Query psy9780
Match_columns 302
No_of_seqs 327 out of 570
Neff 4.9
Searched_HMMs 13730
Date Fri Aug 16 19:24:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9780.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/9780hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nkpa_ a.38.1.1 (A:) Myc prot 29.1 55 0.004 22.6 5.7 60 88-150 26-86 (88)
2 d1v63a_ a.21.1.1 (A:) Nucleola 16.2 35 0.0025 24.0 2.2 41 99-139 29-69 (101)
3 d2a1ja1 a.60.2.5 (A:837-898) D 15.7 41 0.003 21.9 2.3 34 251-284 16-56 (62)
4 d1nkpb_ a.38.1.1 (B:) Max prot 14.5 1.1E+02 0.0077 20.7 4.5 56 90-148 24-79 (83)
5 d1v63a_ a.21.1.1 (A:) Nucleola 13.7 25 0.0018 24.8 0.7 35 263-297 29-63 (101)
6 d1x4ta1 a.2.15.1 (A:7-86) Pre- 13.4 1.3E+02 0.0097 21.1 4.8 35 108-150 25-59 (80)
7 d1c4ka3 d.125.1.1 (A:570-730) 10.1 64 0.0047 25.6 2.3 15 106-120 22-36 (161)
8 d2zjrv1 a.2.2.1 (V:1-66) Ribos 9.8 1.3E+02 0.0093 19.9 3.5 24 95-118 2-25 (66)
9 d1zrja1 a.140.2.1 (A:1-37) Het 8.9 76 0.0055 19.1 1.7 17 97-113 1-17 (37)
10 d1hlva2 a.4.1.7 (A:67-131) DNA 8.6 1.2E+02 0.0088 19.8 2.9 19 266-284 29-47 (65)
No 1
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.07 E-value=55 Score=22.55 Aligned_cols=60 Identities=20% Similarity=0.132 Sum_probs=31.7
Q ss_pred HHhhhccCCCCC-CCCCHHHHHHHHHHHHHHHHhhhhhhccHHHHHhhhhhhHHHHHHHHHHHH
Q psy9780 88 IALNIRIKPLNV-EGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDLKELKERQKQQL 150 (302)
Q Consensus 88 k~LaeR~kpL~i-d~l~~~~LrekakELh~~I~~LE~EKyDle~k~~rq~yeI~eL~~Rv~dl~ 150 (302)
..|...+||++. ..+|-..+-..|.++-.++ ...--.+...+..-.-....|..++.+|+
T Consensus 26 ~~Lr~llP~~~~~~k~sK~~iL~~A~~yI~~L---~~~~~~l~~~~~~l~~~~~~L~~~l~~L~ 86 (88)
T d1nkpa_ 26 FALRDQIPELENNEKAPKVVILKKATAYILSV---QAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCCCCCCCccCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345667777643 4477777666665554433 32323333333333444555666666654
No 2
>d1v63a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=16.15 E-value=35 Score=23.98 Aligned_cols=41 Identities=10% Similarity=0.359 Sum_probs=29.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhhhhhccHHHHHhhhhhhH
Q psy9780 99 VEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDL 139 (302)
Q Consensus 99 id~l~~~~LrekakELh~~I~~LE~EKyDle~k~~rq~yeI 139 (302)
..|++..++--.|-++|..|..-+=..|.-.....+..|..
T Consensus 29 ~~~~~~~ei~k~~g~~Wk~ls~~eK~~Y~~~a~~~~~~y~~ 69 (101)
T d1v63a_ 29 LNHLPLKERMVEIGSRWQRISQSQKEHYKKLAEEQQRQYKV 69 (101)
T ss_dssp TTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888888777777776666555555543
No 3
>d2a1ja1 a.60.2.5 (A:837-898) DNA repair endonuclease XPF {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.71 E-value=41 Score=21.91 Aligned_cols=34 Identities=24% Similarity=0.304 Sum_probs=25.3
Q ss_pred HhhhhhccCCC-CCCCCChHHHH------HHHHHHHHHHHh
Q psy9780 251 KIALNIRIKPL-NVEGWSIHKLQ------AKATELWETIVK 284 (302)
Q Consensus 251 kk~LaeR~kpL-~id~l~~d~Lr------ekakELh~~i~~ 284 (302)
.+.|..+++.+ +|.++|.++|. ..|+.+|+.++.
T Consensus 16 ~~~Ll~~f~Si~~l~~As~~eL~~v~G~~~~A~~i~~f~~~ 56 (62)
T d2a1ja1 16 CRSLMHHVKNIAELAALSQDELTSILGNAANAKQLYDFIHT 56 (62)
T ss_dssp HHHHHHHCSSHHHHHTCCHHHHHHHHSCHHHHHHHHHHHHC
T ss_pred HHHHHHHhccHHHHHhCCHHHHHHCcCcHHHHHHHHHHHhh
Confidence 34456788886 78899999994 457788888763
No 4
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.47 E-value=1.1e+02 Score=20.69 Aligned_cols=56 Identities=18% Similarity=0.120 Sum_probs=25.4
Q ss_pred hhhccCCCCCCCCCHHHHHHHHHHHHHHHHhhhhhhccHHHHHhhhhhhHHHHHHHHHH
Q psy9780 90 LNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDLKELKERQKQ 148 (302)
Q Consensus 90 LaeR~kpL~id~l~~~~LrekakELh~~I~~LE~EKyDle~k~~rq~yeI~eL~~Rv~d 148 (302)
|..-+|++.-+.+|-..+-..|-++ |..|...--++...+....-+...|..+|..
T Consensus 24 L~~llP~~~~~k~sK~~iL~~A~~y---I~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~ 79 (83)
T d1nkpb_ 24 LRDSVPSLQGEKASRAQILDKATEY---IQYMRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHTTSGGGTTSCCCHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhCCCCCCCCCHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555566666555555433 3333333333443333333334445544443
No 5
>d1v63a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=13.66 E-value=25 Score=24.82 Aligned_cols=35 Identities=9% Similarity=0.287 Sum_probs=21.8
Q ss_pred CCCCChHHHHHHHHHHHHHHHhhhhhhchHHHHhh
Q psy9780 263 VEGWSIHKLQAKATELWETIVKLETDKYDLEERQK 297 (302)
Q Consensus 263 id~l~~d~LrekakELh~~i~~LE~EKyDle~k~~ 297 (302)
..|++..++-..|-++|..|..-|-..|.-.....
T Consensus 29 ~~~~~~~ei~k~~g~~Wk~ls~~eK~~Y~~~a~~~ 63 (101)
T d1v63a_ 29 LNHLPLKERMVEIGSRWQRISQSQKEHYKKLAEEQ 63 (101)
T ss_dssp TTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Confidence 34566777777777777777666655555444333
No 6
>d1x4ta1 a.2.15.1 (A:7-86) Pre-mRNA-splicing factor ISY1 homolog {Mouse (Mus musculus) [TaxId: 10090]}
Probab=13.41 E-value=1.3e+02 Score=21.07 Aligned_cols=35 Identities=9% Similarity=0.339 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHhhhhhhccHHHHHhhhhhhHHHHHHHHHHHH
Q psy9780 108 QAKATELWETIVKLETDKYDLEERQKRQDYDLKELKERQKQQL 150 (302)
Q Consensus 108 rekakELh~~I~~LE~EKyDle~k~~rq~yeI~eL~~Rv~dl~ 150 (302)
....+|+-..|..+-..-- .+|.|.+||-.||.|-
T Consensus 25 ~~iikEI~~kvs~Iqn~~L--------~e~~IRdLNDeINkL~ 59 (80)
T d1x4ta1 25 RQIIGEISKKVAQIQNAGL--------GEFRIRDLNDEINKLL 59 (80)
T ss_dssp HHHHHHHHHHHHHHHHCCS--------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCC--------CHHHHHHHHHHHHHHH
Confidence 4555666666655544433 4566677777666653
No 7
>d1c4ka3 d.125.1.1 (A:570-730) Ornithine decarboxylase C-terminal domain {Lactobacillus sp., strain 30a [TaxId: 1591]}
Probab=10.11 E-value=64 Score=25.57 Aligned_cols=15 Identities=13% Similarity=0.191 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHh
Q psy9780 106 KLQAKATELWETIVK 120 (302)
Q Consensus 106 ~LrekakELh~~I~~ 120 (302)
.|+++|.+||+.+..
T Consensus 22 ~LrdLc~~mH~~~~~ 36 (161)
T d1c4ka3 22 TIRELCQELHDFYKN 36 (161)
T ss_dssp BHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHh
Confidence 589999999999855
No 8
>d2zjrv1 a.2.2.1 (V:1-66) Ribosomal protein L29 (L29p) {Deinococcus radiodurans [TaxId: 1299]}
Probab=9.83 E-value=1.3e+02 Score=19.88 Aligned_cols=24 Identities=8% Similarity=0.154 Sum_probs=17.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHH
Q psy9780 95 KPLNVEGWSIHKLQAKATELWETI 118 (302)
Q Consensus 95 kpL~id~l~~~~LrekakELh~~I 118 (302)
++-+|-++|.++|.+...+|-.-+
T Consensus 2 K~~elr~~s~~eL~~~l~~lk~el 25 (66)
T d2zjrv1 2 KPSEMRNLQATDFAKEIDARKKEL 25 (66)
T ss_dssp CSTTTTTSCHHHHHHHHHTHHHHH
T ss_pred CHHHHHhCCHHHHHHHHHHHHHHH
Confidence 456788899999888776666555
No 9
>d1zrja1 a.140.2.1 (A:1-37) Heterogeneous nuclear ribonucleoprotein U-like protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.85 E-value=76 Score=19.11 Aligned_cols=17 Identities=12% Similarity=0.366 Sum_probs=13.1
Q ss_pred CCCCCCCHHHHHHHHHH
Q psy9780 97 LNVEGWSIHKLQAKATE 113 (302)
Q Consensus 97 L~id~l~~~~LrekakE 113 (302)
+|++.|...+|++.|+.
T Consensus 1 ~d~~~m~V~eLK~~Lk~ 17 (37)
T d1zrja1 1 MDVRRLKVNELREELQR 17 (37)
T ss_dssp CCGGGSCHHHHHHHHHH
T ss_pred CChHHCcHHHHHHHHHH
Confidence 46778888888888864
No 10
>d1hlva2 a.4.1.7 (A:67-131) DNA-binding domain of centromere binding protein B (CENP-B) {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.63 E-value=1.2e+02 Score=19.78 Aligned_cols=19 Identities=21% Similarity=-0.003 Sum_probs=16.3
Q ss_pred CChHHHHHHHHHHHHHHHh
Q psy9780 266 WSIHKLQAKATELWETIVK 284 (302)
Q Consensus 266 l~~d~LrekakELh~~i~~ 284 (302)
+|...|+++|.+|+..|..
T Consensus 29 vs~~~i~~kA~~~a~~l~~ 47 (65)
T d1hlva2 29 VKGIILKEKALRIAEELGM 47 (65)
T ss_dssp CCHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHhCC
Confidence 5779999999999999853
Done!