTILMNGKGRFKEFRSNATV 231
A + + ++I+D ++ N + + + + +L+NG+ +
Sbjct: 175 ALSHLKEKD---LMISDLRLDENAQIPNNNLNDWLNGREGEFVLINGQFK---------- 221
Query: 232 TYTPMEVFTVKQGHSYRFRIINAGYLNCPIELSIANHTLTAINSDGGDI-KPISVGSIVS 290
+K + R RI NA + L I + +DGG I K I +
Sbjct: 222 -------PKIKLATNERIRIYNATAAR-YLNLRIQGAKFILVGTDGGLIEKTIYKEELFL 273
Query: 291 YAGERWDFILNAT 303
R + +++A
Sbjct: 274 SPASRVEVLIDAP 286
Score = 80.0 bits (197), Expect = 7e-16
Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 19/113 (16%)
Query: 477 NVPLESVVELIIIDEGVAYDANHPFHLHGHPFRVVAMERVAKNITRQDVIDMDAKGLIRR 536
+ L V + I+I++ +HPFH+HG F +++ + +
Sbjct: 388 SSKLGVVEDWIVINKS---HMDHPFHIHGTQFELISSKL----------------NGKVQ 428
Query: 537 NLKDAPLKDTVTVPDGGFTIIRFHATNPGYWLFHCHIEFHVETGMALVFKVGE 589
+ L+DT+ V +R G ++HCHI H + GM +V E
Sbjct: 429 KAEFRALRDTINVRPNEELRLRMKQDFKGLRMYHCHILEHEDLGMMGNLEVKE 481
Score = 44.9 bits (106), Expect = 7e-05
Identities = 16/98 (16%), Positives = 29/98 (29%), Gaps = 9/98 (9%)
Query: 76 PAVDVCVGDHVIVNLHNGLMEESTSIHWHGHH-QVDSPYMDGVPHLTQCP-------VPP 127
+ +G + N H HG ++ S ++G + V P
Sbjct: 385 IDLSSKLGVVEDWIVIN-KSHMDHPFHIHGTQFELISSKLNGKVQKAEFRALRDTINVRP 443
Query: 128 RSTFRYKFNADSPGTHFWHSHTGSQRGDGSFGAFIIRK 165
R + D G +H H G G +++
Sbjct: 444 NEELRLRMKQDFKGLRMYHCHILEHEDLGMMGNLEVKE 481
Score = 32.2 bits (73), Expect = 0.61
Identities = 29/249 (11%), Positives = 69/249 (27%), Gaps = 20/249 (8%)
Query: 68 VVNRQLPGPAVDVCVGDHVIVNLHNGLMEESTSIHWHGH--HQVDSPYMDGVPHLTQCPV 125
++N Q P + + + + ++N ++ G V + DG + +
Sbjct: 215 LINGQ-FKPKIKL--ATNERIRIYNATAARYLNLRIQGAKFILVGT---DGGL--IEKTI 266
Query: 126 PPRSTF-----RYKFNADSPGTHFWHSHTGSQRGDGSFGAFIIRKPRPREVHAPLYDFDL 180
F R + D+P + + D ++ + +L
Sbjct: 267 YKEELFLSPASRVEVLIDAPKDGNFKLESAYYDRDKMMVKEEPNTLFLANINLKKENVEL 326
Query: 181 PEHIMLITDWSHVLGV-EMFNAHHHADGDNKPPTILMNGKGRFKEFRSNATVTYTPMEV- 238
P+++ + E+ + H K +Y +
Sbjct: 327 PKNLKIFKPSEEPKEFKEIIMSEDHMQMHGMMGKSEGELKIALASMFLINRKSYDLKRID 386
Query: 239 FTVKQGHSYRFRIINAGYLNCPIELSIANHTLTAINSDGGDIKPISVG---SIVSYAGER 295
+ K G + +IN +++ P + L + +G K +I E
Sbjct: 387 LSSKLGVVEDWIVINKSHMDHPFHIHGTQFELISSKLNGKVQKAEFRALRDTINVRPNEE 446
Query: 296 WDFILNATH 304
+
Sbjct: 447 LRLRMKQDF 455
Score = 28.7 bits (64), Expect = 6.6
Identities = 9/105 (8%), Positives = 21/105 (20%), Gaps = 24/105 (22%)
Query: 499 HPFHLHGHPFRVVAMERVAKNITRQDVIDMDAKGLIRRNLKDAPLK-DTVTVPDGGFTII 557
+ G F +V D L + + + + + +
Sbjct: 243 LNLRIQGAKFILVG---------------TDG------GLIEKTIYKEELFLSPAS--RV 279
Query: 558 RFHATNPGYWLFHCHIEFHVETGMALVFKVGEHEDMAPVPKDFPT 602
P F ++ M + + K
Sbjct: 280 EVLIDAPKDGNFKLESAYYDRDKMMVKEEPNTLFLANINLKKENV 324
>3abg_A Bilirubin oxidase; cleavage on PAIR of basic residues, glyco
metal-binding, oxidoreductase; HET: NAG BMA NDG; 2.30A
{Myrothecium verrucaria} PDB: 2xll_A*
Length = 534
Score = 143 bits (362), Expect = 2e-36
Identities = 55/302 (18%), Positives = 98/302 (32%), Gaps = 41/302 (13%)
Query: 57 IPADGVKRAITVVNRQLPGPAVDVCVGDHVIVNLHNGLMEESTSIHWHGHHQVDSPYMDG 116
+ D + + PGP V G +V N E S+H HG DG
Sbjct: 50 VYPDLGSADLVGYDGMSPGPTFQVPRGVETVVRFINNA-EAPNSVHLHGSFS--RAAFDG 106
Query: 117 VPHLTQCPVPPRSTFRYKF-NADSPGTHFWHSH----TGSQRGDGSFGAFIIRKPRPREV 171
+ P S Y + N S T ++H H T G G +++ P +
Sbjct: 107 WA---EDITEPGSFKDYYYPNRQSARTLWYHDHAMHITAENAYRGQAGLYMLTDPAEDAL 163
Query: 172 HAPLYDFDLPEHIMLITDWSHVLGVEMFNAHHHADGDNKPPTILMNGKGRFKEFRSNATV 231
+ P + + M++T + + + + I +NG+
Sbjct: 164 NLPS-GYGEFDIPMILTSKQYTANGNLVTTNGELNSFW-GDVIHVNGQPW---------- 211
Query: 232 TYTPMEVFTVKQGHSYRFRIINAGYLNCPIELSIANHT-------LTAINSDGGDI-KPI 283
F + YRFR ++A + L A+ I SD G + P
Sbjct: 212 ------PFKNVEPRKYRFRFLDAAV-SRSFGLYFADTDAIDTRLPFKVIASDSGLLEHPA 264
Query: 284 SVGSIVSYAGERWDFILNATHHVG-NYWIKMRGLMDCDERFTSAYQ--TAVLRYEGAPDE 340
+ ER++ + + + + G ++ G + Y V+R+ A D
Sbjct: 265 DTSLLYISMAERYEVVFDFSDYAGKTIELRNLGGSIGGIGTDTDYDNTDKVMRFVVADDT 324
Query: 341 SP 342
+
Sbjct: 325 TQ 326
Score = 85.0 bits (210), Expect = 2e-17
Identities = 29/127 (22%), Positives = 46/127 (36%), Gaps = 17/127 (13%)
Query: 477 NVPLESVVELIIIDEGVAYDANHPFHLHGHPFRVVAMERVAKNITRQDVIDMDAKGLIRR 536
NVP+ +V +I+ G + HP H+H F+V++ T
Sbjct: 378 NVPVGTVERWELINAGNGWT--HPIHIHLVDFKVISRTSGNNARTVMPY----------- 424
Query: 537 NLKDAPLKDTVTVPDGG-FTIIRFHATNPGYWLFHCHIEFHVETGMALVFKVGEHEDMAP 595
++ LKD V + + +A PG ++FHCH H + M F D
Sbjct: 425 ---ESGLKDVVWLGRRETVVVEAHYAPFPGVYMFHCHNLIHEDHDMMAAFNATVLPDYGY 481
Query: 596 VPKDFPT 602
F
Sbjct: 482 NATVFVD 488
Score = 33.0 bits (75), Expect = 0.35
Identities = 17/84 (20%), Positives = 25/84 (29%), Gaps = 11/84 (13%)
Query: 76 PAVDVCVGDHVIVNLHNGLMEESTSIHWHGHH-QVDS--PYMDGVPHLTQCP-------V 125
+V VG L N + IH H +V S + + +
Sbjct: 375 LLANVPVGTVERWELINAGNGWTHPIHIHLVDFKVISRTSGNNARTVMPYESGLKDVVWL 434
Query: 126 PPRSTFR-YKFNADSPGTHFWHSH 148
R T A PG + +H H
Sbjct: 435 GRRETVVVEAHYAPFPGVYMFHCH 458
>2uxt_A Protein SUFI, SUFI; oxidoreductase, periplasmic, cupredoxin-like,
FTS mutant suppressor; 1.90A {Escherichia coli} PDB:
2uxv_A
Length = 451
Score = 121 bits (304), Expect = 2e-29
Identities = 47/252 (18%), Positives = 95/252 (37%), Gaps = 32/252 (12%)
Query: 59 ADGVKRAITVVNRQLPGPAVDVCVGDHVIVNLHNGLMEESTSIHWHGHHQVDSPYMDGVP 118
G + ++ +N + GP + V GD V + N L E+ S+ G + G P
Sbjct: 33 TPGTRASVWGINGRYLGPTIRVWKGDDVKLIYSNRL-TENVSMTVAGLQV--PGPLMGGP 89
Query: 119 HLTQCPVPPRSTFRYKF-NADSPGTHFWHSH----TGSQRGDGSFGAFIIRKPRPREVHA 173
+ P + + + T ++H++ T Q +G G +++ + +
Sbjct: 90 AR---MMSPNADWAPVLPIRQNAATLWYHANTPNRTAQQVYNGLAGMWLVEDEVSKSLPI 146
Query: 174 PLYDFDLPEHIMLITDWSHVLGVEMFNAHHHADGDNKPPTILMNGKGRFKEFRSNATVTY 233
P + + + ++I D + G T+L+NG
Sbjct: 147 PN-HYGVDDFPVIIQDKRLD-NFGTPEYNEPGSGGFVGDTLLVNGV-------------- 190
Query: 234 TPMEVFTVKQGHSYRFRIINAGYLNCPIELSIAN-HTLTAINSDGGDI-KPISVGSIVSY 291
V +G R R++NA + +L + + L I+ D G + P+SV +
Sbjct: 191 -QSPYVEVSRG-WVRLRLLNASN-SRRYQLQMNDGRPLHVISGDQGFLPAPVSVKQLSLA 247
Query: 292 AGERWDFILNAT 303
GER + +++ +
Sbjct: 248 PGERREILVDMS 259
Score = 65.0 bits (158), Expect = 3e-11
Identities = 15/114 (13%), Positives = 28/114 (24%), Gaps = 25/114 (21%)
Query: 476 VNVPLESVVELIIIDEGVAYDANHPFHLHGHPFRVVAMERVAKNITRQDVIDMDAKGLIR 535
V + + + FH+ G F++ +
Sbjct: 349 VTAQQGTWERWTVRADE-----PQAFHIEGVMFQI---------RNVNGAMPFPE----- 389
Query: 536 RNLKDAPLKDTVTVPDGGFTIIRF--HATNPGYWLFHCHIEFHVETGMALVFKV 587
D KDTV V ++ F + + F+ + G V
Sbjct: 390 ----DRGWKDTVWVDGQVELLVYFGQPSWAHFPFYFNSQTLEMADRGSIGQLLV 439
>2wsd_A Spore coat protein A; oxidoreductase, multi-copper oxidase,
sporulation, COTA- LAC copper centre; 1.60A {Bacillus
subtilis} PDB: 1gsk_A 1hkp_A 1hkz_A 1hl0_A 1hl1_A
1of0_A* 1ogr_A 1uvw_A* 1w6l_A 1w6w_A 1w8e_A 2bhf_A
2x87_A 2x88_A* 4a67_A 4akq_A 4a68_A* 4akp_A* 4a66_A
4ako_A
Length = 513
Score = 121 bits (304), Expect = 3e-29
Identities = 64/291 (21%), Positives = 103/291 (35%), Gaps = 46/291 (15%)
Query: 55 HCIPADGVKRAITVVNRQLPGPAVDVCVGDHVIVNLHNGL-------------------- 94
H + D + N PGP ++V ++V V N L
Sbjct: 37 HQLHRDLPPTRLWGYNGLFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHSDSQHE 96
Query: 95 -MEESTSIHWHGHHQVDSPYMDGVPH--LTQCPVPPRSTFRYKF----NADSPGTHFWHS 147
E T +H HG DG P ++ F+ + N ++H
Sbjct: 97 EPEVKTVVHLHGGVT--PDDSDGYPEAWFSKDFEQTGPYFKREVYHYPNQQRGAILWYHD 154
Query: 148 H----TGSQRGDGSFGAFIIRKPRPREVHAPLYDFDLPEHIMLITDWS-HVLGVEMFNAH 202
H T G GA+II P+ + + P ++D+P +LITD + + G + +
Sbjct: 155 HAMALTRLNVYAGLVGAYIIHDPKEKRLKLPSDEYDVP---LLITDRTINEDGSLFYPSA 211
Query: 203 HHADGDNKPPTILMNGKGRFKEFRSNATVTYTPMEVFTVKQGHSYRFRIINAGYLNCPIE 262
+ P ++ V V+ YRFR+INA
Sbjct: 212 PENPSPSLPNPSIVPAF-----CGETILVNGKVWPYLEVEPR-KYRFRVINAS-NTRTYN 264
Query: 263 LSIAN-HTLTAINSDGGDI-KPISVGSIVSYAGERWDFILNATHHVGNYWI 311
LS+ N I SDGG + + + + S ER+D I++ T + G I
Sbjct: 265 LSLDNGGDFIQIGSDGGLLPRSVKLNSFSLAPAERYDIIIDFTAYEGESII 315
Score = 78.6 bits (193), Expect = 2e-15
Identities = 19/93 (20%), Positives = 31/93 (33%), Gaps = 1/93 (1%)
Query: 498 NHPFHLHGHPFRVVAMERVAKNITRQDVIDMDAKGLIRRNLKDAPLKDTVTVPDGGFTII 557
HP HLH FRV+ ++ + + KDT+ G I
Sbjct: 418 THPIHLHLVSFRVLDRRPFDIARYQESGELSYTGPAVPPPPSEKGWKDTIQAHAGEVLRI 477
Query: 558 RFH-ATNPGYWLFHCHIEFHVETGMALVFKVGE 589
G +++HCH H + M + +
Sbjct: 478 AATFGPYSGRYVWHCHALEHEDYDMMRPMDITD 510
>2zoo_A Probable nitrite reductase; electron transfer, electron transport,
heme, iron, binding, oxidoreductase, transport; HET: SUC
HEM; 1.95A {Pseudoalteromonas haloplanktis}
Length = 442
Score = 109 bits (274), Expect = 1e-25
Identities = 49/251 (19%), Positives = 78/251 (31%), Gaps = 32/251 (12%)
Query: 59 ADGVKRAITVVNRQLPGPAVDVCVGDHVIVNLHNGLMEE-STSIHWHGHHQVDSPYMDGV 117
ADGV+ +PG + V GD + NL N + +I H
Sbjct: 43 ADGVEYVFWSFGETVPGSFIRVREGDEIEFNLSNHPSSKMPHNIDLHA-------VTGPG 95
Query: 118 PHLTQCPVPPRSTFRYKFNADSPGTHFWHSHTGS---QRGDGSFGAFIIRKPRPREVHAP 174
P T + F A +PG + +H T +G +G ++ P+E AP
Sbjct: 96 GGAESSFTAPGHTSTFNFKALNPGLYIYHCATAPVGMHIANGMYGLILV---EPKEGLAP 152
Query: 175 LYDFDLPEHIMLITDWSHVLGVEMFNAHHHADG---DNKPPTILMNGKGRFKEFRSNATV 231
D E+ ++ D+ D ++ NG
Sbjct: 153 -VD---REYYLVQGDFYTKGEFGEAGLQPFDMAKAIDEDADYVVFNGSVGS--------- 199
Query: 232 TYTPMEVFTVKQGHSYRFRIINAGYLNCPIELSIANHTLTAINSDGGDIKPISVGSIVSY 291
T T K G + R I N G N + + +GG +K +V + +
Sbjct: 200 -TTDENSLTAKVGETVRLYIGNGG-PNLVSSFHVIGEIFDTVYVEGGSLKNHNVQTTLIP 257
Query: 292 AGERWDFILNA 302
AG
Sbjct: 258 AGGAAIVEFKV 268
Score = 63.0 bits (153), Expect = 1e-10
Identities = 25/133 (18%), Positives = 43/133 (32%), Gaps = 22/133 (16%)
Query: 496 DANHPFHLHGHPFRVVAMERVAKNITRQDVIDMDAKGLIRRNLKDAPLKDTVTVPDGGFT 555
+ FH+ G F V +E ++ +V T +P GG
Sbjct: 224 NLVSSFHVIGEIFDTVYVE--GGSLKNHNV-------------------QTTLIPAGGAA 262
Query: 556 IIRFHATNPGYWLFHCHIEFHVETGMAL-VFKVGEHEDMAPVPKDFPTCGDYYNVDSVED 614
I+ F PG ++ H F AL + KV +D + +++
Sbjct: 263 IVEFKVEVPGTFILVDHSIFRAFNKGALAMLKVEGPDDHSIFTGKTAENVYLPEGSAIQS 322
Query: 615 EDNEIGEIGEKKE 627
DN +I +
Sbjct: 323 LDNTFTKITANNK 335
Score = 38.0 bits (88), Expect = 0.011
Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 11/66 (16%)
Query: 546 TVTVPDGGFTII--------RFHATNPGYWLFHCH---IEFHVETGMALVFKVGEHEDMA 594
T + F A NPG +++HC + H+ GM + V E +A
Sbjct: 92 TGPGGGAESSFTAPGHTSTFNFKALNPGLYIYHCATAPVGMHIANGMYGLILVEPKEGLA 151
Query: 595 PVPKDF 600
PV +++
Sbjct: 152 PVDREY 157
>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-],
oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP:
b.6.1.3 b.6.1.3 PDB: 1kbw_A
Length = 327
Score = 102 bits (256), Expect = 5e-24
Identities = 42/251 (16%), Positives = 69/251 (27%), Gaps = 32/251 (12%)
Query: 59 ADGVKRAITVVNRQLPGPAVDVCVGDHVIVNLHNGLMEESTSIHWHGHHQVDSPYMDGVP 118
DGV+ + +PG + V GD V V N +S H +
Sbjct: 53 DDGVEYRYWTFDGDVPGRMIRVREGDTVEVEFSN----NPSSTVPHNVDFHAA--TGQGG 106
Query: 119 HLTQCPVPPRSTFRYKFNADSPGTHFWHSHTGS---QRGDGSFGAFIIRKPRPREVHAPL 175
P T + F A PG + +H +G +G ++ P
Sbjct: 107 GAAATFTAPGRTSTFSFKALQPGLYIYHCAVAPVGMHIANGMYGLILVEPKEGL----PK 162
Query: 176 YDFDLPEHIMLITDWSHVLGVEMFNAHHHADG---DNKPPTILMNGKGRFKEFRSNATVT 232
D E ++ D+ +P ++ NG
Sbjct: 163 VD---KEFYIVQGDFYTKGKKGAQGLQPFDMDKAVAEQPEYVVFNGHVG----------A 209
Query: 233 YTPMEVFTVKQGHSYRFRIINAG-YLNCPIELSIANHTLTAINSDGGDIKPISVGSIVSY 291
T K G + R + N G L + + +GG + +V S +
Sbjct: 210 LTGDNALKAKAGETVRMYVGNGGPNLVSSFHVI--GEIFDKVYVEGGKLINENVQSTIVP 267
Query: 292 AGERWDFILNA 302
AG
Sbjct: 268 AGGSAIVEFKV 278
Score = 58.3 bits (141), Expect = 2e-09
Identities = 22/98 (22%), Positives = 31/98 (31%), Gaps = 22/98 (22%)
Query: 496 DANHPFHLHGHPFRVVAMERVAKNITRQDVIDMDAKGLIRRNLKDAPLKDTVTVPDGGFT 555
+ FH+ G F V + + LI N+ + VP GG
Sbjct: 234 NLVSSFHVIGEIFDKVYV---------------EGGKLINENV------QSTIVPAGGSA 272
Query: 556 IIRFHATNPGYWLFHCHIEFH-VETGMALVFKVGEHED 592
I+ F PG + H F G KV E+
Sbjct: 273 IVEFKVDIPGNYTLVDHSIFRAFNKGALGQLKVEGAEN 310
Score = 37.9 bits (88), Expect = 0.009
Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 5/76 (6%)
Query: 77 AVDVCVGDHVIVNLHNGLMEESTSIHWHGHHQVDSPYMDGV----PHLTQCPVPPRSTFR 132
A+ G+ V + + NG +S H G D Y++G ++ VP +
Sbjct: 215 ALKAKAGETVRMYVGNGGPNLVSSFHVIGEI-FDKVYVEGGKLINENVQSTIVPAGGSAI 273
Query: 133 YKFNADSPGTHFWHSH 148
+F D PG + H
Sbjct: 274 VEFKVDIPGNYTLVDH 289
Score = 37.1 bits (86), Expect = 0.017
Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 11/66 (16%)
Query: 546 TVTVPDGGFTII--------RFHATNPGYWLFHCH---IEFHVETGMALVFKVGEHEDMA 594
T T F A PG +++HC + H+ GM + V E +
Sbjct: 102 TGQGGGAAATFTAPGRTSTFSFKALQPGLYIYHCAVAPVGMHIANGMYGLILVEPKEGLP 161
Query: 595 PVPKDF 600
V K+F
Sbjct: 162 KVDKEF 167
>3cg8_A Laccase; oxidoreductase, multicopper blue protein; HET: PG4; 2.68A
{Streptomyces coelicolor}
Length = 343
Score = 102 bits (255), Expect = 7e-24
Identities = 36/277 (12%), Positives = 68/277 (24%), Gaps = 74/277 (26%)
Query: 57 IPADGVKRAITVVNRQLPGPAVDVCVGDHVIVNLHNGLMEESTSIHWHGHHQVDSPYMDG 116
+ + +PGP ++V GD + + N + + S+H HG DG
Sbjct: 58 LADGQMGYGFEKGKASVPGPLIEVNEGDTLHIEFTNTM-DVRASLHVHGLDY--EISSDG 114
Query: 117 VPHLTQCPVPPRSTFRYKFNADSPGT-------------HFWHSHTGSQR------GDGS 157
+ + V P T Y + PG +H H +G
Sbjct: 115 TA-MNKSDVEPGGTRTYTWRTHKPGRRDDGTWRPGSAGYWHYHDHVVGTEHGTGGIRNGL 173
Query: 158 FGAFIIRKPRPREVHAPLYDFDLPEHIMLITDWSHVLGVEMFNAHHHADGDNKPPTILMN 217
+G I+R+ D +H + +FN +
Sbjct: 174 YGPVIVRRKGDVL-----------------PDATHTI---VFNDMTINNRK--------- 204
Query: 218 GKGRFKEFRSNATVTYTPMEVFTVKQGHSYRFRIINAGYLNCPIELSIANHTLTAINSDG 277
F G +I G + H +
Sbjct: 205 ---------------PHTGPDFEATVGDRVEIVMITHGEYYHTFHMH--GHRWADNRTGI 247
Query: 278 GDI---KPISVGSIVSYAGERWD--FILNATHHVGNY 309
+ + ++ + + I G +
Sbjct: 248 LTGPDDPSRVIDNKITGPADSFGFQIIAGEGVGAGAW 284
Score = 73.6 bits (180), Expect = 3e-14
Identities = 22/103 (21%), Positives = 37/103 (35%), Gaps = 21/103 (20%)
Query: 496 DANHPFHLHGHPFRVVAMERVAKNITRQDVIDMDAKGLIRRNLKDAPLKDTVTVPDGG-- 553
+ H FH+HGH + G++ + + D
Sbjct: 228 EYYHTFHMHGHRWADNRT------------------GILTGPDDPSRVIDNKITGPADSF 269
Query: 554 -FTIIRFHATNPGYWLFHCHIEFHVETGMALVFKVGEHEDMAP 595
F II G W++HCH++ H + GM +F V + + P
Sbjct: 270 GFQIIAGEGVGAGAWMYHCHVQSHSDMGMVGLFLVKKPDGTIP 312
>3kw8_A Laccase, putative copper oxidase; two-domain laccase,
oxidoreductase, multicopper blue protein; HET: PG4 PGE;
2.29A {Streptomyces coelicolor}
Length = 276
Score = 98.5 bits (245), Expect = 5e-23
Identities = 28/180 (15%), Positives = 54/180 (30%), Gaps = 31/180 (17%)
Query: 57 IPADGVKRAITVVNRQLPGPAVDVCVGDHVIVNLHNGLMEESTSIHWHGHHQVDSPYMDG 116
+ + +PGP ++V GD + + N + + S+H HG DG
Sbjct: 17 LADGQMGYGFEKGKASVPGPLIEVNEGDTLHIEFTNTM-DVRASLHVHGLDY--EISSDG 73
Query: 117 VPHLTQCPVPPRSTFRYKFNADSP-------------GTHFWHSHTGSQR------GDGS 157
+ + V P T Y + P G +H H +G
Sbjct: 74 TA-MNKSDVEPGGTRTYTWRTHKPGRRDDGTWRPGSAGYWHYHDHVVGTEHGTGGIRNGL 132
Query: 158 FGAFIIRKPRPREVHAPLYDFDLPEHIMLITDWSHVLGVEMFNAHHHADGDNKPPTILMN 217
+G I+R+ H ++ D + A ++ +++
Sbjct: 133 YGPVIVRRKGDVLPD--------ATHTIVFNDMTINNRKPHTGPDFEATVGDRVEIVMIT 184
Score = 72.3 bits (177), Expect = 4e-14
Identities = 23/107 (21%), Positives = 37/107 (34%), Gaps = 23/107 (21%)
Query: 498 NHPFHLHGHPFRVVAMERVAKNITRQDVIDMDAKGLIRRNLKDAPLKDTVTVPDGG---F 554
H FH+HGH + G++ + + D F
Sbjct: 189 YHTFHMHGHRWADNRT------------------GILTGPDDPSRVIDNKITGPADSFGF 230
Query: 555 TIIRFHATNPGYWLFHCHIEFHVETGMALVFKVGEHEDMAPVPKDFP 601
II G W++HCH++ H + GM +F V + +P P
Sbjct: 231 QIIAGEGVGAGAWMYHCHVQSHSDMGMVGLFLV--KKPDGTIPGYEP 275
Score = 34.6 bits (79), Expect = 0.092
Identities = 21/113 (18%), Positives = 36/113 (31%), Gaps = 9/113 (7%)
Query: 66 ITVVNRQLPGPAVDVCVGDHVIVNLHNGLMEESTSIHWHGHH-QVDSPYMDGVPHLTQCP 124
+T+ NR+ + + E + H HGH + + P
Sbjct: 157 MTINNRKPHTGPDFEATVGDRVEIVMITHGEYYHTFHMHGHRWADNRTGILTGPDDPSRV 216
Query: 125 -----VPPRSTFRYKFNAD---SPGTHFWHSHTGSQRGDGSFGAFIIRKPRPR 169
P +F ++ A G +H H S G G F+++KP
Sbjct: 217 IDNKITGPADSFGFQIIAGEGVGAGAWMYHCHVQSHSDMGMVGLFLVKKPDGT 269
>2j5w_A Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper
transport, copper, transport, polymorphism,
glycoprotein, multi-copper oxidase; HET: NAG; 2.80A
{Homo sapiens} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3
b.6.1.3 PDB: 1kcw_A*
Length = 1065
Score = 101 bits (253), Expect = 2e-22
Identities = 38/270 (14%), Positives = 71/270 (26%), Gaps = 34/270 (12%)
Query: 62 VKRAITVVNRQLPGPAVDVCVGDHVIVNLHNGLMEESTSIHWHGHHQVDSPYMDGVPH-- 119
V GP + GD V V+L N + H HG +G +
Sbjct: 81 RTTIEKPVWLGFLGPIIKAETGDKVYVHLKNLA-SRPYTFHSHGITY--YKEHEGAIYPD 137
Query: 120 ------LTQCPVPPRSTFRYKFNADSPG----------THFWHSHTGS--QRGDGSFGAF 161
V P + Y A T +HSH + G G
Sbjct: 138 NTTDFQRADDKVYPGEQYTYMLLATEEQSPGEGDGNCVTRIYHSHIDAPKDIASGLIGPL 197
Query: 162 IIRKPRPREVHAPLYDFDLPEHIMLITDWSHVLGVEMFNAHHHADGDNKPPTILMNGKGR 221
II K + D E +++ + + + + + +
Sbjct: 198 IICKKDSLDKEKE-KHID-REFVVMFSVVDENFSWYLEDNIKTYCSEPEKVDKDNEDFQQ 255
Query: 222 FKEFRSNATVTYTPMEVFTVKQGHSYRFRIINAGYLNCPIELSIANHTLTAINSDGGDIK 281
S T+ + ++ ++ + G LT K
Sbjct: 256 SNRMYSVNGYTFGSLSGLSMCAEDRVKWYLFGMGNEVDVHAAFFHGQALTN--------K 307
Query: 282 PISVGSIVSYAGERWDFILNATHHVGNYWI 311
+ +I + +D + A + G + +
Sbjct: 308 NYRIDTINLFPATLFDAYMVA-QNPGEWML 336
Score = 100 bits (249), Expect = 7e-22
Identities = 30/256 (11%), Positives = 61/256 (23%), Gaps = 30/256 (11%)
Query: 61 GVKRAITVVNRQLPGPAVDVCVGDHVIVNLHNGLMEESTSIHWHGHHQVDSPYMDGVPHL 120
V+R + + GP + VGD V + N SIH HG
Sbjct: 795 PVERKAEEEHLGILGPQLHADVGDKVKIIFKNMA-TRPYSIHAHGVQ---------TESS 844
Query: 121 TQCPVPPRSTFRYKFNAD----------SPGTHFWHSHTGS--QRGDGSFGAFIIRKPRP 168
T P P T Y + + ++S G G I+ +
Sbjct: 845 TVTPTLPGETLTYVWKIPERSGAGTEDSACIPWAYYSTVDQVKDLYSGLIGPLIVCRRPY 904
Query: 169 REVHAPLYDFDLPEHIMLITDWSHVLGVEMFNAHHHADGDNKPPTILMNGKGRFKEFRSN 228
+V P + ++ + + + +
Sbjct: 905 LKVFNPRRKLEFALLFLVFDENESWYLDDNIKTYSDHPEKVNKDDEEFIESNKMHAIN-- 962
Query: 229 ATVTYTPMEVFTVKQGHSYRFRIINAGYLNCPIELSIANHTLTAINSDGGDIKPISVGSI 288
+ ++ T+ G + ++ G + H+ + +
Sbjct: 963 -GRMFGNLQGLTMHVGDEVNWYLMGMGNEIDLHTVHFHGHSFQYKHRGVYSSDVFDIF-- 1019
Query: 289 VSYAGERWDFILNATH 304
G +
Sbjct: 1020 ---PGTYQTLEMFPRT 1032
Score = 81.9 bits (201), Expect = 3e-16
Identities = 34/264 (12%), Positives = 66/264 (25%), Gaps = 33/264 (12%)
Query: 70 NRQLPGPAVDVCVGDHVIVNLHNGLMEESTSIHWHGHH----------QVDSPYMDGVPH 119
+ + GP + VGD + V HN SI G +
Sbjct: 445 HLGILGPVIWAEVGDTIRVTFHNKGA-YPLSIEPIGVRFNKNNEGTYYSPNYNPQSRSVP 503
Query: 120 LTQCPVPPRSTFRYKFNADSPG----------THFWHSHTGSQRG--DGSFGAFIIRKPR 167
+ V P TF Y++ ++S + G G I K
Sbjct: 504 PSASHVAPTETFTYEWTVPKEVGPTNADPVCLAKMYYSAVDPTKDIFTGLIGPMKICKKG 563
Query: 168 PREVHAPLYDFDLPEHIMLITDWSHVLGVEMFNAHHHADGDNKPPTILMNGKGRFKEFRS 227
+ D D E + T + + + + + S
Sbjct: 564 SLHANGRQKDVD-KEFYLFPTVFDENESLLLEDNIRMFTTAPDQVDKEDEDFQESNKMHS 622
Query: 228 NATVTYTPMEVFTVKQGHSYRFRIINAGYLNCPIELSIANHTLTAINSDGGDIKPISVGS 287
Y T+ +G S + + +AG + + +T + +
Sbjct: 623 MNGFMYGNQPGLTMCKGDSVVWYLFSAGNEADVHGIYFSGNTYL--------WRGERRDT 674
Query: 288 IVSYAGERWDFILNATHHVGNYWI 311
+ + G + +
Sbjct: 675 ANLFPQTSLTLHMWPD-TEGTFNV 697
Score = 72.3 bits (176), Expect = 3e-13
Identities = 23/113 (20%), Positives = 34/113 (30%), Gaps = 27/113 (23%)
Query: 483 VVELIIIDEGVAYDANHPFHLHGHPFRVVAMERVAKNITRQDVIDMDAKGLIRRNLKDAP 542
V ++ G H H HGH F+
Sbjct: 979 EVNWYLMGMG-NEIDLHTVHFHGHSFQYKHR--------------------------GVY 1011
Query: 543 LKDTVTVPDGGFTIIRFHATNPGYWLFHCHIEFHVETGMALVFKVGEHEDMAP 595
D + G + + PG WL HCH+ H+ GM + V ++ED
Sbjct: 1012 SSDVFDIFPGTYQTLEMFPRTPGIWLLHCHVTDHIHAGMETTYTVLQNEDTKS 1064
Score = 56.9 bits (136), Expect = 2e-08
Identities = 22/116 (18%), Positives = 36/116 (31%), Gaps = 9/116 (7%)
Query: 498 NHPFHLHGHPFRVVAMERV----AKNITRQDVIDMDAKGLIRRNLKDAPLK-DTVTVPDG 552
N + A +RV DV G L + + DT+ +
Sbjct: 263 NGYTFGSLSGLSMCAEDRVKWYLFGMGNEVDVHAAFFHGQ---ALTNKNYRIDTINLFPA 319
Query: 553 GFTIIRFHATNPGYWLFHCHIEFHVETGMALVFKV-GEHEDMAPVPKDFPTCGDYY 607
A NPG W+ C H++ G+ F+V ++ + YY
Sbjct: 320 TLFDAYMVAQNPGEWMLSCQNLNHLKAGLQAFFQVQECNKSSSKDNIRGKHVRHYY 375
Score = 56.1 bits (134), Expect = 3e-08
Identities = 13/123 (10%), Positives = 25/123 (20%), Gaps = 29/123 (23%)
Query: 495 YDANHPFHLHGHPFRVVAMERVAKNITRQDVIDMDAKGLIRRNLKDAPLKDTVTVPDGGF 554
H + G+ + +DT +
Sbjct: 652 EADVHGIYFSGNTYLWRGER-----------------------------RDTANLFPQTS 682
Query: 555 TIIRFHATNPGYWLFHCHIEFHVETGMALVFKVGEHEDMAPVPKDFPTCGDYYNVDSVED 614
+ G + C H GM + V + + + YY +
Sbjct: 683 LTLHMWPDTEGTFNVECLTTDHYTGGMKQKYTVNQCRRQSEDSTFYLGERTYYIAAVEVE 742
Query: 615 EDN 617
D
Sbjct: 743 WDY 745
Score = 56.1 bits (134), Expect = 3e-08
Identities = 35/235 (14%), Positives = 69/235 (29%), Gaps = 36/235 (15%)
Query: 80 VCVGDHVIVNLHN-GLMEESTSIHWHGH-HQVDSPYMDGVPHLTQCPVPPRSTFRYKFNA 137
+C GD V+ L + G + I++ G+ + D + P+++
Sbjct: 636 MCKGDSVVWYLFSAGNEADVHGIYFSGNTYLWRGERRDTAN------LFPQTSLTLHMWP 689
Query: 138 DSPGTHFWHSHTGSQRGDGSFGAFIIRKPRPREVHAPLYDFDLPEHIMLI-TDWSHVLGV 196
D+ GT T G + + + R + + Y + +I + +W +
Sbjct: 690 DTEGTFNVECLTTDHYTGGMKQKYTVNQCRRQSEDSTFYLGERTYYIAAVEVEWDYSPQR 749
Query: 197 EMFNAHHHADGDNKPPTILMNG---------KGRFKEFRSNATVTYTPME---------- 237
E HH N L G K ++++ + +
Sbjct: 750 EWEKELHHLQEQNVSNAFLDKGEFYIGSKYKKVVYRQYTDSTFRVPVERKAEEEHLGILG 809
Query: 238 -VFTVKQGHSYRFRIINAGYLNCPIELSIANHTLTAINSDGGDIKPISVGSIVSY 291
G + N SI H + +S P G ++Y
Sbjct: 810 PQLHADVGDKVKIIFKNMA----TRPYSIHAHGVQTESSTVTPTLP---GETLTY 857
Score = 42.6 bits (99), Expect = 4e-04
Identities = 18/96 (18%), Positives = 32/96 (33%), Gaps = 3/96 (3%)
Query: 76 PAVDVCVGDHVIVNLHN-GLMEESTSIHWHGHHQVDSPYMDGVPHLTQCPVPPRSTFRYK 134
+ + VGD V L G + ++H+HGH GV + P + +
Sbjct: 970 QGLTMHVGDEVNWYLMGMGNEIDLHTVHFHGHSFQYKH--RGVYSSDVFDIFPGTYQTLE 1027
Query: 135 FNADSPGTHFWHSHTGSQRGDGSFGAFIIRKPRPRE 170
+PG H H G + + + +
Sbjct: 1028 MFPRTPGIWLLHCHVTDHIHAGMETTYTVLQNEDTK 1063
Score = 28.4 bits (62), Expect = 9.5
Identities = 12/125 (9%), Positives = 30/125 (24%), Gaps = 6/125 (4%)
Query: 496 DANHPFHLHGHPFRVVAMERVAKNITRQDVIDMDAKGLIRRNLKDAPLKDTVTVPDGGFT 555
G F + + + TV G
Sbjct: 470 AYPLSIEPIGVRFNKNNEGTYYSPNYNPQSRSVPPSASHVAPTETFTYEWTVPKEVGPTN 529
Query: 556 IIRFHATNPGYWLFHCHIEF--HVETGMALVFKVGEHEDMAPVPKDFPTCGDYYNVDSVE 613
+++ ++ + TG+ K+ + + + ++Y +V
Sbjct: 530 ADPVCLA----KMYYSAVDPTKDIFTGLIGPMKICKKGSLHANGRQKDVDKEFYLFPTVF 585
Query: 614 DEDNE 618
DE+
Sbjct: 586 DENES 590
>2r7e_A Coagulation factor VIII; ceruloplasmin fold, cupper protein fold,
C2 domain fold, ACU blood coagulation, disease mutation,
glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens}
PDB: 3cdz_A*
Length = 742
Score = 100 bits (249), Expect = 4e-22
Identities = 36/258 (13%), Positives = 70/258 (27%), Gaps = 27/258 (10%)
Query: 63 KRAITVVNRQLPGPAVDVCVGDHVIVNLHNGLMEESTSIHWHGHHQV----DSPYMDGVP 118
R + GP + VGD +++ N +I+ HG V GV
Sbjct: 439 TREAIQHESGILGPLLYGEVGDTLLIIFKNQASR-PYNIYPHGITDVRPLYSRRLPKGVK 497
Query: 119 HLTQCPVPPRSTFRYKFNAD----------SPGTHFWHSHTGSQR--GDGSFGAFIIRKP 166
HL P+ P F+YK+ T ++ S +R G G +I
Sbjct: 498 HLKDFPILPGEIFKYKWTVTVEDGPTKSDPRCLTRYYSSFVNMERDLASGLIGPLLICYK 557
Query: 167 RPREVHAPLYDFDLPEHIMLITDWSHVLGVEMFNAHHHADGDNKPPTILMNGKGRFKEFR 226
+ D I+ + N +
Sbjct: 558 ESVDQRGNQIMSDKRNVILFSVFDENRSWYLTENIQRFLPNPAGVQLEDPEFQASNIMHS 617
Query: 227 SNATVTYTPMEVFTVKQGHSYRFRIINAGYLNCPIELSIANHTLTAINSDGGDIKPISVG 286
N V + +V + I++ G + + + +T K +
Sbjct: 618 INGYVFDSLQ--LSVCLHEVAYWYILSIGAQTDFLSVFFSGYTFK--------HKMVYED 667
Query: 287 SIVSYAGERWDFILNATH 304
++ + ++ +
Sbjct: 668 TLTLFPFSGETVFMSMEN 685
Score = 87.8 bits (216), Expect = 4e-18
Identities = 37/255 (14%), Positives = 73/255 (28%), Gaps = 32/255 (12%)
Query: 73 LPGPAVDVCVGDHVIVNLHNGLMEESTSIHWHGHHQVD----SPYMDGVPHLTQC--PVP 126
L GP + V D V++ L N S+H G + Y D + V
Sbjct: 72 LLGPTIQAEVYDTVVITLKNMAS-HPVSLHAVGVSYWKASEGAEYDDQTSQREKEDDKVF 130
Query: 127 PRSTFRYKFNADSP----------GTHFWHSHTGS--QRGDGSFGAFIIRKPRPREVHAP 174
P + Y + T+ + SH G GA ++ A
Sbjct: 131 PGGSHTYVWQVLKENGPMASDPLCLTYSYLSHVDLVKDLNSGLIGALLV---CREGSLAK 187
Query: 175 LYDFDLPEHIMLITDWSHVLGVEMFNAHHHADGDNKPPTILMNGKGRFKEFRSNATVTYT 234
L + I+L + + + H ++ + + +
Sbjct: 188 EKTQTLHKFILLFAVF------DEGKSWHSETKNSLMQDRDAASARAWPKMHTVNGYVNR 241
Query: 235 PMEVFTVKQGHSYRFRIINAGYLNCPIELSIANHTLTAINSDGG--DIKPISVGSIVSYA 292
+ S + +I G + + HT N +I PI+ + +
Sbjct: 242 SLPGLIGCHRKSVYWHVIGMGTTPEVHSIFLEGHTFLVRNHRQASLEISPITFLTAQTLL 301
Query: 293 GE--RWDFILNATHH 305
+ ++ + + H
Sbjct: 302 MDLGQFLLFCHISSH 316
Score = 62.7 bits (151), Expect = 2e-10
Identities = 17/142 (11%), Positives = 43/142 (30%), Gaps = 2/142 (1%)
Query: 544 KDTVTVPDGGFTIIRFHATNPGYWLFHCHIEFHVETGMALVFKVGEHEDMAPVPKDFPTC 603
+ ++ + F + + G +L CHI H GM KV + +
Sbjct: 284 QASLEISPITFLTAQTLLMDLGQFLLFCHISSHQHDGMEAYVKVDSCPEEPQLRMKNNEE 343
Query: 604 GDYYNVDSVEDEDNEIGEIGEKKEVTTQGSVAGDEIIPGSDDL--DKKVQYEVMPTDDVR 661
+ Y+ D + E + + + Q + ++ ++ P
Sbjct: 344 AEDYDDDLTDSEMDVVRFDDDNSPSFIQIRSVAKKHPKTWVHYIAAEEEDWDYAPLVLAP 403
Query: 662 VNTSDEHLDFTHNRNILDSRFW 683
+ S + + + ++
Sbjct: 404 DDRSYKSQYLNNGPQRIGRKYK 425
Score = 61.6 bits (148), Expect = 6e-10
Identities = 23/148 (15%), Positives = 39/148 (26%), Gaps = 30/148 (20%)
Query: 452 DESTFCSNLTTDRCADSYCECTNVVNVPLESVVELIIIDEGVAYDANHPFHLHGHPFRVV 511
E + Y + ++V L V I+ G D G+ F+
Sbjct: 604 LEDPEFQASNIMHSINGYVFDSLQLSVCLHEVAYWYILSIGAQTD-FLSVFFSGYTFKHK 662
Query: 512 AMERVAKNITRQDVIDMDAKGLIRRNLKDAPLKDTVTVPDGGFTIIRFHATNPGYWLFHC 571
+ +DT+T+ + NPG W+ C
Sbjct: 663 MVY-----------------------------EDTLTLFPFSGETVFMSMENPGLWILGC 693
Query: 572 HIEFHVETGMALVFKVGEHEDMAPVPKD 599
H GM + KV + +
Sbjct: 694 HNSDFRNRGMTALLKVSSCDKNTGDYYE 721
Score = 42.7 bits (99), Expect = 4e-04
Identities = 22/172 (12%), Positives = 44/172 (25%), Gaps = 9/172 (5%)
Query: 80 VCVGDHV-IVNLHNGLMEESTSIHWHGHH-QVDSPYMDGVPHLTQCPVPPRSTFRYKFNA 137
C V + G E SI GH V + + + P + +
Sbjct: 248 GCHRKSVYWHVIGMGTTPEVHSIFLEGHTFLVRNHRQASLE------ISPITFLTAQTLL 301
Query: 138 DSPGTHFWHSHTGSQRGDGSFGAFIIRKPRPREVHAPLYDFDLPEHIMLITDWSHVLGVE 197
G H S + DG + P E + + + E S + V
Sbjct: 302 MDLGQFLLFCHISSHQHDGMEAYVKV-DSCPEEPQLRMKNNEEAEDYDDDLTDSEMDVVR 360
Query: 198 MFNAHHHADGDNKPPTILMNGKGRFKEFRSNATVTYTPMEVFTVKQGHSYRF 249
+ + + + Y P+ + + + ++
Sbjct: 361 FDDDNSPSFIQIRSVAKKHPKTWVHYIAAEEEDWDYAPLVLAPDDRSYKSQY 412
>1sdd_A Coagulation factor V; copper-binding protein, cofactor, blood
clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3
b.6.1.3
Length = 306
Score = 95.2 bits (236), Expect = 1e-21
Identities = 34/257 (13%), Positives = 63/257 (24%), Gaps = 51/257 (19%)
Query: 73 LPGPAVDVCVGDHVIVNLHNGLMEESTSIHWHG----HHQVDSPYMDGVP--HLTQCPVP 126
L GP + VGD + V+ N + SIH G + Y D V
Sbjct: 57 LLGPTLYAEVGDIMKVHFKNKA-HKPLSIHAQGIKYSKFSEGASYSDHTLPMEKMDDAVA 115
Query: 127 PRSTFRYKFNAD----------SPGTHFWHSHTGS--QRGDGSFGAFIIRKPRPREVHAP 174
P + Y++ TH ++S+ G G +I K
Sbjct: 116 PGQEYTYEWIISEHSGPTHDDPPCLTHIYYSYVNLVEDFNSGLIGPLLICKKGTLTEDGT 175
Query: 175 LYDFDLPEHIMLITDWSHVLGVEMFNAHHHADGDNKPPTILMNGKGRFKEFRSNATVTYT 234
F+ +H+++ + ++ +
Sbjct: 176 QKMFE-KQHVLMFAVFDESKSWNQTSSLMYTVNG----------------------YVNG 212
Query: 235 PMEVFTVKQGHSYRFRIINAGYLNCPIELSIANHTLTAINSDGGDIKPISVGSIVSYAGE 294
M TV + +I + L + +I +
Sbjct: 213 TMPDITVCAHDHISWHLIGMSSGPELFSIHFNGQVLE--------QNHHKISAITLVSAT 264
Query: 295 RWDFILNATHHVGNYWI 311
+ G + I
Sbjct: 265 STTANMTV-SPEGRWTI 280
Score = 61.7 bits (149), Expect = 2e-10
Identities = 10/90 (11%), Positives = 17/90 (18%), Gaps = 29/90 (32%)
Query: 498 NHPFHLHGHPFRVVAMERVAKNITRQDVIDMDAKGLIRRNLKDAPLKDTVTVPDGGFTII 557
H +G + +T+ T
Sbjct: 238 LFSIHFNGQVLEQNHHK-----------------------------ISAITLVSATSTTA 268
Query: 558 RFHATNPGYWLFHCHIEFHVETGMALVFKV 587
+ G W I H + GM +
Sbjct: 269 NMTVSPEGRWTIASLIPRHFQAGMQAYIDI 298
Score = 45.1 bits (106), Expect = 4e-05
Identities = 15/92 (16%), Positives = 28/92 (30%), Gaps = 8/92 (8%)
Query: 76 PAVDVCVGDHVIVNLHN-GLMEESTSIHWHGHH-QVDSPYMDGVPHLTQCPVPPRSTFRY 133
P + VC DH+ +L E SIH++G + + + + + ++
Sbjct: 215 PDITVCAHDHISWHLIGMSSGPELFSIHFNGQVLEQNHHKISAIT------LVSATSTTA 268
Query: 134 KFNADSPGTHFWHSHTGSQRGDGSFGAFIIRK 165
G S G I+
Sbjct: 269 NMTVSPEGRWTIASLIPRHFQAGMQAYIDIKN 300
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification,
oxidoreductase; 2.20A {Hyphomicrobium denitrificans}
Length = 447
Score = 93.0 bits (231), Expect = 3e-20
Identities = 46/250 (18%), Positives = 73/250 (29%), Gaps = 28/250 (11%)
Query: 59 ADGVKRAITVVNRQLPGPAVDVCVGDHVIVNLHNGLMEE-STSIHWHGHHQVDSPYMDGV 117
D N ++PGP + V VGD V ++L N S+ +HG G
Sbjct: 178 DDNTTYTYWTFNGKVPGPFLRVRVGDTVELHLKNHKDSLMVHSVDFHGATG-----PGGA 232
Query: 118 PHLTQCPVPPRSTFRYKFNADSPGTHFWHSHTGS---QRGDGSFGAFIIRKPRPREVHAP 174
TQ P F A PG + +H T S +G +G ++ P
Sbjct: 233 AAFTQ--TDPGEETVVTFKALIPGIYVYHCATPSVPTHITNGMYGLLLVE-PEGGLPQVD 289
Query: 175 LYDFDLPEHIMLITDWSHVLGVEMFNAHHHADGDNKPPTILMNGKGRFKEFRSNATVTYT 234
+ + I + + G + + + + KP L NG T
Sbjct: 290 REFYVMQGEIYTVKSFGTS-GEQEMD--YEKLINEKPEYFLFNGSVGS----------LT 336
Query: 235 PMEVFTVKQGHSYRFRIINAGYLNCPIELSIANHTLTAINSDGGDIKPISVGS--IVSYA 292
G + R G N + + S G + P +G +
Sbjct: 337 RSHPLYASVGETVRIFFGVGGP-NFTSSFHVIGEIFDHVYSLGSVVSPPLIGVQTVSVPP 395
Query: 293 GERWDFILNA 302
G
Sbjct: 396 GGATIVDFKI 405
Score = 63.0 bits (153), Expect = 1e-10
Identities = 20/98 (20%), Positives = 31/98 (31%), Gaps = 19/98 (19%)
Query: 495 YDANHPFHLHGHPFRVVAMERVAKNITRQDVIDMDAKGLIRRNLKDAPLKDTVTVPDGGF 554
+ FH+ G F V + V TV+VP GG
Sbjct: 358 PNFTSSFHVIGEIFDHVYSLGSVVSPPLIGV-------------------QTVSVPPGGA 398
Query: 555 TIIRFHATNPGYWLFHCHIEFHVETGMALVFKVGEHED 592
TI+ F G ++ H +E G+ V ++
Sbjct: 399 TIVDFKIDRAGRYILVDHALSRLEHGLVGFLNVDGPKN 436
Score = 59.5 bits (144), Expect = 2e-09
Identities = 18/108 (16%), Positives = 30/108 (27%), Gaps = 12/108 (11%)
Query: 74 PGPAVDVCVGDHVIVNLHNGLMEESTSIHWHGHHQVDSPYMDGVPHLTQCPVPPRSTFRY 133
P + V G+ V VNL N H +D + ++ +
Sbjct: 53 INPTLVVHEGETVQVNLVN------GEGAQHDVV------VDQYAARSAIVNGKNASSTF 100
Query: 134 KFNADSPGTHFWHSHTGSQRGDGSFGAFIIRKPRPREVHAPLYDFDLP 181
F A G ++ R G G + E+ + D
Sbjct: 101 SFVASKVGEFNYYCSIAGHRQAGMEGNIQVLPGNRAEMKSSGADITRD 148
Score = 38.3 bits (89), Expect = 0.007
Identities = 24/111 (21%), Positives = 34/111 (30%), Gaps = 8/111 (7%)
Query: 71 RQLPG-PAVDVCVGDHVIVNLHNGLMEESTSIHWHGHHQVDSPYMDG---VPHLTQC--- 123
L + VG+ V + G ++S H G D Y G P L
Sbjct: 333 GSLTRSHPLYASVGETVRIFFGVGGPNFTSSFHVIGEI-FDHVYSLGSVVSPPLIGVQTV 391
Query: 124 PVPPRSTFRYKFNADSPGTHFWHSHTGSQRGDGSFGAFIIRKPRPREVHAP 174
VPP F D G + H S+ G G + P+ +
Sbjct: 392 SVPPGGATIVDFKIDRAGRYILVDHALSRLEHGLVGFLNVDGPKNDSIMHE 442
Score = 34.5 bits (79), Expect = 0.11
Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 13/67 (19%)
Query: 547 VTVPDG--GFTII--------RFHATNPGYWLFHCH---IEFHVETGMALVFKVGEHEDM 593
T P G FT F A PG +++HC + H+ GM + V +
Sbjct: 226 ATGPGGAAAFTQTDPGEETVVTFKALIPGIYVYHCATPSVPTHITNGMYGLLLVEPEGGL 285
Query: 594 APVPKDF 600
V ++F
Sbjct: 286 PQVDREF 292
Score = 34.5 bits (79), Expect = 0.13
Identities = 10/94 (10%), Positives = 24/94 (25%), Gaps = 6/94 (6%)
Query: 550 PDGGFTI-IRFHATNPGYWLFHCHIEFHVETGMALVFKVGEHEDMAPVPKDFPTCGDYYN 608
+ F A+ G + ++C I H + GM +V D +
Sbjct: 92 NGKNASSTFSFVASKVGEFNYYCSIAGHRQAGMEGNIQVLPGNRAEMKSSGADITRDPAD 151
Query: 609 VDSVEDEDNEIGEIGEKKEVTTQGSVAGDEIIPG 642
+ + + + ++
Sbjct: 152 LPGPIGPRQ-----AKTVRIDLETVEVKGQLDDN 180
>2bw4_A Copper-containing nitrite reductase; oxidoreductase,
denitrification, catalysis, enzyme mechanism, nitrate
assimilation; 0.90A {Achromobacter cycloclastes} SCOP:
b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A
1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 2y1a_A 1kcb_A 1rzp_A*
1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A ...
Length = 340
Score = 90.7 bits (225), Expect = 6e-20
Identities = 32/205 (15%), Positives = 56/205 (27%), Gaps = 15/205 (7%)
Query: 57 IPADGVKRAITVVNRQLPGPAVDVCVGDHVIVNLHNGLMEESTSIHWHGHHQVDSPY-MD 115
I +G + N +PGP + V D+V + L N T+ H +D
Sbjct: 52 IDREGTEIHAMTFNGSVPGPLMVVHENDYVELRLIN----PDTNTLLHN---IDFHAATG 104
Query: 116 GVPHLTQCPVPPRSTFRYKFNADSPGTHFWHSHTGS----QRGDGSFGAFIIRKPRPREV 171
+ V P +F A PG +H G GA ++ +
Sbjct: 105 ALGGGALTQVNPGEETTLRFKATKPGVFVYHCAPEGMVPWHVTSGMNGAIMVLPRDGLKD 164
Query: 172 HAPLYDFDLPEHIMLITDWSHVLGVEMFNAHHHADGDNKPPTILMNGKGRFKEFRSNATV 231
+ + D+ + G+ + N V
Sbjct: 165 EKGQPLTYDKIYYVGEQDFYVPKDEAGNYKKYETPGEAYEDAVKAMRTLTPTHIVFNGAV 224
Query: 232 -TYTPMEVFTVKQGHSYRFRIINAG 255
T T G R ++++
Sbjct: 225 GALTGDHALTAAVGE--RVLVVHSQ 247
Score = 45.6 bits (108), Expect = 3e-05
Identities = 21/107 (19%), Positives = 28/107 (26%), Gaps = 23/107 (21%)
Query: 499 HPFHLHGHPFRVVAMERVAKNITRQDVIDMDAKGLIRRNLKDAPLKDTVTVPDGGFTIIR 558
HL G V +N D +T +P G
Sbjct: 252 TRPHLIGGHGDYVWATGKFRNPPDLDQ-------------------ETWLIPGGTAGAAF 292
Query: 559 FHATNPGYWLFHCHIEFH-VETGMALVFKVGEHED---MAPVPKDFP 601
+ PG + + H E G A FKV + M V K
Sbjct: 293 YTFRQPGVYAYVNHNLIEAFELGAAGHFKVTGEWNDDLMTSVVKPAS 339
Score = 42.2 bits (99), Expect = 4e-04
Identities = 26/104 (25%), Positives = 37/104 (35%), Gaps = 13/104 (12%)
Query: 546 TVTVPDGGFTII--------RFHATNPGYWLFHCH----IEFHVETGMALVFKVGEHEDM 593
T + G T + RF AT PG +++HC + +HV +GM + D
Sbjct: 103 TGALGGGALTQVNPGEETTLRFKATKPGVFVYHCAPEGMVPWHVTSGMNGAI-MVLPRDG 161
Query: 594 APVPKDFPTCGDYYNVDSVEDEDNEIGEIGEKKEVTTQGSVAGD 637
K P D +D E G K+ T G D
Sbjct: 162 LKDEKGQPLTYDKIYYVGEQDFYVPKDEAGNYKKYETPGEAYED 205
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification;
HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3
b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A
1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A*
2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X*
2jl3_A* ...
Length = 336
Score = 84.1 bits (208), Expect = 9e-18
Identities = 39/194 (20%), Positives = 60/194 (30%), Gaps = 19/194 (9%)
Query: 70 NRQLPGPAVDVCVGDHVIVNLHNGLMEESTSIHWHGHHQVDSP-YMDGVPHLTQCPVPPR 128
N +PGP + V GD+V + L N +T+ H VD + V P
Sbjct: 59 NGSMPGPTLVVHEGDYVQLTLVN----PATNAMPHN---VDFHGATGALGGAKLTNVNPG 111
Query: 129 STFRYKFNADSPGTHFWHSHTGS----QRGDGSFGAFII--RKPRPREVHAPLYDFDLPE 182
+F AD GT +H G G ++ R PL +D
Sbjct: 112 EQATLRFKADRSGTFVYHCAPEGMVPWHVVSGMSGTLMVLPRDGLKDPQGKPL-HYDRAY 170
Query: 183 HIMLITDWSHVLGVEMFNAHHHADGDNKPPTILMNGKGRFKEFRSNATV-TYTPMEVFTV 241
I D G + + ++ T+ + N V T T
Sbjct: 171 TIGE-FDLYIPKGPDGKYKDYATLAESYGDTVQVMRTLTPSHIVFNGKVGALTGANALTA 229
Query: 242 KQGHSYRFRIINAG 255
K G +I++
Sbjct: 230 KVGE--TVLLIHSQ 241
Score = 47.1 bits (112), Expect = 1e-05
Identities = 17/97 (17%), Positives = 24/97 (24%), Gaps = 24/97 (24%)
Query: 499 HPFHLHGHPFRVVAMERVAKNITRQDVIDMDAKGLIRRNLKDAPLKD--TVTVPDGGFTI 556
HL G V G + P +D T + G
Sbjct: 246 TRPHLIGGHGDWVWET-----------------G----KFANPPQRDLETWFIRGGSAGA 284
Query: 557 IRFHATNPGYWLFHCHIEFH-VETGMALVFKVGEHED 592
+ PG + + H E G A KV +
Sbjct: 285 ALYTFKQPGVYAYLNHNLIEAFELGAAGHIKVEGKWN 321
Score = 39.0 bits (91), Expect = 0.004
Identities = 24/104 (23%), Positives = 36/104 (34%), Gaps = 13/104 (12%)
Query: 546 TVTVPDGGFTII--------RFHATNPGYWLFHCH----IEFHVETGMALVFKVGEHEDM 593
T + T + RF A G +++HC + +HV +GM+ V D
Sbjct: 97 TGALGGAKLTNVNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSGMSGTLMV-LPRDG 155
Query: 594 APVPKDFPTCGDYYNVDSVEDEDNEIGEIGEKKEVTTQGSVAGD 637
P+ P D D G G+ K+ T GD
Sbjct: 156 LKDPQGKPLHYDRAYTIGEFDLYIPKGPDGKYKDYATLAESYGD 199
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating
mechanism, electron oxidoreductase; 1.46A {Rhodobacter
sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A
1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A
Length = 333
Score = 71.8 bits (176), Expect = 1e-13
Identities = 25/203 (12%), Positives = 50/203 (24%), Gaps = 14/203 (6%)
Query: 59 ADGVKRAITVVNRQLPGPAVDVCVGDHVIVNLHNGLMEESTSIHWHGHHQVDSPYMDGVP 118
+ + +PGP + V GD+V + L N + H + +
Sbjct: 47 DEDAYLQAMTFDGSIPGPLMIVHEGDYVELTLIN----PPENTMPHNIDFHAA--TGALG 100
Query: 119 HLTQCPVPPRSTFRYKFNADSPGTHFWHSHTGS-----QRGDGSFGAFIIRKPRPREVHA 173
+ P +F A G +H G G G ++ + H
Sbjct: 101 GGGLTLINPGEKVVLRFKATRAGAFVYHCAPGGPMIPWHVVSGMAGCIMVLPRDGLKDHE 160
Query: 174 PLYDFDLPEHIMLITDWSHVLGVEMFNAHHHADGDNKPPTILMNGKGRFKEFRSNATV-T 232
+ + +D + + + + N V
Sbjct: 161 GKPVRYDTVYYIGESDHYIPKDEDGTYMRFSDPSEGYEDMVAVMDTLIPSHIVFNGAVGA 220
Query: 233 YTPMEVFTVKQGHSYRFRIINAG 255
T K G +++
Sbjct: 221 LTGEGALKAKVGD--NVLFVHSQ 241
Score = 47.9 bits (114), Expect = 6e-06
Identities = 15/95 (15%), Positives = 23/95 (24%), Gaps = 20/95 (21%)
Query: 499 HPFHLHGHPFRVVAMERVAKNITRQDVIDMDAKGLIRRNLKDAPLKDTVTVPDGGFTIIR 558
HL G +V N +D+ +T + G
Sbjct: 246 SRPHLIGGHGDLVWETGKFHNAPERDL-------------------ETWFIRGGTAGAAL 286
Query: 559 FHATNPGYWLFHCHIEFH-VETGMALVFKVGEHED 592
+ PG + + H V G V D
Sbjct: 287 YKFLQPGVYAYVNHNLIEAVHKGATAHVLVEGEWD 321
Score = 37.5 bits (87), Expect = 0.011
Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 11/70 (15%)
Query: 548 TVPDGGFTIIRFHATNPGYWLFHCH-----IEFHVETGMALVFKVGEHEDMAPVPKDFPT 602
+ G ++RF AT G +++HC I +HV +GMA V P
Sbjct: 106 LINPGEKVVLRFKATRAGAFVYHCAPGGPMIPWHVVSGMAGCIMV------LPRDGLKDH 159
Query: 603 CGDYYNVDSV 612
G D+V
Sbjct: 160 EGKPVRYDTV 169
>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood
clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3
b.6.1.3 b.18.1.2 b.18.1.2
Length = 647
Score = 68.6 bits (167), Expect = 3e-12
Identities = 38/296 (12%), Positives = 82/296 (27%), Gaps = 29/296 (9%)
Query: 73 LPGPAVDVCVGDHVIVNLHNGLMEESTSIHWHG-HHQVDS---PYMDGVP--HLTQCPVP 126
+ GP + V D + V N S+H HG ++ S Y D P +
Sbjct: 66 ILGPVIRAEVDDVIQVRFKNLA-SRPYSLHAHGLSYEKSSEGKTYEDDSPEWFKEDNAIQ 124
Query: 127 PRSTFRYKFNAD----------SPGTHFWHSHTGSQRGD--GSFGAFIIRKPRPREVHAP 174
P T+ Y ++A + ++S ++ G G +I + +
Sbjct: 125 PNKTYTYVWHATTRSGPENPGSACRAWAYYSAVNPEKDIHSGLIGPLLICRKGTLDKETN 184
Query: 175 LYDFDLPEHIMLITDWSHVLGVEMFNAHHHADGDNKPPTILMNGKGRFKEFRSNATVTYT 234
+ D+ E ++L + + + ++ + + EF + + Y
Sbjct: 185 MPV-DMREFVLLFMVF------DEKKSWYYDKKPTRSWRRASSEVKNSHEFHAINGMIYN 237
Query: 235 PMEVFTVKQGHSYRFRIINAGYLNCPIELSIANHTLTAINSDGG--DIKPISVGSIVSYA 292
+ + + R ++N G + TL + + P+ GS +
Sbjct: 238 -LPGLRMYEQEWVRLHLLNLGGSRDIHVVHFHGQTLLENGTQQHQLGVWPLLPGSFKTLE 296
Query: 293 GERWDFILNATHHVGNYWIKMRGLMDCDERFTSAYQTAVLRYEGAPDESPAGEVDY 348
+ + L D +
Sbjct: 297 MKASKPGWWLLDTEVGEIQRAGMQTPFLIVDRECKMPMGLSTGLIADSQIQASEFW 352
Score = 38.2 bits (88), Expect = 0.009
Identities = 18/119 (15%), Positives = 26/119 (21%), Gaps = 26/119 (21%)
Query: 499 HPFHLHGHPFRVVAMERVAKNITRQDVIDMDAKGLIRRNLKDAPLKDTVTVPDGGFTIIR 558
H H HG + G F +
Sbjct: 263 HVVHFHGQTLLENG--------------------------TQQHQLGVWPLLPGSFKTLE 296
Query: 559 FHATNPGYWLFHCHIEFHVETGMALVFKVGEHEDMAPVPKDFPTCGDYYNVDSVEDEDN 617
A+ PG+WL + GM F + + E P+ D S
Sbjct: 297 MKASKPGWWLLDTEVGEIQRAGMQTPFLIVDRECKMPMGLSTGLIADSQIQASEFWGYW 355
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.9 bits (129), Expect = 2e-07
Identities = 47/255 (18%), Positives = 71/255 (27%), Gaps = 96/255 (37%)
Query: 44 CP-FNVTDCGRLHCIPADGVKRAITVVNRQLPGPAVDVCVGDHVIVNLHNGLMEESTSIH 102
P ++++ + V+ + N LP G V ++L NG
Sbjct: 336 SPMLSISNLTQEQ------VQDYVNKTNSHLPA-------GKQVEISLVNG--------- 373
Query: 103 WHGHHQVDSPYMD--GV----------PHLTQCPVP-----PRSTFRYKFNA-DSPGTHF 144
+ V P G+ L Q +P + F +F SP F
Sbjct: 374 -AKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLK--FSNRFLPVASP---F 427
Query: 145 WHSH-----TGSQRGDGSFGAFIIRKPRPREVHAPLYDF----DL--------PEHIMLI 187
HSH + D +++ P+YD DL + I
Sbjct: 428 -HSHLLVPASDLINKDLVKNNVSF---NAKDIQIPVYDTFDGSDLRVLSGSISERIVDCI 483
Query: 188 T----DWSHVLGVEMFNAHHHADGDNKPPTILMNGKGRFKEFRSNATVTYTPMEVFTVKQ 243
W F A H IL G G +T+ K
Sbjct: 484 IRLPVKWETTT---QFKATH----------ILDFGPGGASGL---GVLTH------RNKD 521
Query: 244 GHSYRFRIINAGYLN 258
G R+I AG L+
Sbjct: 522 GTG--VRVIVAGTLD 534
Score = 50.8 bits (121), Expect = 2e-06
Identities = 87/593 (14%), Positives = 167/593 (28%), Gaps = 228/593 (38%)
Query: 90 LHNGLMEES----TSIHWHGHHQVDSPYMDGVPHLTQCPVPPRSTFRYKFNAD----SPG 141
L +G +E T+ + Q+ + +P T+ F AD +P
Sbjct: 11 LSHGSLEHVLLVPTASFFIAS-QLQEQFNKILPEPTE-----------GFAADDEPTTPA 58
Query: 142 ---THFWHSHTGSQRGDGSFGAF--IIRKP---------RPREVHA------PLYDFDLP 181
F + S G F ++ ++HA D L
Sbjct: 59 ELVGKFL-GYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLV 117
Query: 182 EHIMLITDW---SHVLGVEMFNAHHHA------DGDNKPPTILMNGKGR----FKEFRSN 228
+ LI ++ + + A +G+ + I G+G F+E R
Sbjct: 118 KTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI-FGGQGNTDDYFEELRDL 176
Query: 229 ATVTYTPM-----------------EVFTVKQGHSYRFRII----------NAGYLN--- 258
TY + ++ + I+ + YL
Sbjct: 177 YQ-TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP 235
Query: 259 --CP-IELSIANHTLTAINSDG---GDIKPISVGS-----------IVSYAGERWD-FIL 300
CP I + H + G G+++ G+ ++ W+ F +
Sbjct: 236 ISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDS-WESFFV 294
Query: 301 NATHHVGN-YWIKMRGLMDCDERF------TSAYQTAVLRYEGAPDESPAGEVDYDATRT 353
+ + ++I +R C E + S + ++ EG P SP +
Sbjct: 295 SVRKAITVLFFIGVR----CYEAYPNTSLPPSILEDSLENNEGVP--SPMLSI------- 341
Query: 354 SGTVLNPLNTPSRQAKSTLISELSTVHSASSDVRLQDRANLTFYISYDFYEIDNP-HFHL 412
S +++ +++ ++ A V IS ++ + +
Sbjct: 342 SN--------LTQEQVQDYVNKTNSHLPAGKQV----------EISL----VNGAKNLVV 379
Query: 413 S----TLYGFDEVKRLEKVRTP----QLNHLSFRFPTFPLLSQRDQIDESTFCSNLTTDR 464
S +LYG L K + P Q R P S+R + F
Sbjct: 380 SGPPQSLYGL--NLTLRKAKAPSGLDQ-----SRIP----FSERKLKFSNRF-------- 420
Query: 465 CADSYCECTNVVNVPLESVVELIIIDEGVAYDANHPFH---LHGHPFRVVAMERVAKNIT 521
+P+ + PFH L A + + K++
Sbjct: 421 -------------LPV-AS----------------PFHSHLLVP------ASDLINKDLV 444
Query: 522 RQDVIDMDAKGLIRRNLKDAPLKDTVTVPD---GGFTIIRFHA----TNPGYW 567
+ + + +AK + P+ DT D +I P W
Sbjct: 445 KNN-VSFNAKDI------QIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKW 490
Score = 42.3 bits (99), Expect = 7e-04
Identities = 92/583 (15%), Positives = 152/583 (26%), Gaps = 219/583 (37%)
Query: 243 QGHSYRFRIINAGYLNCPIELSIANH------------TLTAINSDG--GDIKPISVGSI 288
+S R ++ G L + + A+ L ++G D +P + +
Sbjct: 2 DAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPE-PTEGFAADDEPTTPAEL 60
Query: 289 VS-YAGERWDFI--LNATHHVGNYWIKMRGLMDCDERFTSAY------QTAVLRYEGAPD 339
V + G ++ L VG + + + F + Y + D
Sbjct: 61 VGKFLG----YVSSLVEPSKVGQFDQVLNLCLTE---FENCYLEGNDIHALAAKLLQEND 113
Query: 340 ESPAGEVD-----YDATRTSGTVLNPLNTPSRQAKSTLISELSTVHSASSDVRL------ 388
+ + A + P + S S L + +L
Sbjct: 114 TTLVKTKELIKNYITARIMAKR---PFDKKSN---SALFR-----AVGEGNAQLVAIFGG 162
Query: 389 QDRANLTFYIS-----YDFYE------IDNPHFHLSTL------------YGFDEVKRLE 425
Q N Y Y Y I LS L G + ++ LE
Sbjct: 163 Q--GNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLE 220
Query: 426 K-VRTPQLNHLSFRFPTFPL--LSQ------------------RDQIDESTFCS-NLTTD 463
TP ++L + PL + Q R + +T S L T
Sbjct: 221 NPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTA 280
Query: 464 RC---ADSY------------------CEC---TNVVNVPLESVVELIIIDEGVAYDANH 499
DS+ C ++P + + + +EGV
Sbjct: 281 VAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVP----S 336
Query: 500 P-FHLHGHPFRVV------------AMERVA---KNITRQDVI-----DMDAKGLIRRNL 538
P + V A ++V N + V+ + L R
Sbjct: 337 PMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKA 396
Query: 539 KDAPLKDTVTVPDGGFT--IIRFHA-----TNPGYWLFHCH--------IEFHVETGMAL 583
K D +P F+ ++F +P FH H I + +
Sbjct: 397 KAPSGLDQSRIP---FSERKLKFSNRFLPVASP----FHSHLLVPASDLINKDLVKN-NV 448
Query: 584 VFKVGEHEDMA-PVPKDFPTCGDYYNVDSVEDEDNEIGEIGEKKEVTTQGSVAGDEIIPG 642
F +D+ PV Y+ D G I E + D II
Sbjct: 449 SFN---AKDIQIPV----------YDTFDGSDLRVLSGSISE--------RIV-DCII-- 484
Query: 643 SDDLDKKVQYEVMPTDDVRVN-TSDEHLDFTHNRNILDSRFWP 684
+P V + TH ILD F P
Sbjct: 485 -----------RLP-----VKWETTTQFKATH---ILD--FGP 506
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.8 bits (123), Expect = 8e-07
Identities = 99/659 (15%), Positives = 187/659 (28%), Gaps = 173/659 (26%)
Query: 102 HWHGHH------QVDSPYMDGVPHLTQ-------CP-VP--PRSTFRYK-----FNADSP 140
H H HH + Y D + C V P+S + +
Sbjct: 1 HHHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDA 60
Query: 141 GTH----FWHSHTGSQRGDGSFGAFIIRKPRPREVHAPLYDFDLPEHIMLITDWSHVLGV 196
+ FW T + + F+ EV Y F L++
Sbjct: 61 VSGTLRLFW---TLLSKQEEMVQKFV------EEVLRINYKF-------LMSPIKT---- 100
Query: 197 EMFNAHHHADGDNKPPTILMNGKGRFKEFRSNATVTYTPMEVFTVKQGHSYRFRIINAGY 256
+ + P+++ + E R Y +VF + + R +
Sbjct: 101 -----------EQRQPSMMTR---MYIEQRDR---LYNDNQVFA--KYNVSRLQPYLK-- 139
Query: 257 L-NCPIELSIANHTLTAINSDGGDIKPISVGSIVSYAGERWDFILNATHHVGNYWIKMRG 315
L +EL I+ G K + + + +W+ +
Sbjct: 140 LRQALLELR--PAKNVLIDGVLGSGKTWVALDVCL------SYKVQCKMDFKIFWLNL-K 190
Query: 316 LMDCDERFTSAYQTAVLR----YEGAPDESPAGEVDYDATRTSGTVLNPLNTPSRQAKST 371
+ E Q + + + D S ++ + + L L
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE---LRRLLKSKPYENCL 247
Query: 372 LISELSTVHSASS----DVRLQ------DRANLTFYISYDFYEIDNPHFHLSTLYGF--D 419
L+ L V +A + ++ + + F + I H D
Sbjct: 248 LV--LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH----SMTLTPD 301
Query: 420 EVKRL-EKVRTPQLNHLSFRFP-----TFPLL------SQRDQIDESTFCSNLTTDRCAD 467
EVK L K L+ P T P S RD + ++ D+
Sbjct: 302 EVKSLLLKY----LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357
Query: 468 SYCECTNVVNVPLE---SVVELIIIDEGVAYDANHPFHLHGHPFRVVAMERVAKNITRQD 524
NV+ P E L + A+ P L + + ++ + D
Sbjct: 358 IIESSLNVLE-PAEYRKMFDRLSVFPP----SAHIPTIL---------LSLIWFDVIKSD 403
Query: 525 VIDMDAKGLIRRNL--KDAPLKDTVTVPDGGFTIIRFHATNPGYWLFHCHIEFHVETGMA 582
V+ + K L + +L K P + T+++P + + H I H
Sbjct: 404 VMVVVNK-LHKYSLVEKQ-PKESTISIPSI---YLELKVKLENEYALHRSIVDHYN---- 454
Query: 583 LVFKVGEHEDMAPVPKDFPTCGDY------YNVDSVE--DEDNEIGE-------IGEKKE 627
+ K + +D+ P D Y +++ ++E + + +K
Sbjct: 455 -IPKTFDSDDLIPPYLD-----QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR 508
Query: 628 VTTQGSVAGDEIIPGSDDLDKKVQY--EVMPTDDVRVNTSDEHLDF--THNRNILDSRF 682
+ A I+ L Y + P + VN LDF N++ S++
Sbjct: 509 HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNA---ILDFLPKIEENLICSKY 564
>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper
protein, azurin-L thermophIle; 1.55A {Chloroflexus
aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A
Length = 140
Score = 41.1 bits (95), Expect = 2e-04
Identities = 15/90 (16%), Positives = 23/90 (25%)
Query: 498 NHPFHLHGHPFRVVAMERVAKNITRQDVIDMDAKGLIRRNLKDAPLKDTVTVPDGGFTII 557
N H + +V + + L T + G +
Sbjct: 49 NQNNLGVQHNWVLVNGGDDVAAAVNTAAQNNADALFVPPPDTPNALAWTAMLNAGESGSV 108
Query: 558 RFHATNPGYWLFHCHIEFHVETGMALVFKV 587
F PG +L+ C H GM V
Sbjct: 109 TFRTPAPGTYLYICTFPGHYLAGMKGTLTV 138
>2cal_A Rusticyanin; iron respiratory electron transport chain, blue
protein, electron transport, metal- binding,
periplasmic; 1.10A {Thiobacillus ferrooxidans} PDB:
1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A
Length = 154
Score = 39.8 bits (92), Expect = 7e-04
Identities = 17/97 (17%), Positives = 31/97 (31%), Gaps = 5/97 (5%)
Query: 73 LPGPAVDVCVGDHVIVNLHN--GLMEESTSIHWHGHHQVDSPYMDGVPHLTQC---PVPP 127
P +++ G V V N S I G P +D + T P
Sbjct: 58 KKNPTLEIPAGATVDVTFINTNKGFGHSFDITKKGPPYAVMPVIDPIVAGTGFSPVPKDG 117
Query: 128 RSTFRYKFNADSPGTHFWHSHTGSQRGDGSFGAFIIR 164
+ + + GT+++ G FG +++
Sbjct: 118 KFGYTDFTWHPTAGTYYYVCQIPGMAATGMFGKIVVK 154
Score = 29.4 bits (65), Expect = 2.3
Identities = 8/42 (19%), Positives = 10/42 (23%)
Query: 546 TVTVPDGGFTIIRFHATNPGYWLFHCHIEFHVETGMALVFKV 587
V G + + C I TGM V
Sbjct: 112 PVPKDGKFGYTDFTWHPTAGTYYYVCQIPGMAATGMFGKIVV 153
>2r7e_B Coagulation factor VIII; ceruloplasmin fold, cupper protein fold,
C2 domain fold, ACU blood coagulation, disease mutation,
glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens}
PDB: 3cdz_B*
Length = 770
Score = 40.6 bits (94), Expect = 0.002
Identities = 15/117 (12%), Positives = 29/117 (24%), Gaps = 15/117 (12%)
Query: 75 GPAVDVCVGDHVIVNLHNGLMEESTSIHWHGHHQVDSPYMDGVPHLTQCPVPPRSTFRYK 134
GP + V D+++V N S + + + V P T Y
Sbjct: 198 GPYIRAEVEDNIMVTFRN-QASRPYSFYSSLISYEED--QRQGAEPRKNFVKPNETKTYF 254
Query: 135 FNAD---SPGTH-------FWHSHTGSQRGD--GSFGAFIIRKPRPREVHAPLYDFD 179
+ +P + S ++ G G ++
Sbjct: 255 WKVQHHMAPTKDEFDCKAWAYSSDVDLEKDVHSGLIGPLLVCHTNTLNPAHGRQVTV 311
Score = 32.1 bits (72), Expect = 0.77
Identities = 12/56 (21%), Positives = 21/56 (37%)
Query: 545 DTVTVPDGGFTIIRFHATNPGYWLFHCHIEFHVETGMALVFKVGEHEDMAPVPKDF 600
+ G F + + G W C I H+ GM+ +F V ++ P+
Sbjct: 412 ALYNLYPGVFETVEMLPSKAGIWRVECLIGEHLHAGMSTLFLVYSNKCQTPLGMAS 467
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding
protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4
PDB: 1ibz_A 1ic0_A
Length = 112
Score = 36.8 bits (85), Expect = 0.004
Identities = 16/85 (18%), Positives = 20/85 (23%), Gaps = 14/85 (16%)
Query: 64 RAITVVNRQLPGPAVDVCVGDHVIVNLHNGLMEESTSIHWHGHHQVDSPYMDGVPHLTQC 123
+ I N + V GD V V + N S G Q
Sbjct: 26 KNIRAFNVLNEPETLVVKKGDAVKVVVEN------KSPISEGFSIDA--------FGVQE 71
Query: 124 PVPPRSTFRYKFNADSPGTHFWHSH 148
+ T F AD G
Sbjct: 72 VIKAGETKTISFTADKAGAFTIWCQ 96
Score = 27.9 bits (62), Expect = 4.4
Identities = 8/38 (21%), Positives = 10/38 (26%), Gaps = 1/38 (2%)
Query: 552 GGFTIIRFHATNPGYWLFHCHIEFHVETGMALVFKVGE 589
G I F A G + C + V E
Sbjct: 76 GETKTISFTADKAGAFTIWCQ-LHPKNIHLPGTLNVVE 112
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.20
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 10/32 (31%)
Query: 321 ERFTSAYQTAVLR-YEGAPDESPAGEVDYDAT 351
++ ++ L+ Y A D +PA + AT
Sbjct: 23 KKLQAS-----LKLY--ADDSAPALAI--KAT 45
>1z5x_E Ecdysone receptor ligand binding domain; ponasterone A, nuclear
receptor, ECR, USP, hormone/growth factor receptor
complex; HET: P1A; 3.07A {Bemisia tabaci}
Length = 310
Score = 32.9 bits (75), Expect = 0.30
Identities = 19/122 (15%), Positives = 36/122 (29%), Gaps = 19/122 (15%)
Query: 333 RYEGAPDESPAGEVDYDATRTSGTVLNPLNTPSRQAKSTLISELSTVHSASSDVRLQDRA 392
+G E +D D+ S + P+ + LI L + +D
Sbjct: 46 SPDGIKQEIDPQRLDTDSQLLSVNGVKPITPEQEE----LIHRLVYFQNEYEHPSPEDIK 101
Query: 393 NLTFYISYDFYEIDNPHFHLSTLYGFDEVKRLEKVRTPQLNHL-SF--RFPTFPLLSQRD 449
+ + + H++ + + + F R P F L + D
Sbjct: 102 RIVNAAPEEENVAEERFRHITEIT------------ILTVQLIVEFSKRLPGFDKLIRED 149
Query: 450 QI 451
QI
Sbjct: 150 QI 151
>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, cell adhesion; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 108
Score = 28.4 bits (63), Expect = 2.9
Identities = 7/35 (20%), Positives = 14/35 (40%)
Query: 218 GKGRFKEFRSNATVTYTPMEVFTVKQGHSYRFRII 252
G ++ T T + V + + Y FR++
Sbjct: 47 GSQGWEVLDPAVAGTETELLVPGLIKDVLYEFRLV 81
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing
protein, flavoprotein, PS protein structure initiative;
HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8
e.74.1.1
Length = 401
Score = 29.4 bits (67), Expect = 4.3
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 391 RANLT-FYISYDFYEIDNPHFHLSTLYGFD 419
N T ++ Y NPHF S L +
Sbjct: 50 FCNFTNLEVTPAHYLSQNPHFVKSALARYT 79
>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A
{Chloroflexus aurantiacus}
Length = 139
Score = 28.3 bits (62), Expect = 5.1
Identities = 11/90 (12%), Positives = 23/90 (25%), Gaps = 1/90 (1%)
Query: 498 NHPFHLHGHPFRVVAMERVAKNITRQDVIDMDAKGLIRRNLKDAPLKDTVTVPDGGFTII 557
+ + H + +V + K + ++ +
Sbjct: 50 KNNSAVQQHNWILVKGGEAEAANIANAGLSAGPAANYLPADKSNIIAESPLANGNETVEV 109
Query: 558 RFHATNPGYWLFHCHIEFHVETGMALVFKV 587
F A G +L+ C + H M V
Sbjct: 110 TFTAPAAGTYLYICTVPGH-YPLMQGKLVV 138
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 28.1 bits (62), Expect = 7.5
Identities = 6/56 (10%), Positives = 15/56 (26%), Gaps = 17/56 (30%)
Query: 446 SQRDQIDESTFC-------SNLTTD-RCADSYC-ECTNVVNVPLESVVELIIIDEG 492
+ ++ C + D C C V++ + ++D
Sbjct: 13 RRGPNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLS---DK-----LVDTR 60
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.435
Gapped
Lambda K H
0.267 0.0585 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,388,233
Number of extensions: 720290
Number of successful extensions: 1910
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1618
Number of HSP's successfully gapped: 118
Length of query: 695
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 595
Effective length of database: 3,909,693
Effective search space: 2326267335
Effective search space used: 2326267335
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.6 bits)