BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9781
(288 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KYC|B Chain B, Human Sumo E1 Complex With A Sumo1-Amp Mimic
Length = 660
Score = 220 bits (560), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 112/220 (50%), Positives = 133/220 (60%), Gaps = 19/220 (8%)
Query: 1 MCLASEVPLIESGTAGYEGQVELIKKGETKCYECDPKPAAKTYPGCTIRNTPSEPIHCIV 60
MCLA++VPLIESGTAGY GQV IKKG T+CYEC PKP +T+PGCTIRNTPSEPIHCIV
Sbjct: 148 MCLAADVPLIESGTAGYLGQVTTIKKGVTECYECHPKPTQRTFPGCTIRNTPSEPIHCIV 207
Query: 61 WAKHLFNLEGSAPGLLVLAQGQLFGEIDADEEVSPDTEDPEXX-XXXXXXXXXXXXXXXX 119
WAK+LFN QLFGE DAD+EVSPD DPE
Sbjct: 208 WAKYLFN--------------QLFGEEDADQEVSPDRADPEAAWEPTEAEARARACNEDG 253
Query: 120 DVVRTSTRAWASACGYDPRKLFAKFFDADIRYLISMSDLWKTRKAPQPLVWDTLS----D 175
D+ R ST+ WA + GYDP KLF K F DIRYL++M LW+ RK P PL W + +
Sbjct: 254 DIKRISTKEWAKSTGYDPVKLFTKLFKDDIRYLLTMDKLWRKRKPPVPLDWAEVQSQGEE 313
Query: 176 AVAGSSKETDGGGLKDQRVWSVAECARVFERSVRELKTKF 215
A + GLKDQ+V V AR+F +S+ L+
Sbjct: 314 TNASDQQNEPQLGLKDQQVLDVKSYARLFSKSIETLRVHL 353
Score = 67.4 bits (163), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 41/59 (69%)
Query: 230 RLTVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRVSKFSALLLCV 288
+ VA+ S L F P ANIVA+H SI++ D+ V +F+QF LVMNALDNR ++ +C+
Sbjct: 92 KAQVAKESVLQFYPKANIVAYHDSIMNPDYNVEFFRQFILVMNALDNRAARNHVNRMCL 150
>pdb|3KYD|B Chain B, Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mimic
Length = 551
Score = 219 bits (559), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 112/220 (50%), Positives = 133/220 (60%), Gaps = 19/220 (8%)
Query: 1 MCLASEVPLIESGTAGYEGQVELIKKGETKCYECDPKPAAKTYPGCTIRNTPSEPIHCIV 60
MCLA++VPLIESGTAGY GQV IKKG T+CYEC PKP +T+PGCTIRNTPSEPIHCIV
Sbjct: 130 MCLAADVPLIESGTAGYLGQVTTIKKGVTECYECHPKPTQRTFPGCTIRNTPSEPIHCIV 189
Query: 61 WAKHLFNLEGSAPGLLVLAQGQLFGEIDADEEVSPDTEDPEXX-XXXXXXXXXXXXXXXX 119
WAK+LFN QLFGE DAD+EVSPD DPE
Sbjct: 190 WAKYLFN--------------QLFGEEDADQEVSPDRADPEAAWEPTEAEARARACNEDG 235
Query: 120 DVVRTSTRAWASACGYDPRKLFAKFFDADIRYLISMSDLWKTRKAPQPLVWDTLS----D 175
D+ R ST+ WA + GYDP KLF K F DIRYL++M LW+ RK P PL W + +
Sbjct: 236 DIKRISTKEWAKSTGYDPVKLFTKLFKDDIRYLLTMDKLWRKRKPPVPLDWAEVQSQGEE 295
Query: 176 AVAGSSKETDGGGLKDQRVWSVAECARVFERSVRELKTKF 215
A + GLKDQ+V V AR+F +S+ L+
Sbjct: 296 TNASDQQNEPQLGLKDQQVLDVKSYARLFSKSIETLRVHL 335
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 40/56 (71%)
Query: 233 VARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRVSKFSALLLCV 288
VA+ S L F P ANIVA+H SI++ D+ V +F+QF LVMNALDNR ++ +C+
Sbjct: 77 VAKESVLQFYPKANIVAYHDSIMNPDYNVEFFRQFILVMNALDNRAARNHVNRMCL 132
>pdb|1Y8Q|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8Q|D Chain D, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8R|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|1Y8R|E Chain E, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
Length = 640
Score = 218 bits (554), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 113/224 (50%), Positives = 133/224 (59%), Gaps = 27/224 (12%)
Query: 1 MCLASEVPLIESGTAGYEGQVELIKKGETKCYECDPKPAAKTYPGCTIRNTPSEPIHCIV 60
MCLA++VPLIESGTAGY GQV IKKG T+CYEC PKP +T+PG TIRNTPSEPIHCIV
Sbjct: 128 MCLAADVPLIESGTAGYLGQVTTIKKGVTECYECHPKPTQRTFPGATIRNTPSEPIHCIV 187
Query: 61 WAKHLFNLEGSAPGLLVLAQGQLFGEIDADEEVSPDTEDPEXX-XXXXXXXXXXXXXXXX 119
WAK+LFN QLFGE DAD+EVSPD DPE
Sbjct: 188 WAKYLFN--------------QLFGEEDADQEVSPDRADPEAAWEPTEAEARARASNEDG 233
Query: 120 DVVRTSTRAWASACGYDPRKLFAKFFDADIRYLISMSDLWKTRKAPQPLVWDTLSDAVAG 179
D+ R ST+ WA + GYDP KLF K F DIRYL++M LW+ RK P PL W V
Sbjct: 234 DIKRISTKEWAKSTGYDPVKLFTKLFKDDIRYLLTMDKLWRKRKPPVPLDWAE----VQS 289
Query: 180 SSKETDGG--------GLKDQRVWSVAECARVFERSVRELKTKF 215
+ET+ GLKDQ+V V AR+F +S+ L+
Sbjct: 290 QGEETNASDQQNEPQLGLKDQQVLDVKSYARLFSKSIETLRVHL 333
Score = 67.4 bits (163), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 41/59 (69%)
Query: 230 RLTVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRVSKFSALLLCV 288
+ VA+ S L F P ANIVA+H SI++ D+ V +F+QF LVMNALDNR ++ +C+
Sbjct: 72 KAQVAKESVLQFYPKANIVAYHDSIMNPDYNVEFFRQFILVMNALDNRAARNHVNRMCL 130
>pdb|2PX9|A Chain A, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
Length = 217
Score = 155 bits (391), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 82/177 (46%), Positives = 100/177 (56%), Gaps = 19/177 (10%)
Query: 41 KTYPGCTIRNTPSEPIHCIVWAKHLFNLEGSAPGLLVLAQGQLFGEIDADEEVSPDTEDP 100
+T+PGCTIRNTPSEPIHCIVWAK+LFN QLFGE DAD+EVSPD DP
Sbjct: 3 RTFPGCTIRNTPSEPIHCIVWAKYLFN--------------QLFGEEDADQEVSPDRADP 48
Query: 101 EXX-XXXXXXXXXXXXXXXXDVVRTSTRAWASACGYDPRKLFAKFFDADIRYLISMSDLW 159
E D+ R ST+ WA + GYDP KLF K F DIRYL++M LW
Sbjct: 49 EAAWEPTEAEARARASNEDGDIKRISTKEWAKSTGYDPVKLFTKLFKDDIRYLLTMDKLW 108
Query: 160 KTRKAPQPLVWDTLS----DAVAGSSKETDGGGLKDQRVWSVAECARVFERSVRELK 212
+ RK P PL W + + A + GLKDQ+V V AR+F +S+ L+
Sbjct: 109 RKRKPPVPLDWAEVQSQGEETNASDQQNEPQLGLKDQQVLDVKSYARLFSKSIETLR 165
>pdb|4II2|A Chain A, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
pdb|4II3|A Chain A, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme
1 (uba1) In Complex With Ubiquitin And Atp/mg
pdb|4II3|C Chain C, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme
1 (uba1) In Complex With Ubiquitin And Atp/mg
Length = 1001
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 38/65 (58%)
Query: 2 CLASEVPLIESGTAGYEGQVELIKKGETKCYECDPKPAAKTYPGCTIRNTPSEPIHCIVW 61
C+ E PL+ESGT G +G +++ T+ Y P K++P CT++N P+ H I W
Sbjct: 538 CVFFEKPLLESGTLGTKGNTQVVVPHLTESYGSSQDPPEKSFPICTLKNFPNRIEHTIAW 597
Query: 62 AKHLF 66
A+ LF
Sbjct: 598 ARDLF 602
>pdb|3CMM|A Chain A, Crystal Structure Of The Uba1-Ubiquitin Complex
pdb|3CMM|C Chain C, Crystal Structure Of The Uba1-Ubiquitin Complex
Length = 1015
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 37/65 (56%)
Query: 2 CLASEVPLIESGTAGYEGQVELIKKGETKCYECDPKPAAKTYPGCTIRNTPSEPIHCIVW 61
C+ PL+ESGT G +G ++I T+ Y P K+ P CT+R+ P++ H I W
Sbjct: 547 CVFYRKPLLESGTLGTKGNTQVIIPRLTESYSSSRDPPEKSIPLCTLRSFPNKIDHTIAW 606
Query: 62 AKHLF 66
AK LF
Sbjct: 607 AKSLF 611
>pdb|1TT5|B Chain B, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
pdb|1TT5|D Chain D, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
Length = 434
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 4 ASEVPLIESGTAGYEGQVELIKKGETKCYEC--DPKPAAKTYPGCTIRNTPSEPIHCIVW 61
+S VPLI+ GT G++G +I G T C EC + P +P CTI + P P HCI +
Sbjct: 164 SSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEY 223
Query: 62 AKHL 65
+ L
Sbjct: 224 VRML 227
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 15/67 (22%)
Query: 216 DVSRPGLDKS--FYGDRLTVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNA 273
D+ RP + + F DR+ P+ N+V H I DF +++QF +++
Sbjct: 90 DIGRPKAEVAAEFLNDRV-----------PNCNVVPHFNKI--QDFNDTFYRQFHIIVCG 136
Query: 274 LDNRVSK 280
LD+ +++
Sbjct: 137 LDSIIAR 143
>pdb|1YOV|B Chain B, Insights Into The Ubiquitin Transfer Cascade From The
Refined Structure Of The Activating Enzyme For Nedd8
pdb|1YOV|D Chain D, Insights Into The Ubiquitin Transfer Cascade From The
Refined Structure Of The Activating Enzyme For Nedd8
Length = 444
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 4 ASEVPLIESGTAGYEGQVELIKKGETKCYEC--DPKPAAKTYPGCTIRNTPSEPIHCIVW 61
+S VPLI+ GT G++G +I G T C EC + P +P CTI + P P HCI +
Sbjct: 174 SSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEY 233
Query: 62 AKHL 65
+ L
Sbjct: 234 VRML 237
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 15/67 (22%)
Query: 216 DVSRPGLDKS--FYGDRLTVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNA 273
D+ RP + + F DR+ P+ N+V H I DF +++QF +++
Sbjct: 100 DIGRPKAEVAAEFLNDRV-----------PNCNVVPHFNKI--QDFNDTFYRQFHIIVCG 146
Query: 274 LDNRVSK 280
LD+ +++
Sbjct: 147 LDSIIAR 153
>pdb|3GZN|B Chain B, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
pdb|3GZN|D Chain D, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
Length = 463
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 4 ASEVPLIESGTAGYEGQVELIKKGETKCYEC--DPKPAAKTYPGCTIRNTPSEPIHCIVW 61
+S VPLI+ GT G++G +I G T C EC + P +P CTI + P P HCI +
Sbjct: 193 SSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEY 252
Query: 62 AKHL 65
+ L
Sbjct: 253 VRML 256
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 15/67 (22%)
Query: 216 DVSRPGLDKS--FYGDRLTVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNA 273
D+ RP + + F DR+ P+ N+V H I DF +++QF +++
Sbjct: 119 DIGRPKAEVAAEFLNDRV-----------PNCNVVPHFNKI--QDFNDTFYRQFHIIVCG 165
Query: 274 LDNRVSK 280
LD+ +++
Sbjct: 166 LDSIIAR 172
>pdb|2NVU|B Chain B, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 805
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 48/100 (48%), Gaps = 18/100 (18%)
Query: 4 ASEVPLIESGTAGYEGQVELIKKGETKCYEC--DPKPAAKTYPGCTIRNTPSEPIHCIVW 61
+S VPLI+ GT G++G +I G T C EC + P +P CTI + P P HCI +
Sbjct: 535 SSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEY 594
Query: 62 AKHLFNLEGSAPGLLVLAQGQLFGEIDADEEVSPDTEDPE 101
+ +L + Q FG E V D +DPE
Sbjct: 595 VR-----------MLQWPKEQPFG-----EGVPLDGDDPE 618
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 15/67 (22%)
Query: 216 DVSRPGLDKS--FYGDRLTVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNA 273
D+ RP + + F DR+ P+ N+V H I DF +++QF +++
Sbjct: 461 DIGRPKAEVAAEFLNDRV-----------PNCNVVPHFNKI--QDFNDTFYRQFHIIVCG 507
Query: 274 LDNRVSK 280
LD+ +++
Sbjct: 508 LDSIIAR 514
>pdb|3DBR|B Chain B, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|D Chain D, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|F Chain F, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|H Chain H, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
Length = 434
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 4 ASEVPLIESGTAGYEGQVELIKKGETKCYEC--DPKPAAKTYPGCTIRNTPSEPIHCIVW 61
+S VPLI+ GT G++G ++I G T C EC + P +P TI + P P HCI +
Sbjct: 164 SSIVPLIDGGTEGFKGNAQVILPGMTACIECTLELYPPQVNFPMATIASMPRLPEHCIEY 223
Query: 62 AKHL 65
+ L
Sbjct: 224 VRML 227
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 15/67 (22%)
Query: 216 DVSRPGLDKS--FYGDRLTVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNA 273
D+ RP + + F DR+ P+ N+V H I DF +++QF +++
Sbjct: 90 DIGRPKAEVAAEFLNDRV-----------PNCNVVPHFNKI--QDFNDTFYRQFHIIVCG 136
Query: 274 LDNRVSK 280
LD+ +++
Sbjct: 137 LDSIIAR 143
>pdb|3DBL|B Chain B, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|D Chain D, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|F Chain F, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|H Chain H, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
Length = 434
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 4 ASEVPLIESGTAGYEGQVELIKKGETKCYEC--DPKPAAKTYPGCTIRNTPSEPIHCIVW 61
+S VPLI+ GT G++G +I G T C EC + P +P TI + P P HCI +
Sbjct: 164 SSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMATIASMPRLPEHCIEY 223
Query: 62 AKHL 65
+ L
Sbjct: 224 VRML 227
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 15/67 (22%)
Query: 216 DVSRPGLDKS--FYGDRLTVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNA 273
D+ RP + + F DR+ P+ N+V H I DF +++QF +++
Sbjct: 90 DIGRPKAEVAAEFLNDRV-----------PNCNVVPHFNKI--QDFNDTFYRQFHIIVCG 136
Query: 274 LDNRVSK 280
LD+ +++
Sbjct: 137 LDSIIAR 143
>pdb|1R4M|B Chain B, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|D Chain D, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|F Chain F, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|H Chain H, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4N|B Chain B, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|D Chain D, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|F Chain F, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|H Chain H, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
Length = 431
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 4 ASEVPLIESGTAGYEGQVELIKKGETKCYEC--DPKPAAKTYPGCTIRNTPSEPIHCIVW 61
+S VPLI+ GT G++G +I G T C EC + P +P TI + P P HCI +
Sbjct: 161 SSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMATIASMPRLPEHCIEY 220
Query: 62 AKHL 65
+ L
Sbjct: 221 VRML 224
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 15/67 (22%)
Query: 216 DVSRPGLDKS--FYGDRLTVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNA 273
D+ RP + + F DR+ P+ N+V H I DF +++QF +++
Sbjct: 87 DIGRPKAEVAAEFLNDRV-----------PNCNVVPHFNKI--QDFNDTFYRQFHIIVCG 133
Query: 274 LDNRVSK 280
LD+ +++
Sbjct: 134 LDSIIAR 140
>pdb|3DBH|B Chain B, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|D Chain D, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|F Chain F, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|H Chain H, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
Length = 434
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 4 ASEVPLIESGTAGYEGQVELIKKGETKCYEC--DPKPAAKTYPGCTIRNTPSEPIHCIVW 61
+S VPLI+ GT G++G +I G T C EC + P +P TI + P P HCI +
Sbjct: 164 SSIVPLIDGGTEGFKGNAAVILPGMTACIECTLELYPPQVNFPMATIASMPRLPEHCIEY 223
Query: 62 AKHL 65
+ L
Sbjct: 224 VRML 227
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 15/67 (22%)
Query: 216 DVSRPGLDKS--FYGDRLTVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNA 273
D+ RP + + F DR+ P+ N+V H I DF +++QF +++
Sbjct: 90 DIGRPKAEVAAEFLNDRV-----------PNCNVVPHFNKI--QDFNDTFYRQFHIIVCG 136
Query: 274 LDNRVSK 280
LD+ +++
Sbjct: 137 LDSIIAR 143
>pdb|1MUK|A Chain A, Reovirus Lambda3 Native Structure
pdb|1MWH|A Chain A, Reovirus Polymerase Lambda3 Bound To Mrna Cap Analog
pdb|1N1H|A Chain A, Initiation Complex Of Polymerase Lambda3 From Reovirus
pdb|1N35|A Chain A, Lambda3 Elongation Complex With Four Phosphodiester Bond
Formed
pdb|1N38|A Chain A, Reovirus Polymerase Lambda3 Elongation Complex With One
Phosphodiester Bond Formed
pdb|1UON|A Chain A, Reovirus Polymerase Lambda-3 Localized By Electron
Cryomicroscopy Of Virions At 7.6-a Resolution
Length = 1267
Score = 27.7 bits (60), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 17/39 (43%)
Query: 150 RYLISMSDLWKTRKAPQPLVWDTLSDAVAGSSKETDGGG 188
RYL L R A QP WD L A+ S T GG
Sbjct: 423 RYLYRTWYLAAARMAAQPRTWDPLFQAIMRSQYVTARGG 461
>pdb|2CSE|1 Chain 1, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
Length = 1267
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 17/39 (43%)
Query: 150 RYLISMSDLWKTRKAPQPLVWDTLSDAVAGSSKETDGGG 188
RYL L R A QP WD L A+ S T GG
Sbjct: 423 RYLYRTWYLAAARMAAQPRTWDPLFQAIMRSQYVTARGG 461
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,608,383
Number of Sequences: 62578
Number of extensions: 339407
Number of successful extensions: 885
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 837
Number of HSP's gapped (non-prelim): 51
length of query: 288
length of database: 14,973,337
effective HSP length: 98
effective length of query: 190
effective length of database: 8,840,693
effective search space: 1679731670
effective search space used: 1679731670
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)