RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9780
         (302 letters)



>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
           DNA-binding fragment {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 223

 Score = 26.2 bits (58), Expect = 4.0
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 13  QREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPGL 66
           Q + E+KKQ   +EK+Q   E EK  +       +   + +  NF ++   P L
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEEDYKFCELDG-RREQVGNFKVEP--PDL 152



 Score = 26.2 bits (58), Expect = 4.0
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 177 QREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPGL 230
           Q + E+KKQ   +EK+Q   E EK  +       +   + +  NF ++   P L
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEEDYKFCELDG-RREQVGNFKVEP--PDL 152


>d1yf2a2 d.287.1.2 (A:221-425) Bipartite methylase S protein MJ0130
           {Methanocaldococcus jannaschii [TaxId: 2190]}
          Length = 205

 Score = 25.5 bits (54), Expect = 8.4
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)

Query: 138 DLKELKERQKQQLRHKALKKGLDPEALTGKYPVK 171
              ELK+++K++L  + +KK +    LTGK  VK
Sbjct: 173 KSIELKKQKKEKL--QRMKKKIMELLLTGKVRVK 204


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.307    0.125    0.329 

Gapped
Lambda     K      H
   0.267   0.0435    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,063,565
Number of extensions: 52822
Number of successful extensions: 517
Number of sequences better than 10.0: 1
Number of HSP's gapped: 444
Number of HSP's successfully gapped: 139
Length of query: 302
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 217
Effective length of database: 1,240,546
Effective search space: 269198482
Effective search space used: 269198482
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 53 (24.9 bits)