RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9780
(302 letters)
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium,
contractIle protein; HET: DR6; 3.00A {Gallus gallus}
SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Length = 107
Score = 68.0 bits (166), Expect = 1e-14
Identities = 33/98 (33%), Positives = 54/98 (55%), Gaps = 2/98 (2%)
Query: 71 AQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEE 130
++ K+ E KK L R KPLN++ + KL+ KA ELW+ + +L+T+KYD E
Sbjct: 11 KADQKRGKKQTARETKKKVLAERRKPLNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAE 70
Query: 131 RQKRQDYDLKELKERQKQQLRHKALKKGLDPEALTGKY 168
+ KR+ Y++ L+ R Q +H KK + G++
Sbjct: 71 QIKRKKYEIVTLRNRIDQAQKHS--KKAGAKGKVGGRW 106
Score = 55.7 bits (134), Expect = 3e-10
Identities = 26/68 (38%), Positives = 41/68 (60%)
Query: 235 AQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEE 294
++ K+ E KK L R KPLN++ + KL+ KA ELW+ + +L+T+KYD E
Sbjct: 11 KADQKRGKKQTARETKKKVLAERRKPLNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAE 70
Query: 295 RQKRQDYD 302
+ KR+ Y+
Sbjct: 71 QIKRKKYE 78
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding
protein, EF- hand, coiled-coil, contractIle protein;
2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Length = 106
Score = 62.3 bits (151), Expect = 1e-12
Identities = 34/94 (36%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 65 GLTLSTAQLERNKTKEQIEEEKKIA-LNIRIKPLNVEGWSIHKLQAKATELWETIVKLET 123
G AQ ER K Q E EKK L R K L ++ + +L+ KA ELW+TI LE
Sbjct: 4 GYIQKQAQTERKSGKRQTEREKKKKILAERRKVLAIDHLNEDQLREKAKELWQTIYNLEA 63
Query: 124 DKYDLEERQKRQDYDLKELKERQKQQLRHKALKK 157
+K+DL+E+ K+Q Y++ L+ R + +
Sbjct: 64 EKFDLQEKFKQQKYEINVLRNRINDNQKVSKTRG 97
Score = 53.1 bits (127), Expect = 2e-09
Identities = 32/75 (42%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 229 GLTLSTAQLERNKTKEQIEEEKKIA-LNIRIKPLNVEGWSIHKLQAKATELWETIVKLET 287
G AQ ER K Q E EKK L R K L ++ + +L+ KA ELW+TI LE
Sbjct: 4 GYIQKQAQTERKSGKRQTEREKKKKILAERRKVLAIDHLNEDQLREKAKELWQTIYNLEA 63
Query: 288 DKYDLEERQKRQDYD 302
+K+DL+E+ K+Q Y+
Sbjct: 64 EKFDLQEKFKQQKYE 78
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 61.0 bits (148), Expect = 1e-10
Identities = 58/259 (22%), Positives = 108/259 (41%), Gaps = 15/259 (5%)
Query: 1 MAQRKKEEEERRQREVEEKK--QRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFT 58
M R +EEEER Q+ EKK Q+ + + ++LEE E RQ + K K
Sbjct: 932 MEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDD 991
Query: 59 IQRREPGLTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETI 118
I E T + + + + + K L +K ++ +EL +
Sbjct: 992 ILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKL---KNKHESMISELEVRL 1048
Query: 119 VKLETDKYDLEERQKRQDYDLKELK------ERQKQQLRHKALKKGLDPEALTGKYPVKE 172
K E + +LE+ +++ + + +L + Q +L+ + KK + +A + E
Sbjct: 1049 KKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARL---E 1105
Query: 173 EERRQREVEEKKQRDLEEKRQRL-EEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPGLT 231
+E Q+ KK R+LE L E+ E ++ A A K++ + S+ E L
Sbjct: 1106 DETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLD 1165
Query: 232 LSTAQLERNKTKEQIEEEK 250
+ Q E + + +++K
Sbjct: 1166 TTATQQELRGSDYKDDDDK 1184
Score = 52.5 bits (126), Expect = 8e-08
Identities = 54/300 (18%), Positives = 116/300 (38%), Gaps = 24/300 (8%)
Query: 2 AQRKKEEEERRQREVEEKKQRDLEEK--RQRLEEAEKKRQAMMAALKEQTNKSKGPNFTI 59
+ ++++ E +E+E+K + EEK Q +AE + A ++ + K
Sbjct: 869 TKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKK-----Q 923
Query: 60 QRREPGLTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIV 119
+ E + E + +Q++ EKK + L+ + E
Sbjct: 924 ELEEILHEMEARIEEEEERSQQLQAEKKKMQQQ-----------MLDLEEQLEEEEAARQ 972
Query: 120 KLETDKYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLDPEALTGKYPVKEEERRQRE 179
KL+ +K + + K+ + D+ ++++ + + + L + + T +E+ + +
Sbjct: 973 KLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTK 1032
Query: 180 VEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPGLT-----LST 234
++ K + + E RL++ EK RQ + ++ +S + I + + L+
Sbjct: 1033 LKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAK 1092
Query: 235 AQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEE 294
+ E ++E+E N K +E I LQ K E K DL E
Sbjct: 1093 KEEELQAALARLEDETSQKNNALKKIRELES-HISDLQEDLESEKAARNKAEKQKRDLSE 1151
Score = 44.4 bits (105), Expect = 3e-05
Identities = 49/284 (17%), Positives = 118/284 (41%), Gaps = 46/284 (16%)
Query: 27 KRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPGLTLSTAQLERNKTKEQIEEEK 86
K R EE + + + KE+ K++ + +E + E+N +E+++ E
Sbjct: 851 KVTRQEEEMQAKDEELQRTKERQQKAEA-----ELKELEQKHTQLCEEKNLLQEKLQAET 905
Query: 87 KIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDLKELKERQ 146
++ E E V+L K +LEE + ++E +ER
Sbjct: 906 ELYA----------------------EAEEMRVRLAAKKQELEEILHEMEARIEEEEERS 943
Query: 147 KQQLRHKALKKGLDPEALTGKYPVKEEERRQREVEEKKQ------RDLEEKRQRLEEAEK 200
+Q +A KK + + L + ++EEE +++++ +K + +E+ +E+
Sbjct: 944 QQL---QAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNN 1000
Query: 201 KRQAMMAALKEQTNKSKGPNFTIQRREPGLTLSTAQLER--NKTKEQIEEEKKIALNIRI 258
K L+E+ + + + LT + E ++ + ++++E+K +
Sbjct: 1001 KLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEK 1060
Query: 259 KPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYD 302
KL+ ++++L E I +L+ +L+ + +++ +
Sbjct: 1061 I--------KRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEE 1096
Score = 27.1 bits (60), Expect = 9.6
Identities = 39/236 (16%), Positives = 79/236 (33%), Gaps = 19/236 (8%)
Query: 65 GLTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETD 124
G + + E+ + K + I + G+ K AK + E+I ++ +
Sbjct: 769 GQSKIFFRTGVLAHLEEERDLKITDVIIAFQA-QCRGYLARKAFAKRQQQLESIFCIQYN 827
Query: 125 KYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLDPEALTGKYPVKEEERRQREVEEKK 184
L + R + + D E K ++ E +E+E+K
Sbjct: 828 VRSFMNVXHWPWMXLFFXIXPLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKH 887
Query: 185 QRDLEEK--RQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPGLTLSTAQLERNKT 242
+ EEK Q +AE + A ++ + K + E + E +
Sbjct: 888 TQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKK-----QELEEILHEMEARIEEEEER 942
Query: 243 KEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKR 298
+Q++ EKK + L+ + E KL+ +K + + K+
Sbjct: 943 SQQLQAEKKKMQQQ-----------MLDLEEQLEEEEAARQKLQLEKVTADGKIKK 987
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 59.0 bits (143), Expect = 6e-10
Identities = 28/197 (14%), Positives = 77/197 (39%), Gaps = 25/197 (12%)
Query: 3 QRKKEEEERRQREVEEKK---QRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTI 59
+K + E R ++ + + + +++++E K+ ++++ + +
Sbjct: 906 LKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKL 965
Query: 60 QRREPGLTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIV 119
+ +L ++ + + + ++L I L E +H+ Q + + E
Sbjct: 966 RSDV-------ERLRMSEEEAKNATNRVLSLQEEIAKLRKE---LHQTQTEKKTIEEWAD 1015
Query: 120 KLETDKYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLDPEALTGKYPVKEEERRQRE 179
K + + L K Q+ LK KE +++ +A + + E++ E
Sbjct: 1016 KYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEI------------TETMEKKLVE 1063
Query: 180 VEEKKQRDLEEKRQRLE 196
++ + DL ++R R +
Sbjct: 1064 ETKQLELDLNDERLRYQ 1080
Score = 52.4 bits (126), Expect = 8e-08
Identities = 34/248 (13%), Positives = 75/248 (30%), Gaps = 17/248 (6%)
Query: 6 KEEEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPG 65
+ R V K Q L E + + + + I +
Sbjct: 844 ALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKA-------IVYLQCC 896
Query: 66 LTLSTAQLERNKTKEQIE-----EEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVK 120
A+ E K K + ++ I L +I L I + + L E +
Sbjct: 897 YRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQ---RKIDEQNKEYKSLLEKMNN 953
Query: 121 LETDKYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLDPEALTGKY-PVKEEERRQRE 179
LE E+ + L + E + + ++ L + L + + E++ E
Sbjct: 954 LEITYSTETEKLRSDVERL-RMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEE 1012
Query: 180 VEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPGLTLSTAQLER 239
+K + + E+ L+E + L + + ++ +L+
Sbjct: 1013 WADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDL 1072
Query: 240 NKTKEQIE 247
N + + +
Sbjct: 1073 NDERLRYQ 1080
Score = 49.0 bits (117), Expect = 1e-06
Identities = 29/246 (11%), Positives = 81/246 (32%), Gaps = 25/246 (10%)
Query: 56 NFTIQRREPGLTLSTAQLERNKTKEQIEEEKKIALNI--RIKPLNVEGWSIHKLQAKATE 113
T RR + +++ + + + + ++ V L+ +
Sbjct: 809 YATFLRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSI 868
Query: 114 LWETIVKLETDKYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLDPEALTGKYPVKEE 173
+ + V+ + R + L+ R + K LK EA
Sbjct: 869 IIQKHVRGWLAR-VHYHRTLKAIVYLQCCYRRMMAKRELKKLKI----EA--------RS 915
Query: 174 ERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPGLTLS 233
R +++ + + + +++++E K+ ++++ + ++
Sbjct: 916 VERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDV------ 969
Query: 234 TAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLE 293
+L ++ + + + ++L I L E +H+ Q + + E K + + L
Sbjct: 970 -ERLRMSEEEAKNATNRVLSLQEEIAKLRKE---LHQTQTEKKTIEEWADKYKHETEQLV 1025
Query: 294 ERQKRQ 299
K Q
Sbjct: 1026 SELKEQ 1031
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding
protein, EF- hand, coiled-coil, contractIle protein;
2.61A {Homo sapiens} SCOP: h.1.25.2
Length = 133
Score = 53.7 bits (129), Expect = 2e-09
Identities = 22/80 (27%), Positives = 43/80 (53%)
Query: 66 LTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDK 125
L L A+ E + E+ EK AL+ R +PL + G +LQ A +L + K++ ++
Sbjct: 22 LLLQIAKQELEREAEERRGEKGRALSTRAQPLELAGLGFAELQDLARQLHARVDKVDEER 81
Query: 126 YDLEERQKRQDYDLKELKER 145
YD+E + + ++ +L ++
Sbjct: 82 YDIEAKVTKNITEIADLTQK 101
Score = 49.5 bits (118), Expect = 8e-08
Identities = 21/73 (28%), Positives = 38/73 (52%)
Query: 230 LTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDK 289
L L A+ E + E+ EK AL+ R +PL + G +LQ A +L + K++ ++
Sbjct: 22 LLLQIAKQELEREAEERRGEKGRALSTRAQPLELAGLGFAELQDLARQLHARVDKVDEER 81
Query: 290 YDLEERQKRQDYD 302
YD+E + + +
Sbjct: 82 YDIEAKVTKNITE 94
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding
protein, EF- hand, coiled-coil, contractIle protein;
3.30A {Homo sapiens} SCOP: h.1.25.2
Length = 180
Score = 49.6 bits (118), Expect = 2e-07
Identities = 22/80 (27%), Positives = 43/80 (53%)
Query: 66 LTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDK 125
L L A+ E + E+ EK AL+ R +PL + G +LQ A +L + K++ ++
Sbjct: 22 LLLQIAKQELEREAEERRGEKGRALSTRAQPLELAGLGFAELQDLARQLHARVDKVDEER 81
Query: 126 YDLEERQKRQDYDLKELKER 145
YD+E + + ++ +L ++
Sbjct: 82 YDIEAKVTKNITEIADLTQK 101
Score = 45.3 bits (107), Expect = 4e-06
Identities = 21/73 (28%), Positives = 38/73 (52%)
Query: 230 LTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDK 289
L L A+ E + E+ EK AL+ R +PL + G +LQ A +L + K++ ++
Sbjct: 22 LLLQIAKQELEREAEERRGEKGRALSTRAQPLELAGLGFAELQDLARQLHARVDKVDEER 81
Query: 290 YDLEERQKRQDYD 302
YD+E + + +
Sbjct: 82 YDIEAKVTKNITE 94
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 50.4 bits (121), Expect = 3e-07
Identities = 21/201 (10%), Positives = 52/201 (25%), Gaps = 24/201 (11%)
Query: 3 QRKKEEEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRR 62
+ + ++ E EK Q AL+ + + K +Q+
Sbjct: 832 SLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKY 891
Query: 63 EPGLTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLE 122
K E K + L + T + + LE
Sbjct: 892 N----------RILKKLENWATTKSVYLGSN------------ETGDSITAVQAKLKNLE 929
Query: 123 TDKYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLDPEALTGKYPVKEEERRQREVEE 182
+ + + + + DL + + + + + + + + E +
Sbjct: 930 AFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQ--QWTGVKSSAETYK 987
Query: 183 KKQRDLEEKRQRLEEAEKKRQ 203
E+ Q++E+
Sbjct: 988 NTLLAELERLQKIEDLHHHHH 1008
Score = 46.6 bits (111), Expect = 6e-06
Identities = 41/253 (16%), Positives = 87/253 (34%), Gaps = 19/253 (7%)
Query: 24 LEEKR-QRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPGLTLSTAQLERN--KTKE 80
+EE R QRL + K + A + +++ R+ G ++ + Q N K +
Sbjct: 754 IEEAREQRLGSEQTKSDYLKRANELVQWI-NDKQASLESRDFGDSIESVQSFMNAHKEYK 812
Query: 81 QIEEEKKIALNIRIKPLNVE----------GWSIHKLQAKATELWETIVKLETDKYDLEE 130
+ E+ K ++ + + E+ T LE + + E
Sbjct: 813 KTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAE 872
Query: 131 RQKRQDYDLKELKERQKQQLRHKALKKGLDPEALTGK-YPVKEEERRQREVEEKKQRDLE 189
+ + LK K+ ++ + K L+ A T Y E + K ++LE
Sbjct: 873 ALRIE---LKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLE 929
Query: 190 EKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPGLTLSTAQLERNKTKEQIEEE 249
+ E + + + ++ Q + N + E T Q K+ + +
Sbjct: 930 AFDGECQSLEGQSNSDLLSILAQLTELNY-NGVPELTERKDTFFAQQWTGVKSSAETYKN 988
Query: 250 KKIALNIRIKPLN 262
+A R++ +
Sbjct: 989 TLLAELERLQKIE 1001
Score = 37.0 bits (86), Expect = 0.007
Identities = 13/98 (13%), Positives = 32/98 (32%), Gaps = 1/98 (1%)
Query: 1 MAQRKKEEEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQ 60
+ E + K ++LE + E + + + ++ Q + N +
Sbjct: 905 KSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNY-NGVPE 963
Query: 61 RREPGLTLSTAQLERNKTKEQIEEEKKIALNIRIKPLN 98
E T Q K+ + + +A R++ +
Sbjct: 964 LTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIE 1001
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 48.7 bits (115), Expect = 1e-06
Identities = 43/387 (11%), Positives = 111/387 (28%), Gaps = 122/387 (31%)
Query: 5 KKEEEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPN-----FTI 59
++EE Q+ VEE + + + ++ +++ M EQ ++ N + +
Sbjct: 72 LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131
Query: 60 QRREPGLTLSTAQLERNKTKEQIEEEKKIAL-----------------NIRIKPLNVEG- 101
R +P L L A LE + K + + + +++
Sbjct: 132 SRLQPYLKLRQALLE-------LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI 184
Query: 102 -W----SIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDLKELKERQKQQLRHKALK 156
W + + + L + + +++ + + + ++ ++ L+ K +
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244
Query: 157 KGL-------DPEAL------------TGKYPVKEEERRQREV------EEKKQRDLEEK 191
L + +A T R ++V L+
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLSCKILLTT----------RFKQVTDFLSAATTTHISLDHH 294
Query: 192 RQRLEEAEKK---------------RQA---------MMAA-LKEQTNKSKG-PNFTIQR 225
L E K R+ ++A +++ + +
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354
Query: 226 REPGLTLSTAQLERNKTKEQIEEEKKIAL---NIRIKPLNVEGWSIHKLQAKATELW--- 279
+ S LE + ++ + +++ + I P + L +W
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDR---LSVFPPSAHI-PTIL-------LSL----IWFDV 399
Query: 280 -----ETIVKLETDKYDLEERQKRQDY 301
+V +E++ K
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTI 426
Score = 42.1 bits (98), Expect = 2e-04
Identities = 24/121 (19%), Positives = 53/121 (43%), Gaps = 14/121 (11%)
Query: 135 QDYDLKELKERQKQQLRHKALKKGL-DPEALTGKYPV------KEEERRQREVEEKKQRD 187
++D K++++ K L + + + +A++G + K+EE Q+ VEE + +
Sbjct: 31 DNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN 90
Query: 188 LEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPN-----FTIQRREPGLTLSTA--QLERN 240
+ ++ +++ M EQ ++ N + + R +P L L A +L
Sbjct: 91 YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA 150
Query: 241 K 241
K
Sbjct: 151 K 151
Score = 34.8 bits (79), Expect = 0.037
Identities = 42/327 (12%), Positives = 97/327 (29%), Gaps = 105/327 (32%)
Query: 2 AQRKKEEEERRQREVEEKKQRDL-----EEKRQRL-EEAEK---KRQAMMAA-LKEQTNK 51
A + + + + L + + Q L E +R +++A +++
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT 343
Query: 52 SKG-PNFTIQRREPGLTLSTAQLERNKTKEQIEEEKKIAL---NIRIKPLNVEGWSIHKL 107
+ + + S LE + ++ + +++ + I P + L
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR---LSVFPPSAHI-PTIL-------L 392
Query: 108 QAKATELW--------ETIVKLETDKYDLEERQKRQDY-------DLKELKERQKQQLRH 152
+W +V +E++ K +LK +K + L H
Sbjct: 393 SL----IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK-VKLENEYAL-H 446
Query: 153 KAL------KKGLDPEALTGK-----------YPVKEEERRQREVE-----------EKK 184
+++ K D + L + +K E +R E+K
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK 506
Query: 185 QR-----------------DLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRRE 227
R L+ + + + + K + ++ A+ +F + + E
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL---------DF-LPKIE 556
Query: 228 PGLTLST----AQLERNKTKEQIEEEK 250
L S ++ E I EE
Sbjct: 557 ENLICSKYTDLLRIALMAEDEAIFEEA 583
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 46.6 bits (111), Expect = 7e-06
Identities = 24/209 (11%), Positives = 66/209 (31%), Gaps = 16/209 (7%)
Query: 3 QRKKEEEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRR 62
+ KK E+ + +EV + + + +L +++ A L S +
Sbjct: 802 EYKKTEKPPKGQEVS-ELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQ 860
Query: 63 EPGLTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLE 122
E L + K +++ +I + + + + E ++I ++
Sbjct: 861 EHAEALRIELKRQKKIAVLLQKYNRILKKLENW------ATTKSVYLGSNETGDSITAVQ 914
Query: 123 TDKYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLDPEALTGKYPVKEEERRQREVEE 182
+LE + L+ + L ++ L G V E R+
Sbjct: 915 AKLKNLEAFDGE----CQSLEGQSNSDL--LSILAQLTELNYNG---VPELTERKDTFFA 965
Query: 183 KKQRDLEEKRQRLEEAEKKRQAMMAALKE 211
++ ++ + + + +++
Sbjct: 966 QQWTGVKSSAETYKNTLLAELERLQKIED 994
Score = 44.7 bits (106), Expect = 3e-05
Identities = 29/194 (14%), Positives = 68/194 (35%), Gaps = 9/194 (4%)
Query: 77 KTKEQIEEEKKIALNIRIKPL---NVEGWSIHKLQAKATELWETIVKLETDKYDLEERQK 133
K ++ E+ K ++ + + K + T ++++ LE+ ++
Sbjct: 801 KEYKKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQ 860
Query: 134 RQDYDLKELKERQKQ-----QLRHKALKKGLDPEALTGKYPVKEEERRQREVEEKKQRDL 188
L+ +RQK+ Q ++ LKK + Y E + K ++L
Sbjct: 861 EHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNL 920
Query: 189 EEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPGLTLSTAQLERNKTKEQIEE 248
E + E + + + ++ Q + N + E T Q K+ + +
Sbjct: 921 EAFDGECQSLEGQSNSDLLSILAQLTELNY-NGVPELTERKDTFFAQQWTGVKSSAETYK 979
Query: 249 EKKIALNIRIKPLN 262
+A R++ +
Sbjct: 980 NTLLAELERLQKIE 993
>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium,
contractIle protein; HET: DR6; 3.00A {Gallus gallus}
SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A
Length = 182
Score = 35.7 bits (82), Expect = 0.007
Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 66 LTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDK 125
L A E K E EK+ L PL++ G S+ +LQ + +L I ++ ++
Sbjct: 20 AMLQLAVTEIEKEAAAKEVEKQNYLAEHSPPLSLPG-SMQELQELSKKLHAKIDSVDEER 78
Query: 126 YDLEERQKRQDYDLKELKER 145
YD E + ++ + +L++L ++
Sbjct: 79 YDTEVKLQKTNKELEDLSQK 98
Score = 32.6 bits (74), Expect = 0.093
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 230 LTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDK 289
L A E K E EK+ L PL++ G S+ +LQ + +L I ++ ++
Sbjct: 20 AMLQLAVTEIEKEAAAKEVEKQNYLAEHSPPLSLPG-SMQELQELSKKLHAKIDSVDEER 78
Query: 290 YDLEERQKRQDYD 302
YD E + ++ + +
Sbjct: 79 YDTEVKLQKTNKE 91
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 34.7 bits (79), Expect = 0.019
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 12/83 (14%)
Query: 8 EEERRQREVEE-KKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPGL 66
+ +R +E E +K R EE+R+RL+E + + M +E+ K + ++ E
Sbjct: 76 QADRLTQEPESIRKWR--EEQRKRLQELDAASKVMEQEWREKAKKDL-EEWNQRQSE--- 129
Query: 67 TLSTAQLERNKTKEQIEEEKKIA 89
Q+E+NK +I ++
Sbjct: 130 -----QVEKNKINNRIADKAFYQ 147
Score = 30.9 bits (69), Expect = 0.31
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 3 QRKKEEEERRQREVEEKKQRDLEE-KRQRLEEAEKKRQAMMAALKE 47
Q + ++E EK ++DLEE +++ E+ EK + A K
Sbjct: 99 QELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKA 144
Score = 29.4 bits (65), Expect = 0.96
Identities = 6/48 (12%), Positives = 20/48 (41%)
Query: 2 AQRKKEEEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQT 49
+ +++ + + +Q E+ ++ LEE +++ + K
Sbjct: 91 REEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINN 138
Score = 28.6 bits (63), Expect = 2.0
Identities = 15/84 (17%), Positives = 35/84 (41%), Gaps = 16/84 (19%)
Query: 170 VKEEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPG 229
+ +E R+ E++++ L+E + A K + +E+ K + ++ E
Sbjct: 80 LTQEPESIRKWREEQRKRLQEL----DAASKVME---QEWREKAKKDL-EEWNQRQSE-- 129
Query: 230 LTLSTAQLERNKTKEQIEEEKKIA 253
Q+E+NK +I ++
Sbjct: 130 ------QVEKNKINNRIADKAFYQ 147
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA,
ribosomal; 10.80A {Bos taurus}
Length = 537
Score = 34.1 bits (79), Expect = 0.053
Identities = 11/90 (12%), Positives = 33/90 (36%), Gaps = 1/90 (1%)
Query: 170 VKEEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPG 229
E E R REV + ++ + E+++ + E+ + + + + +
Sbjct: 257 EVESEPRAREVVDWRKYEQEQEKNK-EDLKLIEEKRKEHQEAHRKDREKYGTVHWKERSY 315
Query: 230 LTLSTAQLERNKTKEQIEEEKKIALNIRIK 259
+ + ++ ++ E L + +K
Sbjct: 316 IKYREKRQQQPLKPKEKLERDSNVLPVIVK 345
Score = 33.7 bits (78), Expect = 0.064
Identities = 11/88 (12%), Positives = 33/88 (37%), Gaps = 1/88 (1%)
Query: 8 EEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPGLT 67
E E R REV + ++ + E+++ + E+ + + + + + +
Sbjct: 259 ESEPRAREVVDWRKYEQEQEKNK-EDLKLIEEKRKEHQEAHRKDREKYGTVHWKERSYIK 317
Query: 68 LSTAQLERNKTKEQIEEEKKIALNIRIK 95
+ ++ ++ E L + +K
Sbjct: 318 YREKRQQQPLKPKEKLERDSNVLPVIVK 345
Score = 31.8 bits (73), Expect = 0.28
Identities = 11/82 (13%), Positives = 33/82 (40%)
Query: 18 EKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPGLTLSTAQLERNK 77
E + R++ + R+ +E EK ++ + +++ + ++ + ++ +
Sbjct: 261 EPRAREVVDWRKYEQEQEKNKEDLKLIEEKRKEHQEAHRKDREKYGTVHWKERSYIKYRE 320
Query: 78 TKEQIEEEKKIALNIRIKPLNV 99
++Q + K L L V
Sbjct: 321 KRQQQPLKPKEKLERDSNVLPV 342
Score = 31.8 bits (73), Expect = 0.28
Identities = 11/82 (13%), Positives = 33/82 (40%)
Query: 182 EKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPGLTLSTAQLERNK 241
E + R++ + R+ +E EK ++ + +++ + ++ + ++ +
Sbjct: 261 EPRAREVVDWRKYEQEQEKNKEDLKLIEEKRKEHQEAHRKDREKYGTVHWKERSYIKYRE 320
Query: 242 TKEQIEEEKKIALNIRIKPLNV 263
++Q + K L L V
Sbjct: 321 KRQQQPLKPKEKLERDSNVLPV 342
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 32.9 bits (75), Expect = 0.13
Identities = 23/200 (11%), Positives = 66/200 (33%), Gaps = 28/200 (14%)
Query: 8 EEERRQREVEEKKQRDLEEKRQR-------LEEAEKKRQAMMAALKEQTNKSKGPNFTIQ 60
+ + + +K+ LEE++ L + E + + + +L ++ + N
Sbjct: 1899 DFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQAN 1958
Query: 61 RREPGLTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVK 120
++ + E + + + + L+V I + KA E
Sbjct: 1959 QKLKQMVQDQQAAEIKQKDARELQVQ----------LDVRNKEIAVQKVKAYADLEKAEP 2008
Query: 121 LETDKYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLDPEALTGKYPVKEEERRQREV 180
+ ++E+ + + + E AL+K + +Y E
Sbjct: 2009 TGPLREEVEQLENAANELKLKQDEIVATI---TALEKSIA--TYKEEYATLIRET----- 2058
Query: 181 EEKKQRDLEEKRQRLEEAEK 200
E+ + + + + +++ +
Sbjct: 2059 -EQIKTESSKVKNKVDRSIA 2077
Score = 31.4 bits (71), Expect = 0.40
Identities = 23/183 (12%), Positives = 61/183 (33%), Gaps = 25/183 (13%)
Query: 1 MAQRKKEEEERRQREVE-------------EKKQRDLEEKRQRLEEAEKKRQAMMAALKE 47
+ K+++ E Q + + Q L +K + L+ ++ + + +
Sbjct: 1907 LINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQ 1966
Query: 48 QTNKSKGPNFTIQRREPGLTLSTAQL-------ERNKTKEQIEEEKKIALNIRIKPLNVE 100
++ + + L + ++ + K + + + N
Sbjct: 1967 DQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANEL 2026
Query: 101 GWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDLKELKERQKQQL-RHKALKKGL 159
++ A T L ++I + ++Y R+ +K + K ++ R AL L
Sbjct: 2027 KLKQDEIVATITALEKSIATYK-EEYATLIRETE---QIKTESSKVKNKVDRSIALLDNL 2082
Query: 160 DPE 162
+ E
Sbjct: 2083 NSE 2085
Score = 27.2 bits (60), Expect = 8.9
Identities = 10/80 (12%), Positives = 26/80 (32%), Gaps = 2/80 (2%)
Query: 185 QRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPGLTLSTAQLERNKTKE 244
Q L +K + L+ ++ + + + ++ + + + L E K
Sbjct: 1940 QVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQ--VQLDVRNKEIAVQKV 1997
Query: 245 QIEEEKKIALNIRIKPLNVE 264
+ + + A VE
Sbjct: 1998 KAYADLEKAEPTGPLREEVE 2017
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta
homodimer, ligase; HET: FYA; 2.50A {Thermus
thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A
1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A*
2amc_A*
Length = 350
Score = 32.6 bits (75), Expect = 0.13
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 11/72 (15%)
Query: 138 DLKELKERQKQQLRHKAL-KKGLDPEALTGKYPVKEEERRQR-----EVEEKKQRDLEEK 191
DL+EL + L+ + L KKGL + + G + EERR+R ++ + LE +
Sbjct: 14 DLEEL-----KALKARYLGKKGLLTQEMKGLSALPLEERRKRGQELNAIKAALEAALEAR 68
Query: 192 RQRLEEAEKKRQ 203
+ LEEA K
Sbjct: 69 EKALEEAALKEA 80
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.7 bits (74), Expect = 0.17
Identities = 22/159 (13%), Positives = 49/159 (30%), Gaps = 45/159 (28%)
Query: 38 RQAMMAALKEQTNKSKGPNFTIQRREPGLTLSTAQLER--NKTKEQIEEEKKIALNIRIK 95
+++ E P +I LT Q++ NKT + K++ +++
Sbjct: 320 PPSILEDSLENNEGVPSPMLSIS----NLTQ--EQVQDYVNKTNSHLPAGKQVEISLVNG 373
Query: 96 PLN--VEG---------WSIHKLQAKATELWETIVKLETDKYDLEERQKR---------- 134
N V G ++ K +A + L+ + ER+ +
Sbjct: 374 AKNLVVSGPPQSLYGLNLTLRKAKAPS--------GLDQSRIPFSERKLKFSNRFLPVAS 425
Query: 135 ---QDYDLKELKERQKQQLRHKALKKGLDPEALTGKYPV 170
L + + L + + + + + PV
Sbjct: 426 PFHSHL-LVPASDLINKDLVKNNVS--FNAKDI--QIPV 459
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation,
tRNA-binding, DNA-binding domain, four-helix
aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP;
3.02A {Escherichia coli}
Length = 327
Score = 32.1 bits (74), Expect = 0.18
Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 11/72 (15%)
Query: 138 DLKELKERQKQQLRHKAL-KKGLDPEALTGKYPVKEEERRQR-----EVEEKKQRDLEEK 191
D+ L +R + L KKG +T + EER E +E+ Q+ L +
Sbjct: 20 DVAAL-----DNVRVEYLGKKGHLTLQMTTLRELPPEERPAAGAVINEAKEQVQQALNAR 74
Query: 192 RQRLEEAEKKRQ 203
+ LE A +
Sbjct: 75 KAELESAALNAR 86
>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA;
rossmann fold, FAD-binding domain, dinucleotide-binding
motif; HET: FAD; 3.20A {Chlorobium tepidum}
Length = 641
Score = 32.0 bits (74), Expect = 0.27
Identities = 16/143 (11%), Positives = 44/143 (30%), Gaps = 31/143 (21%)
Query: 62 REPGLTLSTAQLER-NKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVK 120
+ L +S+ L R ++++ ++ ++ P ++ +K
Sbjct: 469 YDCNL-VSSDDLHRTESIIKRVQHCLEVMKTAKVTP--------AEINTLLMNKGLQELK 519
Query: 121 LETDKYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLDPEALTGKYPVKEEERRQREV 180
KR L+++ E L + + Q ++
Sbjct: 520 ---TPARALSLIKRPGISLQDILE------------HSLSVRSAAEELCNDPRVAEQVQI 564
Query: 181 EEK------KQRDLEEKRQRLEE 197
E K +++ + ++ RL+
Sbjct: 565 EIKYEGYIKREQLVADRIARLDS 587
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A
{Homo sapiens}
Length = 522
Score = 31.2 bits (71), Expect = 0.43
Identities = 11/93 (11%), Positives = 29/93 (31%)
Query: 60 QRREPGLTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIV 119
+ R +N + I E+ K + E +
Sbjct: 42 EWRRCRFRADNLNKLKNLCSKTIGEKMKKKEPVGDDESVPENVLSFDDLTADALANLKVS 101
Query: 120 KLETDKYDLEERQKRQDYDLKELKERQKQQLRH 152
+++ + ++E + D + +L+ + + LR
Sbjct: 102 QIKKVRLLIDEAILKCDAERIKLEAERFENLRE 134
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 31.3 bits (70), Expect = 0.43
Identities = 22/122 (18%), Positives = 59/122 (48%), Gaps = 5/122 (4%)
Query: 100 EGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDLKELKERQKQQLRHKALKKGL 159
E + KL+ + + K + + E ++ +L++ +E +Q + +K
Sbjct: 296 ELYRRCKLEEMGFKDTDPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEK-- 353
Query: 160 DPEALTGKYPVKEEERRQREVEEKKQRDLEEKRQRLEE---AEKKRQAMMAALKEQTNKS 216
+ E + + E+ R +++ + +++ LE+K++ L++ A K+R+ L+ Q +++
Sbjct: 354 EAELKEAEKELHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQRKTAAELLQSQGSQA 413
Query: 217 KG 218
G
Sbjct: 414 GG 415
Score = 27.4 bits (60), Expect = 7.1
Identities = 12/55 (21%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 3 QRKKEEEERRQREVEEKKQRDLEEKRQRLEE---AEKKRQAMMAALKEQTNKSKG 54
+++ E+ R +++ + +++ LE+K++ L++ A K+R+ L+ Q +++ G
Sbjct: 361 EKELHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQRKTAAELLQSQGSQAGG 415
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol
3-phosphate binding, membrane protein; HET: ITP; 2.20A
{Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A*
1hyj_A
Length = 125
Score = 29.2 bits (65), Expect = 0.80
Identities = 10/58 (17%), Positives = 27/58 (46%)
Query: 7 EEEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREP 64
++E R E K + ++E+ + ++ E ++K AA++E +++ +
Sbjct: 3 QDERRALLERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQIKHTQALN 60
Score = 28.8 bits (64), Expect = 0.99
Identities = 10/58 (17%), Positives = 27/58 (46%)
Query: 171 KEEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREP 228
++E R E K + ++E+ + ++ E ++K AA++E +++ +
Sbjct: 3 QDERRALLERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQIKHTQALN 60
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation,
tRNA-binding, DNA-binding domain, four-helix
acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A
{Homo sapiens}
Length = 508
Score = 30.2 bits (68), Expect = 0.99
Identities = 16/132 (12%), Positives = 45/132 (34%), Gaps = 4/132 (3%)
Query: 154 ALKKGLDPEALTGKYPVKEEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQT 213
+ K + E+ QR ++ + E+ ++ +KR+ + +
Sbjct: 114 RVDKSAADGPRVFRVVDSMEDEVQRRLQLVRGGQAEKLGEKERSELRKRKLLAEVTLKTY 173
Query: 214 NKSKGPNFTIQRREPGLTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQA 273
SKG F+ + LS + +++ + N + + +H L
Sbjct: 174 WVSKGSAFSTSISKQETELSPEMISSGSWRDRPFKP----YNFLAHGVLPDSGHLHPLLK 229
Query: 274 KATELWETIVKL 285
++ + +++
Sbjct: 230 VRSQFRQIFLEM 241
Score = 28.7 bits (64), Expect = 3.0
Identities = 15/116 (12%), Positives = 42/116 (36%), Gaps = 4/116 (3%)
Query: 6 KEEEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPG 65
E+ QR ++ + E+ ++ +KR+ + + SKG F+ +
Sbjct: 130 DSMEDEVQRRLQLVRGGQAEKLGEKERSELRKRKLLAEVTLKTYWVSKGSAFSTSISKQE 189
Query: 66 LTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKL 121
LS + +++ + N + + +H L ++ + +++
Sbjct: 190 TELSPEMISSGSWRDRPFKP----YNFLAHGVLPDSGHLHPLLKVRSQFRQIFLEM 241
>4ew8_A Sensor protein DIVL; signal transduction, two-component
regulatory system, hiska GHKL domain, structural
genomics; 2.50A {Caulobacter crescentus}
Length = 268
Score = 28.7 bits (65), Expect = 2.4
Identities = 6/42 (14%), Positives = 13/42 (30%)
Query: 2 AQRKKEEEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMA 43
+ Q L ++ L EAE+ ++ +
Sbjct: 4 SHHHHHHSSGLVPRGSHMLQSALADRSAALAEAERLKRDFVG 45
>3ab3_B RHO guanine nucleotide exchange factor 1; signal transduction,
protein complex, GTP-binding, membrane, transducer,
lipoprotein, nucleotide-binding; HET: GDP; 2.40A {Homo
sapiens} PDB: 1shz_C*
Length = 246
Score = 27.9 bits (61), Expect = 3.5
Identities = 18/93 (19%), Positives = 37/93 (39%), Gaps = 2/93 (2%)
Query: 119 VKLETDKYDLEERQKRQDYDLKELKE--RQKQQLRHKALKKGLDPEALTGKYPVKEEERR 176
+ + + ++E + Q + E R K+ + ++ L E R
Sbjct: 143 ISEDVQRRFVQEVVQSQQVAVGRQLEDFRSKRLMGMTPWEQELAQLEAWVGRDRASYEAR 202
Query: 177 QREVEEKKQRDLEEKRQRLEEAEKKRQAMMAAL 209
+R V E+ LEE + + E+K A++ A+
Sbjct: 203 ERHVAERLLMHLEEMQHTISTDEEKSAAVVNAI 235
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Length = 260
Score = 28.1 bits (62), Expect = 3.8
Identities = 13/76 (17%), Positives = 24/76 (31%)
Query: 124 DKYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLDPEALTGKYPVKEEERRQREVEEK 183
+ Q Q +L + E + GL K + R +E ++
Sbjct: 183 NNRAEGSNQDDQVKELMDCIEDLLMEKNGDHYTNGLYSLIQRSKCGPVGSDERVKEFKQS 242
Query: 184 KQRDLEEKRQRLEEAE 199
+ +E +R AE
Sbjct: 243 LIKYMETQRSYTALAE 258
Score = 26.9 bits (59), Expect = 7.4
Identities = 6/35 (17%), Positives = 15/35 (42%)
Query: 1 MAQRKKEEEERRQREVEEKKQRDLEEKRQRLEEAE 35
++ + R +E ++ + +E +R AE
Sbjct: 224 RSKCGPVGSDERVKEFKQSLIKYMETQRSYTALAE 258
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase,
structural genomics, structural genomics consortium,
SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Length = 309
Score = 28.0 bits (63), Expect = 3.8
Identities = 5/33 (15%), Positives = 8/33 (24%), Gaps = 1/33 (3%)
Query: 127 DLEERQKRQDYDLKELKERQKQQLRHKA-LKKG 158
+ L L Q++ L H
Sbjct: 195 EEPGAGTPSPVRLHALAGFQQRALCHALTFPSL 227
>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA;
tRNA modification, FAD binding domain, structural
genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A
Length = 651
Score = 28.2 bits (64), Expect = 3.9
Identities = 27/143 (18%), Positives = 49/143 (34%), Gaps = 35/143 (24%)
Query: 62 REPGLTLSTAQLER-NKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVK 120
RE GL + + R N+ E IE E++ + + P + A+ +
Sbjct: 475 RELGL-VDDERWARFNEKLENIERERQRLKSTWVTPS-------AEAAAEVNAHLTAPLS 526
Query: 121 LETDKYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLDPEALTGKYPVKEEERRQREV 180
+ E+ +R + ++L L P E+ Q E+
Sbjct: 527 ---REASGEDLLRRPEMTYEKLTT--------------LTPF---APALTDEQAAEQVEI 566
Query: 181 EEK------KQRDLEEKRQRLEE 197
+ K +Q+D EK+ R E
Sbjct: 567 QVKYEGYIARQQDEIEKQLRNEN 589
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase,
AARS, serrs, translation, ATP-binding,
nucleotide-binding, structural genomics; HET: ATP; 1.95A
{Trypanosoma brucei} PDB: 3lsq_A*
Length = 484
Score = 28.1 bits (63), Expect = 4.4
Identities = 11/96 (11%), Positives = 34/96 (35%), Gaps = 3/96 (3%)
Query: 60 QRREPGLTLSTAQLERNKTKEQIEEEKK---IALNIRIKPLNVEGWSIHKLQAKATELWE 116
+ R ++ N + + +KK + P V+ +
Sbjct: 45 KWRRTQFLTEASKKLINICSKAVGAKKKAKEADGDTSEIPPQVKEAYENGTLKGEQVEQL 104
Query: 117 TIVKLETDKYDLEERQKRQDYDLKELKERQKQQLRH 152
+++L+ DL ++ + ++L+E + + + +
Sbjct: 105 CVLQLKQLSKDLSDQVAGLAKEAQQLEEERDKLMLN 140
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold,
coiled coil, riken structural genomics/proteomics
initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus}
SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A*
1iyw_A
Length = 862
Score = 27.9 bits (63), Expect = 4.9
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 15/74 (20%)
Query: 127 DLEERQKRQDYDLKELKERQKQQLRHKALKKGLDPEALTGKYP--VKEEERRQREVEEKK 184
D+EE ++RQ+ K LKE R ++ L K P V E E +
Sbjct: 797 DVEEWRRRQE---KRLKELLALAER---SQRKLASPGFREKAPKEVVEAEE-------AR 843
Query: 185 QRDLEEKRQRLEEA 198
++ E+ +R+ EA
Sbjct: 844 LKENLEQAERIREA 857
>1yf2_A Type I restriction-modification enzyme, S subunit; structura
genomics, PSI, protein structure initiative; 2.40A
{Methanocaldococcus jannaschii} SCOP: d.287.1.2
d.287.1.2
Length = 425
Score = 27.7 bits (62), Expect = 5.1
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 138 DLKELKERQKQQLRHKALKKGLDPEALTGKYPVK 171
ELK+++K++L + +KK + LTGK VK
Sbjct: 393 KSIELKKQKKEKL--QRMKKKIMELLLTGKVRVK 424
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF
domain, transcription, RNA binding protein; 2.27A
{Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6
a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Length = 785
Score = 27.6 bits (62), Expect = 6.3
Identities = 12/27 (44%), Positives = 21/27 (77%)
Query: 22 RDLEEKRQRLEEAEKKRQAMMAALKEQ 48
R LEE+ + L E E++R A++A+++EQ
Sbjct: 58 RMLEERLRYLRELEERRGAILASIEEQ 84
Score = 27.6 bits (62), Expect = 6.3
Identities = 12/27 (44%), Positives = 21/27 (77%)
Query: 186 RDLEEKRQRLEEAEKKRQAMMAALKEQ 212
R LEE+ + L E E++R A++A+++EQ
Sbjct: 58 RMLEERLRYLRELEERRGAILASIEEQ 84
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 27.5 bits (60), Expect = 7.0
Identities = 25/187 (13%), Positives = 62/187 (33%), Gaps = 3/187 (1%)
Query: 69 STAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDL 128
+ + T ++ + + +V+ S+ + + + + V+L +
Sbjct: 608 MSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQRSVQLA-IEITT 666
Query: 129 EERQKRQDYDLKELKERQKQQLRHKALKKGLDPEALTGKYPVKEEERRQREVEEKKQRDL 188
++ ++ + L++ + +L + + + E + E E + +
Sbjct: 667 NSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEA 726
Query: 189 EEK--RQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPGLTLSTAQLERNKTKEQI 246
E + R+E QA + A + RE L + AQLE +K Q
Sbjct: 727 ESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLELEVSKAQQ 786
Query: 247 EEEKKIA 253
+
Sbjct: 787 LANVEAK 793
Score = 27.1 bits (59), Expect = 9.2
Identities = 16/91 (17%), Positives = 34/91 (37%), Gaps = 6/91 (6%)
Query: 1 MAQRKKEEEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQ 60
+ + + E+ R++ E +E EAE + +A + ++K
Sbjct: 693 ILDQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAK------L 746
Query: 61 RREPGLTLSTAQLERNKTKEQIEEEKKIALN 91
+ + + A+LER K ++E A
Sbjct: 747 KAQALAIETEAELERVKKVREMELIYARAQL 777
>1ois_A DNA topoisomerase I; DNA-binding protein; HET: DNA; 1.90A
{Saccharomyces cerevisiae} SCOP: e.15.1.1
Length = 223
Score = 26.8 bits (59), Expect = 8.9
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 13 QREVEEKKQRDLEEKRQRLEEAEKKRQAMMAAL 45
Q + E+KKQ +EK+Q E EK +
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEEDYKFCE 134
Score = 26.8 bits (59), Expect = 8.9
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 177 QREVEEKKQRDLEEKRQRLEEAEKKRQAMMAAL 209
Q + E+KKQ +EK+Q E EK +
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEEDYKFCE 134
>3plw_A Recombination enhancement function protein; HNH nuclease, DNAse,
hydrolase; 1.40A {Enterobacteria phage P1}
Length = 186
Score = 26.4 bits (57), Expect = 9.3
Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 1/90 (1%)
Query: 1 MAQRKKEEEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQ 60
++K E+ + Q+ E+ EK E + Q M L + K K +
Sbjct: 3 TIEQKIEQCRKWQKAARERAIARQREKLADPVWRESQYQKMRDTLDRRIAKQKERPPASK 62
Query: 61 RREPGLTLSTAQLE-RNKTKEQIEEEKKIA 89
R+ + + + L+ R T E+ +
Sbjct: 63 TRKSAVKIKSRGLKGRTPTAEERRIANALG 92
>1iap_A Guanine nucleotide exchange factor P115rhogef; RGS, RGRGS,
signaling protein; 1.90A {Homo sapiens} SCOP: a.91.1.1
Length = 211
Score = 26.7 bits (58), Expect = 9.7
Identities = 18/93 (19%), Positives = 37/93 (39%), Gaps = 2/93 (2%)
Query: 119 VKLETDKYDLEERQKRQDYDLKELKE--RQKQQLRHKALKKGLDPEALTGKYPVKEEERR 176
+ + + ++E + Q + E R K+ + ++ L E R
Sbjct: 89 ISEDVQRRFVQEVVQSQQVAVGRQLEDFRSKRLMGMTPWEQELAQLEAWVGRDRASYEAR 148
Query: 177 QREVEEKKQRDLEEKRQRLEEAEKKRQAMMAAL 209
+R V E+ LEE + + E+K A++ A+
Sbjct: 149 ERHVAERLLMHLEEMQHTISTDEEKSAAVVNAI 181
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.307 0.125 0.329
Gapped
Lambda K H
0.267 0.0545 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,426,752
Number of extensions: 270119
Number of successful extensions: 2331
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1841
Number of HSP's successfully gapped: 495
Length of query: 302
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 209
Effective length of database: 4,105,140
Effective search space: 857974260
Effective search space used: 857974260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 57 (26.2 bits)