Query psy9780
Match_columns 302
No_of_seqs 327 out of 570
Neff 4.9
Searched_HMMs 46136
Date Fri Aug 16 19:24:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9780.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9780hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3634|consensus 100.0 7.4E-36 1.6E-40 282.7 14.7 176 1-178 124-307 (361)
2 KOG3634|consensus 99.9 2.8E-25 6.1E-30 211.0 13.0 162 134-302 98-266 (361)
3 PF00992 Troponin: Troponin; 99.9 7.6E-23 1.7E-27 174.0 4.3 126 65-279 6-132 (132)
4 KOG3977|consensus 99.7 8.2E-18 1.8E-22 150.3 6.3 102 65-172 49-154 (221)
5 PF00992 Troponin: Troponin; 99.5 7.3E-15 1.6E-19 125.1 5.1 72 231-302 8-79 (132)
6 KOG3977|consensus 98.8 4.9E-09 1.1E-13 94.4 4.3 71 230-300 50-122 (221)
7 KOG1144|consensus 74.3 11 0.00024 41.4 7.6 32 3-34 224-255 (1064)
8 PF10044 Ret_tiss: Retinal tis 73.0 3.1 6.7E-05 34.1 2.5 23 263-285 55-77 (95)
9 PF10044 Ret_tiss: Retinal tis 68.4 4.7 0.0001 33.1 2.6 24 98-121 54-77 (95)
10 KOG1029|consensus 62.6 71 0.0015 35.5 10.6 47 103-149 487-533 (1118)
11 KOG0163|consensus 54.3 22 0.00049 39.1 5.3 36 8-43 934-969 (1259)
12 KOG0163|consensus 40.4 2.7E+02 0.0059 31.3 10.7 22 107-128 989-1010(1259)
13 COG1340 Uncharacterized archae 37.4 2.6E+02 0.0056 27.4 9.3 58 104-161 167-225 (294)
14 PF01486 K-box: K-box region; 33.2 1.2E+02 0.0025 24.3 5.3 54 96-155 40-94 (100)
15 PF06698 DUF1192: Protein of u 29.9 69 0.0015 24.1 3.2 28 97-124 16-43 (59)
16 PF08581 Tup_N: Tup N-terminal 26.2 3.3E+02 0.0071 21.5 6.7 38 121-158 23-61 (79)
17 PF06698 DUF1192: Protein of u 25.9 86 0.0019 23.6 3.1 28 261-288 16-43 (59)
18 KOG4402|consensus 24.7 73 0.0016 27.8 2.8 24 263-286 95-118 (144)
19 PF10779 XhlA: Haemolysin XhlA 24.7 2.6E+02 0.0055 21.1 5.6 47 105-151 2-48 (71)
20 PF09726 Macoilin: Transmembra 23.7 7.5E+02 0.016 27.0 10.8 37 114-150 620-656 (697)
21 smart00540 LEM in nuclear memb 22.9 50 0.0011 23.4 1.3 17 98-114 2-18 (44)
22 KOG2072|consensus 22.7 1.7E+02 0.0038 32.7 5.8 42 2-44 783-827 (988)
23 PF08232 Striatin: Striatin fa 21.6 2.1E+02 0.0045 24.5 5.1 50 113-162 29-79 (134)
24 KOG4402|consensus 21.5 95 0.0021 27.1 2.9 24 98-121 94-117 (144)
No 1
>KOG3634|consensus
Probab=100.00 E-value=7.4e-36 Score=282.73 Aligned_cols=176 Identities=47% Similarity=0.653 Sum_probs=154.1
Q ss_pred ChhhhhHHHHHHhhHHHHHhhhHHH--HHHHhhHHHHHHHHHHHHHhhhhhhcCCCCCcccccCCCc----chhhHHHHh
Q psy9780 1 MAQRKKEEEERRQREVEEKKQRDLE--EKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPG----LTLSTAQLE 74 (302)
Q Consensus 1 ~~er~~~eeeRr~~EeEErrq~~~~--E~r~r~EEee~Kk~~~~~a~k~~~~~~~g~nf~i~k~~~g----~~L~kA~~~ 74 (302)
|++++++.++|++.++++++.+..- +.+.|++|+..+|++||.+.+.. ..+|.||+|.+++.+ |+++.|+++
T Consensus 124 ~~~rkr~~e~RR~~~aeerk~r~~k~de~r~r~~Eek~Rr~~m~~~~~~~--~~~gknftvakk~a~~~~fgn~~qak~e 201 (361)
T KOG3634|consen 124 LAERKRRIEERRREEAEERKIREAKEDERRIRLEEEKSRRQEMMAGRFAE--DDAGKNFTVAKKGAQNDGFGNIVQAKQE 201 (361)
T ss_pred HHHHHhhHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCc--ccccCcceeecccccchhHHHHHHHHHH
Confidence 5789999999999999999944333 33778888889999999998765 568999999999643 677777889
Q ss_pred hhhhHHHHHHHH-HHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHhhhhhhccHHHHHhhhhhhHHHHHHHHHHHHhhh
Q psy9780 75 RNKTKEQIEEEK-KIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDLKELKERQKQQLRHK 153 (302)
Q Consensus 75 ~~~~keq~~eeK-kk~LaeR~kpL~id~l~~~~LrekakELh~~I~~LE~EKyDle~k~~rq~yeI~eL~~Rv~dl~kfk 153 (302)
++++|+|++.+| ..+|+.|.+|||||+|++++|+++|++||+|||+||++||||+.++++|+|||++||+|++|.+++.
T Consensus 202 ~~mtKeQqEdakk~~l~aiRkk~~~~~~~~e~~LkeKiKELhqrI~kLE~EKyDLekR~eRQeYDlkeL~eRqrq~~r~~ 281 (361)
T KOG3634|consen 202 MGMTKEQQEDAKKKFLLAIRKKPLNISELPENDLKEKIKELHQRICKLETEKYDLEKRHERQEYDLKELNERQRQVQRNS 281 (361)
T ss_pred hcccHHHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhccHHHHHHHHHHHHHHH
Confidence 999999999665 5555788899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCchhh-cCCCCchHHHHHHH
Q psy9780 154 ALKKGLDPEAL-TGKYPVKEEERRQR 178 (302)
Q Consensus 154 ~~~~g~dp~~~-~~~~p~k~~er~~r 178 (302)
++++||||... ++-|||+++..|.-
T Consensus 282 ~~k~g~d~~~v~g~~~p~k~~~~sk~ 307 (361)
T KOG3634|consen 282 ALKKGLDPEEVTGRWKPPKVQISSKY 307 (361)
T ss_pred HhhcCCChhhhcCCCCCceeehhhhh
Confidence 99999999866 77789999887753
No 2
>KOG3634|consensus
Probab=99.92 E-value=2.8e-25 Score=210.99 Aligned_cols=162 Identities=41% Similarity=0.597 Sum_probs=127.9
Q ss_pred hhhhhHHHHHHHHHHHHhhhhhhcCCCchhhcCCCCchHHHHHHHHHHHHhhhHH--HHHHHchHHHHHHHHHHHHHhhh
Q psy9780 134 RQDYDLKELKERQKQQLRHKALKKGLDPEALTGKYPVKEEERRQREVEEKKQRDL--EEKRQRLEEAEKKRQAMMAALKE 211 (302)
Q Consensus 134 rq~yeI~eL~~Rv~dl~kfk~~~~g~dp~~~~~~~p~k~~er~~re~ee~rq~~~--~e~r~r~EEe~~kk~a~~~a~k~ 211 (302)
+..-+++.|...+....--+. -++ ..+..+.--+.+|+..++++.+.+.. .+.+.|++|+..+|++||++.+.
T Consensus 98 r~E~eL~eLkekq~~r~~eR~----~eE-~e~~~rkr~~e~RR~~~aeerk~r~~k~de~r~r~~Eek~Rr~~m~~~~~~ 172 (361)
T KOG3634|consen 98 REEKELKELKEKQEKRKLERE----EEE-EELAERKRRIEERRREEAEERKIREAKEDERRIRLEEEKSRRQEMMAGRFA 172 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHhh----hcH-HHHHHHHhhHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcC
Confidence 445678888887765432222 122 23444555677888888888874443 34588899999999999987765
Q ss_pred hhhcCCCCCcccccCCcc----cchhHHHHHhhhcHHHHHHH-HHhhhhhccCCCCCCCCChHHHHHHHHHHHHHHHhhh
Q psy9780 212 QTNKSKGPNFTIQRREPG----LTLSTAQLERNKTKEQIEEE-KKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLE 286 (302)
Q Consensus 212 ~~~~~~g~nf~~~kk~~~----~~L~ka~~~~~~~k~q~~ee-Kkk~LaeR~kpL~id~l~~d~LrekakELh~~i~~LE 286 (302)
. ...|.||+|++++.+ +++++|.++++++|+|++.+ |..+|+.|.+|||||+|++++|+++|++||+|||+||
T Consensus 173 ~--~~~gknftvakk~a~~~~fgn~~qak~e~~mtKeQqEdakk~~l~aiRkk~~~~~~~~e~~LkeKiKELhqrI~kLE 250 (361)
T KOG3634|consen 173 E--DDAGKNFTVAKKGAQNDGFGNIVQAKQEMGMTKEQQEDAKKKFLLAIRKKPLNISELPENDLKEKIKELHQRICKLE 250 (361)
T ss_pred c--ccccCcceeecccccchhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHHHHH
Confidence 4 567999999999753 36777888999999999955 5556689999999999999999999999999999999
Q ss_pred hhhchHHHHhhhccCC
Q psy9780 287 TDKYDLEERQKRQDYD 302 (302)
Q Consensus 287 ~EKyDle~k~~rq~Ye 302 (302)
++||||+.++++|+||
T Consensus 251 ~EKyDLekR~eRQeYD 266 (361)
T KOG3634|consen 251 TEKYDLEKRHERQEYD 266 (361)
T ss_pred HhhhhHHHHHHhhhcc
Confidence 9999999999999998
No 3
>PF00992 Troponin: Troponin; InterPro: IPR001978 The troponin (Tn) complex regulates Ca2+ induced muscle contraction. Tn contains three subunits, Ca2+ binding (TnC), inhibitory (TnI), and tropomyosin binding (TnT). This family includes troponin T and troponin I. Troponin I binds to actin and troponin T binds to tropomyosin [, , ].; PDB: 1J1D_C 1MXL_I 1LXF_I 2KRD_I 1J1E_F 2L1R_B 2KGB_I 1YTZ_I 1YV0_I 1VDJ_A ....
Probab=99.87 E-value=7.6e-23 Score=173.95 Aligned_cols=126 Identities=37% Similarity=0.476 Sum_probs=111.0
Q ss_pred cchhhHHHHhhhhhHHHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHhhhhhhccHHHHHhhhhhhHHHHHH
Q psy9780 65 GLTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDLKELKE 144 (302)
Q Consensus 65 g~~L~kA~~~~~~~keq~~eeKkk~LaeR~kpL~id~l~~~~LrekakELh~~I~~LE~EKyDle~k~~rq~yeI~eL~~ 144 (302)
.+++.+|..++..+.++.++++.+||++||||++|+|+|.++|+++|++||++|+.|++++||++.+|.+++|||++|+.
T Consensus 6 ~L~~~kA~~el~~e~~~keeek~~~L~eri~~l~~~g~~~~eL~~~~k~lh~ri~~leeEryd~E~kv~k~~~Ei~elk~ 85 (132)
T PF00992_consen 6 DLLLLKAKIELHFEQRKKEEEKRRYLAERIPPLKLDGLSRAELQELCKELHERIDKLEEERYDLEEKVAKQDYEIEELKK 85 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHCCCTSS--GTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHh
Confidence 46788999999988898999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh-hhhhhcCCCchhhcCCCCchHHHHHHHHHHHHhhhHHHHHHHchHHHHHHHHHHHHHhhhhhhcCCCCCccc
Q psy9780 145 RQKQQLR-HKALKKGLDPEALTGKYPVKEEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTI 223 (302)
Q Consensus 145 Rv~dl~k-fk~~~~g~dp~~~~~~~p~k~~er~~re~ee~rq~~~~e~r~r~EEe~~kk~a~~~a~k~~~~~~~g~nf~~ 223 (302)
+|+|+++ |++ |+
T Consensus 86 kv~d~rgkfkk------p~------------------------------------------------------------- 98 (132)
T PF00992_consen 86 KVNDLRGKFKK------PT------------------------------------------------------------- 98 (132)
T ss_dssp CCCCCCCSHCC------HH-------------------------------------------------------------
T ss_pred HHHHHcccccc------hH-------------------------------------------------------------
Confidence 9966654 555 31
Q ss_pred ccCCcccchhHHHHHhhhcHHHHHHHHHhhhhhccCCCCCCCCChHHHHHHHHHHH
Q psy9780 224 QRREPGLTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELW 279 (302)
Q Consensus 224 ~kk~~~~~L~ka~~~~~~~k~q~~eeKkk~LaeR~kpL~id~l~~d~LrekakELh 279 (302)
....++.+++.+..||+++|++.++|++.++++|
T Consensus 99 ----------------------lkkvkk~~~~~~~~~l~~k~~~~~~lr~~lK~vk 132 (132)
T PF00992_consen 99 ----------------------LKKVKKSADAMRRKLLGIKHKVSMDLRANLKEVK 132 (132)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHH
T ss_pred ----------------------HHHHHHHHHHHHHhhhCcccccHHHHHHHhhccC
Confidence 1235667788899999999999999999999998
No 4
>KOG3977|consensus
Probab=99.71 E-value=8.2e-18 Score=150.29 Aligned_cols=102 Identities=24% Similarity=0.291 Sum_probs=89.9
Q ss_pred cchhhHHHHhhhhhHHHHHHHHHHHhhhccCCC-CCCCCCHH-HHHHHHHHHHHHHHhhhhhhccHHHHHhhhhhhHHHH
Q psy9780 65 GLTLSTAQLERNKTKEQIEEEKKIALNIRIKPL-NVEGWSIH-KLQAKATELWETIVKLETDKYDLEERQKRQDYDLKEL 142 (302)
Q Consensus 65 g~~L~kA~~~~~~~keq~~eeKkk~LaeR~kpL-~id~l~~~-~LrekakELh~~I~~LE~EKyDle~k~~rq~yeI~eL 142 (302)
.++|++|...+..+....+.+|.+||++|..|| |+++|+.. .|+++|.+||.+|+.||+|+||++.+|.....+|++|
T Consensus 49 kLlm~kAaedLkqqq~~kEqErqr~LaeR~i~lp~~d~l~d~g~Lq~ly~~l~arv~~leEEkYDi~~~v~qt~~EIndL 128 (221)
T KOG3977|consen 49 KLLMQKAAEDLKQQQELKEQERQRYLAERTIPLPDVDSLDDRGLLQDLYRELHARVDALEEEKYDIEAKVTQTETEINDL 128 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCcccchHHHHHHHHHHHHHHHHHHHhhcchhheeehhhhhHHHH
Confidence 489999998888766667799999999998775 88877754 4899999999999999999999999999999999999
Q ss_pred HHHHHHHHh-hhhhhcCCCch-hhcCCCCchH
Q psy9780 143 KERQKQQLR-HKALKKGLDPE-ALTGKYPVKE 172 (302)
Q Consensus 143 ~~Rv~dl~k-fk~~~~g~dp~-~~~~~~p~k~ 172 (302)
++.||||+| |++ |+ ..+|+|..+.
T Consensus 129 tikvnDLRGKFvk------PtLkkVsks~~kf 154 (221)
T KOG3977|consen 129 TIKVNDLRGKFVK------PTLKKVSKSADKF 154 (221)
T ss_pred HHHHHHhcccccC------ccHHHHHhhhHHH
Confidence 999999996 999 77 6688776665
No 5
>PF00992 Troponin: Troponin; InterPro: IPR001978 The troponin (Tn) complex regulates Ca2+ induced muscle contraction. Tn contains three subunits, Ca2+ binding (TnC), inhibitory (TnI), and tropomyosin binding (TnT). This family includes troponin T and troponin I. Troponin I binds to actin and troponin T binds to tropomyosin [, , ].; PDB: 1J1D_C 1MXL_I 1LXF_I 2KRD_I 1J1E_F 2L1R_B 2KGB_I 1YTZ_I 1YV0_I 1VDJ_A ....
Probab=99.53 E-value=7.3e-15 Score=125.15 Aligned_cols=72 Identities=43% Similarity=0.601 Sum_probs=66.3
Q ss_pred chhHHHHHhhhcHHHHHHHHHhhhhhccCCCCCCCCChHHHHHHHHHHHHHHHhhhhhhchHHHHhhhccCC
Q psy9780 231 TLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYD 302 (302)
Q Consensus 231 ~L~ka~~~~~~~k~q~~eeKkk~LaeR~kpL~id~l~~d~LrekakELh~~i~~LE~EKyDle~k~~rq~Ye 302 (302)
++.+|..++..+.++.++++.+||++||||++|+|++.++|+++|++||++|+.|++++||+++++.+++||
T Consensus 8 ~~~kA~~el~~e~~~keeek~~~L~eri~~l~~~g~~~~eL~~~~k~lh~ri~~leeEryd~E~kv~k~~~E 79 (132)
T PF00992_consen 8 LLLKAKIELHFEQRKKEEEKRRYLAERIPPLKLDGLSRAELQELCKELHERIDKLEEERYDLEEKVAKQDYE 79 (132)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHCCCTSS--GTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 678888888888888889999999999999999999999999999999999999999999999999999985
No 6
>KOG3977|consensus
Probab=98.78 E-value=4.9e-09 Score=94.40 Aligned_cols=71 Identities=28% Similarity=0.376 Sum_probs=56.9
Q ss_pred cchhHHHHHhhhcHHHHHHHHHhhhhhccCCC-CCCCCCh-HHHHHHHHHHHHHHHhhhhhhchHHHHhhhcc
Q psy9780 230 LTLSTAQLERNKTKEQIEEEKKIALNIRIKPL-NVEGWSI-HKLQAKATELWETIVKLETDKYDLEERQKRQD 300 (302)
Q Consensus 230 ~~L~ka~~~~~~~k~q~~eeKkk~LaeR~kpL-~id~l~~-d~LrekakELh~~i~~LE~EKyDle~k~~rq~ 300 (302)
.+|++|.+.+...-...+.+|.+||++|.-|| |+++++. ..|+++|.+||.+|+.||+|+||++.+|....
T Consensus 50 Llm~kAaedLkqqq~~kEqErqr~LaeR~i~lp~~d~l~d~g~Lq~ly~~l~arv~~leEEkYDi~~~v~qt~ 122 (221)
T KOG3977|consen 50 LLMQKAAEDLKQQQELKEQERQRYLAERTIPLPDVDSLDDRGLLQDLYRELHARVDALEEEKYDIEAKVTQTE 122 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCcccchHHHHHHHHHHHHHHHHHHHhhcchhheeehhh
Confidence 47889988887644445688999999996664 5655543 33899999999999999999999999887643
No 7
>KOG1144|consensus
Probab=74.27 E-value=11 Score=41.39 Aligned_cols=32 Identities=50% Similarity=0.758 Sum_probs=21.4
Q ss_pred hhhhHHHHHHhhHHHHHhhhHHHHHHHhhHHH
Q psy9780 3 QRKKEEEERRQREVEEKKQRDLEEKRQRLEEA 34 (302)
Q Consensus 3 er~~~eeeRr~~EeEErrq~~~~E~r~r~EEe 34 (302)
.++++++||+.+++||+-.+.++|++++.|++
T Consensus 224 a~~qe~eE~qkreeEE~~r~eeEEer~~ee~E 255 (1064)
T KOG1144|consen 224 AKRQEEEERQKREEEERLRREEEEERRREEEE 255 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777666666666665544
No 8
>PF10044 Ret_tiss: Retinal tissue protein; InterPro: IPR018737 Rtp is a family of proteins of approximately 112 amino acids in length which is conserved from nematodes to humans. The proposed tertiary structure is of almost entirely alpha helix interrupted only by loops located at proline residues. Three sites in the protein sequence reveal two types of possible post-translation modification. A serine residue, at position 41, is a candidate for protein kinase C phosphorylation. Glycine residues at position 69 and 91 are probable sites for acetylation by covalent amide linkage of myristate via N-myristoyl transferase. Rtp is differentially expressed in the trout retina between parr and smolt developmental stages (smoltification). It is likely to be a house-keeping protein [].
Probab=73.00 E-value=3.1 Score=34.11 Aligned_cols=23 Identities=17% Similarity=0.231 Sum_probs=21.7
Q ss_pred CCCCChHHHHHHHHHHHHHHHhh
Q psy9780 263 VEGWSIHKLQAKATELWETIVKL 285 (302)
Q Consensus 263 id~l~~d~LrekakELh~~i~~L 285 (302)
++.|+.++|-++++.||+++|+|
T Consensus 55 Ls~Lt~~~L~~~Ik~L~~~aYqL 77 (95)
T PF10044_consen 55 LSSLTPDQLIEKIKKLQDEAYQL 77 (95)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHH
Confidence 58899999999999999999987
No 9
>PF10044 Ret_tiss: Retinal tissue protein; InterPro: IPR018737 Rtp is a family of proteins of approximately 112 amino acids in length which is conserved from nematodes to humans. The proposed tertiary structure is of almost entirely alpha helix interrupted only by loops located at proline residues. Three sites in the protein sequence reveal two types of possible post-translation modification. A serine residue, at position 41, is a candidate for protein kinase C phosphorylation. Glycine residues at position 69 and 91 are probable sites for acetylation by covalent amide linkage of myristate via N-myristoyl transferase. Rtp is differentially expressed in the trout retina between parr and smolt developmental stages (smoltification). It is likely to be a house-keeping protein [].
Probab=68.39 E-value=4.7 Score=33.09 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=21.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhh
Q psy9780 98 NVEGWSIHKLQAKATELWETIVKL 121 (302)
Q Consensus 98 ~id~l~~~~LrekakELh~~I~~L 121 (302)
.+++|+.++|-++++.||+++++|
T Consensus 54 eLs~Lt~~~L~~~Ik~L~~~aYqL 77 (95)
T PF10044_consen 54 ELSSLTPDQLIEKIKKLQDEAYQL 77 (95)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHH
Confidence 478899999999999999999876
No 10
>KOG1029|consensus
Probab=62.64 E-value=71 Score=35.48 Aligned_cols=47 Identities=32% Similarity=0.449 Sum_probs=28.4
Q ss_pred CHHHHHHHHHHHHHHHHhhhhhhccHHHHHhhhhhhHHHHHHHHHHH
Q psy9780 103 SIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDLKELKERQKQQ 149 (302)
Q Consensus 103 ~~~~LrekakELh~~I~~LE~EKyDle~k~~rq~yeI~eL~~Rv~dl 149 (302)
..+.|+..++|+.+.+-+|--|+-.|+.+++....-...-+.|+..|
T Consensus 487 ei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L 533 (1118)
T KOG1029|consen 487 EIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSEL 533 (1118)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHH
Confidence 34556677777777777777777666666665544444444444444
No 11
>KOG0163|consensus
Probab=54.31 E-value=22 Score=39.14 Aligned_cols=36 Identities=47% Similarity=0.649 Sum_probs=20.0
Q ss_pred HHHHHhhHHHHHhhhHHHHHHHhhHHHHHHHHHHHH
Q psy9780 8 EEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMA 43 (302)
Q Consensus 8 eeeRr~~EeEErrq~~~~E~r~r~EEee~Kk~~~~~ 43 (302)
|-||-++|+||+++++++|+++.+-|-+.||+++.+
T Consensus 934 E~ER~rrEaeek~rre~ee~k~~k~e~e~kRK~eEe 969 (1259)
T KOG0163|consen 934 EAERKRREAEEKRRREEEEKKRAKAEMETKRKAEEE 969 (1259)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666655554455555554433
No 12
>KOG0163|consensus
Probab=40.38 E-value=2.7e+02 Score=31.26 Aligned_cols=22 Identities=27% Similarity=0.252 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHhhhhhhccH
Q psy9780 107 LQAKATELWETIVKLETDKYDL 128 (302)
Q Consensus 107 LrekakELh~~I~~LE~EKyDl 128 (302)
|-.-+.+--.+-.++|-|+-|-
T Consensus 989 la~e~eee~k~q~~~Eqer~D~ 1010 (1259)
T KOG0163|consen 989 LAKEAEEEAKRQNQLEQERRDH 1010 (1259)
T ss_pred HHHHHHHHHHHHhHHHHHHHHH
Confidence 3333333334444455555443
No 13
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=37.41 E-value=2.6e+02 Score=27.43 Aligned_cols=58 Identities=24% Similarity=0.325 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccHHHHHhhhhhhHHHHHHHHHHHH-hhhhhhcCCCc
Q psy9780 104 IHKLQAKATELWETIVKLETDKYDLEERQKRQDYDLKELKERQKQQL-RHKALKKGLDP 161 (302)
Q Consensus 104 ~~~LrekakELh~~I~~LE~EKyDle~k~~rq~yeI~eL~~Rv~dl~-kfk~~~~g~dp 161 (302)
.++|+..+.+||..|..|-.+==-+-..+...--++.+++-+++.+- .|..+..-.|+
T Consensus 167 i~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e 225 (294)
T COG1340 167 IDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDE 225 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 46789999999999998877766666667776667777777777774 46665555444
No 14
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=33.15 E-value=1.2e+02 Score=24.25 Aligned_cols=54 Identities=20% Similarity=0.304 Sum_probs=41.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhhhhhhccHHHHHhhhhhhHHHHHHHHHHHHh-hhhh
Q psy9780 96 PLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDLKELKERQKQQLR-HKAL 155 (302)
Q Consensus 96 pL~id~l~~~~LrekakELh~~I~~LE~EKyDle~k~~rq~yeI~eL~~Rv~dl~k-fk~~ 155 (302)
.-|+++||.++|..+=+.|..+|..|=+-|..+ -..+|..|..++..+.. ...|
T Consensus 40 GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~------l~~~i~~l~~ke~~l~~en~~L 94 (100)
T PF01486_consen 40 GEDLESLSLKELQQLEQQLESALKRVRSRKDQL------LMEQIEELKKKERELEEENNQL 94 (100)
T ss_pred cccccccchHHHHHHHHhhhhhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 348999999999999999999999998777653 23557888888887763 4443
No 15
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=29.93 E-value=69 Score=24.12 Aligned_cols=28 Identities=21% Similarity=0.274 Sum_probs=23.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhhhhh
Q psy9780 97 LNVEGWSIHKLQAKATELWETIVKLETD 124 (302)
Q Consensus 97 L~id~l~~~~LrekakELh~~I~~LE~E 124 (302)
-|++.||.++|.+.+--|-.-|..++.+
T Consensus 16 ~dLs~lSv~EL~~RIa~L~aEI~R~~~~ 43 (59)
T PF06698_consen 16 EDLSLLSVEELEERIALLEAEIARLEAA 43 (59)
T ss_pred CCchhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999888888888777664
No 16
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=26.25 E-value=3.3e+02 Score=21.50 Aligned_cols=38 Identities=13% Similarity=0.300 Sum_probs=31.8
Q ss_pred hhhhhccHHHHHhhhhhhHHHHHHHHHHHH-hhhhhhcC
Q psy9780 121 LETDKYDLEERQKRQDYDLKELKERQKQQL-RHKALKKG 158 (302)
Q Consensus 121 LE~EKyDle~k~~rq~yeI~eL~~Rv~dl~-kfk~~~~g 158 (302)
+...+=|++.++..|--||..+++.|.+|- .+.++|..
T Consensus 23 ~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~ 61 (79)
T PF08581_consen 23 YKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQ 61 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555777888899999999999999999996 58886655
No 17
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=25.89 E-value=86 Score=23.61 Aligned_cols=28 Identities=21% Similarity=0.274 Sum_probs=23.7
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHhhhhh
Q psy9780 261 LNVEGWSIHKLQAKATELWETIVKLETD 288 (302)
Q Consensus 261 L~id~l~~d~LrekakELh~~i~~LE~E 288 (302)
-|+|.||.++|.+.+--|-.=|..++++
T Consensus 16 ~dLs~lSv~EL~~RIa~L~aEI~R~~~~ 43 (59)
T PF06698_consen 16 EDLSLLSVEELEERIALLEAEIARLEAA 43 (59)
T ss_pred CCchhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 3789999999999888888888887765
No 18
>KOG4402|consensus
Probab=24.68 E-value=73 Score=27.84 Aligned_cols=24 Identities=13% Similarity=0.225 Sum_probs=21.8
Q ss_pred CCCCChHHHHHHHHHHHHHHHhhh
Q psy9780 263 VEGWSIHKLQAKATELWETIVKLE 286 (302)
Q Consensus 263 id~l~~d~LrekakELh~~i~~LE 286 (302)
++||..++|.++++-+|+-||+|=
T Consensus 95 l~~lp~~dl~~kIr~iqn~vYqLG 118 (144)
T KOG4402|consen 95 LSHLPADDLAKKIRNIQNSVYQLG 118 (144)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHh
Confidence 588999999999999999999973
No 19
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=24.68 E-value=2.6e+02 Score=21.11 Aligned_cols=47 Identities=17% Similarity=0.255 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccHHHHHhhhhhhHHHHHHHHHHHHh
Q psy9780 105 HKLQAKATELWETIVKLETDKYDLEERQKRQDYDLKELKERQKQQLR 151 (302)
Q Consensus 105 ~~LrekakELh~~I~~LE~EKyDle~k~~rq~yeI~eL~~Rv~dl~k 151 (302)
.++++....+..++..++..-=.++.....++.+|..++.++..+..
T Consensus 2 ~~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~ 48 (71)
T PF10779_consen 2 QDIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKS 48 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778888888888888887778888999999999999999988763
No 20
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=23.71 E-value=7.5e+02 Score=27.02 Aligned_cols=37 Identities=19% Similarity=0.295 Sum_probs=26.1
Q ss_pred HHHHHHhhhhhhccHHHHHhhhhhhHHHHHHHHHHHH
Q psy9780 114 LWETIVKLETDKYDLEERQKRQDYDLKELKERQKQQL 150 (302)
Q Consensus 114 Lh~~I~~LE~EKyDle~k~~rq~yeI~eL~~Rv~dl~ 150 (302)
||..|...--+-=.++-.+..++.||.+|+.+|.++-
T Consensus 620 LfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~ 656 (697)
T PF09726_consen 620 LFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLL 656 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444433333333467788999999999999999975
No 21
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=22.91 E-value=50 Score=23.40 Aligned_cols=17 Identities=24% Similarity=0.298 Sum_probs=14.2
Q ss_pred CCCCCCHHHHHHHHHHH
Q psy9780 98 NVEGWSIHKLQAKATEL 114 (302)
Q Consensus 98 ~id~l~~~~LrekakEL 114 (302)
||+.||.++|+..|..+
T Consensus 2 d~~~LSd~eL~~~L~~~ 18 (44)
T smart00540 2 DVDRLSDAELRAELKQY 18 (44)
T ss_pred chhHcCHHHHHHHHHHc
Confidence 67889999999988764
No 22
>KOG2072|consensus
Probab=22.66 E-value=1.7e+02 Score=32.66 Aligned_cols=42 Identities=40% Similarity=0.597 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHhhHHHHHhh---hHHHHHHHhhHHHHHHHHHHHHH
Q psy9780 2 AQRKKEEEERRQREVEEKKQ---RDLEEKRQRLEEAEKKRQAMMAA 44 (302)
Q Consensus 2 ~er~~~eeeRr~~EeEErrq---~~~~E~r~r~EEee~Kk~~~~~a 44 (302)
|+| ..-.||.+...+++++ ++.+|++.|++|+++-+.....+
T Consensus 783 aer-~rl~erk~~R~eerk~~~~re~EEEr~Rr~EEe~~ae~~ee~ 827 (988)
T KOG2072|consen 783 AER-NRLAERKRARIEERKQAYYREIEEERARREEEEANAERQEEA 827 (988)
T ss_pred HHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 23
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=21.63 E-value=2.1e+02 Score=24.46 Aligned_cols=50 Identities=30% Similarity=0.284 Sum_probs=26.8
Q ss_pred HHHHHHHhhhhhhccHHHHHhhhhhhHHHHHHHHHHHH-hhhhhhcCCCch
Q psy9780 113 ELWETIVKLETDKYDLEERQKRQDYDLKELKERQKQQL-RHKALKKGLDPE 162 (302)
Q Consensus 113 ELh~~I~~LE~EKyDle~k~~rq~yeI~eL~~Rv~dl~-kfk~~~~g~dp~ 162 (302)
||-.+|..||+|+=.++.-.+....-|+-|-.-+.+.+ ++..++.|-++.
T Consensus 29 EmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~~~~~~~~~ 79 (134)
T PF08232_consen 29 EMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKKLKYGTDLN 79 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Confidence 55566677777665444444444444444444444444 366666675553
No 24
>KOG4402|consensus
Probab=21.47 E-value=95 Score=27.15 Aligned_cols=24 Identities=13% Similarity=0.249 Sum_probs=20.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhh
Q psy9780 98 NVEGWSIHKLQAKATELWETIVKL 121 (302)
Q Consensus 98 ~id~l~~~~LrekakELh~~I~~L 121 (302)
.++||..++|-++++-||+-|++|
T Consensus 94 el~~lp~~dl~~kIr~iqn~vYqL 117 (144)
T KOG4402|consen 94 ELSHLPADDLAKKIRNIQNSVYQL 117 (144)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHH
Confidence 367889999999999999999776
Done!