Query psy9781
Match_columns 288
No_of_seqs 194 out of 1063
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 19:25:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9781.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9781hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2013|consensus 100.0 6.5E-54 1.4E-58 413.6 7.0 262 1-286 123-395 (603)
2 TIGR01408 Ube1 ubiquitin-activ 100.0 5.4E-49 1.2E-53 415.7 7.3 266 1-286 538-863 (1008)
3 KOG2012|consensus 100.0 1.4E-48 2.9E-53 394.1 5.9 261 1-285 549-868 (1013)
4 cd01490 Ube1_repeat2 Ubiquitin 100.0 4.4E-46 9.6E-51 363.2 8.3 202 1-286 118-334 (435)
5 cd01489 Uba2_SUMO Ubiquitin ac 100.0 1.4E-37 3E-42 293.0 4.4 156 1-286 110-267 (312)
6 cd01484 E1-2_like Ubiquitin ac 99.9 6.4E-28 1.4E-32 219.4 3.3 66 1-66 111-176 (234)
7 cd01488 Uba3_RUB Ubiquitin act 99.8 5.3E-22 1.1E-26 185.7 5.6 120 5-143 120-257 (291)
8 KOG2015|consensus 99.8 3.5E-21 7.6E-26 179.9 5.2 130 7-154 165-312 (422)
9 PF10585 UBA_e1_thiolCys: Ubiq 99.8 5E-21 1.1E-25 131.8 -1.2 41 27-67 1-41 (45)
10 KOG2013|consensus 99.5 1.5E-15 3.3E-20 148.2 -2.0 76 208-287 49-124 (603)
11 KOG2012|consensus 98.7 2.5E-09 5.3E-14 110.4 -0.7 76 208-287 472-550 (1013)
12 KOG2015|consensus 98.6 1.4E-08 3.1E-13 95.9 2.0 71 207-283 76-146 (422)
13 cd01484 E1-2_like Ubiquitin ac 98.5 3.6E-08 7.7E-13 90.1 0.3 76 208-287 36-112 (234)
14 PF02134 UBACT: Repeat in ubiq 98.3 2.7E-08 5.9E-13 74.0 -3.9 52 233-286 2-57 (67)
15 cd01488 Uba3_RUB Ubiquitin act 98.2 1.6E-07 3.5E-12 88.4 -1.2 72 208-285 36-107 (291)
16 cd01490 Ube1_repeat2 Ubiquitin 98.2 2.2E-07 4.7E-12 91.8 -0.7 76 208-287 41-119 (435)
17 cd01489 Uba2_SUMO Ubiquitin ac 98.2 3E-07 6.4E-12 87.4 0.1 76 208-287 36-111 (312)
18 TIGR01408 Ube1 ubiquitin-activ 98.0 1.1E-06 2.4E-11 94.7 -1.1 77 208-288 461-540 (1008)
19 TIGR02356 adenyl_thiF thiazole 97.9 7.4E-06 1.6E-10 72.9 3.3 50 1-50 131-181 (202)
20 PRK07411 hypothetical protein; 97.7 1.4E-05 3.1E-10 78.0 2.4 48 1-48 148-197 (390)
21 TIGR03736 PRTRC_ThiF PRTRC sys 97.7 1.3E-05 2.7E-10 73.9 1.6 46 6-51 134-195 (244)
22 PRK05597 molybdopterin biosynt 97.7 1.9E-05 4.1E-10 76.2 2.1 51 1-51 138-190 (355)
23 PRK08328 hypothetical protein; 97.5 2.8E-05 6.2E-10 70.6 1.1 37 1-37 138-174 (231)
24 PRK08223 hypothetical protein; 97.5 8.6E-05 1.9E-09 69.9 3.8 51 1-52 139-202 (287)
25 PRK08762 molybdopterin biosynt 97.4 8.3E-05 1.8E-09 72.1 2.9 50 1-50 245-300 (376)
26 COG0476 ThiF Dinucleotide-util 97.4 0.00011 2.4E-09 67.2 3.3 37 1-37 140-177 (254)
27 TIGR03603 cyclo_dehy_ocin bact 97.4 7E-05 1.5E-09 71.4 1.6 37 1-37 173-209 (318)
28 PRK12475 thiamine/molybdopteri 97.3 0.00015 3.3E-09 69.6 2.6 37 1-37 136-172 (338)
29 PRK07878 molybdopterin biosynt 97.2 0.00019 4.2E-09 70.1 2.8 48 1-48 152-205 (392)
30 PRK05690 molybdopterin biosynt 97.2 0.00025 5.4E-09 65.1 3.2 37 1-37 142-179 (245)
31 cd00757 ThiF_MoeB_HesA_family 97.2 0.0003 6.5E-09 63.6 3.2 37 1-37 131-167 (228)
32 PRK07688 thiamine/molybdopteri 97.1 0.00035 7.7E-09 67.1 3.0 37 1-37 136-172 (339)
33 PRK05600 thiamine biosynthesis 97.0 0.00042 9E-09 67.4 2.7 49 1-49 151-204 (370)
34 KOG2017|consensus 96.9 0.00039 8.3E-09 66.9 1.8 46 2-47 177-224 (427)
35 TIGR03736 PRTRC_ThiF PRTRC sys 96.8 0.00039 8.4E-09 64.1 0.4 70 208-287 58-127 (244)
36 cd01486 Apg7 Apg7 is an E1-lik 96.7 0.00038 8.3E-09 66.0 0.0 76 208-287 36-129 (307)
37 TIGR02355 moeB molybdopterin s 96.7 0.0012 2.6E-08 60.5 3.2 37 1-37 134-171 (240)
38 TIGR01381 E1_like_apg7 E1-like 96.6 0.00051 1.1E-08 71.0 -0.3 77 208-288 375-470 (664)
39 PRK08223 hypothetical protein; 96.4 0.00076 1.6E-08 63.6 0.1 75 208-287 64-140 (287)
40 COG0476 ThiF Dinucleotide-util 96.4 0.00082 1.8E-08 61.5 -0.0 77 207-288 66-142 (254)
41 cd01491 Ube1_repeat1 Ubiquitin 96.4 0.00094 2E-08 62.9 0.3 64 1-67 125-190 (286)
42 TIGR02356 adenyl_thiF thiazole 96.3 0.0009 1.9E-08 59.5 -0.5 75 208-287 58-132 (202)
43 cd01492 Aos1_SUMO Ubiquitin ac 96.3 0.0012 2.5E-08 58.7 0.3 74 208-287 58-131 (197)
44 PRK07411 hypothetical protein; 96.2 0.00088 1.9E-08 65.5 -1.0 75 208-287 75-149 (390)
45 PRK14851 hypothetical protein; 96.2 0.0011 2.4E-08 69.2 -0.5 75 208-287 80-156 (679)
46 PRK07878 molybdopterin biosynt 96.1 0.0013 2.8E-08 64.3 -0.3 75 208-287 79-153 (392)
47 cd00755 YgdL_like Family of ac 96.1 0.0015 3.2E-08 59.7 -0.2 76 208-287 48-123 (231)
48 PRK05690 molybdopterin biosynt 96.0 0.0021 4.5E-08 59.0 0.6 75 208-287 69-143 (245)
49 PRK05597 molybdopterin biosynt 96.0 0.0013 2.8E-08 63.6 -1.2 75 208-287 65-139 (355)
50 PRK05600 thiamine biosynthesis 95.9 0.0013 2.8E-08 64.0 -1.3 75 208-287 78-152 (370)
51 cd00757 ThiF_MoeB_HesA_family 95.8 0.0023 4.9E-08 57.9 -0.3 75 208-287 58-132 (228)
52 TIGR02355 moeB molybdopterin s 95.6 0.0023 5.1E-08 58.6 -0.8 75 208-287 61-135 (240)
53 COG1179 Dinucleotide-utilizing 95.5 0.002 4.3E-08 59.5 -1.9 77 207-287 66-142 (263)
54 PRK08328 hypothetical protein; 95.4 0.0053 1.1E-07 55.8 0.7 73 208-284 64-136 (231)
55 PRK14852 hypothetical protein; 95.3 0.0041 8.8E-08 67.1 -0.5 71 208-283 369-441 (989)
56 cd01485 E1-1_like Ubiquitin ac 95.2 0.0052 1.1E-07 54.6 0.1 76 208-287 56-134 (198)
57 PRK08762 molybdopterin biosynt 94.9 0.0062 1.3E-07 59.1 -0.3 75 208-287 172-246 (376)
58 PRK15116 sulfur acceptor prote 94.8 0.0055 1.2E-07 57.3 -1.1 75 208-287 67-142 (268)
59 cd01491 Ube1_repeat1 Ubiquitin 94.5 0.0097 2.1E-07 56.1 -0.1 71 208-287 56-126 (286)
60 PRK14852 hypothetical protein; 94.3 0.025 5.4E-07 61.2 2.5 35 2-37 445-479 (989)
61 cd01483 E1_enzyme_family Super 94.3 0.016 3.4E-07 48.2 0.8 72 208-284 36-107 (143)
62 PRK07877 hypothetical protein; 94.3 0.0078 1.7E-07 63.4 -1.4 74 208-287 144-217 (722)
63 PF00899 ThiF: ThiF family; I 94.2 0.0046 1E-07 51.0 -2.7 73 209-286 40-112 (135)
64 PRK14851 hypothetical protein; 94.0 0.031 6.7E-07 58.6 2.3 36 1-37 155-190 (679)
65 cd01487 E1_ThiF_like E1_ThiF_l 93.9 0.025 5.5E-07 49.2 1.2 69 208-282 36-104 (174)
66 PRK08644 thiamine biosynthesis 93.6 0.015 3.2E-07 52.3 -0.8 71 208-284 65-135 (212)
67 TIGR01381 E1_like_apg7 E1-like 92.2 0.098 2.1E-06 54.5 2.7 65 1-67 468-557 (664)
68 PRK07688 thiamine/molybdopteri 91.6 0.039 8.5E-07 53.1 -0.9 77 208-287 61-137 (339)
69 PRK12475 thiamine/molybdopteri 91.0 0.039 8.5E-07 53.1 -1.5 77 208-287 61-137 (338)
70 TIGR02354 thiF_fam2 thiamine b 88.8 0.14 3.1E-06 45.6 0.3 69 208-282 58-126 (200)
71 cd01487 E1_ThiF_like E1_ThiF_l 88.5 0.31 6.8E-06 42.3 2.2 34 2-35 109-145 (174)
72 PRK07877 hypothetical protein; 84.8 0.55 1.2E-05 49.8 2.1 34 1-37 216-253 (722)
73 PRK06153 hypothetical protein; 84.2 0.23 5E-06 48.9 -0.9 71 208-286 213-286 (393)
74 KOG2336|consensus 83.9 0.4 8.8E-06 45.5 0.6 36 2-37 204-241 (422)
75 cd01485 E1-1_like Ubiquitin ac 81.3 0.59 1.3E-05 41.4 0.6 25 1-25 133-157 (198)
76 cd01493 APPBP1_RUB Ubiquitin a 80.7 0.85 1.8E-05 45.4 1.6 36 1-37 132-167 (425)
77 cd01493 APPBP1_RUB Ubiquitin a 75.4 1 2.2E-05 44.9 0.3 71 208-282 57-128 (425)
78 cd01492 Aos1_SUMO Ubiquitin ac 73.7 1.8 3.9E-05 38.3 1.5 24 1-24 130-153 (197)
79 KOG2336|consensus 66.0 3.3 7.1E-05 39.5 1.5 73 208-287 119-204 (422)
80 PRK08644 thiamine biosynthesis 57.4 8.1 0.00018 34.6 2.4 27 2-28 138-165 (212)
81 TIGR03693 ocin_ThiF_like putat 54.7 3.8 8.2E-05 42.8 -0.2 33 2-36 227-262 (637)
82 TIGR03603 cyclo_dehy_ocin bact 50.3 5.7 0.00012 38.0 0.2 59 208-282 109-167 (318)
83 PF05237 MoeZ_MoeB: MoeZ/MoeB 48.2 4.7 0.0001 30.7 -0.5 23 27-49 1-23 (84)
84 KOG2017|consensus 32.7 23 0.00049 34.9 1.3 69 208-281 103-171 (427)
85 cd01486 Apg7 Apg7 is an E1-lik 27.1 53 0.0012 31.5 2.7 22 1-23 128-149 (307)
86 PTZ00245 ubiquitin activating 25.0 51 0.0011 31.2 2.1 62 208-281 63-124 (287)
No 1
>KOG2013|consensus
Probab=100.00 E-value=6.5e-54 Score=413.57 Aligned_cols=262 Identities=42% Similarity=0.655 Sum_probs=209.5
Q ss_pred CcccCCCCeeecccCCCCceeEEEeCCCCCCCcCcCCCCCCCCCCCCCCCCCCCchhHHHHHH-HHhhhcCCCCchHHhh
Q psy9781 1 MCLASEVPLIESGTAGYEGQVELIKKGETKCYECDPKPAAKTYPGCTIRNTPSEPIHCIVWAK-HLFNLEGSAPGLLVLA 79 (288)
Q Consensus 1 ~Cv~~~~PLIesGt~G~~Gqv~viiP~~T~cy~c~~~~~~~~~P~CTir~~P~~p~HcI~WAk-~lF~~~~~~~~~~~~~ 79 (288)
||+.+++|||||||.||.|||++|++|.||||+|.++|.+++||+|||||+|++|+|||+||| .+|+
T Consensus 123 ~C~~a~vPLIesGt~Gf~GQv~~ii~GkTECyeC~pK~~~kTypvCTIRstPS~~iHCIVWAK~~lF~------------ 190 (603)
T KOG2013|consen 123 MCLAASVPLIESGTGGFLGQVQVIIKGKTECYECIPKPVPKTYPVCTIRSTPSEPIHCIVWAKHYLFN------------ 190 (603)
T ss_pred HHHhhcCCceecCcccccceEEEEecCCcceecccCCCCCCcCCceEeecCCCCceeeeeehHhHHHH------------
Confidence 799999999999999999999999999999999999999999999999999999999999999 6899
Q ss_pred hcccCCCCCCCCcCCCCCCCchhhcChhH-HH-HhHHhhhcCcceeccccchhccccchHHHHHHHhhHHHHHHHHhCCc
Q psy9781 80 QGQLFGEIDADEEVSPDTEDPEAVGDAGA-KA-AASEATANGDVVRTSTRAWASACGYDPRKLFAKFFDADIRYLISMSD 157 (288)
Q Consensus 80 ~~~lF~~~~~~~~~~~~~~dp~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~c~~~a~~~f~~~F~~~I~~Ll~~~~ 157 (288)
+|||+.+.++....+-.||+..++..+ .+ ...+.. ....++.+...|...-.+-..++|.++|-.||+|||.|+.
T Consensus 191 --qlF~~d~~~q~~~~d~~d~d~~e~~t~~~~~~~~et~-d~~Er~~~i~~~~~~~~~~~~~i~~klF~~dI~yl~~~e~ 267 (603)
T KOG2013|consen 191 --QLFGEDDDDQYGRHDNADPDNCEDMTEEEAEAFRETE-DLKERRESIVEIDKNLDFGPFKIFNKLFIYDIEYLLGMEA 267 (603)
T ss_pred --HHhccccccccccccccCchhhhccChhhhhhhccch-HHHHHHHHHHHHhhccCCChhhhhhHHHHHHHHHHHhhhh
Confidence 999998776666666667765543321 11 111111 1112233333444444566789999999999999999999
Q ss_pred cccCCCCCCccccccchhhh-h--CCCCcC-CCCCCCCcccccHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCceee
Q psy9781 158 LWKTRKAPQPLVWDTLSDAV-A--GSSKET-DGGGLKDQRVWSVAECARVFERSVRELKTKFDVSRPGLDKSFYGDRLTV 233 (288)
Q Consensus 158 ~W~~rr~P~Pl~~~~~~~~~-~--~~~~~~-~~~~~~~q~~ws~~e~~~vf~~s~s~L~rqf~~~~~~~~k~~~~~~l~f 233 (288)
+|+.|++|.||+|....... . ++..++ -+..+.+|.+|++++++.+|..++..|.-+...... .-.+.|
T Consensus 268 ~wk~r~~p~pl~~~~~i~~~~~t~ns~~q~~~~a~~~~~~v~~v~~~~~vf~~~i~~l~~~~~~~~~-------h~~l~f 340 (603)
T KOG2013|consen 268 LWKPRSRPVPLSIAEVISTSLETINSIVQSITSAQLNDQNVWTVDEGAVVFRLSIQALDLRCPKESD-------HWYLIF 340 (603)
T ss_pred hccCCCCCCCcchhhccCCccccccchhhhccccccCCcceeeeccccHHHHHHHHHhcccCCccCC-------CceEEE
Confidence 99999999999998763221 1 111121 134577999999999999999999999555443333 236899
Q ss_pred e--hhhhhcccc-cceEeEEcCCCCCC-CCChhhhcccCeEEEchhchhhhhhheee
Q psy9781 234 A--RNSALNFNP-DANIVAHHTSIISA-DFGVNYFKQFTLVMNALDNRVSKFSALLL 286 (288)
Q Consensus 234 d--d~~~~dFV~-aaNLRA~~f~I~~~-~~~~~~~~~f~~V~nALdn~~Ar~~~l~~ 286 (288)
| |..+|+||+ +||||||+|||+++ .|+++.++| .|+||++++.|.+.||++
T Consensus 341 dKdd~~~~~FVaaaaNiRa~if~ipmkS~Fdik~mAg--nIipaIAtTNAiIagliv 395 (603)
T KOG2013|consen 341 DKDDASTMEFVAAAANIRAHIFGIPMKSLFDIKQMAG--NIIPAIATTNAIIAGLIV 395 (603)
T ss_pred cCCcHHHHHHHHHHhhhhhhhhccchhhhhchHhHhc--ccchhhhhhhhHHHHHHH
Confidence 8 788999999 99999999999987 899999999 999999999999999853
No 2
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=100.00 E-value=5.4e-49 Score=415.69 Aligned_cols=266 Identities=21% Similarity=0.324 Sum_probs=201.4
Q ss_pred CcccCCCCeeecccCCCCceeEEEeCCCCCCCcCcCCCCCCCCCCCCCCCCCCCchhHHHHHHHHhhhcCCCCchHHhhh
Q psy9781 1 MCLASEVPLIESGTAGYEGQVELIKKGETKCYECDPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNLEGSAPGLLVLAQ 80 (288)
Q Consensus 1 ~Cv~~~~PLIesGt~G~~Gqv~viiP~~T~cy~c~~~~~~~~~P~CTir~~P~~p~HcI~WAk~lF~~~~~~~~~~~~~~ 80 (288)
+|+.+++|||+|||.|++||+++++|+.|+||+|.++|+++++|+|||||||+.|+|||+|||++|+
T Consensus 538 ~c~~~~iPli~~gt~G~~G~v~v~ip~~te~y~~~~d~~~~~~P~Ctl~~~P~~~~h~i~wa~~~f~------------- 604 (1008)
T TIGR01408 538 RCLAFLKPLLESGTLGTKGNTQVVVPHLTESYGSSRDPPEKEIPFCTLKSFPAAIEHTIQWARDKFE------------- 604 (1008)
T ss_pred HHHHcCCCEEEEeccCceeeEEEEeCCCcCCCCCCCCCCCCCCCcccccCCCCCchHHHHHHHHHHH-------------
Confidence 5999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCcCCCCCCCchhh-cChhHH----HHhHHhhhcCcceeccccchhccccchHHHHHHHhhHHHHHHHHhC
Q psy9781 81 GQLFGEIDADEEVSPDTEDPEAV-GDAGAK----AAASEATANGDVVRTSTRAWASACGYDPRKLFAKFFDADIRYLISM 155 (288)
Q Consensus 81 ~~lF~~~~~~~~~~~~~~dp~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~c~~~a~~~f~~~F~~~I~~Ll~~ 155 (288)
++|++. +++++.++++|..+ +....+ .+.........+...++.+| .+|+.||+.+|+++|+++|++||++
T Consensus 605 -~~F~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~~p~~~-~~cv~~a~~~f~~~F~~~I~qLl~~ 680 (1008)
T TIGR01408 605 -GLFSHK--PSLVNKYLSSPSSAEEVLQKIQSGHSREGLEQIIKLLSKEKPRNF-SQCVEWARLKFEKYFNNKALQLLHC 680 (1008)
T ss_pred -HHHHhh--HHHHHHHhhChHHHHHHHHhcCchhHHHHHHHHHHHHhhcCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999997 47788899998433 211110 01100111111212234456 5899999999999999999999999
Q ss_pred ----------CccccC-CCCCCccccccchhhh-------h----------CCC-Cc-----------CCC---CCCCCc
Q psy9781 156 ----------SDLWKT-RKAPQPLVWDTLSDAV-------A----------GSS-KE-----------TDG---GGLKDQ 192 (288)
Q Consensus 156 ----------~~~W~~-rr~P~Pl~~~~~~~~~-------~----------~~~-~~-----------~~~---~~~~~q 192 (288)
++||++ ||+|+||+|+...+.+ + ... +. ..- ....++
T Consensus 681 fP~d~~~~~G~~fWs~~kr~P~pl~Fd~~~~~h~~Fi~aaanL~A~~ygi~~~~~~~~~~~~~~~~~~~~vp~f~p~~~~ 760 (1008)
T TIGR01408 681 FPLDIRTSTGSPFWSSPKRPPSPLKFDLNEPLHLSFIQAAAKLYATVYGIPFAEEDLSADALLNILSEVKIPEFKPRSNK 760 (1008)
T ss_pred CCccccccCCCccccCCCCCCCceeeCCCCHHHHHHHHHHHHHHHHHhCCCCccccchHHHHHHHHhcCCCCCCCCCcCc
Confidence 799997 9999999999753211 0 000 00 000 013345
Q ss_pred ccccH------HHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCceeee--h--hhhhcccc-cceEeEEcCCCCCC-CCC
Q psy9781 193 RVWSV------AECARVFERSVRELKTKFDVSRPGLDKSFYGDRLTVA--R--NSALNFNP-DANIVAHHTSIISA-DFG 260 (288)
Q Consensus 193 ~~ws~------~e~~~vf~~s~s~L~rqf~~~~~~~~k~~~~~~l~fd--d--~~~~dFV~-aaNLRA~~f~I~~~-~~~ 260 (288)
++|+- .++...+.+.+.+|.++++......| +.+..|++|+ | +.|||||+ +|||||.+|+|++. ++.
T Consensus 761 ~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~p~~FeKDDd~n~HidFI~AasNLRA~nY~I~~~d~~~ 839 (1008)
T TIGR01408 761 KIQTDETARKPDTAPEDDRNAIFQLEKAILSNEATKS-DFRMAPLSFEKDDDHNGHIDFITAASNLRAKNYSIEPADRFK 839 (1008)
T ss_pred eeecChhhhcccccccchHHHHHHHHHHhhccccccC-CCCCCceeeccCCCcchHHHHHHHHHhhHHHhcCCCcccHHH
Confidence 66652 21122356778888888776543222 1346789998 3 45999999 99999999999998 668
Q ss_pred hhhhcccCeEEEchhchhhhhhheee
Q psy9781 261 VNYFKQFTLVMNALDNRVSKFSALLL 286 (288)
Q Consensus 261 ~~~~~~f~~V~nALdn~~Ar~~~l~~ 286 (288)
+++++| .||||++|+||.++||+.
T Consensus 840 ~K~iAG--~IIPAiATTTA~vaGLv~ 863 (1008)
T TIGR01408 840 TKFIAG--KIIPAIATSTATVSGLVC 863 (1008)
T ss_pred HHHHhc--cccchhhhHHHHHHHHHH
Confidence 999999 999999999999999973
No 3
>KOG2012|consensus
Probab=100.00 E-value=1.4e-48 Score=394.11 Aligned_cols=261 Identities=23% Similarity=0.378 Sum_probs=198.5
Q ss_pred CcccCCCCeeecccCCCCceeEEEeCCCCCCCcCcCCCCCCCCCCCCCCCCCCCchhHHHHHHHHhhhcCCCCchHHhhh
Q psy9781 1 MCLASEVPLIESGTAGYEGQVELIKKGETKCYECDPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNLEGSAPGLLVLAQ 80 (288)
Q Consensus 1 ~Cv~~~~PLIesGt~G~~Gqv~viiP~~T~cy~c~~~~~~~~~P~CTir~~P~~p~HcI~WAk~lF~~~~~~~~~~~~~~ 80 (288)
+||.+.|||+||||+|++|++|||+||.||+|+.+.+|+++++|+||+||||+.++|||+|||++|+
T Consensus 549 RCv~~~kPLLESGTlGTKGntQVvvPhlTEsY~SS~DPPEksiP~CTlknFPn~IeHTiqWAR~eFE------------- 615 (1013)
T KOG2012|consen 549 RCVYYRKPLLESGTLGTKGNTQVVVPHLTESYGSSRDPPEKSIPVCTLKSFPNAIEHTIQWARDEFE------------- 615 (1013)
T ss_pred hhhhhccchhhccCcCCccceeEEeccccccccccCCCcccCCceeeeccCchHHHHHHHHHHHHHH-------------
Confidence 6999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCcCCCCCCCchhhcChh----H-HHHhHHhhhcCcceeccccchhccccchHHHHHHHhhHHHHHHHHhC
Q psy9781 81 GQLFGEIDADEEVSPDTEDPEAVGDAG----A-KAAASEATANGDVVRTSTRAWASACGYDPRKLFAKFFDADIRYLISM 155 (288)
Q Consensus 81 ~~lF~~~~~~~~~~~~~~dp~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~c~~~a~~~f~~~F~~~I~~Ll~~ 155 (288)
++|..+ .+.++.|+.+|...+... + +.+.......+.+. .++..|. +|+.||+..|+++|+++|+|||+.
T Consensus 616 -g~F~~~--~e~vN~yls~p~f~e~sl~~~~~~~~~~~l~~v~~~l~-~rp~~~~-dCv~warl~f~~~f~~~ikqLl~~ 690 (1013)
T KOG2012|consen 616 -GLFKQS--AENVNKYLSDPVFYETSLKLIGEPQSLETLERVVDCLS-ERPQNWQ-DCVEWARLHFEKYFHNRIKQLLHN 690 (1013)
T ss_pred -HHhhCC--HHHHHHHhcCchHHHHHHhhccCcchhHHHHHHHHHhh-cCCccHH-HHHHHHHHHHHHHhhHHHHHhhcC
Confidence 999997 477999999998654321 1 11111111111222 3556684 999999999999999999999988
Q ss_pred ----------CccccC-CCCCCccccccchhhh-------h----------CCCCc---------CCCC----------C
Q psy9781 156 ----------SDLWKT-RKAPQPLVWDTLSDAV-------A----------GSSKE---------TDGG----------G 188 (288)
Q Consensus 156 ----------~~~W~~-rr~P~Pl~~~~~~~~~-------~----------~~~~~---------~~~~----------~ 188 (288)
.+||++ ||+|+||+||...+.+ + ...+. ...+ .
T Consensus 691 FP~d~~t~~G~pFWs~pKr~P~pl~Fd~n~~~hl~fv~Aaa~l~a~~~gi~~~~d~~~~~~~~~~v~~p~f~P~~~~~i~ 770 (1013)
T KOG2012|consen 691 FPPDAKTSDGAPFWSGPKRCPRPLEFDVNDPLHLNFVQAAANLRAEVYGIPGSQDREALAELLERVIVPEFEPKQKVKIV 770 (1013)
T ss_pred CCcccccCCCCcCCCCCCCCCCceeecCCCchhHHHHHHHHHHHHHhcCCCcccCHHHhhhhHhhcCCCccccccCCeec
Confidence 589997 9999999999864321 0 00000 0000 0
Q ss_pred CCCcccccHHHHHHHHH-HHHHHHHhhhcccCCCCCCCCCCCceeee----hhhhhcccc-cceEeEEcCCCCCC-CCCh
Q psy9781 189 LKDQRVWSVAECARVFE-RSVRELKTKFDVSRPGLDKSFYGDRLTVA----RNSALNFNP-DANIVAHHTSIISA-DFGV 261 (288)
Q Consensus 189 ~~~q~~ws~~e~~~vf~-~s~s~L~rqf~~~~~~~~k~~~~~~l~fd----d~~~~dFV~-aaNLRA~~f~I~~~-~~~~ 261 (288)
..+... ...+..+-. .++..|+..+.....+ ++.+..|+.|+ .+.||||++ +|||||.+|+|+++ +..+
T Consensus 771 ~~~~~~--~~~~~s~d~~~~i~~l~~~l~~~~~~--~~~~~~p~~FEKDDDsN~H~dfi~aasnlRA~nY~I~~adr~k~ 846 (1013)
T KOG2012|consen 771 VEEAEL--AASSASVDDSAAIDQLNKALPSPSVL--PSFKMKPLDFEKDDDSNFHMDFITAASNLRAQNYSIPPADRLKT 846 (1013)
T ss_pred cccccc--ccccccCCchHHHHHHhhcccccccC--CCCceeeeeeccccccccchHHHHHHhhhhhhccCCCccchhhh
Confidence 000000 001111111 2567787777665543 44567899997 368999999 99999999999998 5579
Q ss_pred hhhcccCeEEEchhchhhhhhhee
Q psy9781 262 NYFKQFTLVMNALDNRVSKFSALL 285 (288)
Q Consensus 262 ~~~~~f~~V~nALdn~~Ar~~~l~ 285 (288)
++|+| .||||++|+||.++||+
T Consensus 847 K~IaG--kIIPAIATtTa~v~Glv 868 (1013)
T KOG2012|consen 847 KRIAG--KIIPAIATTTAAVSGLV 868 (1013)
T ss_pred heeee--eEEEEEeehhHHHHHHH
Confidence 99999 99999999999999997
No 4
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=100.00 E-value=4.4e-46 Score=363.24 Aligned_cols=202 Identities=25% Similarity=0.432 Sum_probs=171.4
Q ss_pred CcccCCCCeeecccCCCCceeEEEeCCCCCCCcCcCCCCCCCCCCCCCCCCCCCchhHHHHHHHHhhhcCCCCchHHhhh
Q psy9781 1 MCLASEVPLIESGTAGYEGQVELIKKGETKCYECDPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNLEGSAPGLLVLAQ 80 (288)
Q Consensus 1 ~Cv~~~~PLIesGt~G~~Gqv~viiP~~T~cy~c~~~~~~~~~P~CTir~~P~~p~HcI~WAk~lF~~~~~~~~~~~~~~ 80 (288)
+|+.+++|||++||.|++||+++++|+.|+||+|..+|+++++|+|||||||+.|+|||+|||++|+
T Consensus 118 ~C~~~~iPli~~gt~G~~G~v~v~iP~~te~y~~~~~p~~~~~P~Ctl~~~P~~~eHcI~wA~~~F~------------- 184 (435)
T cd01490 118 RCVYYRKPLLESGTLGTKGNTQVVIPHLTESYSSSRDPPEKSIPLCTLKNFPNAIEHTIQWARDEFE------------- 184 (435)
T ss_pred HHHHhCCCEEEEecccceeEEEEEeCCCCCCccCCCCCCCCCCCCccccCCCCCchHHHHHHHHHHH-------------
Confidence 5999999999999999999999999999999999999989999999999999999999999999999
Q ss_pred cccCCCCCCCCcCCCCCCCchhhcChhHHHHhHHhhhcCcceeccccchhccccchHHHHHHHhhHHHHHHHHhC-----
Q psy9781 81 GQLFGEIDADEEVSPDTEDPEAVGDAGAKAAASEATANGDVVRTSTRAWASACGYDPRKLFAKFFDADIRYLISM----- 155 (288)
Q Consensus 81 ~~lF~~~~~~~~~~~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~a~~~f~~~F~~~I~~Ll~~----- 155 (288)
++|++.. ++++.++ | .+|+.||+.+|+++|+++|++||++
T Consensus 185 -~lF~~~~--~~~~~~~-------------------------------~-~~c~~~a~~~f~~~F~~~I~~ll~~~p~d~ 229 (435)
T cd01490 185 -GLFKQPP--ENVNQYL-------------------------------F-EDCVRWARLLFEKYFNNNIKQLLHNFPPDA 229 (435)
T ss_pred -HHhccch--HHHHHhh-------------------------------H-HHHHHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence 9999863 2221111 2 5899999999999999999999997
Q ss_pred -----CccccC-CCCCCccccccchhhhhCCCCcCCCCCCCCcccccHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCC
Q psy9781 156 -----SDLWKT-RKAPQPLVWDTLSDAVAGSSKETDGGGLKDQRVWSVAECARVFERSVRELKTKFDVSRPGLDKSFYGD 229 (288)
Q Consensus 156 -----~~~W~~-rr~P~Pl~~~~~~~~~~~~~~~~~~~~~~~q~~ws~~e~~~vf~~s~s~L~rqf~~~~~~~~k~~~~~ 229 (288)
++||++ ||+|+||+|+..... ...|..+..+|..+.....
T Consensus 230 ~~~~g~~fw~~~kr~P~p~~fd~~~~~------------------------h~~fv~~~a~l~a~~~~~~---------- 275 (435)
T cd01490 230 VTSDGAPFWSGPKRCPTPLEFDVNNPL------------------------HLDFVLAAANLYAEVYGIP---------- 275 (435)
T ss_pred ccccccccccCCCCCCCCCCCCCCCHH------------------------HHHHHHHHHHHHHHhcCCC----------
Confidence 799997 999999999874321 1357788888876553211
Q ss_pred ceeeeh--hhhhcccc-cceEeEEcCCCCCC-CCChhhhcccCeEEEchhchhhhhhheee
Q psy9781 230 RLTVAR--NSALNFNP-DANIVAHHTSIISA-DFGVNYFKQFTLVMNALDNRVSKFSALLL 286 (288)
Q Consensus 230 ~l~fdd--~~~~dFV~-aaNLRA~~f~I~~~-~~~~~~~~~f~~V~nALdn~~Ar~~~l~~ 286 (288)
..+-|| +.||+||+ +|||||++|+|++. .+.++.++| .||||+++++|.++||+.
T Consensus 276 ~FeKDdd~n~h~~fi~a~snlRa~~y~I~~~~~~~~k~iag--~IIPAiaTT~aivagl~~ 334 (435)
T cd01490 276 GFEKDDDTNFHMDFITAASNLRARNYSIPPADRHKTKRIAG--KIIPAIATTTAAVTGLVC 334 (435)
T ss_pred ccccCCchhHHHHHHHHhhhhHHHHcCCCccCHHHHHHHhh--CCCCchhhHHHHHHHHHH
Confidence 123333 45999999 99999999999988 568999998 999999999999999974
No 5
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=100.00 E-value=1.4e-37 Score=293.00 Aligned_cols=156 Identities=50% Similarity=0.920 Sum_probs=142.2
Q ss_pred CcccCCCCeeecccCCCCceeEEEeCCCCCCCcCcCCCCCCCCCCCCCCCCCCCchhHHHHHHHHhhhcCCCCchHHhhh
Q psy9781 1 MCLASEVPLIESGTAGYEGQVELIKKGETKCYECDPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNLEGSAPGLLVLAQ 80 (288)
Q Consensus 1 ~Cv~~~~PLIesGt~G~~Gqv~viiP~~T~cy~c~~~~~~~~~P~CTir~~P~~p~HcI~WAk~lF~~~~~~~~~~~~~~ 80 (288)
+|+.+++|+|++||.|+.||+++++|+.|+||+|..+++++++|+|||+++|+.|+|||+|||++|+
T Consensus 110 ~c~~~~ip~I~~gt~G~~G~v~vi~p~~t~c~~c~~~~~~~~~pictI~~~p~~~~hci~~a~~~f~------------- 176 (312)
T cd01489 110 MCLAADVPLIESGTTGFLGQVQVIKKGKTECYECQPKETPKTFPVCTIRSTPSQPIHCIVWAKSLFF------------- 176 (312)
T ss_pred HHHHCCCCEEEEecCcceeEEEEEcCCCCCccCCCCCCCCCcCCcceecCCCCCCEeehhHHHHHHH-------------
Confidence 5899999999999999999999999999999999999888999999999999999999999999984
Q ss_pred cccCCCCCCCCcCCCCCCCchhhcChhHHHHhHHhhhcCcceeccccchhccccchHHHHHHHhhHHHHHHHHhCCcccc
Q psy9781 81 GQLFGEIDADEEVSPDTEDPEAVGDAGAKAAASEATANGDVVRTSTRAWASACGYDPRKLFAKFFDADIRYLISMSDLWK 160 (288)
Q Consensus 81 ~~lF~~~~~~~~~~~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~a~~~f~~~F~~~I~~Ll~~~~~W~ 160 (288)
+|+++|+++|++|+++++||+
T Consensus 177 -----------------------------------------------------------~~~~~f~~~i~~l~~~~~~w~ 197 (312)
T cd01489 177 -----------------------------------------------------------LFNKVFKDDIERLLSMEELWK 197 (312)
T ss_pred -----------------------------------------------------------HHHHHHHHHHHHHHhhhhhhc
Confidence 588999999999999999999
Q ss_pred CCCCCCccccccchhhhhCCCCcCCCCCCCCcccccHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCceeeehhhhhc
Q psy9781 161 TRKAPQPLVWDTLSDAVAGSSKETDGGGLKDQRVWSVAECARVFERSVRELKTKFDVSRPGLDKSFYGDRLTVARNSALN 240 (288)
Q Consensus 161 ~rr~P~Pl~~~~~~~~~~~~~~~~~~~~~~~q~~ws~~e~~~vf~~s~s~L~rqf~~~~~~~~k~~~~~~l~fdd~~~~d 240 (288)
+|++|.||+|+.. +++-||+.||+
T Consensus 198 ~~~~p~p~~~~~~--------------------------------------------------------~fdkDd~~~~~ 221 (312)
T cd01489 198 TRKPPVPLSWKEL--------------------------------------------------------TFDKDDQDALD 221 (312)
T ss_pred CCCCCCCCCCCCc--------------------------------------------------------CcCCCCHHHHH
Confidence 9889999965430 13344788999
Q ss_pred ccc-cceEeEEcCCCCCC-CCChhhhcccCeEEEchhchhhhhhheee
Q psy9781 241 FNP-DANIVAHHTSIISA-DFGVNYFKQFTLVMNALDNRVSKFSALLL 286 (288)
Q Consensus 241 FV~-aaNLRA~~f~I~~~-~~~~~~~~~f~~V~nALdn~~Ar~~~l~~ 286 (288)
||+ +|||||++|||+.. .+.++.+.| .||||+++++|.++||+.
T Consensus 222 ~v~~~a~lRa~~f~I~~~~~~~~k~i~g--~IiPaiatTnaivag~~~ 267 (312)
T cd01489 222 FVAAAANLRSHVFGIPMKSRFDIKQMAG--NIIPAIATTNAIIAGLIV 267 (312)
T ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHhc--cccchhhHHHHHHHHHHH
Confidence 999 99999999999987 557889998 999999999999999864
No 6
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=99.94 E-value=6.4e-28 Score=219.38 Aligned_cols=66 Identities=47% Similarity=0.879 Sum_probs=63.6
Q ss_pred CcccCCCCeeecccCCCCceeEEEeCCCCCCCcCcCCCCCCCCCCCCCCCCCCCchhHHHHHHHHh
Q psy9781 1 MCLASEVPLIESGTAGYEGQVELIKKGETKCYECDPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLF 66 (288)
Q Consensus 1 ~Cv~~~~PLIesGt~G~~Gqv~viiP~~T~cy~c~~~~~~~~~P~CTir~~P~~p~HcI~WAk~lF 66 (288)
+|+.+++|||++|+.|++||+++++|+.|+||+|.++|+++++|+|||++||++|+|||+||+++|
T Consensus 111 ~c~~~~iplI~~g~~G~~G~v~vi~p~~t~c~~C~~~~~~~~~p~Cti~~~P~~~~hci~~a~~~~ 176 (234)
T cd01484 111 MLIFLIVPLIESGTEGFKGNAQVILPGMTECIECTLYPPQKNFPMCTIASMPRLPEHCIEWARMLQ 176 (234)
T ss_pred HHHHcCCCEEEEcccCCceEEEEEcCCCCCCcccCCCCCCCCCCccccCCCCCCchHHHHHHHHHH
Confidence 488999999999999999999999999999999999888889999999999999999999999877
No 7
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=99.85 E-value=5.3e-22 Score=185.73 Aligned_cols=120 Identities=38% Similarity=0.592 Sum_probs=92.9
Q ss_pred CCCCeeecccCCCCceeEEEeCCCCCCCcCcCC--CCCCCCCCCCCCCCCCCchhHHHHHHHHhhhcCCCCchHHhhhcc
Q psy9781 5 SEVPLIESGTAGYEGQVELIKKGETKCYECDPK--PAAKTYPGCTIRNTPSEPIHCIVWAKHLFNLEGSAPGLLVLAQGQ 82 (288)
Q Consensus 5 ~~~PLIesGt~G~~Gqv~viiP~~T~cy~c~~~--~~~~~~P~CTir~~P~~p~HcI~WAk~lF~~~~~~~~~~~~~~~~ 82 (288)
.++|||++||.|++||+++|+|+.|+||+|..+ |+++++|+||||+||+.|+|||+||+.+.+. .
T Consensus 120 ~~iPlI~~gt~G~~G~v~vi~P~~t~C~~C~~d~~p~~~~~p~Cti~~~P~~~~hci~~a~~~~~~-------------~ 186 (291)
T cd01488 120 SIIPLIDGGTEGFKGHARVILPGITACIECSLDLFPPQVTFPLCTIANTPRLPEHCIEYASLIQWP-------------K 186 (291)
T ss_pred cCccEEEEEEcccEEEEEEEcCCCCCccccCCCCCCCCCCCCcccccCCCCCcchheeeeeeeecc-------------c
Confidence 469999999999999999999999999999996 7778999999999999999999999986440 2
Q ss_pred cCCCCCCCCcCCCCCCCchhhcChhHHHHhH--H--------hhhcCcceec-----cccc-hhccccchHHHHHHH
Q psy9781 83 LFGEIDADEEVSPDTEDPEAVGDAGAKAAAS--E--------ATANGDVVRT-----STRA-WASACGYDPRKLFAK 143 (288)
Q Consensus 83 lF~~~~~~~~~~~~~~dp~~~~~~~~~~~~~--~--------~~~~~~~~~~-----~~~~-~~~~c~~~a~~~f~~ 143 (288)
-+ .....+.+||++++|.++++..+ . ..+++.++++ +|++ .+..|..++.|+...
T Consensus 187 ~~------~~~~~~~d~~~~~~~i~~~a~~ra~~f~i~~~~~~~~~~v~~~iiPai~stnaiia~~~~~~~~k~~~~ 257 (291)
T cd01488 187 EF------PFVPLDGDDPEHIEWLYQKALERAAQFNISGVTYSLTQGVVKRIIPAVASTNAIIAAACCLEALKIATD 257 (291)
T ss_pred cc------CCCcCCCCCHHHHHHHHHHHHHHHHHcCCCcccHHHHhhhHheeeCccCchHHHHHHHHHHHHHHHHhc
Confidence 11 11235667899999888765443 1 1245666665 5555 777888877776653
No 8
>KOG2015|consensus
Probab=99.83 E-value=3.5e-21 Score=179.91 Aligned_cols=130 Identities=36% Similarity=0.584 Sum_probs=101.4
Q ss_pred CCeeecccCCCCceeEEEeCCCCCCCcCcCC--CCCCCCCCCCCCCCCCCchhHHHHHHHHhhhcCCCCchHHhhhcccC
Q psy9781 7 VPLIESGTAGYEGQVELIKKGETKCYECDPK--PAAKTYPGCTIRNTPSEPIHCIVWAKHLFNLEGSAPGLLVLAQGQLF 84 (288)
Q Consensus 7 ~PLIesGt~G~~Gqv~viiP~~T~cy~c~~~--~~~~~~P~CTir~~P~~p~HcI~WAk~lF~~~~~~~~~~~~~~~~lF 84 (288)
+|||||||+|||||+.||+|+.|.|++|..+ |++.+||+|||.|+|..|+|||+|++-+-+ +....|
T Consensus 165 iPlIDGGtEG~KG~arvI~Pg~TaCieCtldlyppqvs~P~CTiAntPRlpEHciEyv~liqw-----------pe~~~~ 233 (422)
T KOG2015|consen 165 IPLIDGGTEGFKGHARVIYPGITACIECTLDLYPPQVSYPMCTIANTPRLPEHCIEYVKLIQW-----------PELNPF 233 (422)
T ss_pred eeeeecCcccccceeEEEecCccHHHHhHHhhcCcccCcccceecCCCCCchHhhhhhhhhcc-----------hhhCcc
Confidence 7999999999999999999999999999995 888999999999999999999999997544 233444
Q ss_pred CCCCCCCcCCCCCCCchhhcChhHHHHh--HHhh--------hcCcceec-----cccc-hhccccchHHHHHHHhhHHH
Q psy9781 85 GEIDADEEVSPDTEDPEAVGDAGAKAAA--SEAT--------ANGDVVRT-----STRA-WASACGYDPRKLFAKFFDAD 148 (288)
Q Consensus 85 ~~~~~~~~~~~~~~dp~~~~~~~~~~~~--~~~~--------~~~~~~~~-----~~~~-~~~~c~~~a~~~f~~~F~~~ 148 (288)
| ++.+.+||++++|..++..+ .+.+ ..|.++++ +|++ .|..|...|.++......--
T Consensus 234 g-------~~~~gdd~~hI~wi~er~~eRA~ef~I~gv~~~lvtGvvK~IIPaVasTNA~IAA~Ca~ea~Kl~t~~~~~~ 306 (422)
T KOG2015|consen 234 G-------VPLDGDDPEHIEWIVERSNERANEFNITGVTRRLVTGVVKRIIPAVASTNAVIAAVCATEALKLLTATDDPL 306 (422)
T ss_pred C-------CCCCCCCHHHHHHHHHHHHHHhhhcccccchHHhhhhhHHhhcchhhhhhHHHHHHHHHHHHHHHHhcchhh
Confidence 3 34567899999998765433 2222 35777776 5555 78899999999988765543
Q ss_pred HHHHHh
Q psy9781 149 IRYLIS 154 (288)
Q Consensus 149 I~~Ll~ 154 (288)
=++|..
T Consensus 307 ~Nym~~ 312 (422)
T KOG2015|consen 307 DNYMNY 312 (422)
T ss_pred hhheee
Confidence 344433
No 9
>PF10585 UBA_e1_thiolCys: Ubiquitin-activating enzyme active site ; InterPro: IPR019572 Ubiquitin-activating enzyme (E1 enzyme) activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin-conjugating enzymes (E2) []. This domain carries the last of five conserved cysteines that is part of the active site of the enzyme, responsible for ubiquitin thiolester complex formation, the active site being represented by the sequence motif PICTLKNFP []. Not all proteins in this entry contain a functional active site.; PDB: 3CMM_A 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B 2PX9_A 1Z7L_A 3GZN_D 3DBL_F 1R4N_H ....
Probab=99.79 E-value=5e-21 Score=131.81 Aligned_cols=41 Identities=61% Similarity=1.269 Sum_probs=36.6
Q ss_pred CCCCCCcCcCCCCCCCCCCCCCCCCCCCchhHHHHHHHHhh
Q psy9781 27 GETKCYECDPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLFN 67 (288)
Q Consensus 27 ~~T~cy~c~~~~~~~~~P~CTir~~P~~p~HcI~WAk~lF~ 67 (288)
|+|+||+|..++.++++|+|||||||++|+|||+|||++|+
T Consensus 1 ~~Tecy~c~~~~~~~~~P~CTir~~P~~~~HcI~wAk~~f~ 41 (45)
T PF10585_consen 1 HVTECYECSPDPPEKSYPVCTIRNFPRTPEHCIEWAKDLFE 41 (45)
T ss_dssp TTS--TTCSGGGSSSSEEHHHHHTS-SSHHHHHHHHHHHHH
T ss_pred CccccccCCCCCCCCCCCcchhhcCCCCchHHHHHHHHHHH
Confidence 68999999999888889999999999999999999999999
No 10
>KOG2013|consensus
Probab=99.50 E-value=1.5e-15 Score=148.19 Aligned_cols=76 Identities=32% Similarity=0.556 Sum_probs=73.8
Q ss_pred HHHHHhhhcccCCCCCCCCCCCceeeehhhhhcccccceEeEEcCCCCCCCCChhhhcccCeEEEchhchhhhhhheeec
Q psy9781 208 VRELKTKFDVSRPGLDKSFYGDRLTVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRVSKFSALLLC 287 (288)
Q Consensus 208 ~s~L~rqf~~~~~~~~k~~~~~~l~fdd~~~~dFV~aaNLRA~~f~I~~~~~~~~~~~~f~~V~nALdn~~Ar~~~l~~~ 287 (288)
+|||||||+|+++|||++| +.++.+.+..|+|.+||+++|.+|.+.+|++.||+|||+|+|||||+.||.|++-+|
T Consensus 49 lSNLNRQFLFrkkhVgqsK----A~vA~~~v~~Fnpn~~l~~yhanI~e~~fnv~ff~qfdiV~NaLDNlaAR~yVNr~C 124 (603)
T KOG2013|consen 49 LSNLNRQFLFRKKHVGQSK----ATVAAKAVKQFNPNIKLVPYHANIKEPKFNVEFFRQFDIVLNALDNLAARRYVNRMC 124 (603)
T ss_pred ccchhhhheeehhhcCchH----HHHHHHHHHHhCCCCceEeccccccCcchHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 7999999999999999997 889999999999999999999999999999999999999999999999999999988
No 11
>KOG2012|consensus
Probab=98.69 E-value=2.5e-09 Score=110.44 Aligned_cols=76 Identities=28% Similarity=0.300 Sum_probs=69.5
Q ss_pred HHHHHhhhcccCCCCCCCCCCCceeeehhhhhcccccceEeEEcCCCCC---CCCChhhhcccCeEEEchhchhhhhhhe
Q psy9781 208 VRELKTKFDVSRPGLDKSFYGDRLTVARNSALNFNPDANIVAHHTSIIS---ADFGVNYFKQFTLVMNALDNRVSKFSAL 284 (288)
Q Consensus 208 ~s~L~rqf~~~~~~~~k~~~~~~l~fdd~~~~dFV~aaNLRA~~f~I~~---~~~~~~~~~~f~~V~nALdn~~Ar~~~l 284 (288)
.|||||||+||.++|||.| .+.+..+++.++|.-||.|+...+.+ ..|+.+||...|+|+|||||++||+|+=
T Consensus 472 kSNLnRQFLFR~~dVgk~K----Se~AA~A~~~mNp~l~I~a~~~rvgpeTE~If~D~Ff~~ld~VanALDNVdAR~YvD 547 (1013)
T KOG2012|consen 472 KSNLNRQFLFRPWDVGKPK----SEVAAAAARGMNPDLNIIALQNRVGPETEHIFNDEFFENLDGVANALDNVDARRYVD 547 (1013)
T ss_pred hccccceeeccccccCchH----HHHHHHHHHhcCCCceeeehhhccCcccccccchhHHhhhHHHHHhhcchhhhhhhh
Confidence 5899999999999999997 88888999999999999999999974 3899999999999999999999999975
Q ss_pred eec
Q psy9781 285 LLC 287 (288)
Q Consensus 285 ~~~ 287 (288)
==|
T Consensus 548 ~RC 550 (1013)
T KOG2012|consen 548 RRC 550 (1013)
T ss_pred hhh
Confidence 444
No 12
>KOG2015|consensus
Probab=98.61 E-value=1.4e-08 Score=95.94 Aligned_cols=71 Identities=20% Similarity=0.309 Sum_probs=65.6
Q ss_pred HHHHHHhhhcccCCCCCCCCCCCceeeehhhhhcccccceEeEEcCCCCCCCCChhhhcccCeEEEchhchhhhhhh
Q psy9781 207 SVRELKTKFDVSRPGLDKSFYGDRLTVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRVSKFSA 283 (288)
Q Consensus 207 s~s~L~rqf~~~~~~~~k~~~~~~l~fdd~~~~dFV~aaNLRA~~f~I~~~~~~~~~~~~f~~V~nALdn~~Ar~~~ 283 (288)
.++||||||+|++.++|++| .+++++..+.-+|.+++..|...|. +++.+|+++|++|+-+||+|.||+.-
T Consensus 76 d~sNLNRQFLF~~~DiG~pK----AqvAA~fvn~Rvp~~~v~~h~~kIq--d~~~~FYk~F~~iicGLDsIeaRRwI 146 (422)
T KOG2015|consen 76 DLSNLNRQFLFRESDIGEPK----AQVAAEFVNRRVPGCVVVPHRQKIQ--DKPISFYKRFDLIICGLDSIEARRWI 146 (422)
T ss_pred ecccchhhhcccccccCchh----HHHHHHHHHhhCCCcEEeeeecchh--cCCHHHHhhhceEEecccchhHHHHH
Confidence 37999999999999999997 8888888888899999999999997 79999999999999999999999863
No 13
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=98.46 E-value=3.6e-08 Score=90.08 Aligned_cols=76 Identities=24% Similarity=0.385 Sum_probs=67.0
Q ss_pred HHHHHhhhcccCCCCCCCCCCCceeeehhhhhcccccceEeEEcCCCCC-CCCChhhhcccCeEEEchhchhhhhhheee
Q psy9781 208 VRELKTKFDVSRPGLDKSFYGDRLTVARNSALNFNPDANIVAHHTSIIS-ADFGVNYFKQFTLVMNALDNRVSKFSALLL 286 (288)
Q Consensus 208 ~s~L~rqf~~~~~~~~k~~~~~~l~fdd~~~~dFV~aaNLRA~~f~I~~-~~~~~~~~~~f~~V~nALdn~~Ar~~~l~~ 286 (288)
.+||+|||+++.+++|++| .+.+.+...+++|..++.++...|.+ .+++..++++||+|++|+||..||.+..-.
T Consensus 36 ~sNLnRQflf~~~dvGk~K----a~va~~~l~~~np~v~i~~~~~~i~~~~~~~~~f~~~~DvVi~a~Dn~~aR~~ln~~ 111 (234)
T cd01484 36 VSNLNRQFLFRPKDIGRPK----SEVAAEAVNDRNPNCKVVPYQNKVGPEQDFNDTFFEQFHIIVNALDNIIARRYVNGM 111 (234)
T ss_pred chhhccccCCChhhCChHH----HHHHHHHHHHHCCCCEEEEEeccCChhhhchHHHHhCCCEEEECCCCHHHHHHHHHH
Confidence 5899999999999999997 67767888899999999999999965 377889999999999999999999987655
Q ss_pred c
Q psy9781 287 C 287 (288)
Q Consensus 287 ~ 287 (288)
|
T Consensus 112 c 112 (234)
T cd01484 112 L 112 (234)
T ss_pred H
Confidence 5
No 14
>PF02134 UBACT: Repeat in ubiquitin-activating (UBA) protein; InterPro: IPR000127 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme is responsible for activating ubiquitin, the first step in ubiquitinylation. The E1 enzyme hydrolyses ATP and adenylates the C-terminal glycine residue of ubiquitin, and then links this residue to the active site cysteine of E1, yielding a ubiquitin-thioester and free AMP. To be fully active, E1 must non-covalently bind to and adenylate a second ubiquitin molecule. The E1 enzyme can then transfer the thioester-linked ubiquitin molecule to a cysteine residue on the ubiquitin-conjugating enzyme, E2, in an ATP-dependent reaction. This domain is found 2 times in each member of the ubiquitin activating enzymes and is located downstream of the active site cysteine [].; GO: 0005524 ATP binding, 0008641 small protein activating enzyme activity, 0006464 protein modification process; PDB: 1Z7L_A 3CMM_A 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H ....
Probab=98.28 E-value=2.7e-08 Score=73.99 Aligned_cols=52 Identities=15% Similarity=0.143 Sum_probs=37.0
Q ss_pred ee--hhhhhcccc-cceEeEEcCCCCCCCC-ChhhhcccCeEEEchhchhhhhhheee
Q psy9781 233 VA--RNSALNFNP-DANIVAHHTSIISADF-GVNYFKQFTLVMNALDNRVSKFSALLL 286 (288)
Q Consensus 233 fd--d~~~~dFV~-aaNLRA~~f~I~~~~~-~~~~~~~f~~V~nALdn~~Ar~~~l~~ 286 (288)
|| |+.|++||. +|||||.+|||++.++ .++.+.+ +|+|++.++.|.++|+..
T Consensus 2 Fd~dd~~h~~fI~a~anLrA~~f~I~~~~~~~~~~i~~--~iIP~~~~t~~iva~~~~ 57 (67)
T PF02134_consen 2 FDKDDPLHLDFIYAAANLRAQNFGIPPLDREEIKKIAG--NIIPAFAPTNAIVAGIAV 57 (67)
T ss_dssp --TTSHHHHHHHHHHHHHHHHHTT---S-HHHHHHHHT--TEE-B-HHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHhc--CcCCCcCCchhHHHHHHH
Confidence 55 899999999 9999999999995433 3555554 999999999999988753
No 15
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=98.22 E-value=1.6e-07 Score=88.37 Aligned_cols=72 Identities=19% Similarity=0.256 Sum_probs=63.5
Q ss_pred HHHHHhhhcccCCCCCCCCCCCceeeehhhhhcccccceEeEEcCCCCCCCCChhhhcccCeEEEchhchhhhhhhee
Q psy9781 208 VRELKTKFDVSRPGLDKSFYGDRLTVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRVSKFSALL 285 (288)
Q Consensus 208 ~s~L~rqf~~~~~~~~k~~~~~~l~fdd~~~~dFV~aaNLRA~~f~I~~~~~~~~~~~~f~~V~nALdn~~Ar~~~l~ 285 (288)
++||+|||+++..++|++| .+.+.+...+++|..++.++.-.|.+ ++.+|+++||+|+.|+||+.||.+..-
T Consensus 36 ~SNLnRQfLf~~~dIGk~K----Aevaa~~l~~~np~v~I~~~~~~i~~--~~~~f~~~fdvVi~alDn~~aR~~in~ 107 (291)
T cd01488 36 VSNLNRQFLFREKDIGKPK----AEVAAKFVNDRVPGVNVTPHFGKIQD--KDEEFYRQFNIIICGLDSIEARRWING 107 (291)
T ss_pred ccccCcCcccChHHcchHH----HHHHHHHHHHHCCCCEEEEEecccCc--hhHHHhcCCCEEEECCCCHHHHHHHHH
Confidence 5899999999999999997 67777888889999999999998874 678899999999999999999987543
No 16
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=98.21 E-value=2.2e-07 Score=91.81 Aligned_cols=76 Identities=24% Similarity=0.287 Sum_probs=66.8
Q ss_pred HHHHHhhhcccCCCCCCCCCCCceeeehhhhhcccccceEeEEcCCCCC---CCCChhhhcccCeEEEchhchhhhhhhe
Q psy9781 208 VRELKTKFDVSRPGLDKSFYGDRLTVARNSALNFNPDANIVAHHTSIIS---ADFGVNYFKQFTLVMNALDNRVSKFSAL 284 (288)
Q Consensus 208 ~s~L~rqf~~~~~~~~k~~~~~~l~fdd~~~~dFV~aaNLRA~~f~I~~---~~~~~~~~~~f~~V~nALdn~~Ar~~~l 284 (288)
.+||+|||+++.+++|++| .+.+.+...+.+|..+++++...|.+ ..|+.++|.+||+|++|+||+.||.+..
T Consensus 41 ~SNLnRQfLf~~~dIGk~K----a~vAa~~l~~lNp~v~I~a~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~vn 116 (435)
T cd01490 41 KSNLNRQFLFRPHDVGKPK----SEVAAAAVKAMNPDLKITALQNRVGPETEHIFNDEFWEKLDGVANALDNVDARMYVD 116 (435)
T ss_pred ccccCcCccCChhHcCcHH----HHHHHHHHHHHCCCCEEEEEecccChhhhhhhhHHHhcCCCEEEECCCCHHHHHHHH
Confidence 6899999999999999997 66667788889999999999999964 2577899999999999999999999877
Q ss_pred eec
Q psy9781 285 LLC 287 (288)
Q Consensus 285 ~~~ 287 (288)
-.|
T Consensus 117 ~~C 119 (435)
T cd01490 117 RRC 119 (435)
T ss_pred HHH
Confidence 665
No 17
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=98.20 E-value=3e-07 Score=87.39 Aligned_cols=76 Identities=39% Similarity=0.643 Sum_probs=68.1
Q ss_pred HHHHHhhhcccCCCCCCCCCCCceeeehhhhhcccccceEeEEcCCCCCCCCChhhhcccCeEEEchhchhhhhhheeec
Q psy9781 208 VRELKTKFDVSRPGLDKSFYGDRLTVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRVSKFSALLLC 287 (288)
Q Consensus 208 ~s~L~rqf~~~~~~~~k~~~~~~l~fdd~~~~dFV~aaNLRA~~f~I~~~~~~~~~~~~f~~V~nALdn~~Ar~~~l~~~ 287 (288)
.+||+|||+++.+++|++| .+.+.+...++++..++.++...|.+..++.+++.+||+|++|+||.+||.+..-+|
T Consensus 36 ~sNLnRQflf~~~dVGk~K----aevaa~~l~~lNp~v~V~~~~~~i~~~~~~~~f~~~~DvVv~a~Dn~~ar~~in~~c 111 (312)
T cd01489 36 LSNLNRQFLFRKKHVGKSK----AQVAKEAVLSFNPNVKIVAYHANIKDPDFNVEFFKQFDLVFNALDNLAARRHVNKMC 111 (312)
T ss_pred hhhcCcCccCChhHcCcHH----HHHHHHHHHHHCCCCeEEEEeccCCCccchHHHHhcCCEEEECCCCHHHHHHHHHHH
Confidence 6899999999999999986 666677888889989999999999877788899999999999999999999877666
No 18
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=97.97 E-value=1.1e-06 Score=94.70 Aligned_cols=77 Identities=23% Similarity=0.352 Sum_probs=67.6
Q ss_pred HHHHHhhhcccCCCCCCCCCCCceeeehhhhhcccccceEeEEcCCCCC---CCCChhhhcccCeEEEchhchhhhhhhe
Q psy9781 208 VRELKTKFDVSRPGLDKSFYGDRLTVARNSALNFNPDANIVAHHTSIIS---ADFGVNYFKQFTLVMNALDNRVSKFSAL 284 (288)
Q Consensus 208 ~s~L~rqf~~~~~~~~k~~~~~~l~fdd~~~~dFV~aaNLRA~~f~I~~---~~~~~~~~~~f~~V~nALdn~~Ar~~~l 284 (288)
.+||+|||+++.+++|++| .+.+.+.+..++|..+|.++.-.|.+ ..|+.+||.+||+|++|+||+.||.+..
T Consensus 461 ~SNLnRQfLf~~~dIGk~K----a~vaa~~l~~~Np~v~I~~~~~~v~~~~e~i~~~~f~~~~dvVi~alDn~~aR~~vn 536 (1008)
T TIGR01408 461 KSNLNRQFLFRPHHIGKPK----SYTAADATLKINPQIKIDAHQNRVGPETETIFNDEFYEKLDVVINALDNVEARRYVD 536 (1008)
T ss_pred ccccCcCcCCChhHcCcHH----HHHHHHHHHHHCCCCEEEEEEeecChhhhhhhhHHHhhCCCEEEECCCCHHHHHHHH
Confidence 6999999999999999997 67777888899999999999999964 2577889999999999999999999887
Q ss_pred eecC
Q psy9781 285 LLCV 288 (288)
Q Consensus 285 ~~~~ 288 (288)
-.|+
T Consensus 537 ~~c~ 540 (1008)
T TIGR01408 537 SRCL 540 (1008)
T ss_pred HHHH
Confidence 6663
No 19
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=97.91 E-value=7.4e-06 Score=72.89 Aligned_cols=50 Identities=32% Similarity=0.634 Sum_probs=42.1
Q ss_pred CcccCCCCeeecccCCCCceeEEEeCC-CCCCCcCcCCCCCCCCCCCCCCC
Q psy9781 1 MCLASEVPLIESGTAGYEGQVELIKKG-ETKCYECDPKPAAKTYPGCTIRN 50 (288)
Q Consensus 1 ~Cv~~~~PLIesGt~G~~Gqv~viiP~-~T~cy~c~~~~~~~~~P~CTir~ 50 (288)
+|..+++|+|++|+.|+.|++.++.|+ .|+||+|.+...+...|.|+...
T Consensus 131 ~~~~~~ip~i~~~~~g~~G~~~~~~p~~~~~c~~c~~~~~~~~~~~~~~~~ 181 (202)
T TIGR02356 131 ACVALGTPLISAAVVGFGGQLMVFDPGGEGPCLRCLFPDIADTGPSCATAG 181 (202)
T ss_pred HHHHcCCCEEEEEeccCeEEEEEEeCCCCCCChhhcCCCCcccCCCCccCC
Confidence 478899999999999999999999998 89999999865444567776544
No 20
>PRK07411 hypothetical protein; Validated
Probab=97.74 E-value=1.4e-05 Score=78.04 Aligned_cols=48 Identities=19% Similarity=0.313 Sum_probs=40.9
Q ss_pred CcccCCCCeeecccCCCCceeEEEeCCCCCCCcCcCC--CCCCCCCCCCC
Q psy9781 1 MCLASEVPLIESGTAGYEGQVELIKKGETKCYECDPK--PAAKTYPGCTI 48 (288)
Q Consensus 1 ~Cv~~~~PLIesGt~G~~Gqv~viiP~~T~cy~c~~~--~~~~~~P~CTi 48 (288)
+|+.+++|+|.+|+.|+.||+.++.|+.|+||+|.++ |++...|.|.-
T Consensus 148 ~~~~~~~p~v~~~~~g~~g~~~v~~~~~~~c~~c~~~~~~~~~~~~~c~~ 197 (390)
T PRK07411 148 ACVLLNKPNVYGSIFRFEGQATVFNYEGGPNYRDLYPEPPPPGMVPSCAE 197 (390)
T ss_pred HHHHcCCCEEEEEEccCEEEEEEECCCCCCChHHhcCCCCCcccCCCCcc
Confidence 4899999999999999999999998889999999985 34455676764
No 21
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=97.72 E-value=1.3e-05 Score=73.89 Aligned_cols=46 Identities=15% Similarity=0.264 Sum_probs=40.3
Q ss_pred CCCeeeccc--------CCC-----CceeEEEeCCCCCCCcCcCCC---CCCCCCCCCCCCC
Q psy9781 6 EVPLIESGT--------AGY-----EGQVELIKKGETKCYECDPKP---AAKTYPGCTIRNT 51 (288)
Q Consensus 6 ~~PLIesGt--------~G~-----~Gqv~viiP~~T~cy~c~~~~---~~~~~P~CTir~~ 51 (288)
.+|+||+|+ .|. +|++++++|++|+||.|..+| ++.+.|+||+..-
T Consensus 134 ~~~~ld~Gn~~~~gqv~~g~i~~~~k~~~~~~lP~vte~y~~~~d~~~~~~~~~PsCsla~a 195 (244)
T TIGR03736 134 YAYWLDLGNRADDGQVILGQVPSRAKGENRLRLPHVGELFPELIDPSVDPDDDRPSCSLAEA 195 (244)
T ss_pred ccceecccCCCCCCcEEEEecccccccCCceecCCchhhCcccccCccCCCCCCCCchHHHH
Confidence 489999999 555 788899999999999999987 6789999999763
No 22
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=97.67 E-value=1.9e-05 Score=76.24 Aligned_cols=51 Identities=18% Similarity=0.363 Sum_probs=43.5
Q ss_pred CcccCCCCeeecccCCCCceeEEEeCCCCCCCcCcCC--CCCCCCCCCCCCCC
Q psy9781 1 MCLASEVPLIESGTAGYEGQVELIKKGETKCYECDPK--PAAKTYPGCTIRNT 51 (288)
Q Consensus 1 ~Cv~~~~PLIesGt~G~~Gqv~viiP~~T~cy~c~~~--~~~~~~P~CTir~~ 51 (288)
+|+.+++|+|.+|+.|+.||+.++.|+.++||+|.+. |++...|.|.....
T Consensus 138 ~c~~~~ip~v~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~gv 190 (355)
T PRK05597 138 AAARLGIPHVWASILGFDAQLSVFHAGHGPIYEDLFPTPPPPGSVPSCSQAGV 190 (355)
T ss_pred HHHHcCCCEEEEEEecCeEEEEEEcCCCCCCHHHhCCCCCCccCCCCccccCc
Confidence 4899999999999999999999999999999999984 44556788866554
No 23
>PRK08328 hypothetical protein; Provisional
Probab=97.54 E-value=2.8e-05 Score=70.63 Aligned_cols=37 Identities=27% Similarity=0.289 Sum_probs=35.0
Q ss_pred CcccCCCCeeecccCCCCceeEEEeCCCCCCCcCcCC
Q psy9781 1 MCLASEVPLIESGTAGYEGQVELIKKGETKCYECDPK 37 (288)
Q Consensus 1 ~Cv~~~~PLIesGt~G~~Gqv~viiP~~T~cy~c~~~ 37 (288)
+|..+++|+|++|+.|+.|++.+++|+.|+||+|.++
T Consensus 138 ~~~~~~ip~i~g~~~g~~G~v~~~~p~~~~c~~~~~~ 174 (231)
T PRK08328 138 YAHKKGIPLVHGAVEGTYGQVTTIVPGKTKRLREIFP 174 (231)
T ss_pred HHHHcCCCEEEEeeccCEEEEEEECCCCCCCHHHhCC
Confidence 3889999999999999999999999999999999985
No 24
>PRK08223 hypothetical protein; Validated
Probab=97.49 E-value=8.6e-05 Score=69.93 Aligned_cols=51 Identities=12% Similarity=0.176 Sum_probs=42.7
Q ss_pred CcccCCCCeeecccCCCCceeEEEeCCCCCCCcCcCC----CCC---------CCCCCCCCCCCC
Q psy9781 1 MCLASEVPLIESGTAGYEGQVELIKKGETKCYECDPK----PAA---------KTYPGCTIRNTP 52 (288)
Q Consensus 1 ~Cv~~~~PLIesGt~G~~Gqv~viiP~~T~cy~c~~~----~~~---------~~~P~CTir~~P 52 (288)
.|+.++||+|.+++.|+.||++++.|+ ++||+|.++ +++ +..|.|.-..+.
T Consensus 139 ~c~~~~iP~V~~~~~g~~gqv~v~~p~-~p~~~~~f~~~~~~~~~~~~~~~~~~~~p~c~~~gvl 202 (287)
T PRK08223 139 ACQQRGIPALTAAPLGMGTALLVFDPG-GMSFDDYFDLSDGMNEVEKAVRFLAGLAPSMLHRGYL 202 (287)
T ss_pred HHHHcCCCEEEEeccCCeEEEEEEcCC-CCchhhhcCCCCCCCchhhhcccCCcCCCccccCCcc
Confidence 489999999999999999999999997 899999884 222 567888777766
No 25
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=97.43 E-value=8.3e-05 Score=72.11 Aligned_cols=50 Identities=28% Similarity=0.631 Sum_probs=41.1
Q ss_pred CcccCCCCeeecccCCCCceeEEEeCCC----CCCCcCcCC--CCCCCCCCCCCCC
Q psy9781 1 MCLASEVPLIESGTAGYEGQVELIKKGE----TKCYECDPK--PAAKTYPGCTIRN 50 (288)
Q Consensus 1 ~Cv~~~~PLIesGt~G~~Gqv~viiP~~----T~cy~c~~~--~~~~~~P~CTir~ 50 (288)
+|+.+++|+|++|+.|+.||+.++.|+. |+||+|.+. +.....|.|..-.
T Consensus 245 ~~~~~~ip~i~~~~~g~~g~v~~~~p~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g 300 (376)
T PRK08762 245 ACVKLGKPLVYGAVFRFEGQVSVFDAGRQRGQAPCYRCLFPEPPPPELAPSCAEAG 300 (376)
T ss_pred HHHHcCCCEEEEEeccCEEEEEEEeCCCCCCCCCCHhhcCCCCCCcccCCCCccCC
Confidence 4889999999999999999999999987 899999974 3334456776543
No 26
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=97.40 E-value=0.00011 Score=67.22 Aligned_cols=37 Identities=41% Similarity=0.881 Sum_probs=34.8
Q ss_pred CcccCCCCeeecccCCCCceeEEEeCC-CCCCCcCcCC
Q psy9781 1 MCLASEVPLIESGTAGYEGQVELIKKG-ETKCYECDPK 37 (288)
Q Consensus 1 ~Cv~~~~PLIesGt~G~~Gqv~viiP~-~T~cy~c~~~ 37 (288)
.|+.+++|||++|+.|+.||+.++.|+ .++||+|.++
T Consensus 140 ~~~~~~~pli~~~~~~~~g~~~~~~~~~~~~c~~~~~~ 177 (254)
T COG0476 140 ACVKLGIPLVHGGAIGFEGQVTVIIPGDKTPCYRCLFP 177 (254)
T ss_pred HHHHhCCCeEeeeeccceEEEEEEecCCCCCcccccCC
Confidence 388899999999999999999999999 5999999996
No 27
>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family. Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.
Probab=97.37 E-value=7e-05 Score=71.41 Aligned_cols=37 Identities=19% Similarity=0.212 Sum_probs=34.6
Q ss_pred CcccCCCCeeecccCCCCceeEEEeCCCCCCCcCcCC
Q psy9781 1 MCLASEVPLIESGTAGYEGQVELIKKGETKCYECDPK 37 (288)
Q Consensus 1 ~Cv~~~~PLIesGt~G~~Gqv~viiP~~T~cy~c~~~ 37 (288)
.|+.+++|||.|+..|+.||+.+++|+.|+||+|.+.
T Consensus 173 ac~~~~~PlV~gav~g~~Gqv~~~~P~~t~C~~Cl~~ 209 (318)
T TIGR03603 173 LSKETKKPNTIAFIDGPFVFITCTLPPETGCFECLER 209 (318)
T ss_pred HHHHHCCCEEEEEEccCEEEEEEEeCCCCCcHHHccc
Confidence 3889999999999999999999999999999999964
No 28
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=97.26 E-value=0.00015 Score=69.63 Aligned_cols=37 Identities=27% Similarity=0.452 Sum_probs=35.0
Q ss_pred CcccCCCCeeecccCCCCceeEEEeCCCCCCCcCcCC
Q psy9781 1 MCLASEVPLIESGTAGYEGQVELIKKGETKCYECDPK 37 (288)
Q Consensus 1 ~Cv~~~~PLIesGt~G~~Gqv~viiP~~T~cy~c~~~ 37 (288)
+|..+++|+|.+|+.|+.|++.+++|+.|+||+|.+.
T Consensus 136 ~~~~~~ip~i~~~~~g~~G~~~~~~P~~tpC~~Cl~~ 172 (338)
T PRK12475 136 LSQKYNIPWIYGGCVGSYGVTYTIIPGKTPCLRCLME 172 (338)
T ss_pred HHHHcCCCEEEEEecccEEEEEEECCCCCCCHHHhcC
Confidence 4788999999999999999999999999999999985
No 29
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=97.22 E-value=0.00019 Score=70.11 Aligned_cols=48 Identities=19% Similarity=0.280 Sum_probs=39.1
Q ss_pred CcccCCCCeeecccCCCCceeEEEeC----CCCCCCcCcCC--CCCCCCCCCCC
Q psy9781 1 MCLASEVPLIESGTAGYEGQVELIKK----GETKCYECDPK--PAAKTYPGCTI 48 (288)
Q Consensus 1 ~Cv~~~~PLIesGt~G~~Gqv~viiP----~~T~cy~c~~~--~~~~~~P~CTi 48 (288)
+|+.+++|+|.+|+.|+.||+.++.+ +.++||+|.+. +....+|.|.-
T Consensus 152 ~~~~~~~p~v~~~~~g~~G~v~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~ 205 (392)
T PRK07878 152 AAVLAGKPYVWGSIYRFEGQASVFWEDAPDGLGLNYRDLYPEPPPPGMVPSCAE 205 (392)
T ss_pred HHHHcCCCEEEEEeccCEEEEEEEecCCCCCCCCeeeeecCCCCCccCCCCCcc
Confidence 48899999999999999999999874 37999999884 33455677754
No 30
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=97.21 E-value=0.00025 Score=65.05 Aligned_cols=37 Identities=30% Similarity=0.707 Sum_probs=34.0
Q ss_pred CcccCCCCeeecccCCCCceeEEEeCCC-CCCCcCcCC
Q psy9781 1 MCLASEVPLIESGTAGYEGQVELIKKGE-TKCYECDPK 37 (288)
Q Consensus 1 ~Cv~~~~PLIesGt~G~~Gqv~viiP~~-T~cy~c~~~ 37 (288)
.|..+++|+|++|+.|+.|++.++.|+. |+||+|.+.
T Consensus 142 ~~~~~~ip~v~~~~~g~~G~v~~~~~~~~~~c~~c~~~ 179 (245)
T PRK05690 142 ACFAAKKPLVSGAAIRMEGQVTVFTYQDDEPCYRCLSR 179 (245)
T ss_pred HHHHhCCEEEEeeeccCCceEEEEecCCCCceeeeccC
Confidence 3788999999999999999999999986 899999985
No 31
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=97.16 E-value=0.0003 Score=63.55 Aligned_cols=37 Identities=35% Similarity=0.734 Sum_probs=34.7
Q ss_pred CcccCCCCeeecccCCCCceeEEEeCCCCCCCcCcCC
Q psy9781 1 MCLASEVPLIESGTAGYEGQVELIKKGETKCYECDPK 37 (288)
Q Consensus 1 ~Cv~~~~PLIesGt~G~~Gqv~viiP~~T~cy~c~~~ 37 (288)
+|..+++|+|++|+.|+.|++.+++|+.|+||.|.+.
T Consensus 131 ~~~~~~ip~i~~g~~g~~g~v~~~~p~~~~c~~c~~~ 167 (228)
T cd00757 131 ACVKLGKPLVSGAVLGFEGQVTVFIPGEGPCYRCLFP 167 (228)
T ss_pred HHHHcCCCEEEEEeccCEEEEEEECCCCCCCccccCC
Confidence 3788999999999999999999999999999999884
No 32
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=97.07 E-value=0.00035 Score=67.12 Aligned_cols=37 Identities=24% Similarity=0.348 Sum_probs=34.8
Q ss_pred CcccCCCCeeecccCCCCceeEEEeCCCCCCCcCcCC
Q psy9781 1 MCLASEVPLIESGTAGYEGQVELIKKGETKCYECDPK 37 (288)
Q Consensus 1 ~Cv~~~~PLIesGt~G~~Gqv~viiP~~T~cy~c~~~ 37 (288)
.|+.+++|+|.+|+.|+.|++.+++|+.|+||+|.+.
T Consensus 136 ~~~~~~iP~i~~~~~g~~G~~~~~~p~~~pC~~Cl~~ 172 (339)
T PRK07688 136 AAQKYGIPWIYGACVGSYGLSYTIIPGKTPCLRCLLQ 172 (339)
T ss_pred HHHHhCCCEEEEeeeeeeeEEEEECCCCCCCeEeecC
Confidence 3889999999999999999999999999999999885
No 33
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=96.99 E-value=0.00042 Score=67.43 Aligned_cols=49 Identities=14% Similarity=0.293 Sum_probs=39.9
Q ss_pred CcccCCCCeeecccCCCCceeEEEeCCC---CCCCcCcCC--CCCCCCCCCCCC
Q psy9781 1 MCLASEVPLIESGTAGYEGQVELIKKGE---TKCYECDPK--PAAKTYPGCTIR 49 (288)
Q Consensus 1 ~Cv~~~~PLIesGt~G~~Gqv~viiP~~---T~cy~c~~~--~~~~~~P~CTir 49 (288)
+|+.+++|+|.+|+.|+.||+.++.|+. ++||+|.+. ++....|.|...
T Consensus 151 ~~~~~~iP~v~~~~~g~~G~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~c~~~ 204 (370)
T PRK05600 151 AAEITGTPLVWGTVLRFHGELAVFNSGPDHRGVGLRDLFPEQPSGDSIPDCATA 204 (370)
T ss_pred HHHHcCCCEEEEEEecCEEEEEEEecCCCCCCCCcHhhCCCCCccccCCCCccC
Confidence 4889999999999999999999998864 789999984 334556778433
No 34
>KOG2017|consensus
Probab=96.93 E-value=0.00039 Score=66.90 Aligned_cols=46 Identities=24% Similarity=0.609 Sum_probs=38.7
Q ss_pred cccCCCCeeecccCCCCceeEEEeCCCCCCCcCcCC--CCCCCCCCCC
Q psy9781 2 CLASEVPLIESGTAGYEGQVELIKKGETKCYECDPK--PAAKTYPGCT 47 (288)
Q Consensus 2 Cv~~~~PLIesGt~G~~Gqv~viiP~~T~cy~c~~~--~~~~~~P~CT 47 (288)
||.+|||||-+..+|+.||.+|+--...+||+|.|+ |++..+..|.
T Consensus 177 CVlLgkpLVSgSaLr~EGQLtvYny~~GPCYRClFP~Ppp~~~vt~C~ 224 (427)
T KOG2017|consen 177 CVLLGKPLVSGSALRWEGQLTVYNYNNGPCYRCLFPNPPPPEAVTNCA 224 (427)
T ss_pred HHHcCCcccccccccccceeEEeecCCCceeeecCCCCcChHHhcccc
Confidence 999999999999999999999998888999999995 3334444454
No 35
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=96.76 E-value=0.00039 Score=64.11 Aligned_cols=70 Identities=13% Similarity=0.145 Sum_probs=50.8
Q ss_pred HHHHHhhhcccCCCCCCCCCCCceeeehhhhhcccccceEeEEcCCCCCCCCChhhhcccCeEEEchhchhhhhhheeec
Q psy9781 208 VRELKTKFDVSRPGLDKSFYGDRLTVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRVSKFSALLLC 287 (288)
Q Consensus 208 ~s~L~rqf~~~~~~~~k~~~~~~l~fdd~~~~dFV~aaNLRA~~f~I~~~~~~~~~~~~f~~V~nALdn~~Ar~~~l~~~ 287 (288)
.+||+||+ |...++|++| .+...+....++ ..++.++...+.+. .++.++|+|++|+||+.||.+-.-.|
T Consensus 58 ~sNLnRQl-f~~~dVG~~K----a~v~~~ri~~~~-~~~i~a~~~~~~~~----~~~~~~DiVi~avDn~~aR~~l~~~~ 127 (244)
T TIGR03736 58 EANVGRQA-FYPADVGQNK----AIVLVNRLNQAM-GTDWTAHPERVERS----STLHRPDIVIGCVDNRAARLAILRAF 127 (244)
T ss_pred cchhhccc-CChhHCCcHH----HHHHHHHHHhcc-CceEEEEEeeeCch----hhhcCCCEEEECCCCHHHHHHHHHHH
Confidence 57999995 7778899997 444433333333 57888888777652 33568999999999999998765443
No 36
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=96.72 E-value=0.00038 Score=66.05 Aligned_cols=76 Identities=16% Similarity=0.065 Sum_probs=61.9
Q ss_pred HHHHHhhhcccCCC--CCCCCCCCceeeehhhhhcccccceEeEEcCCCCCC--------------CC--ChhhhcccCe
Q psy9781 208 VRELKTKFDVSRPG--LDKSFYGDRLTVARNSALNFNPDANIVAHHTSIISA--------------DF--GVNYFKQFTL 269 (288)
Q Consensus 208 ~s~L~rqf~~~~~~--~~k~~~~~~l~fdd~~~~dFV~aaNLRA~~f~I~~~--------------~~--~~~~~~~f~~ 269 (288)
.+||+||+++...+ +|+.| .+.+.+...+++|..++.++...||.. ++ -.+++++.|+
T Consensus 36 ~sNL~RQ~L~~~~D~~iGk~K----a~aaa~~L~~iNP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~Dv 111 (307)
T cd01486 36 YSNPVRQSLFTFEDCKGGKPK----AEAAAERLKEIFPSIDATGIVLSIPMPGHPISESEVPSTLKDVKRLEELIKDHDV 111 (307)
T ss_pred cccCCcccccccchhhcCccH----HHHHHHHHHHHCCCcEEEEeeeeccccccccccccccccccCHHHHHHHHhhCCE
Confidence 57999999998888 88886 566678888999999999999988532 11 1467999999
Q ss_pred EEEchhchhhhhhheeec
Q psy9781 270 VMNALDNRVSKFSALLLC 287 (288)
Q Consensus 270 V~nALdn~~Ar~~~l~~~ 287 (288)
|+.++||.++|..-.++|
T Consensus 112 V~d~tDn~esR~L~~~~~ 129 (307)
T cd01486 112 IFLLTDSRESRWLPTLLS 129 (307)
T ss_pred EEECCCCHHHHHHHHHHH
Confidence 999999999998766665
No 37
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=96.71 E-value=0.0012 Score=60.46 Aligned_cols=37 Identities=32% Similarity=0.764 Sum_probs=32.2
Q ss_pred CcccCCCCeeecccCCCCceeEEEe-CCCCCCCcCcCC
Q psy9781 1 MCLASEVPLIESGTAGYEGQVELIK-KGETKCYECDPK 37 (288)
Q Consensus 1 ~Cv~~~~PLIesGt~G~~Gqv~vii-P~~T~cy~c~~~ 37 (288)
+|..+++|+|++|+.|+.||+.++. +..++||+|...
T Consensus 134 ~~~~~~ip~v~~~~~g~~G~v~~~~~~~~~~c~~C~~~ 171 (240)
T TIGR02355 134 QCFAAKVPLVSGAAIRMEGQVSVFTYQDGEPCYRCLSR 171 (240)
T ss_pred HHHHcCCCEEEEEecccEeEEEEEecCCCCCccccccc
Confidence 4889999999999999999999876 446899999864
No 38
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=96.57 E-value=0.00051 Score=70.98 Aligned_cols=77 Identities=13% Similarity=0.147 Sum_probs=63.5
Q ss_pred HHHHHhhhcccCCCC---CCCCCCCceeeehhhhhcccccceEeEEcCCCCCC--CC--------------ChhhhcccC
Q psy9781 208 VRELKTKFDVSRPGL---DKSFYGDRLTVARNSALNFNPDANIVAHHTSIISA--DF--------------GVNYFKQFT 268 (288)
Q Consensus 208 ~s~L~rqf~~~~~~~---~k~~~~~~l~fdd~~~~dFV~aaNLRA~~f~I~~~--~~--------------~~~~~~~f~ 268 (288)
+|||+||++++.+++ |+.| .+.+.+...+++|..++.++...||.. .. -.+.+.++|
T Consensus 375 ~SNL~RQ~Lf~~~Dv~~~Gk~K----A~aAa~~Lk~InP~v~i~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~~~D 450 (664)
T TIGR01381 375 YSNPVRQSLSNFEDCLLGGRGK----AETAQKALKRIFPSIQATGHRLTVPMPGHPIDEKDVPELEKDIARLEQLIKDHD 450 (664)
T ss_pred CCccccccccchhhhhhcCCcH----HHHHHHHHHHHCCCcEEEEeeeeeccccccCCchhhhhccccHHHHHHHHhhCC
Confidence 689999999998888 8886 666678888999999999999998532 11 135899999
Q ss_pred eEEEchhchhhhhhheeecC
Q psy9781 269 LVMNALDNRVSKFSALLLCV 288 (288)
Q Consensus 269 ~V~nALdn~~Ar~~~l~~~~ 288 (288)
+|+.++||.++|..-.++|+
T Consensus 451 vV~d~tDn~esR~L~n~~c~ 470 (664)
T TIGR01381 451 VVFLLLDSREARWLPTVLCS 470 (664)
T ss_pred EEEECCCCHHHHHHHHHHHH
Confidence 99999999999988777774
No 39
>PRK08223 hypothetical protein; Validated
Probab=96.45 E-value=0.00076 Score=63.59 Aligned_cols=75 Identities=15% Similarity=0.214 Sum_probs=59.7
Q ss_pred HHHHHhhhcccCCCCCCCCCCCceeeehhhhhcccccceEeEEcCCCCCCCCChhhhcccCeEEEchhch--hhhhhhee
Q psy9781 208 VRELKTKFDVSRPGLDKSFYGDRLTVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNR--VSKFSALL 285 (288)
Q Consensus 208 ~s~L~rqf~~~~~~~~k~~~~~~l~fdd~~~~dFV~aaNLRA~~f~I~~~~~~~~~~~~f~~V~nALdn~--~Ar~~~l~ 285 (288)
.+||+||+++...++|+.| .+.+.+...+.+|..++.++.-.|.+.. -.+++.++|+|+.++||. .+|....-
T Consensus 64 ~SNLnRQ~l~~~~diG~~K----ve~a~~~l~~iNP~v~V~~~~~~l~~~n-~~~ll~~~DlVvD~~D~~~~~~r~~ln~ 138 (287)
T PRK08223 64 LRNFNRQAGAMMSTLGRPK----AEVLAEMVRDINPELEIRAFPEGIGKEN-ADAFLDGVDVYVDGLDFFEFDARRLVFA 138 (287)
T ss_pred hhccccccCcChhHCCCcH----HHHHHHHHHHHCCCCEEEEEecccCccC-HHHHHhCCCEEEECCCCCcHHHHHHHHH
Confidence 6899999999999999986 5665677888999999999998887532 246789999999999985 66655443
Q ss_pred ec
Q psy9781 286 LC 287 (288)
Q Consensus 286 ~~ 287 (288)
.|
T Consensus 139 ~c 140 (287)
T PRK08223 139 AC 140 (287)
T ss_pred HH
Confidence 33
No 40
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=96.40 E-value=0.00082 Score=61.50 Aligned_cols=77 Identities=21% Similarity=0.302 Sum_probs=65.1
Q ss_pred HHHHHHhhhcccCCCCCCCCCCCceeeehhhhhcccccceEeEEcCCCCCCCCChhhhcccCeEEEchhchhhhhhheee
Q psy9781 207 SVRELKTKFDVSRPGLDKSFYGDRLTVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRVSKFSALLL 286 (288)
Q Consensus 207 s~s~L~rqf~~~~~~~~k~~~~~~l~fdd~~~~dFV~aaNLRA~~f~I~~~~~~~~~~~~f~~V~nALdn~~Ar~~~l~~ 286 (288)
.++||+||++++..++|+.| .+.+.+.....++-..+++++..+..... ..+++++|+|+.++||.++|...+..
T Consensus 66 ~~snL~rq~~~~~~dig~~K----a~~a~~~l~~ln~~v~v~~~~~~l~~~~~-~~~~~~~d~v~d~~dn~~~r~~iN~~ 140 (254)
T COG0476 66 ELSNLQRQFLFTEADVGKPK----AEVAAKALRKLNPLVEVVAYLERLDEENA-EELIAQFDVVLDCTDNFETRYLINDA 140 (254)
T ss_pred cccccCceeeecccccCCcH----HHHHHHHHHHhCCCCeEEEeecccChhhH-HHHhccCCEEEECCCCHHHHHHHHHH
Confidence 37899999999999999976 55555677888888899999999886555 78999999999999999999877665
Q ss_pred cC
Q psy9781 287 CV 288 (288)
Q Consensus 287 ~~ 288 (288)
|+
T Consensus 141 ~~ 142 (254)
T COG0476 141 CV 142 (254)
T ss_pred HH
Confidence 53
No 41
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=96.39 E-value=0.00094 Score=62.94 Aligned_cols=64 Identities=16% Similarity=0.213 Sum_probs=51.9
Q ss_pred CcccCCCCeeecccCCCCceeEEEeCCCCCCCcCcCC--CCCCCCCCCCCCCCCCCchhHHHHHHHHhh
Q psy9781 1 MCLASEVPLIESGTAGYEGQVELIKKGETKCYECDPK--PAAKTYPGCTIRNTPSEPIHCIVWAKHLFN 67 (288)
Q Consensus 1 ~Cv~~~~PLIesGt~G~~Gqv~viiP~~T~cy~c~~~--~~~~~~P~CTir~~P~~p~HcI~WAk~lF~ 67 (288)
+|..+++|+|.+++.|+.|++.+.. .+||.|... .++.+.++|+|.+-+..++||+.=.++-|+
T Consensus 125 ~c~~~~ipfI~a~~~G~~G~vf~df---g~~f~~~d~~ge~p~~~~i~~I~~~~~g~V~~~~~~~h~l~ 190 (286)
T cd01491 125 FCHSPGIKFISADTRGLFGSIFCDF---GDEFTVYDPNGEEPKSGMISSISKDNPGVVTCLDETRHGFE 190 (286)
T ss_pred HHHHcCCEEEEEeccccEEEEEecC---CCeEEEeCCCCCcCCccceeeeecCCceEEEEECCcccCCc
Confidence 5889999999999999999999743 377777642 346788999999999999999866565454
No 42
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=96.28 E-value=0.0009 Score=59.54 Aligned_cols=75 Identities=15% Similarity=0.274 Sum_probs=58.3
Q ss_pred HHHHHhhhcccCCCCCCCCCCCceeeehhhhhcccccceEeEEcCCCCCCCCChhhhcccCeEEEchhchhhhhhheeec
Q psy9781 208 VRELKTKFDVSRPGLDKSFYGDRLTVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRVSKFSALLLC 287 (288)
Q Consensus 208 ~s~L~rqf~~~~~~~~k~~~~~~l~fdd~~~~dFV~aaNLRA~~f~I~~~~~~~~~~~~f~~V~nALdn~~Ar~~~l~~~ 287 (288)
.+||+||+++...++|+.| .+...+...+++|..++.++.-.|..... .+++.++|+|+.|+||..+|..-.-.|
T Consensus 58 ~sNL~Rq~l~~~~diG~~K----a~~~~~~l~~~np~v~i~~~~~~i~~~~~-~~~~~~~D~Vi~~~d~~~~r~~l~~~~ 132 (202)
T TIGR02356 58 LSNLQRQILFTEEDVGRPK----VEVAAQRLRELNSDIQVTALKERVTAENL-ELLINNVDLVLDCTDNFATRYLINDAC 132 (202)
T ss_pred ccchhhhhccChhhCCChH----HHHHHHHHHHhCCCCEEEEehhcCCHHHH-HHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 5789999999999999886 44445666778888899998887764322 357899999999999999987654443
No 43
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=96.28 E-value=0.0012 Score=58.72 Aligned_cols=74 Identities=18% Similarity=0.275 Sum_probs=60.5
Q ss_pred HHHHHhhhcccCCCCCCCCCCCceeeehhhhhcccccceEeEEcCCCCCCCCChhhhcccCeEEEchhchhhhhhheeec
Q psy9781 208 VRELKTKFDVSRPGLDKSFYGDRLTVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRVSKFSALLLC 287 (288)
Q Consensus 208 ~s~L~rqf~~~~~~~~k~~~~~~l~fdd~~~~dFV~aaNLRA~~f~I~~~~~~~~~~~~f~~V~nALdn~~Ar~~~l~~~ 287 (288)
.+||+|||+++.+++|++| .+...+...+.+|..++.++.-.+. ....+++.+||+|+.+.|+.++|..-.-+|
T Consensus 58 ~snL~rqfl~~~~diG~~K----a~a~~~~L~~lNp~v~i~~~~~~~~--~~~~~~~~~~dvVi~~~~~~~~~~~ln~~c 131 (197)
T cd01492 58 EEDLGAQFLIPAEDLGQNR----AEASLERLRALNPRVKVSVDTDDIS--EKPEEFFSQFDVVVATELSRAELVKINELC 131 (197)
T ss_pred HhhCCCCccccHHHcCchH----HHHHHHHHHHHCCCCEEEEEecCcc--ccHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 5789999999999999986 5555677788899788998887776 345678999999999999999987755444
No 44
>PRK07411 hypothetical protein; Validated
Probab=96.20 E-value=0.00088 Score=65.51 Aligned_cols=75 Identities=17% Similarity=0.255 Sum_probs=62.0
Q ss_pred HHHHHhhhcccCCCCCCCCCCCceeeehhhhhcccccceEeEEcCCCCCCCCChhhhcccCeEEEchhchhhhhhheeec
Q psy9781 208 VRELKTKFDVSRPGLDKSFYGDRLTVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRVSKFSALLLC 287 (288)
Q Consensus 208 ~s~L~rqf~~~~~~~~k~~~~~~l~fdd~~~~dFV~aaNLRA~~f~I~~~~~~~~~~~~f~~V~nALdn~~Ar~~~l~~~ 287 (288)
.+||+||+++...++|++| .+.+.+...+.+|..++.++.-.|... ...+++.++|+|+.++||..+|....-+|
T Consensus 75 ~sNL~RQ~l~~~~dvG~~K----a~~a~~~l~~~np~v~v~~~~~~~~~~-~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~ 149 (390)
T PRK07411 75 SSNLQRQVIHGTSWVGKPK----IESAKNRILEINPYCQVDLYETRLSSE-NALDILAPYDVVVDGTDNFPTRYLVNDAC 149 (390)
T ss_pred ccccCcCcccChHHCCCcH----HHHHHHHHHHHCCCCeEEEEecccCHH-hHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 5899999999999999986 565567777888888999999888753 23568999999999999999998765555
No 45
>PRK14851 hypothetical protein; Provisional
Probab=96.17 E-value=0.0011 Score=69.21 Aligned_cols=75 Identities=17% Similarity=0.298 Sum_probs=60.4
Q ss_pred HHHHHhhhcccCCCCCCCCCCCceeeehhhhhcccccceEeEEcCCCCCCCCChhhhcccCeEEEchhc--hhhhhhhee
Q psy9781 208 VRELKTKFDVSRPGLDKSFYGDRLTVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDN--RVSKFSALL 285 (288)
Q Consensus 208 ~s~L~rqf~~~~~~~~k~~~~~~l~fdd~~~~dFV~aaNLRA~~f~I~~~~~~~~~~~~f~~V~nALdn--~~Ar~~~l~ 285 (288)
.+|||||+.+...++|++| .+...+...+++|.++|.++.-+|..... ..++.++|+|+.++|| ..+|...+-
T Consensus 80 ~sNLNRQ~~~~~~dvG~~K----v~v~~~~l~~inP~~~I~~~~~~i~~~n~-~~~l~~~DvVid~~D~~~~~~r~~l~~ 154 (679)
T PRK14851 80 PVNVNRQFGARVPSFGRPK----LAVMKEQALSINPFLEITPFPAGINADNM-DAFLDGVDVVLDGLDFFQFEIRRTLFN 154 (679)
T ss_pred ccccccCcCcChhhCCCHH----HHHHHHHHHHhCCCCeEEEEecCCChHHH-HHHHhCCCEEEECCCCCcHHHHHHHHH
Confidence 6899999999999999997 66667788899999999999999975322 4689999999999997 456655443
Q ss_pred ec
Q psy9781 286 LC 287 (288)
Q Consensus 286 ~~ 287 (288)
.|
T Consensus 155 ~c 156 (679)
T PRK14851 155 MA 156 (679)
T ss_pred HH
Confidence 33
No 46
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=96.11 E-value=0.0013 Score=64.30 Aligned_cols=75 Identities=20% Similarity=0.298 Sum_probs=61.3
Q ss_pred HHHHHhhhcccCCCCCCCCCCCceeeehhhhhcccccceEeEEcCCCCCCCCChhhhcccCeEEEchhchhhhhhheeec
Q psy9781 208 VRELKTKFDVSRPGLDKSFYGDRLTVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRVSKFSALLLC 287 (288)
Q Consensus 208 ~s~L~rqf~~~~~~~~k~~~~~~l~fdd~~~~dFV~aaNLRA~~f~I~~~~~~~~~~~~f~~V~nALdn~~Ar~~~l~~~ 287 (288)
.+||+||+++...++|+.| .+...+...+++|..+++++.-.|... ...+++.++|+|+.+.||..+|....-+|
T Consensus 79 ~sNL~Rq~l~~~~diG~~K----a~~a~~~l~~~np~v~i~~~~~~i~~~-~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~ 153 (392)
T PRK07878 79 ESNLQRQVIHGQSDVGRSK----AQSARDSIVEINPLVNVRLHEFRLDPS-NAVELFSQYDLILDGTDNFATRYLVNDAA 153 (392)
T ss_pred CcccccccccChhcCCChH----HHHHHHHHHHhCCCcEEEEEeccCChh-HHHHHHhcCCEEEECCCCHHHHHHHHHHH
Confidence 5799999999999999986 555567778889989999998888743 23568999999999999999987655544
No 47
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=96.07 E-value=0.0015 Score=59.75 Aligned_cols=76 Identities=16% Similarity=0.204 Sum_probs=57.2
Q ss_pred HHHHHhhhcccCCCCCCCCCCCceeeehhhhhcccccceEeEEcCCCCCCCCChhhhcccCeEEEchhchhhhhhheeec
Q psy9781 208 VRELKTKFDVSRPGLDKSFYGDRLTVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRVSKFSALLLC 287 (288)
Q Consensus 208 ~s~L~rqf~~~~~~~~k~~~~~~l~fdd~~~~dFV~aaNLRA~~f~I~~~~~~~~~~~~f~~V~nALdn~~Ar~~~l~~~ 287 (288)
.+||+||+.....++|+.| .+...+...+.+|.+++.++.-.|.+.....-+..+||+|+.|+||.+++..-.-.|
T Consensus 48 ~sNlnRq~~~~~~diG~~K----ae~~~~~l~~inP~~~V~~~~~~i~~~~~~~l~~~~~D~VvdaiD~~~~k~~L~~~c 123 (231)
T cd00755 48 VSNLNRQIHALLSTVGKPK----VEVMAERIRDINPECEVDAVEEFLTPDNSEDLLGGDPDFVVDAIDSIRAKVALIAYC 123 (231)
T ss_pred chhhcchhCcChhhCCCcH----HHHHHHHHHHHCCCcEEEEeeeecCHhHHHHHhcCCCCEEEEcCCCHHHHHHHHHHH
Confidence 5799999999888999886 555467778888888899888777643332223357999999999999997654444
No 48
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=96.03 E-value=0.0021 Score=59.00 Aligned_cols=75 Identities=15% Similarity=0.201 Sum_probs=59.3
Q ss_pred HHHHHhhhcccCCCCCCCCCCCceeeehhhhhcccccceEeEEcCCCCCCCCChhhhcccCeEEEchhchhhhhhheeec
Q psy9781 208 VRELKTKFDVSRPGLDKSFYGDRLTVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRVSKFSALLLC 287 (288)
Q Consensus 208 ~s~L~rqf~~~~~~~~k~~~~~~l~fdd~~~~dFV~aaNLRA~~f~I~~~~~~~~~~~~f~~V~nALdn~~Ar~~~l~~~ 287 (288)
.+||+||+++...++|+.| .+...+...+++|..++.++.-.|.+.. ..+++.++|+|+.|.||.++|....-+|
T Consensus 69 ~sNL~Rq~l~~~~dvG~~K----a~~a~~~l~~lnp~v~i~~~~~~i~~~~-~~~~~~~~DiVi~~~D~~~~r~~ln~~~ 143 (245)
T PRK05690 69 LSNLQRQVLHDDATIGQPK----VESARAALARINPHIAIETINARLDDDE-LAALIAGHDLVLDCTDNVATRNQLNRAC 143 (245)
T ss_pred cchhhhhhcCChhhCCChH----HHHHHHHHHHHCCCCEEEEEeccCCHHH-HHHHHhcCCEEEecCCCHHHHHHHHHHH
Confidence 5799999999989999886 5555666778888889999988876422 2457899999999999999987554443
No 49
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.96 E-value=0.0013 Score=63.58 Aligned_cols=75 Identities=16% Similarity=0.247 Sum_probs=60.7
Q ss_pred HHHHHhhhcccCCCCCCCCCCCceeeehhhhhcccccceEeEEcCCCCCCCCChhhhcccCeEEEchhchhhhhhheeec
Q psy9781 208 VRELKTKFDVSRPGLDKSFYGDRLTVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRVSKFSALLLC 287 (288)
Q Consensus 208 ~s~L~rqf~~~~~~~~k~~~~~~l~fdd~~~~dFV~aaNLRA~~f~I~~~~~~~~~~~~f~~V~nALdn~~Ar~~~l~~~ 287 (288)
.+||+||+++...++|++| .+.+.+...+.+|..++.++.-.|... -..+++.++|+|+.+.||..+|....-+|
T Consensus 65 ~sNL~Rq~l~~~~diG~~K----a~~a~~~l~~~np~v~v~~~~~~i~~~-~~~~~~~~~DvVvd~~d~~~~r~~~n~~c 139 (355)
T PRK05597 65 LSNLHRQVIHSTAGVGQPK----AESAREAMLALNPDVKVTVSVRRLTWS-NALDELRDADVILDGSDNFDTRHLASWAA 139 (355)
T ss_pred ccccccCcccChhHCCChH----HHHHHHHHHHHCCCcEEEEEEeecCHH-HHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 5799999999999999986 555566777888888999988877642 22468899999999999999997665555
No 50
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=95.92 E-value=0.0013 Score=63.99 Aligned_cols=75 Identities=16% Similarity=0.234 Sum_probs=60.8
Q ss_pred HHHHHhhhcccCCCCCCCCCCCceeeehhhhhcccccceEeEEcCCCCCCCCChhhhcccCeEEEchhchhhhhhheeec
Q psy9781 208 VRELKTKFDVSRPGLDKSFYGDRLTVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRVSKFSALLLC 287 (288)
Q Consensus 208 ~s~L~rqf~~~~~~~~k~~~~~~l~fdd~~~~dFV~aaNLRA~~f~I~~~~~~~~~~~~f~~V~nALdn~~Ar~~~l~~~ 287 (288)
.+||+||+++...++|++| .+...+....+++..++.++...|... .-.+++.++|+|+.++||..+|....-+|
T Consensus 78 ~sNL~RQ~l~~~~diG~~K----a~~~~~~l~~~np~v~i~~~~~~i~~~-~~~~~~~~~DlVid~~Dn~~~r~~in~~~ 152 (370)
T PRK05600 78 VSNIHRQILFGASDVGRPK----VEVAAERLKEIQPDIRVNALRERLTAE-NAVELLNGVDLVLDGSDSFATKFLVADAA 152 (370)
T ss_pred cccccccccCChhHCCCHH----HHHHHHHHHHHCCCCeeEEeeeecCHH-HHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 5899999999999999886 555566777888888999998888642 22468899999999999999998665555
No 51
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=95.77 E-value=0.0023 Score=57.86 Aligned_cols=75 Identities=16% Similarity=0.265 Sum_probs=58.4
Q ss_pred HHHHHhhhcccCCCCCCCCCCCceeeehhhhhcccccceEeEEcCCCCCCCCChhhhcccCeEEEchhchhhhhhheeec
Q psy9781 208 VRELKTKFDVSRPGLDKSFYGDRLTVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRVSKFSALLLC 287 (288)
Q Consensus 208 ~s~L~rqf~~~~~~~~k~~~~~~l~fdd~~~~dFV~aaNLRA~~f~I~~~~~~~~~~~~f~~V~nALdn~~Ar~~~l~~~ 287 (288)
.+||+||+++...++|+.| .+...+...+++|..++.++.-.|.... -.+++.++|+|+.|+||..+|..-.-.|
T Consensus 58 ~sNL~Rq~l~~~~diG~~K----a~~~~~~l~~~np~~~i~~~~~~i~~~~-~~~~~~~~DvVi~~~d~~~~r~~l~~~~ 132 (228)
T cd00757 58 LSNLQRQILHTEADVGQPK----AEAAAERLRAINPDVEIEAYNERLDAEN-AEELIAGYDLVLDCTDNFATRYLINDAC 132 (228)
T ss_pred CcccccccccChhhCCChH----HHHHHHHHHHhCCCCEEEEecceeCHHH-HHHHHhCCCEEEEcCCCHHHHHHHHHHH
Confidence 4789999999988999886 5555677788888889999888774322 2457899999999999999987654333
No 52
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=95.62 E-value=0.0023 Score=58.57 Aligned_cols=75 Identities=15% Similarity=0.180 Sum_probs=58.6
Q ss_pred HHHHHhhhcccCCCCCCCCCCCceeeehhhhhcccccceEeEEcCCCCCCCCChhhhcccCeEEEchhchhhhhhheeec
Q psy9781 208 VRELKTKFDVSRPGLDKSFYGDRLTVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRVSKFSALLLC 287 (288)
Q Consensus 208 ~s~L~rqf~~~~~~~~k~~~~~~l~fdd~~~~dFV~aaNLRA~~f~I~~~~~~~~~~~~f~~V~nALdn~~Ar~~~l~~~ 287 (288)
.+||+||+++...++|+.| .+...+...+.+|..++.++.-.|... ...+++.++|+|+.|+||..+|..-.-+|
T Consensus 61 ~sNL~RQ~l~~~~diG~~K----a~~a~~~l~~inp~v~i~~~~~~i~~~-~~~~~~~~~DlVvd~~D~~~~r~~ln~~~ 135 (240)
T TIGR02355 61 LSNLQRQVLHSDANIGQPK----VESAKDALTQINPHIAINPINAKLDDA-ELAALIAEHDIVVDCTDNVEVRNQLNRQC 135 (240)
T ss_pred ccCcccceeeeHhhCCCcH----HHHHHHHHHHHCCCcEEEEEeccCCHH-HHHHHhhcCCEEEEcCCCHHHHHHHHHHH
Confidence 5789999999888999986 555566677888888999988777642 22468899999999999999987544333
No 53
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=95.47 E-value=0.002 Score=59.47 Aligned_cols=77 Identities=18% Similarity=0.294 Sum_probs=62.3
Q ss_pred HHHHHHhhhcccCCCCCCCCCCCceeeehhhhhcccccceEeEEcCCCCCCCCChhhhcccCeEEEchhchhhhhhheee
Q psy9781 207 SVRELKTKFDVSRPGLDKSFYGDRLTVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRVSKFSALLL 286 (288)
Q Consensus 207 s~s~L~rqf~~~~~~~~k~~~~~~l~fdd~~~~dFV~aaNLRA~~f~I~~~~~~~~~~~~f~~V~nALdn~~Ar~~~l~~ 286 (288)
+++|+|||.-....++|++| .+.-.+....++|.+++.+++--|.+...+.=+..+||.|+-|+||++++++=+.-
T Consensus 66 ~vTN~NRQi~A~~~~iGk~K----v~vm~eri~~InP~c~V~~~~~f~t~en~~~~~~~~~DyvIDaiD~v~~Kv~Li~~ 141 (263)
T COG1179 66 CVTNTNRQIHALLGDIGKPK----VEVMKERIKQINPECEVTAINDFITEENLEDLLSKGFDYVIDAIDSVRAKVALIAY 141 (263)
T ss_pred cccccchhhHhhhhhcccHH----HHHHHHHHHhhCCCceEeehHhhhCHhHHHHHhcCCCCEEEEchhhhHHHHHHHHH
Confidence 47899999998888899997 44447888999999999999988886544433456899999999999999876654
Q ss_pred c
Q psy9781 287 C 287 (288)
Q Consensus 287 ~ 287 (288)
|
T Consensus 142 c 142 (263)
T COG1179 142 C 142 (263)
T ss_pred H
Confidence 5
No 54
>PRK08328 hypothetical protein; Provisional
Probab=95.42 E-value=0.0053 Score=55.81 Aligned_cols=73 Identities=16% Similarity=0.185 Sum_probs=55.1
Q ss_pred HHHHHhhhcccCCCCCCCCCCCceeeehhhhhcccccceEeEEcCCCCCCCCChhhhcccCeEEEchhchhhhhhhe
Q psy9781 208 VRELKTKFDVSRPGLDKSFYGDRLTVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRVSKFSAL 284 (288)
Q Consensus 208 ~s~L~rqf~~~~~~~~k~~~~~~l~fdd~~~~dFV~aaNLRA~~f~I~~~~~~~~~~~~f~~V~nALdn~~Ar~~~l 284 (288)
.+||+||+++...++|+.+ +.+.+......++|..++.++...+.+... .++++++|+|+.|+||.++|..-.
T Consensus 64 ~sNL~Rq~l~~~~dvG~~~---k~~~a~~~l~~~np~v~v~~~~~~~~~~~~-~~~l~~~D~Vid~~d~~~~r~~l~ 136 (231)
T PRK08328 64 LSNLNRQILHWEEDLGKNP---KPLSAKWKLERFNSDIKIETFVGRLSEENI-DEVLKGVDVIVDCLDNFETRYLLD 136 (231)
T ss_pred hhhhccccccChhhcCchH---HHHHHHHHHHHhCCCCEEEEEeccCCHHHH-HHHHhcCCEEEECCCCHHHHHHHH
Confidence 7899999999888888742 233334556677888899998877754332 457899999999999998886543
No 55
>PRK14852 hypothetical protein; Provisional
Probab=95.29 E-value=0.0041 Score=67.11 Aligned_cols=71 Identities=17% Similarity=0.224 Sum_probs=58.7
Q ss_pred HHHHHhhhcccCCCCCCCCCCCceeeehhhhhcccccceEeEEcCCCCCCCCChhhhcccCeEEEchhch--hhhhhh
Q psy9781 208 VRELKTKFDVSRPGLDKSFYGDRLTVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNR--VSKFSA 283 (288)
Q Consensus 208 ~s~L~rqf~~~~~~~~k~~~~~~l~fdd~~~~dFV~aaNLRA~~f~I~~~~~~~~~~~~f~~V~nALdn~--~Ar~~~ 283 (288)
.+|||||+++...++|++| .+...+.+.+++|..+|+++.-+|.... -.+++.++|+|+.++||. .+|.+.
T Consensus 369 ~SNLNRQ~l~~~~dIG~~K----aevaa~~l~~INP~v~I~~~~~~I~~en-~~~fl~~~DiVVDa~D~~~~~~rr~l 441 (989)
T PRK14852 369 PVNLNRQYGASIASFGRGK----LDVMTERALSVNPFLDIRSFPEGVAAET-IDAFLKDVDLLVDGIDFFALDIRRRL 441 (989)
T ss_pred ccccccccCCChhhCCChH----HHHHHHHHHHHCCCCeEEEEecCCCHHH-HHHHhhCCCEEEECCCCccHHHHHHH
Confidence 6999999999999999997 6666788889999999999999996532 246899999999999984 455443
No 56
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=95.24 E-value=0.0052 Score=54.57 Aligned_cols=76 Identities=16% Similarity=0.222 Sum_probs=59.0
Q ss_pred HHHHHhhhcccC--CCCCCCCCCCceeeehhhhhcccccceEeEEcCCCCC-CCCChhhhcccCeEEEchhchhhhhhhe
Q psy9781 208 VRELKTKFDVSR--PGLDKSFYGDRLTVARNSALNFNPDANIVAHHTSIIS-ADFGVNYFKQFTLVMNALDNRVSKFSAL 284 (288)
Q Consensus 208 ~s~L~rqf~~~~--~~~~k~~~~~~l~fdd~~~~dFV~aaNLRA~~f~I~~-~~~~~~~~~~f~~V~nALdn~~Ar~~~l 284 (288)
.+||+|||++.. .++|+.| .+...+...+.+|..+++++.-.+.. ......++.+||+|+.+.|+..+|..-.
T Consensus 56 ~snl~rq~~~~~~~~~iG~~K----a~~~~~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~ln 131 (198)
T cd01485 56 TEDLGSNFFLDAEVSNSGMNR----AAASYEFLQELNPNVKLSIVEEDSLSNDSNIEEYLQKFTLVIATEENYERTAKVN 131 (198)
T ss_pred hhcCcccEecccchhhcCchH----HHHHHHHHHHHCCCCEEEEEecccccchhhHHHHHhCCCEEEECCCCHHHHHHHH
Confidence 578999998887 7788886 44446677788888899998877752 2445678999999999999999887755
Q ss_pred eec
Q psy9781 285 LLC 287 (288)
Q Consensus 285 ~~~ 287 (288)
-+|
T Consensus 132 ~~c 134 (198)
T cd01485 132 DVC 134 (198)
T ss_pred HHH
Confidence 554
No 57
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=94.94 E-value=0.0062 Score=59.12 Aligned_cols=75 Identities=15% Similarity=0.238 Sum_probs=56.1
Q ss_pred HHHHHhhhcccCCCCCCCCCCCceeeehhhhhcccccceEeEEcCCCCCCCCChhhhcccCeEEEchhchhhhhhheeec
Q psy9781 208 VRELKTKFDVSRPGLDKSFYGDRLTVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRVSKFSALLLC 287 (288)
Q Consensus 208 ~s~L~rqf~~~~~~~~k~~~~~~l~fdd~~~~dFV~aaNLRA~~f~I~~~~~~~~~~~~f~~V~nALdn~~Ar~~~l~~~ 287 (288)
.+||+||+++...++|+.| .+...+...+.++..++.++.-.|..... ..++.++|+|++|+||..+|....-+|
T Consensus 172 ~sNl~Rq~l~~~~diG~~K----a~~~~~~l~~~np~v~v~~~~~~~~~~~~-~~~~~~~D~Vv~~~d~~~~r~~ln~~~ 246 (376)
T PRK08762 172 RSNLQRQILHTEDRVGQPK----VDSAAQRLAALNPDVQVEAVQERVTSDNV-EALLQDVDVVVDGADNFPTRYLLNDAC 246 (376)
T ss_pred chhhccccccchhhCCCcH----HHHHHHHHHHHCCCCEEEEEeccCChHHH-HHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 6899999999999999886 44445556666777788888766653211 346789999999999999987654444
No 58
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=94.79 E-value=0.0055 Score=57.26 Aligned_cols=75 Identities=17% Similarity=0.326 Sum_probs=54.2
Q ss_pred HHHHHhhhcccCCCCCCCCCCCceeeehhhhhcccccceEeEEcCCCCCCCCChhhh-cccCeEEEchhchhhhhhheee
Q psy9781 208 VRELKTKFDVSRPGLDKSFYGDRLTVARNSALNFNPDANIVAHHTSIISADFGVNYF-KQFTLVMNALDNRVSKFSALLL 286 (288)
Q Consensus 208 ~s~L~rqf~~~~~~~~k~~~~~~l~fdd~~~~dFV~aaNLRA~~f~I~~~~~~~~~~-~~f~~V~nALdn~~Ar~~~l~~ 286 (288)
.+|||||+.+...++|++| .+...+...+.+|.+++.++.-.|.+.... .++ .+||+|+.|+|+++++..-.-.
T Consensus 67 ~sNlnRQ~~~~~~~vG~~K----ve~~~~rl~~INP~~~V~~i~~~i~~e~~~-~ll~~~~D~VIdaiD~~~~k~~L~~~ 141 (268)
T PRK15116 67 VTNTNRQIHALRDNVGLAK----AEVMAERIRQINPECRVTVVDDFITPDNVA-EYMSAGFSYVIDAIDSVRPKAALIAY 141 (268)
T ss_pred ccccccccccChhhcChHH----HHHHHHHHHhHCCCcEEEEEecccChhhHH-HHhcCCCCEEEEcCCCHHHHHHHHHH
Confidence 5789999988888888876 444456677888888898887666533222 233 4799999999999988754433
Q ss_pred c
Q psy9781 287 C 287 (288)
Q Consensus 287 ~ 287 (288)
|
T Consensus 142 c 142 (268)
T PRK15116 142 C 142 (268)
T ss_pred H
Confidence 3
No 59
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=94.54 E-value=0.0097 Score=56.12 Aligned_cols=71 Identities=11% Similarity=0.214 Sum_probs=57.1
Q ss_pred HHHHHhhhcccCCCCCCCCCCCceeeehhhhhcccccceEeEEcCCCCCCCCChhhhcccCeEEEchhchhhhhhheeec
Q psy9781 208 VRELKTKFDVSRPGLDKSFYGDRLTVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRVSKFSALLLC 287 (288)
Q Consensus 208 ~s~L~rqf~~~~~~~~k~~~~~~l~fdd~~~~dFV~aaNLRA~~f~I~~~~~~~~~~~~f~~V~nALdn~~Ar~~~l~~~ 287 (288)
.+||+|||+.+.+++|+++ .+...+...+.+|..++.++...+ +.+++.+||+|+.+.|+.++|..-.-+|
T Consensus 56 ~snL~rqf~~~~~dIGk~K----aea~~~~L~eLNp~V~V~~~~~~~-----~~~~l~~fdvVV~~~~~~~~~~~in~~c 126 (286)
T cd01491 56 WSDLSSQFYLREEDIGKNR----AEASQARLAELNPYVPVTVSTGPL-----TTDELLKFQVVVLTDASLEDQLKINEFC 126 (286)
T ss_pred hhhcccCccCChHHhCHHH----HHHHHHHHHHHCCCCEEEEEeccC-----CHHHHhcCCEEEEecCCHHHHHHHHHHH
Confidence 5789999999999999886 444456677888888888887653 4578999999999999999987765554
No 60
>PRK14852 hypothetical protein; Provisional
Probab=94.35 E-value=0.025 Score=61.24 Aligned_cols=35 Identities=20% Similarity=0.378 Sum_probs=32.9
Q ss_pred cccCCCCeeecccCCCCceeEEEeCCCCCCCcCcCC
Q psy9781 2 CLASEVPLIESGTAGYEGQVELIKKGETKCYECDPK 37 (288)
Q Consensus 2 Cv~~~~PLIesGt~G~~Gqv~viiP~~T~cy~c~~~ 37 (288)
|+.++||+|.+|+.|+.||+++|.|+. .||+|.++
T Consensus 445 c~~~~IP~I~ag~~G~~g~v~v~~p~~-~~~~~~f~ 479 (989)
T PRK14852 445 ALELGIPVITAGPLGYSCALLVFMPGG-MNFDSYFG 479 (989)
T ss_pred HHHcCCCEEEeeccccCeeEEEEcCCC-CCHHHhCC
Confidence 889999999999999999999999976 89999996
No 61
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=94.34 E-value=0.016 Score=48.18 Aligned_cols=72 Identities=21% Similarity=0.319 Sum_probs=55.1
Q ss_pred HHHHHhhhcccCCCCCCCCCCCceeeehhhhhcccccceEeEEcCCCCCCCCChhhhcccCeEEEchhchhhhhhhe
Q psy9781 208 VRELKTKFDVSRPGLDKSFYGDRLTVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRVSKFSAL 284 (288)
Q Consensus 208 ~s~L~rqf~~~~~~~~k~~~~~~l~fdd~~~~dFV~aaNLRA~~f~I~~~~~~~~~~~~f~~V~nALdn~~Ar~~~l 284 (288)
.+||+||++....++|++| .+...+....++|..++.++.-.+..... ..++.++|+|+.+.||..+|..-.
T Consensus 36 ~~nl~r~~~~~~~~vG~~K----a~~~~~~l~~~~p~v~i~~~~~~~~~~~~-~~~~~~~diVi~~~d~~~~~~~l~ 107 (143)
T cd01483 36 LSNLNRQFLARQADIGKPK----AEVAARRLNELNPGVNVTAVPEGISEDNL-DDFLDGVDLVIDAIDNIAVRRALN 107 (143)
T ss_pred cchhhccccCChhHCCChH----HHHHHHHHHHHCCCcEEEEEeeecChhhH-HHHhcCCCEEEECCCCHHHHHHHH
Confidence 4689999998888888886 44445666677777788888777664322 578899999999999999877543
No 62
>PRK07877 hypothetical protein; Provisional
Probab=94.30 E-value=0.0078 Score=63.37 Aligned_cols=74 Identities=11% Similarity=0.081 Sum_probs=60.9
Q ss_pred HHHHHhhhcccCCCCCCCCCCCceeeehhhhhcccccceEeEEcCCCCCCCCChhhhcccCeEEEchhchhhhhhheeec
Q psy9781 208 VRELKTKFDVSRPGLDKSFYGDRLTVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRVSKFSALLLC 287 (288)
Q Consensus 208 ~s~L~rqf~~~~~~~~k~~~~~~l~fdd~~~~dFV~aaNLRA~~f~I~~~~~~~~~~~~f~~V~nALdn~~Ar~~~l~~~ 287 (288)
++|||||+ +...++|+.| .+.+.....+.+|..+|+++.-+|..... .+++.++|+|+.++||.++|...+-.|
T Consensus 144 ~sNLnRq~-~~~~diG~~K----v~~a~~~l~~inp~i~v~~~~~~i~~~n~-~~~l~~~DlVvD~~D~~~~R~~ln~~a 217 (722)
T PRK07877 144 LSNLNRVP-AGVFDLGVNK----AVVAARRIAELDPYLPVEVFTDGLTEDNV-DAFLDGLDVVVEECDSLDVKVLLREAA 217 (722)
T ss_pred cccccccc-CChhhcccHH----HHHHHHHHHHHCCCCEEEEEeccCCHHHH-HHHhcCCCEEEECCCCHHHHHHHHHHH
Confidence 68999984 6778899887 66667888899999999999999985332 457899999999999999998765444
No 63
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=94.20 E-value=0.0046 Score=51.03 Aligned_cols=73 Identities=16% Similarity=0.257 Sum_probs=55.7
Q ss_pred HHHHhhhcccCCCCCCCCCCCceeeehhhhhcccccceEeEEcCCCCCCCCChhhhcccCeEEEchhchhhhhhheee
Q psy9781 209 RELKTKFDVSRPGLDKSFYGDRLTVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRVSKFSALLL 286 (288)
Q Consensus 209 s~L~rqf~~~~~~~~k~~~~~~l~fdd~~~~dFV~aaNLRA~~f~I~~~~~~~~~~~~f~~V~nALdn~~Ar~~~l~~ 286 (288)
+||+||+++...++|++| .+...+...+.+|.++++++.-.+.. ....++++++|+|+.++|+..+|..-.-+
T Consensus 40 ~nl~r~~~~~~~~vG~~K----a~~~~~~l~~~np~~~v~~~~~~~~~-~~~~~~~~~~d~vi~~~d~~~~~~~l~~~ 112 (135)
T PF00899_consen 40 SNLNRQFLYTEEDVGKNK----AEAAKERLQEINPDVEVEAIPEKIDE-ENIEELLKDYDIVIDCVDSLAARLLLNEI 112 (135)
T ss_dssp GGCCTCTTS-GGGTTSBH----HHHHHHHHHHHSTTSEEEEEESHCSH-HHHHHHHHTSSEEEEESSSHHHHHHHHHH
T ss_pred cccccccccccccchhHH----HHHHHHHHHHhcCceeeeeeeccccc-ccccccccCCCEEEEecCCHHHHHHHHHH
Confidence 478888888877888876 55556677788888999999988843 23356788999999999999998765433
No 64
>PRK14851 hypothetical protein; Provisional
Probab=93.99 E-value=0.031 Score=58.62 Aligned_cols=36 Identities=17% Similarity=0.317 Sum_probs=33.2
Q ss_pred CcccCCCCeeecccCCCCceeEEEeCCCCCCCcCcCC
Q psy9781 1 MCLASEVPLIESGTAGYEGQVELIKKGETKCYECDPK 37 (288)
Q Consensus 1 ~Cv~~~~PLIesGt~G~~Gqv~viiP~~T~cy~c~~~ 37 (288)
.|..+++|+|.+|+.|+.|++.++.|+ +.||+|.++
T Consensus 155 ~c~~~~iP~i~~g~~G~~g~~~~~~p~-~~~~~~~~~ 190 (679)
T PRK14851 155 MAREKGIPVITAGPLGYSSAMLVFTPQ-GMGFDDYFN 190 (679)
T ss_pred HHHHCCCCEEEeecccccceEEEEcCC-CCCHhHhcc
Confidence 388999999999999999999999998 789999886
No 65
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=93.86 E-value=0.025 Score=49.15 Aligned_cols=69 Identities=17% Similarity=0.146 Sum_probs=51.8
Q ss_pred HHHHHhhhcccCCCCCCCCCCCceeeehhhhhcccccceEeEEcCCCCCCCCChhhhcccCeEEEchhchhhhhh
Q psy9781 208 VRELKTKFDVSRPGLDKSFYGDRLTVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRVSKFS 282 (288)
Q Consensus 208 ~s~L~rqf~~~~~~~~k~~~~~~l~fdd~~~~dFV~aaNLRA~~f~I~~~~~~~~~~~~f~~V~nALdn~~Ar~~ 282 (288)
.+||+||+.. ..++|++| .+........++|..++.++.-.+... ...+++.++|+|+.|.||.++|..
T Consensus 36 ~sNl~Rq~~~-~~~vg~~K----a~~~~~~l~~lnp~v~i~~~~~~~~~~-~~~~~l~~~DlVi~~~d~~~~r~~ 104 (174)
T cd01487 36 PSNLNRQQYF-LSQIGEPK----VEALKENLREINPFVKIEAINIKIDEN-NLEGLFGDCDIVVEAFDNAETKAM 104 (174)
T ss_pred Ccchhccccc-HhhCCChH----HHHHHHHHHHHCCCCEEEEEEeecChh-hHHHHhcCCCEEEECCCCHHHHHH
Confidence 4789999955 46788775 333355666778888899988877642 224689999999999999999864
No 66
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=93.60 E-value=0.015 Score=52.30 Aligned_cols=71 Identities=21% Similarity=0.248 Sum_probs=52.9
Q ss_pred HHHHHhhhcccCCCCCCCCCCCceeeehhhhhcccccceEeEEcCCCCCCCCChhhhcccCeEEEchhchhhhhhhe
Q psy9781 208 VRELKTKFDVSRPGLDKSFYGDRLTVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRVSKFSAL 284 (288)
Q Consensus 208 ~s~L~rqf~~~~~~~~k~~~~~~l~fdd~~~~dFV~aaNLRA~~f~I~~~~~~~~~~~~f~~V~nALdn~~Ar~~~l 284 (288)
.+||+||+.+ ..++|+.| .+........+++..++.++.-.|.... ..+++.++|+|+.|+||.++|..-+
T Consensus 65 ~sNL~Rq~~~-~~dvG~~K----a~~a~~~l~~lnp~v~v~~~~~~i~~~~-~~~~~~~~DvVI~a~D~~~~r~~l~ 135 (212)
T PRK08644 65 PSNLNRQQYF-ISQIGMPK----VEALKENLLEINPFVEIEAHNEKIDEDN-IEELFKDCDIVVEAFDNAETKAMLV 135 (212)
T ss_pred cccccccEee-hhhCCChH----HHHHHHHHHHHCCCCEEEEEeeecCHHH-HHHHHcCCCEEEECCCCHHHHHHHH
Confidence 5789999876 56788876 4444555566777788988887776422 2367899999999999999987543
No 67
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=92.17 E-value=0.098 Score=54.47 Aligned_cols=65 Identities=20% Similarity=0.377 Sum_probs=40.3
Q ss_pred CcccCCCCeeecccCCCCceeEEE---e---------------CCCCCCCcCc---CCCCCCCC----CCCCCCCCCCCc
Q psy9781 1 MCLASEVPLIESGTAGYEGQVELI---K---------------KGETKCYECD---PKPAAKTY----PGCTIRNTPSEP 55 (288)
Q Consensus 1 ~Cv~~~~PLIesGt~G~~Gqv~vi---i---------------P~~T~cy~c~---~~~~~~~~----P~CTir~~P~~p 55 (288)
+|+.++||+|+++ .||.||+.+. - +....||.|. .+...... ..||+. -|-.-
T Consensus 468 ~c~~~~kplI~aA-lGfdg~lvmrhG~~~~~~~~~~~~~~~~~~~~~gCYfC~Dv~aP~~s~~~rtlDqqCtVt-rPgv~ 545 (664)
T TIGR01381 468 LCSRHKKIAISAA-LGFDSYVVMRHGIGRSESVSDVSSSDSVPYSRLGCYFCNDVTAPGDSTTDRTLDQQCTVT-RPGTA 545 (664)
T ss_pred HHHHhCCCEEEEE-eccceEEEEEecccccccccccccccccCCCCCCccccCCCCCCCcccccccccccceEe-cchHH
Confidence 5899999999986 8999998865 1 1257899999 32111111 469832 23332
Q ss_pred hhHHHHHHHHhh
Q psy9781 56 IHCIVWAKHLFN 67 (288)
Q Consensus 56 ~HcI~WAk~lF~ 67 (288)
.-.-.-|-+++.
T Consensus 546 ~ias~~AvEll~ 557 (664)
T TIGR01381 546 MIASGLAVELLV 557 (664)
T ss_pred HHHHHHHHHHHH
Confidence 223344556665
No 68
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=91.59 E-value=0.039 Score=53.11 Aligned_cols=77 Identities=13% Similarity=0.182 Sum_probs=55.4
Q ss_pred HHHHHhhhcccCCCCCCCCCCCceeeehhhhhcccccceEeEEcCCCCCCCCChhhhcccCeEEEchhchhhhhhheeec
Q psy9781 208 VRELKTKFDVSRPGLDKSFYGDRLTVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRVSKFSALLLC 287 (288)
Q Consensus 208 ~s~L~rqf~~~~~~~~k~~~~~~l~fdd~~~~dFV~aaNLRA~~f~I~~~~~~~~~~~~f~~V~nALdn~~Ar~~~l~~~ 287 (288)
.+||+||+++...++|+..+ +.+.+.+...++++..++.++...+..... .+++.++|+|+.+.||..+|..-.-+|
T Consensus 61 ~sNL~RQ~l~~~~dig~g~~--Ka~aa~~~l~~inp~v~v~~~~~~~~~~~~-~~~~~~~DlVid~~Dn~~~r~~ln~~~ 137 (339)
T PRK07688 61 WSNLQRQQLYTESDVKNNLP--KAVAAKKRLEEINSDVRVEAIVQDVTAEEL-EELVTGVDLIIDATDNFETRFIVNDAA 137 (339)
T ss_pred HHHcCccccccHHHhcCCCc--HHHHHHHHHHHHCCCcEEEEEeccCCHHHH-HHHHcCCCEEEEcCCCHHHHHHHHHHH
Confidence 68999999999888865320 133334555677777888888877754222 357899999999999999987654444
No 69
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=91.03 E-value=0.039 Score=53.08 Aligned_cols=77 Identities=16% Similarity=0.143 Sum_probs=55.0
Q ss_pred HHHHHhhhcccCCCCCCCCCCCceeeehhhhhcccccceEeEEcCCCCCCCCChhhhcccCeEEEchhchhhhhhheeec
Q psy9781 208 VRELKTKFDVSRPGLDKSFYGDRLTVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRVSKFSALLLC 287 (288)
Q Consensus 208 ~s~L~rqf~~~~~~~~k~~~~~~l~fdd~~~~dFV~aaNLRA~~f~I~~~~~~~~~~~~f~~V~nALdn~~Ar~~~l~~~ 287 (288)
.+||+||+++...++|..++ +.+.+.+...++++..++.++...+.... -.+.+.++|+|+.+.||..+|....-+|
T Consensus 61 ~sNL~RQ~l~~~~d~~~g~~--Ka~aa~~~l~~inp~v~i~~~~~~~~~~~-~~~~~~~~DlVid~~D~~~~r~~in~~~ 137 (338)
T PRK12475 61 WSNLQRQQLYTEEDAKQKKP--KAIAAKEHLRKINSEVEIVPVVTDVTVEE-LEELVKEVDLIIDATDNFDTRLLINDLS 137 (338)
T ss_pred ccccCccccccHHHccCCcc--HHHHHHHHHHHHCCCcEEEEEeccCCHHH-HHHHhcCCCEEEEcCCCHHHHHHHHHHH
Confidence 57999999998887753320 23333556667778888999887775322 2356899999999999999987654444
No 70
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=88.81 E-value=0.14 Score=45.57 Aligned_cols=69 Identities=19% Similarity=0.209 Sum_probs=49.8
Q ss_pred HHHHHhhhcccCCCCCCCCCCCceeeehhhhhcccccceEeEEcCCCCCCCCChhhhcccCeEEEchhchhhhhh
Q psy9781 208 VRELKTKFDVSRPGLDKSFYGDRLTVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRVSKFS 282 (288)
Q Consensus 208 ~s~L~rqf~~~~~~~~k~~~~~~l~fdd~~~~dFV~aaNLRA~~f~I~~~~~~~~~~~~f~~V~nALdn~~Ar~~ 282 (288)
.+||+||+. ...++|+.| .+...+...+.+|..++.++.-.|.... -.+++.++|+|+.|.||..+|..
T Consensus 58 ~sNL~Rq~~-~~~~iG~~K----a~~~~~~l~~inp~~~i~~~~~~i~~~~-~~~~~~~~DlVi~a~Dn~~~k~~ 126 (200)
T TIGR02354 58 PSNLNRQQY-KASQVGEPK----TEALKENISEINPYTEIEAYDEKITEEN-IDKFFKDADIVCEAFDNAEAKAM 126 (200)
T ss_pred ccccccccC-ChhhCCCHH----HHHHHHHHHHHCCCCEEEEeeeeCCHhH-HHHHhcCCCEEEECCCCHHHHHH
Confidence 467888864 446677765 3333556667777889999888886432 23578899999999999998864
No 71
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=88.47 E-value=0.31 Score=42.31 Aligned_cols=34 Identities=21% Similarity=0.329 Sum_probs=28.8
Q ss_pred cccC-CCCeeecccCCCCceeEEEeCCC--CCCCcCc
Q psy9781 2 CLAS-EVPLIESGTAGYEGQVELIKKGE--TKCYECD 35 (288)
Q Consensus 2 Cv~~-~~PLIesGt~G~~Gqv~viiP~~--T~cy~c~ 35 (288)
|... ++|+|.++..|+.|++..+.|+. .+||+|.
T Consensus 109 ~~~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (174)
T cd01487 109 LLGNKNKPVVCASGMAGFGDSNNIKTKKISDNFYICG 145 (174)
T ss_pred HHHHCCCCEEEEehhhccCCeEEEEecCCCCCeEEee
Confidence 3444 99999999999999999888766 5699998
No 72
>PRK07877 hypothetical protein; Provisional
Probab=84.82 E-value=0.55 Score=49.78 Aligned_cols=34 Identities=9% Similarity=0.143 Sum_probs=27.5
Q ss_pred CcccCCCCeeecccCCCCceeE----EEeCCCCCCCcCcCC
Q psy9781 1 MCLASEVPLIESGTAGYEGQVE----LIKKGETKCYECDPK 37 (288)
Q Consensus 1 ~Cv~~~~PLIesGt~G~~Gqv~----viiP~~T~cy~c~~~ 37 (288)
.|+.++||+|.+|..| |++. .+.| .++||.|.+.
T Consensus 216 ~a~~~~iP~i~~~~~~--g~~~~e~~~~~p-~~pc~~cl~~ 253 (722)
T PRK07877 216 AARARRIPVLMATSDR--GLLDVERFDLEP-DRPILHGLLG 253 (722)
T ss_pred HHHHcCCCEEEEcCCC--CCcCcceeeeCC-CCceeeccCC
Confidence 3899999999999666 8873 3556 7999999984
No 73
>PRK06153 hypothetical protein; Provisional
Probab=84.21 E-value=0.23 Score=48.88 Aligned_cols=71 Identities=18% Similarity=0.108 Sum_probs=48.9
Q ss_pred HHHHHhhh-cccCCCCCC--CCCCCceeeehhhhhcccccceEeEEcCCCCCCCCChhhhcccCeEEEchhchhhhhhhe
Q psy9781 208 VRELKTKF-DVSRPGLDK--SFYGDRLTVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRVSKFSAL 284 (288)
Q Consensus 208 ~s~L~rqf-~~~~~~~~k--~~~~~~l~fdd~~~~dFV~aaNLRA~~f~I~~~~~~~~~~~~f~~V~nALdn~~Ar~~~l 284 (288)
.+||+||+ .+...++|+ +| .+...+....+. ..+.++...|.+ .+...+.++|+|+-|+||..+|....
T Consensus 213 ~SNLnRQ~gaf~~~DvGk~~~K----Vevaa~rl~~in--~~I~~~~~~I~~--~n~~~L~~~DiV~dcvDn~~aR~~ln 284 (393)
T PRK06153 213 QHNAFRSPGAASIEELREAPKK----VDYFKSRYSNMR--RGIVPHPEYIDE--DNVDELDGFTFVFVCVDKGSSRKLIV 284 (393)
T ss_pred ccccccccccCCHhHcCCcchH----HHHHHHHHHHhC--CeEEEEeecCCH--HHHHHhcCCCEEEEcCCCHHHHHHHH
Confidence 58999998 567778887 54 444333333343 367777777743 33456899999999999999997654
Q ss_pred ee
Q psy9781 285 LL 286 (288)
Q Consensus 285 ~~ 286 (288)
-.
T Consensus 285 ~~ 286 (393)
T PRK06153 285 DY 286 (393)
T ss_pred HH
Confidence 33
No 74
>KOG2336|consensus
Probab=83.86 E-value=0.4 Score=45.50 Aligned_cols=36 Identities=36% Similarity=0.786 Sum_probs=30.3
Q ss_pred cccCCCCeeecccCC--CCceeEEEeCCCCCCCcCcCC
Q psy9781 2 CLASEVPLIESGTAG--YEGQVELIKKGETKCYECDPK 37 (288)
Q Consensus 2 Cv~~~~PLIesGt~G--~~Gqv~viiP~~T~cy~c~~~ 37 (288)
|-..+--+.|||+.- ..||.|-|+||.|+||.|.++
T Consensus 204 CNE~~q~WmESGVSEnAVSGHIQ~i~PGetACFACaPP 241 (422)
T KOG2336|consen 204 CNELNQTWMESGVSENAVSGHIQLIVPGETACFACAPP 241 (422)
T ss_pred HHHhhhHHHHccCccccccceeEEecCCccceecccCc
Confidence 445566778898864 789999999999999999985
No 75
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=81.32 E-value=0.59 Score=41.42 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=22.1
Q ss_pred CcccCCCCeeecccCCCCceeEEEe
Q psy9781 1 MCLASEVPLIESGTAGYEGQVELIK 25 (288)
Q Consensus 1 ~Cv~~~~PLIesGt~G~~Gqv~vii 25 (288)
+|..+++|+|.+|+.|+.|++.+..
T Consensus 133 ~c~~~~ip~i~~~~~G~~G~v~~~~ 157 (198)
T cd01485 133 VCRKHHIPFISCATYGLIGYAFFDF 157 (198)
T ss_pred HHHHcCCCEEEEEeecCEEEEEEch
Confidence 4889999999999999999998653
No 76
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=80.72 E-value=0.85 Score=45.41 Aligned_cols=36 Identities=19% Similarity=0.352 Sum_probs=29.9
Q ss_pred CcccCCCCeeecccCCCCceeEEEeCCCCCCCcCcCC
Q psy9781 1 MCLASEVPLIESGTAGYEGQVELIKKGETKCYECDPK 37 (288)
Q Consensus 1 ~Cv~~~~PLIesGt~G~~Gqv~viiP~~T~cy~c~~~ 37 (288)
+|...++|||.+++.|+.|++.+.+|. ..+.++.++
T Consensus 132 ~c~~~~iPlI~~~s~G~~G~v~v~~~~-h~i~et~p~ 167 (425)
T cd01493 132 VLWSANIPLLYVRSYGLYGYIRIQLKE-HTIVESHPD 167 (425)
T ss_pred HHHHcCCCEEEEecccCEEEEEEEECC-eEEEECCCC
Confidence 388899999999999999999999984 336666554
No 77
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=75.37 E-value=1 Score=44.89 Aligned_cols=71 Identities=24% Similarity=0.240 Sum_probs=53.0
Q ss_pred HHHHHhhhcccCCCCCCCCCCCceeeehhhhhcccccceEeEEcCCCCCC-CCChhhhcccCeEEEchhchhhhhh
Q psy9781 208 VRELKTKFDVSRPGLDKSFYGDRLTVARNSALNFNPDANIVAHHTSIISA-DFGVNYFKQFTLVMNALDNRVSKFS 282 (288)
Q Consensus 208 ~s~L~rqf~~~~~~~~k~~~~~~l~fdd~~~~dFV~aaNLRA~~f~I~~~-~~~~~~~~~f~~V~nALdn~~Ar~~ 282 (288)
.++|+++|.....++|+++ .+...+...+.+|..++.++.-.+..- ..+.++|.+||+|+-+.++...+..
T Consensus 57 ~sDL~~nFfl~~~diGk~k----A~~~~~~L~eLNp~V~i~~~~e~~~~ll~~~~~f~~~fdiVI~t~~~~~~~~~ 128 (425)
T cd01493 57 EEDLGNNFFLDASSLGKSR----AEATCELLQELNPDVNGSAVEESPEALLDNDPSFFSQFTVVIATNLPESTLLR 128 (425)
T ss_pred hhhccccccCChhhcCcHH----HHHHHHHHHHHCCCCEEEEEecccchhhhhHHHHhcCCCEEEECCCCHHHHHH
Confidence 4578899999889999986 444456777888877888877665421 3457899999999998887766443
No 78
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=73.66 E-value=1.8 Score=38.34 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=21.7
Q ss_pred CcccCCCCeeecccCCCCceeEEE
Q psy9781 1 MCLASEVPLIESGTAGYEGQVELI 24 (288)
Q Consensus 1 ~Cv~~~~PLIesGt~G~~Gqv~vi 24 (288)
.|..+++|+|++|+.|+.|++.+.
T Consensus 130 ~c~~~~ip~i~~~~~G~~G~v~~d 153 (197)
T cd01492 130 LCRKLGVKFYATGVHGLFGFVFAD 153 (197)
T ss_pred HHHHcCCCEEEEEecCCEEEEEEe
Confidence 488899999999999999999864
No 79
>KOG2336|consensus
Probab=66.00 E-value=3.3 Score=39.52 Aligned_cols=73 Identities=19% Similarity=0.257 Sum_probs=49.3
Q ss_pred HHHHHhhhcccCCCCCCCCCCCceeee-hhhhhcccc-cceEeEEcCCCCCC-CCC--hhhhc------c--cCeEEEch
Q psy9781 208 VRELKTKFDVSRPGLDKSFYGDRLTVA-RNSALNFNP-DANIVAHHTSIISA-DFG--VNYFK------Q--FTLVMNAL 274 (288)
Q Consensus 208 ~s~L~rqf~~~~~~~~k~~~~~~l~fd-d~~~~dFV~-aaNLRA~~f~I~~~-~~~--~~~~~------~--f~~V~nAL 274 (288)
+.|+||-| |+....|-+| ++ ....+.++- ..-|-.|+|||... .|+ ++.|. | .|+|+.-+
T Consensus 119 lANMNRLF-f~P~QaGlsK------v~AA~~TL~~iNPDV~iE~hn~NITTvenFd~F~~~is~g~~~~gkpvDLVLSCV 191 (422)
T KOG2336|consen 119 LANMNRLF-FQPDQAGLSK------VDAAVQTLAEINPDVVIEVHNYNITTVENFDTFTDRISNGSLCPGKPVDLVLSCV 191 (422)
T ss_pred hhcccccc-cCcccccchH------HHHHHHHHHhcCCCeEEEEeecceeeehhHHHHHHHhhcCCCCCCCcceEEeeeh
Confidence 45666654 3444334442 34 455666655 89999999999854 453 23332 2 68999999
Q ss_pred hchhhhhhheeec
Q psy9781 275 DNRVSKFSALLLC 287 (288)
Q Consensus 275 dn~~Ar~~~l~~~ 287 (288)
||-+||...+.-|
T Consensus 192 DNfEARMavN~AC 204 (422)
T KOG2336|consen 192 DNFEARMAVNQAC 204 (422)
T ss_pred hhHHHHHHHHHHH
Confidence 9999999988777
No 80
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=57.36 E-value=8.1 Score=34.60 Aligned_cols=27 Identities=19% Similarity=0.166 Sum_probs=21.7
Q ss_pred cccC-CCCeeecccCCCCceeEEEeCCC
Q psy9781 2 CLAS-EVPLIESGTAGYEGQVELIKKGE 28 (288)
Q Consensus 2 Cv~~-~~PLIesGt~G~~Gqv~viiP~~ 28 (288)
|... ++|+|.++..|..|++..|.|+.
T Consensus 138 ~~~~~~~p~I~~~~~~~~~~~~~~~~~~ 165 (212)
T PRK08644 138 VLEHPGKKLVAASGMAGYGDSNSIKTRR 165 (212)
T ss_pred HHHhCCCCEEEeehhhccCCceEEEecC
Confidence 6677 99999987778888888777654
No 81
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=54.70 E-value=3.8 Score=42.75 Aligned_cols=33 Identities=24% Similarity=0.435 Sum_probs=29.8
Q ss_pred cccCC---CCeeecccCCCCceeEEEeCCCCCCCcCcC
Q psy9781 2 CLASE---VPLIESGTAGYEGQVELIKKGETKCYECDP 36 (288)
Q Consensus 2 Cv~~~---~PLIesGt~G~~Gqv~viiP~~T~cy~c~~ 36 (288)
|+..+ +|++=+|+.++.|-+.. |+.|+|++|..
T Consensus 227 cvkegk~~IPai~~G~~~liGPlft--PgkTGCWeCa~ 262 (637)
T TIGR03693 227 CKEEGKGFIPAICLKQVGLAGPVFQ--QHGDECFEAAW 262 (637)
T ss_pred HHHcCCCeEEEEEcccceeecceEC--CCCCcHHHHHH
Confidence 78888 88999999999999887 99999999955
No 82
>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family. Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.
Probab=50.30 E-value=5.7 Score=38.00 Aligned_cols=59 Identities=7% Similarity=-0.048 Sum_probs=44.4
Q ss_pred HHHHHhhhcccCCCCCCCCCCCceeeehhhhhcccccceEeEEcCCCCCCCCChhhhcccCeEEEchhchhhhhh
Q psy9781 208 VRELKTKFDVSRPGLDKSFYGDRLTVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRVSKFS 282 (288)
Q Consensus 208 ~s~L~rqf~~~~~~~~k~~~~~~l~fdd~~~~dFV~aaNLRA~~f~I~~~~~~~~~~~~f~~V~nALdn~~Ar~~ 282 (288)
.|||+ +++..+++|+.| .+-+.+....+++..++... .+.+.++|+|+-+.||...|..
T Consensus 109 ~SNL~--~L~~~~diG~~K----~~~a~~~L~~lnp~v~i~~~----------~~li~~~DlVid~tDn~~~r~L 167 (318)
T TIGR03603 109 ETAEI--DLYSKEFILKKD----IRDLTSNLDALELTKNVDEL----------KDLLKDYNYIIICTEHSNISLL 167 (318)
T ss_pred hhhHH--HHhChhhcCcHH----HHHHHHHHHHhCCCCEEeeH----------HHHhCCCCEEEECCCCccHhHH
Confidence 57888 888889998886 44444555567777777542 3578999999999999998843
No 83
>PF05237 MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 This putative domain is found in the MoeZ protein and the MoeB protein. The domain has two CXXC motifs that are only partly conserved. MoeZ is necessary for the synthesis of pyridine-2,6-bis(thiocarboxylic acid), a small secreted metabolite that has a high affinity for transition metals, increases iron uptake efficiency by 20% in Pseudomonas stutzeri, has the ability to reduce both soluble and mineral forms of iron, and has antimicrobial activity towards several species of bacteria. MoeB is the molybdopterin synthase activating enzyme in the molybdopterin cofactor biosynthesis pathway. Both these enzymes are members of a superfamily consisting of related but structurally distinct proteins that are members of pathways involved in the transfer of sulphur-containing moieties to metabolites [] and both also contain the UBA/THIF-type NAD/FAD binding fold (IPR000594 from INTERPRO). ; PDB: 1JWA_B 1JW9_B 1JWB_B 1ZKM_D 1ZUD_3 1ZFN_D.
Probab=48.22 E-value=4.7 Score=30.73 Aligned_cols=23 Identities=30% Similarity=0.702 Sum_probs=12.5
Q ss_pred CCCCCCcCcCCCCCCCCCCCCCC
Q psy9781 27 GETKCYECDPKPAAKTYPGCTIR 49 (288)
Q Consensus 27 ~~T~cy~c~~~~~~~~~P~CTir 49 (288)
+.|+||+|.+...+...|.|...
T Consensus 1 g~~pC~rCl~p~~~~~~~~C~~~ 23 (84)
T PF05237_consen 1 GKTPCYRCLFPEPPESAPTCAEA 23 (84)
T ss_dssp -T---HHHHHTTSS--TTSSSTS
T ss_pred CCCceehhcCCCCCccCCCcccc
Confidence 47899999996556666777654
No 84
>KOG2017|consensus
Probab=32.69 E-value=23 Score=34.89 Aligned_cols=69 Identities=13% Similarity=0.185 Sum_probs=44.3
Q ss_pred HHHHHhhhcccCCCCCCCCCCCceeeehhhhhcccccceEeEEcCCCCCCCCChhhhcccCeEEEchhchhhhh
Q psy9781 208 VRELKTKFDVSRPGLDKSFYGDRLTVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRVSKF 281 (288)
Q Consensus 208 ~s~L~rqf~~~~~~~~k~~~~~~l~fdd~~~~dFV~aaNLRA~~f~I~~~~~~~~~~~~f~~V~nALdn~~Ar~ 281 (288)
++||.||.+-....+|+.| .+=+.....+-++..|+..|+--... .-....|+++|+|+-.-||+-.|-
T Consensus 103 ~sNlhRQVlh~ea~vg~~K----a~sA~~~lr~lNs~v~v~~y~~~L~~-sNa~~Ii~~YdvVlDCTDN~~TRY 171 (427)
T KOG2017|consen 103 LSNLHRQVLHTEARVGMHK----AESAAAFLRRLNSHVEVQTYNEFLSS-SNAFDIIKQYDVVLDCTDNVPTRY 171 (427)
T ss_pred hhhHHHHHhhhhhhhhhHH----HHHHHHHHHhcCCCceeeechhhccc-hhHHHHhhccceEEEcCCCccchh
Confidence 6899999998777777776 11112333333434455544443332 223568999999999999987764
No 85
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=27.11 E-value=53 Score=31.51 Aligned_cols=22 Identities=14% Similarity=0.357 Sum_probs=18.8
Q ss_pred CcccCCCCeeecccCCCCceeEE
Q psy9781 1 MCLASEVPLIESGTAGYEGQVEL 23 (288)
Q Consensus 1 ~Cv~~~~PLIesGt~G~~Gqv~v 23 (288)
+|..++||+|+ +..||.|++.+
T Consensus 128 ~~~~~~k~~I~-aalGfdg~lvm 149 (307)
T cd01486 128 LSAAKNKLVIN-AALGFDSYLVM 149 (307)
T ss_pred HHHHhCCcEEE-EEeccceEEEE
Confidence 58899999998 57899999865
No 86
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=24.98 E-value=51 Score=31.24 Aligned_cols=62 Identities=11% Similarity=0.041 Sum_probs=44.9
Q ss_pred HHHHHhhhcccCCCCCCCCCCCceeeehhhhhcccccceEeEEcCCCCCCCCChhhhcccCeEEEchhchhhhh
Q psy9781 208 VRELKTKFDVSRPGLDKSFYGDRLTVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRVSKF 281 (288)
Q Consensus 208 ~s~L~rqf~~~~~~~~k~~~~~~l~fdd~~~~dFV~aaNLRA~~f~I~~~~~~~~~~~~f~~V~nALdn~~Ar~ 281 (288)
.+||+|||+... ++|+++ .+-..+...+.+|..++.++.-.|.. -.+|.+|+-+..+.+..+
T Consensus 63 ~SNL~RQfl~~~-dvGk~K----AeaAa~~L~eLNP~V~V~~i~~rld~-------~n~fqvvV~~~~~le~av 124 (287)
T PTZ00245 63 DADVCTNYLMQG-EAGGTR----GARALGALQRLNPHVSVYDAVTKLDG-------SSGTRVTMAAVITEEDAV 124 (287)
T ss_pred hhhhcccccccc-ccCCcH----HHHHHHHHHHHCCCcEEEEcccccCC-------cCCceEEEEEcccHHHHH
Confidence 578999999886 467775 44446777888888888888766643 247778888777766543
Done!