BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9780
(302 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YTZ|T Chain T, Crystal Structure Of Skeletal Muscle Troponin In The Ca2+-
Activated State
pdb|1YV0|T Chain T, Crystal Structure Of Skeletal Muscle Troponin In The Ca2+-
Free State
Length = 107
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Query: 93 RIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDLKELKERQKQQLRH 152
R KPLN++ + KL+ KA ELW+ + +L+T+KYD E+ KR+ Y++ L+ R Q +H
Sbjct: 33 RRKPLNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQAQKH 92
Query: 153 --KALKKG 158
KA KG
Sbjct: 93 SKKAGAKG 100
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 33/46 (71%)
Query: 257 RIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYD 302
R KPLN++ + KL+ KA ELW+ + +L+T+KYD E+ KR+ Y+
Sbjct: 33 RRKPLNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYE 78
>pdb|2W49|1 Chain 1, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|4 Chain 4, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|7 Chain 7, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|Y Chain Y, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4U|1 Chain 1, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|4 Chain 4, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|7 Chain 7, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|Y Chain Y, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
Length = 90
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 40/60 (66%)
Query: 93 RIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDLKELKERQKQQLRH 152
R KPLN++ + KL+ KA ELW+ + +L+T+KYD E+ KR+ Y++ L+ R Q +H
Sbjct: 30 RRKPLNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQAQKH 89
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 33/46 (71%)
Query: 257 RIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYD 302
R KPLN++ + KL+ KA ELW+ + +L+T+KYD E+ KR+ Y+
Sbjct: 30 RRKPLNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYE 75
>pdb|1J1D|B Chain B, Crystal Structure Of The 46kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1D|E Chain E, Crystal Structure Of The 46kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1E|B Chain B, Crystal Structure Of The 52kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1E|E Chain E, Crystal Structure Of The 52kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
Length = 106
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 36/53 (67%)
Query: 93 RIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDLKELKER 145
R K L ++ + +L+ KA ELW+TI LE +K+DL+E+ K+Q Y++ L+ R
Sbjct: 33 RRKVLAIDHLNEDQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNR 85
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 32/46 (69%)
Query: 257 RIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYD 302
R K L ++ + +L+ KA ELW+TI LE +K+DL+E+ K+Q Y+
Sbjct: 33 RRKVLAIDHLNEDQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYE 78
>pdb|1J1D|C Chain C, Crystal Structure Of The 46kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1D|F Chain F, Crystal Structure Of The 46kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
Length = 133
Score = 30.8 bits (68), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 33/57 (57%)
Query: 89 ALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDLKELKER 145
AL+ R +PL + G +LQ A +L + K++ ++YD+E + + ++ +L ++
Sbjct: 45 ALSTRAQPLELAGLGFAELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQK 101
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 253 ALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEER 295
AL+ R +PL + G +LQ A +L + K++ ++YD+E +
Sbjct: 45 ALSTRAQPLELAGLGFAELQDLARQLHARVDKVDEERYDIEAK 87
>pdb|1J1E|C Chain C, Crystal Structure Of The 52kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1E|F Chain F, Crystal Structure Of The 52kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
Length = 180
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 89 ALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLE 129
AL+ R +PL + G +LQ A +L + K++ ++YD+E
Sbjct: 45 ALSTRAQPLELAGLGFAELQDLARQLHARVDKVDEERYDIE 85
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 253 ALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLE 293
AL+ R +PL + G +LQ A +L + K++ ++YD+E
Sbjct: 45 ALSTRAQPLELAGLGFAELQDLARQLHARVDKVDEERYDIE 85
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.310 0.127 0.346
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,425,492
Number of Sequences: 62578
Number of extensions: 203057
Number of successful extensions: 599
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 584
Number of HSP's gapped (non-prelim): 20
length of query: 302
length of database: 14,973,337
effective HSP length: 98
effective length of query: 204
effective length of database: 8,840,693
effective search space: 1803501372
effective search space used: 1803501372
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (24.3 bits)