Query psy9780
Match_columns 302
No_of_seqs 327 out of 570
Neff 4.9
Searched_HMMs 29240
Date Fri Aug 16 19:24:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9780.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9780hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ytz_T Troponin T; muscle, THI 100.0 2.3E-30 7.8E-35 211.8 7.8 93 53-154 1-94 (107)
2 1j1d_B Troponin T, TNT; THIN f 100.0 5.6E-30 1.9E-34 209.2 2.8 91 64-154 2-94 (106)
3 1j1d_C Troponin I, TNI; THIN f 99.9 3.2E-28 1.1E-32 205.7 9.1 90 65-154 21-111 (133)
4 1j1e_C Troponin I, TNI; THIN f 99.9 2.6E-27 8.9E-32 208.7 8.4 100 65-170 21-122 (180)
5 1ytz_I Troponin I; muscle, THI 99.9 2E-26 7E-31 203.2 5.3 99 65-170 19-119 (182)
6 1ytz_T Troponin T; muscle, THI 99.9 1.2E-24 3.9E-29 178.1 5.7 77 217-302 1-78 (107)
7 1j1d_B Troponin T, TNT; THIN f 99.9 7.4E-24 2.5E-28 173.0 0.6 72 231-302 5-78 (106)
8 1j1d_C Troponin I, TNI; THIN f 99.8 1.9E-21 6.5E-26 164.4 6.3 73 230-302 22-94 (133)
9 1j1e_C Troponin I, TNI; THIN f 99.8 1.9E-20 6.6E-25 165.0 5.5 73 230-302 22-94 (180)
10 1ytz_I Troponin I; muscle, THI 99.8 1.7E-19 5.7E-24 159.2 6.2 71 231-302 21-91 (182)
11 1a2x_B Troponin I; muscle cont 88.9 0.088 3E-06 36.9 0.3 29 65-93 19-47 (47)
12 1a2x_B Troponin I; muscle cont 75.8 0.76 2.6E-05 32.1 0.7 28 230-257 20-47 (47)
13 3hnw_A Uncharacterized protein 60.0 6.6 0.00022 32.7 3.4 105 41-150 3-116 (138)
14 3obv_E Protein diaphanous homo 29.6 3.9E+02 0.013 25.8 12.0 63 99-161 278-357 (457)
15 3efg_A Protein SLYX homolog; x 27.3 1.3E+02 0.0043 22.5 5.5 56 101-156 6-62 (78)
16 1l8d_A DNA double-strand break 23.0 1.4E+02 0.0049 22.7 5.4 58 92-150 48-105 (112)
17 2xdj_A Uncharacterized protein 20.9 1.3E+02 0.0045 22.8 4.6 40 111-150 22-61 (83)
No 1
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=99.96 E-value=2.3e-30 Score=211.83 Aligned_cols=93 Identities=37% Similarity=0.601 Sum_probs=83.0
Q ss_pred CCCCcccccCCCcchhhHHHHhhhhhHHHHH-HHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHhhhhhhccHHHH
Q psy9780 53 KGPNFTIQRREPGLTLSTAQLERNKTKEQIE-EEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEER 131 (302)
Q Consensus 53 ~g~nf~i~k~~~g~~L~kA~~~~~~~keq~~-eeKkk~LaeR~kpL~id~l~~~~LrekakELh~~I~~LE~EKyDle~k 131 (302)
||.|| ||||++++. ..+++|++ ++|++||++|||||||||||+++|+++|++||+||++||+++|||+.+
T Consensus 1 m~~~~-------g~~~~k~e~--~~~k~q~e~EeKkkiLaER~~pL~id~l~~~~L~e~~keLh~~I~~lEeEKYDlE~k 71 (107)
T 1ytz_T 1 MGASY-------SSYLAKADQ--KRGKKQTARETKKKVLAERRKPLNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAEQ 71 (107)
T ss_dssp ---CC-------TTHHHHHHH--HHHHHHHHHHHHHHHHHHTCCCCCCSSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcch-------hhHHHHHHh--cccHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 56788 899987754 45688888 479999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhHHHHHHHHHHHHhhhh
Q psy9780 132 QKRQDYDLKELKERQKQQLRHKA 154 (302)
Q Consensus 132 ~~rq~yeI~eL~~Rv~dl~kfk~ 154 (302)
|++|+|||++|++||+||.+|++
T Consensus 72 v~kq~yEI~eL~~rV~dlgKfkK 94 (107)
T 1ytz_T 72 IKRKKYEIVTLRNRIDQAQKHSK 94 (107)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCC-
T ss_pred HHhhhhHHHHHHHHHHHhcCccC
Confidence 99999999999999999966988
No 2
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=99.95 E-value=5.6e-30 Score=209.17 Aligned_cols=91 Identities=37% Similarity=0.540 Sum_probs=68.2
Q ss_pred CcchhhH-HHHhhhhhHHHHH-HHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHhhhhhhccHHHHHhhhhhhHHH
Q psy9780 64 PGLTLST-AQLERNKTKEQIE-EEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDLKE 141 (302)
Q Consensus 64 ~g~~L~k-A~~~~~~~keq~~-eeKkk~LaeR~kpL~id~l~~~~LrekakELh~~I~~LE~EKyDle~k~~rq~yeI~e 141 (302)
+||||++ |+.++..+++|++ ++|++||++|||||||||||+++|+++|++||+||++||+++|||+.+|++|+|||++
T Consensus 2 ~~g~l~~~~~~e~~~~k~q~ereeKkkiLaER~kpL~id~l~~~~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~e 81 (106)
T 1j1d_B 2 FGGYIQKQAQTERKSGKRQTEREKKKKILAERRKVLAIDHLNEDQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINV 81 (106)
T ss_dssp ------------------CCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhHHHhcccHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHH
Confidence 4899988 3345566789987 8999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhh
Q psy9780 142 LKERQKQQLRHKA 154 (302)
Q Consensus 142 L~~Rv~dl~kfk~ 154 (302)
|++||+||.+|++
T Consensus 82 L~~rV~dlgKf~K 94 (106)
T 1j1d_B 82 LRNRINDNQKVSK 94 (106)
T ss_dssp HHHHHHTC-----
T ss_pred HHHHHHHhcCccC
Confidence 9999999977988
No 3
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=99.95 E-value=3.2e-28 Score=205.74 Aligned_cols=90 Identities=26% Similarity=0.386 Sum_probs=84.1
Q ss_pred cchhhHHHHhhhhhHHHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHhhhhhhccHHHHHhhhhhhHHHHHH
Q psy9780 65 GLTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDLKELKE 144 (302)
Q Consensus 65 g~~L~kA~~~~~~~keq~~eeKkk~LaeR~kpL~id~l~~~~LrekakELh~~I~~LE~EKyDle~k~~rq~yeI~eL~~ 144 (302)
+++|++|..++.++.++.+++|++||++|||||||||||.++|+++|++||+||++||+++|||+.+|++|+|||++||+
T Consensus 21 ~lll~kA~e~l~kE~e~k~eeKkkiLaER~~pL~id~ls~~~L~e~~keLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~ 100 (133)
T 1j1d_C 21 TLLLQIAKQELEREAEERRGEKGRALSTRAQPLELAGLGFAELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQ 100 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHcchHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh-hhh
Q psy9780 145 RQKQQLR-HKA 154 (302)
Q Consensus 145 Rv~dl~k-fk~ 154 (302)
||+|+++ |++
T Consensus 101 rV~Dl~gKfkK 111 (133)
T 1j1d_C 101 KIFDLRGKFKR 111 (133)
T ss_dssp HHHHHC-----
T ss_pred HHHHHHcccCC
Confidence 9999975 988
No 4
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=99.94 E-value=2.6e-27 Score=208.66 Aligned_cols=100 Identities=24% Similarity=0.338 Sum_probs=87.7
Q ss_pred cchhhHHHHhhhhhHHHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHhhhhhhccHHHHHhhhhhhHHHHHH
Q psy9780 65 GLTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDLKELKE 144 (302)
Q Consensus 65 g~~L~kA~~~~~~~keq~~eeKkk~LaeR~kpL~id~l~~~~LrekakELh~~I~~LE~EKyDle~k~~rq~yeI~eL~~ 144 (302)
+++|++|..++..+.++.+++|++||++|||||||||||.++|+++|++||+||++||+++|||+.+|.+|+|||++|++
T Consensus 21 ~lll~kA~e~L~~E~e~k~eEKkkiLaER~kPLnid~Lse~~L~e~ckELh~~I~~LEeEKYDlE~kvkkqdyEI~dL~~ 100 (180)
T 1j1e_C 21 TLLLQIAKQELEREAEERRGEKGRALSTRAQPLELAGLGFAELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQ 100 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh-hhhhhcCCCch-hhcCCCCc
Q psy9780 145 RQKQQLR-HKALKKGLDPE-ALTGKYPV 170 (302)
Q Consensus 145 Rv~dl~k-fk~~~~g~dp~-~~~~~~p~ 170 (302)
+|+||++ |++ |. ..++.|..
T Consensus 101 rV~DLrGKFkK------P~LkkV~~s~d 122 (180)
T 1j1e_C 101 KIFDLRGKFKR------PTLRRVRISAD 122 (180)
T ss_dssp HHHHHC----------------CCCCHH
T ss_pred HHHHHHhcccc------cchhhhcccHH
Confidence 9999975 999 76 66777643
No 5
>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A
Probab=99.92 E-value=2e-26 Score=203.17 Aligned_cols=99 Identities=23% Similarity=0.288 Sum_probs=92.9
Q ss_pred cchhhHHHHhhhhhHHHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHhhhhhhccHHHHHhhhhhhHHHHHH
Q psy9780 65 GLTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDLKELKE 144 (302)
Q Consensus 65 g~~L~kA~~~~~~~keq~~eeKkk~LaeR~kpL~id~l~~~~LrekakELh~~I~~LE~EKyDle~k~~rq~yeI~eL~~ 144 (302)
+++|++|..++..+.++.+++|++||++||||||||| |.++|+++|++||+||++||+++|||+.+|.+|+|||++|++
T Consensus 19 ~lll~kA~e~L~~E~e~k~eeKkkiLaER~kPLnid~-se~~L~e~ckELh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~ 97 (182)
T 1ytz_I 19 SAMLQLAVTEIEKEAAAKEVEKQNYLAEHSPPLSLPG-SMQELQELSKKLHAKIDSVDEERYDTEVKLQKTNKELEDLSQ 97 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCCC-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHH
Confidence 4789999999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHh-hhhhhcCCCch-hhcCCCCc
Q psy9780 145 RQKQQLR-HKALKKGLDPE-ALTGKYPV 170 (302)
Q Consensus 145 Rv~dl~k-fk~~~~g~dp~-~~~~~~p~ 170 (302)
+|+||++ |++ |. ..++.++.
T Consensus 98 rVnDLrGKfkK------P~LkkV~~sad 119 (182)
T 1ytz_I 98 KLFDLRGKFKR------PPLRRVRMSAD 119 (182)
T ss_dssp TTGGGTCSCSS------CSSCCCCCCHH
T ss_pred HHHHHHhhhcc------cchhhccccHh
Confidence 9999986 999 76 66877754
No 6
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=99.90 E-value=1.2e-24 Score=178.09 Aligned_cols=77 Identities=39% Similarity=0.640 Sum_probs=67.9
Q ss_pred CCCCcccccCCcccchhHHHHHhhhcHHHHH-HHHHhhhhhccCCCCCCCCChHHHHHHHHHHHHHHHhhhhhhchHHHH
Q psy9780 217 KGPNFTIQRREPGLTLSTAQLERNKTKEQIE-EEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEER 295 (302)
Q Consensus 217 ~g~nf~~~kk~~~~~L~ka~~~~~~~k~q~~-eeKkk~LaeR~kpL~id~l~~d~LrekakELh~~i~~LE~EKyDle~k 295 (302)
||+|||+ ||++++. +.+++|++ ++|++||++|||||||||||+++|+++|++||+||++||+|||||+.+
T Consensus 1 m~~~~g~-------~~~k~e~--~~~k~q~e~EeKkkiLaER~~pL~id~l~~~~L~e~~keLh~~I~~lEeEKYDlE~k 71 (107)
T 1ytz_T 1 MGASYSS-------YLAKADQ--KRGKKQTARETKKKVLAERRKPLNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAEQ 71 (107)
T ss_dssp ---CCTT-------HHHHHHH--HHHHHHHHHHHHHHHHHHTCCCCCCSSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchhh-------HHHHHHh--cccHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 6889995 7877654 45689988 479999999999999999999999999999999999999999999999
Q ss_pred hhhccCC
Q psy9780 296 QKRQDYD 302 (302)
Q Consensus 296 ~~rq~Ye 302 (302)
|++|+||
T Consensus 72 v~kq~yE 78 (107)
T 1ytz_T 72 IKRKKYE 78 (107)
T ss_dssp HHHHHHH
T ss_pred HHhhhhH
Confidence 9999996
No 7
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=99.87 E-value=7.4e-24 Score=173.02 Aligned_cols=72 Identities=43% Similarity=0.628 Sum_probs=56.7
Q ss_pred chhH-HHHHhhhcHHHHH-HHHHhhhhhccCCCCCCCCChHHHHHHHHHHHHHHHhhhhhhchHHHHhhhccCC
Q psy9780 231 TLST-AQLERNKTKEQIE-EEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYD 302 (302)
Q Consensus 231 ~L~k-a~~~~~~~k~q~~-eeKkk~LaeR~kpL~id~l~~d~LrekakELh~~i~~LE~EKyDle~k~~rq~Ye 302 (302)
||++ |+.+++.+++|++ ++|++||++|||||||||||+++|+++|++||+||++||+|||||+.+|++|+||
T Consensus 5 ~l~~~~~~e~~~~k~q~ereeKkkiLaER~kpL~id~l~~~~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yE 78 (106)
T 1j1d_B 5 YIQKQAQTERKSGKRQTEREKKKKILAERRKVLAIDHLNEDQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYE 78 (106)
T ss_dssp ---------------CCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHhcccHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHH
Confidence 7887 3445667789988 8899999999999999999999999999999999999999999999999999996
No 8
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=99.84 E-value=1.9e-21 Score=164.38 Aligned_cols=73 Identities=29% Similarity=0.449 Sum_probs=70.3
Q ss_pred cchhHHHHHhhhcHHHHHHHHHhhhhhccCCCCCCCCChHHHHHHHHHHHHHHHhhhhhhchHHHHhhhccCC
Q psy9780 230 LTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYD 302 (302)
Q Consensus 230 ~~L~ka~~~~~~~k~q~~eeKkk~LaeR~kpL~id~l~~d~LrekakELh~~i~~LE~EKyDle~k~~rq~Ye 302 (302)
.+|++|..++..+.++.+++|++||++|||||||||||+++|+++|++||+||++||+|+|||+++|++|+||
T Consensus 22 lll~kA~e~l~kE~e~k~eeKkkiLaER~~pL~id~ls~~~L~e~~keLh~~I~~LEeEKYDlE~kvkkq~yE 94 (133)
T 1j1d_C 22 LLLQIAKQELEREAEERRGEKGRALSTRAQPLELAGLGFAELQDLARQLHARVDKVDEERYDIEAKVTKNITE 94 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHcchH
Confidence 3789999999998999999999999999999999999999999999999999999999999999999999996
No 9
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=99.80 E-value=1.9e-20 Score=164.99 Aligned_cols=73 Identities=29% Similarity=0.449 Sum_probs=70.2
Q ss_pred cchhHHHHHhhhcHHHHHHHHHhhhhhccCCCCCCCCChHHHHHHHHHHHHHHHhhhhhhchHHHHhhhccCC
Q psy9780 230 LTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYD 302 (302)
Q Consensus 230 ~~L~ka~~~~~~~k~q~~eeKkk~LaeR~kpL~id~l~~d~LrekakELh~~i~~LE~EKyDle~k~~rq~Ye 302 (302)
.+|++|..++..+.++.+++|++||++|||||||||||+++|+++|++||+||++||+++|||+++|.+|+||
T Consensus 22 lll~kA~e~L~~E~e~k~eEKkkiLaER~kPLnid~Lse~~L~e~ckELh~~I~~LEeEKYDlE~kvkkqdyE 94 (180)
T 1j1e_C 22 LLLQIAKQELEREAEERRGEKGRALSTRAQPLELAGLGFAELQDLARQLHARVDKVDEERYDIEAKVTKNITE 94 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchh
Confidence 3789999999998888999999999999999999999999999999999999999999999999999999996
No 10
>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A
Probab=99.77 E-value=1.7e-19 Score=159.19 Aligned_cols=71 Identities=27% Similarity=0.369 Sum_probs=68.4
Q ss_pred chhHHHHHhhhcHHHHHHHHHhhhhhccCCCCCCCCChHHHHHHHHHHHHHHHhhhhhhchHHHHhhhccCC
Q psy9780 231 TLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYD 302 (302)
Q Consensus 231 ~L~ka~~~~~~~k~q~~eeKkk~LaeR~kpL~id~l~~d~LrekakELh~~i~~LE~EKyDle~k~~rq~Ye 302 (302)
+|++|..++..+.++.+++|++||++||||||||| |.++|+++|++||+||++||+++|||+++|.+|+||
T Consensus 21 ll~kA~e~L~~E~e~k~eeKkkiLaER~kPLnid~-se~~L~e~ckELh~~I~~LEeEKYDlE~kvkkq~yE 91 (182)
T 1ytz_I 21 MLQLAVTEIEKEAAAKEVEKQNYLAEHSPPLSLPG-SMQELQELSKKLHAKIDSVDEERYDTEVKLQKTNKE 91 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCCC-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHH
Confidence 78999999998888888999999999999999999 999999999999999999999999999999999995
No 11
>1a2x_B Troponin I; muscle contraction regulation, complex (skeletal muscle/muscle protein); 2.30A {Oryctolagus cuniculus} SCOP: j.22.1.1
Probab=88.93 E-value=0.088 Score=36.87 Aligned_cols=29 Identities=28% Similarity=0.226 Sum_probs=13.8
Q ss_pred cchhhHHHHhhhhhHHHHHHHHHHHhhhc
Q psy9780 65 GLTLSTAQLERNKTKEQIEEEKKIALNIR 93 (302)
Q Consensus 65 g~~L~kA~~~~~~~keq~~eeKkk~LaeR 93 (302)
++||++|..++..+..+.+++|.+||++|
T Consensus 19 slmL~~A~~~Le~E~~~k~~eK~~~L~Er 47 (47)
T 1a2x_B 19 SVMLQIAATELEKEEGRREAEKQNYLAEH 47 (47)
T ss_dssp HHHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 58999999999999999999999999986
No 12
>1a2x_B Troponin I; muscle contraction regulation, complex (skeletal muscle/muscle protein); 2.30A {Oryctolagus cuniculus} SCOP: j.22.1.1
Probab=75.78 E-value=0.76 Score=32.07 Aligned_cols=28 Identities=29% Similarity=0.229 Sum_probs=12.3
Q ss_pred cchhHHHHHhhhcHHHHHHHHHhhhhhc
Q psy9780 230 LTLSTAQLERNKTKEQIEEEKKIALNIR 257 (302)
Q Consensus 230 ~~L~ka~~~~~~~k~q~~eeKkk~LaeR 257 (302)
.||++|...+..+..+..++|.+||++|
T Consensus 20 lmL~~A~~~Le~E~~~k~~eK~~~L~Er 47 (47)
T 1a2x_B 20 VMLQIAATELEKEEGRREAEKQNYLAEH 47 (47)
T ss_dssp HHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3799999999998888889999999986
No 13
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=60.00 E-value=6.6 Score=32.73 Aligned_cols=105 Identities=15% Similarity=0.109 Sum_probs=60.1
Q ss_pred HHHHhhhhhhcCCCCCcccccCCCcchhhHHHHhhhhhHHH---------HHHHHHHHhhhccCCCCCCCCCHHHHHHHH
Q psy9780 41 MMAALKEQTNKSKGPNFTIQRREPGLTLSTAQLERNKTKEQ---------IEEEKKIALNIRIKPLNVEGWSIHKLQAKA 111 (302)
Q Consensus 41 ~~~a~k~~~~~~~g~nf~i~k~~~g~~L~kA~~~~~~~keq---------~~eeKkk~LaeR~kpL~id~l~~~~Lreka 111 (302)
||+.+..-...-.|..|+|.-.+.-.+|..+...+...-.+ .-..+-.+|+ .|||.| .--.++..+
T Consensus 3 ~Ms~k~~V~V~I~Gk~Y~i~g~e~ee~L~~vA~~vd~km~ei~~~~~~~~l~~~r~aVLa----ALNiad-El~k~~~~~ 77 (138)
T 3hnw_A 3 AMSSKNTAEVILGGKVIKLGGYESEEYLQRVASYINNKITEFNKEESYRRMSAELRTDMM----YLNIAD-DYFKAKKMA 77 (138)
T ss_dssp ------CEEEEETTEEEEECSCSCHHHHHHHHHHHHHHHHHHTTCHHHHTSCHHHHHHHH----HHHHHH-HHHHHHHHH
T ss_pred cCCCCCeeEEEECCEEEEecCCCcHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHH----HHHHHH-HHHHHHHHH
Confidence 44543322233478899886433225676654333211111 1134445554 456655 445678888
Q ss_pred HHHHHHHHhhhhhhccHHHHHhhhhhhHHHHHHHHHHHH
Q psy9780 112 TELWETIVKLETDKYDLEERQKRQDYDLKELKERQKQQL 150 (302)
Q Consensus 112 kELh~~I~~LE~EKyDle~k~~rq~yeI~eL~~Rv~dl~ 150 (302)
..|-..|..++.+-|||-..+..-.-.+..+...+.+++
T Consensus 78 ~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~ 116 (138)
T 3hnw_A 78 DSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELK 116 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999988877776666666665555554
No 14
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D
Probab=29.58 E-value=3.9e+02 Score=25.81 Aligned_cols=63 Identities=21% Similarity=0.233 Sum_probs=37.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhhhh------------hc--cHHHHHhhhhhhHHHHHHHHHHHHh-hhhh--hcCCCc
Q psy9780 99 VEGWSIHKLQAKATELWETIVKLETD------------KY--DLEERQKRQDYDLKELKERQKQQLR-HKAL--KKGLDP 161 (302)
Q Consensus 99 id~l~~~~LrekakELh~~I~~LE~E------------Ky--Dle~k~~rq~yeI~eL~~Rv~dl~k-fk~~--~~g~dp 161 (302)
.+.+|.+.|..-|.+|...|..|+.+ +| -+..-+..-.-+|..|..-...+.. |..+ -=|-||
T Consensus 278 Aakvs~~~l~~dl~~L~~~l~~v~~~l~~~~~~~~~~d~f~~~m~~Fl~~A~~~~~~L~~~~~~~~~~~~~l~~yFgedp 357 (457)
T 3obv_E 278 ASRVSAENLQKSLDQMKKQIADVERDVQNFPAATDEKDKFVEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDP 357 (457)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHHHHHHHSCCCCSSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCT
T ss_pred hccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 35778888888888888888777642 33 1333444555556666665555543 5544 224455
No 15
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=27.27 E-value=1.3e+02 Score=22.53 Aligned_cols=56 Identities=16% Similarity=0.053 Sum_probs=40.7
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhhhhccHHHHHhhhhhhHHHHHHHHHHHH-hhhhhh
Q psy9780 101 GWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDLKELKERQKQQL-RHKALK 156 (302)
Q Consensus 101 ~l~~~~LrekakELh~~I~~LE~EKyDle~k~~rq~yeI~eL~~Rv~dl~-kfk~~~ 156 (302)
++..+.|.+.+.+|=-+|.-.|.-==+|..-|.+|..+|..|..++..|. +++.+.
T Consensus 6 ~~~~~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 6 SPRDQELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45667788888888888887777777888888888888888888888886 355543
No 16
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=22.98 E-value=1.4e+02 Score=22.71 Aligned_cols=58 Identities=7% Similarity=0.009 Sum_probs=41.9
Q ss_pred hccCCCCCCCCCHHHHHHHHHHHHHHHHhhhhhhccHHHHHhhhhhhHHHHHHHHHHHH
Q psy9780 92 IRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDLKELKERQKQQL 150 (302)
Q Consensus 92 eR~kpL~id~l~~~~LrekakELh~~I~~LE~EKyDle~k~~rq~yeI~eL~~Rv~dl~ 150 (302)
..||- .=+.++++........+...|..+...-.+|...+..-.-+|..|...+.++-
T Consensus 48 ~~CPv-Cgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~~~~ 105 (112)
T 1l8d_A 48 GKCPV-CGRELTDEHREELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIKRLT 105 (112)
T ss_dssp EECTT-TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCCC-CCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35744 34445666666777888888888888888888888887778888888777443
No 17
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=20.86 E-value=1.3e+02 Score=22.81 Aligned_cols=40 Identities=30% Similarity=0.416 Sum_probs=34.1
Q ss_pred HHHHHHHHHhhhhhhccHHHHHhhhhhhHHHHHHHHHHHH
Q psy9780 111 ATELWETIVKLETDKYDLEERQKRQDYDLKELKERQKQQL 150 (302)
Q Consensus 111 akELh~~I~~LE~EKyDle~k~~rq~yeI~eL~~Rv~dl~ 150 (302)
.-+|...|..|..|-=.|-=.+..+.|+|+.|..+..++-
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y 61 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIL 61 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3568888888888888888899999999999999888864
Done!