Query psy9781
Match_columns 288
No_of_seqs 194 out of 1063
Neff 6.0
Searched_HMMs 29240
Date Fri Aug 16 19:25:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9781.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9781hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1y8q_B Anthracycline-, ubiquit 100.0 2.2E-51 7.4E-56 415.9 6.6 262 1-286 128-399 (640)
2 3cmm_A Ubiquitin-activating en 100.0 7.3E-47 2.5E-51 399.6 -7.8 262 1-286 546-869 (1015)
3 1z7l_A Ubiquitin-activating en 100.0 3.6E-42 1.2E-46 318.0 -5.0 212 39-271 10-276 (276)
4 1tt5_B Ubiquitin-activating en 99.4 3.2E-14 1.1E-18 138.7 4.5 63 5-67 165-230 (434)
5 2nvu_B Maltose binding protein 99.2 2E-12 6.9E-17 133.8 4.1 64 4-67 535-601 (805)
6 3h8v_A Ubiquitin-like modifier 97.8 9.7E-06 3.3E-10 75.1 3.1 37 1-37 157-195 (292)
7 1tt5_A APPBP1, amyloid protein 97.8 5.1E-06 1.7E-10 82.8 1.3 58 1-61 144-201 (531)
8 1y8q_B Anthracycline-, ubiquit 97.7 6.2E-06 2.1E-10 83.8 0.5 76 208-287 54-129 (640)
9 3cmm_A Ubiquitin-activating en 97.6 5.7E-06 1.9E-10 88.1 -1.0 76 208-287 467-547 (1015)
10 1z7l_A Ubiquitin-activating en 97.3 2.5E-05 8.6E-10 71.8 -0.9 59 195-256 94-165 (276)
11 1tt5_B Ubiquitin-activating en 97.1 5.1E-05 1.8E-09 73.8 -1.1 74 208-287 77-150 (434)
12 2nvu_B Maltose binding protein 96.9 0.0001 3.5E-09 76.1 -0.6 74 208-287 448-521 (805)
13 3rui_A Ubiquitin-like modifier 96.8 0.00033 1.1E-08 66.2 1.9 36 1-37 159-201 (340)
14 1zud_1 Adenylyltransferase THI 96.6 0.00043 1.5E-08 62.0 0.7 36 2-37 139-175 (251)
15 3h5n_A MCCB protein; ubiquitin 96.6 0.0008 2.8E-08 63.4 2.4 37 1-37 229-266 (353)
16 3h8v_A Ubiquitin-like modifier 96.6 0.00039 1.3E-08 64.3 0.1 74 208-287 73-158 (292)
17 3rui_A Ubiquitin-like modifier 96.5 0.00035 1.2E-08 65.9 -0.3 76 208-287 71-160 (340)
18 1tt5_A APPBP1, amyloid protein 96.4 0.00052 1.8E-08 68.3 0.2 76 208-287 69-145 (531)
19 1jw9_B Molybdopterin biosynthe 96.4 0.00071 2.4E-08 60.5 0.8 36 2-37 142-178 (249)
20 1y8q_A Ubiquitin-like 1 activa 96.3 0.00084 2.9E-08 63.1 0.7 74 208-287 73-146 (346)
21 4gsl_A Ubiquitin-like modifier 96.1 0.0025 8.5E-08 64.4 3.3 36 1-37 451-493 (615)
22 4gsl_A Ubiquitin-like modifier 96.1 0.001 3.6E-08 67.2 0.0 76 208-287 363-452 (615)
23 3vh1_A Ubiquitin-like modifier 96.0 0.0013 4.5E-08 66.3 0.5 76 208-287 364-453 (598)
24 1jw9_B Molybdopterin biosynthe 95.0 0.0027 9.1E-08 56.7 -1.3 75 208-287 68-142 (249)
25 1zud_1 Adenylyltransferase THI 94.9 0.0021 7E-08 57.6 -2.2 74 208-286 65-138 (251)
26 3h5n_A MCCB protein; ubiquitin 94.7 0.0046 1.6E-07 58.2 -0.6 75 208-287 155-230 (353)
27 1y8q_A Ubiquitin-like 1 activa 94.1 0.0075 2.5E-07 56.6 -0.6 36 1-37 145-180 (346)
28 3vh1_A Ubiquitin-like modifier 93.0 0.049 1.7E-06 54.9 3.2 65 1-67 452-530 (598)
No 1
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A
Probab=100.00 E-value=2.2e-51 Score=415.86 Aligned_cols=262 Identities=47% Similarity=0.795 Sum_probs=206.4
Q ss_pred CcccCCCCeeecccCCCCceeEEEeCCCCCCCcCcCCCCCCCCCCCCCCCCCCCchhHHHHHHHHhhhcCCCCchHHhhh
Q psy9781 1 MCLASEVPLIESGTAGYEGQVELIKKGETKCYECDPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNLEGSAPGLLVLAQ 80 (288)
Q Consensus 1 ~Cv~~~~PLIesGt~G~~Gqv~viiP~~T~cy~c~~~~~~~~~P~CTir~~P~~p~HcI~WAk~lF~~~~~~~~~~~~~~ 80 (288)
+|+.+++|||++|+.|+.||+++++|+.|+||+|.+.|+++++|+||++++|+.|+|||+||+++|+
T Consensus 128 ~c~~~~iPlI~~g~~G~~G~v~vi~p~~t~Cy~C~~~p~~~~~p~Cti~~~p~~~~hci~~a~~~f~------------- 194 (640)
T 1y8q_B 128 MCLAADVPLIESGTAGYLGQVTTIKKGVTECYECHPKPTQRTFPGATIRNTPSEPIHCIVWAKYLFN------------- 194 (640)
T ss_dssp HHHHHTCCEEEEEEETTEEEEEEECTTTSCCTTSSCCCCCCCCCTTTTTSCCCSHHHHHHHHHHHHH-------------
T ss_pred HHHHcCCCEEEEEEecccceEEEECCCCCCCcccCCCCCCcccceeeecCCCCchHHHHHHHHHHHH-------------
Confidence 4889999999999999999999999999999999998888999999999999999999999999999
Q ss_pred cccCCCCCCCCcCCCCCCCchhhcC-hhHHHHhHHhhhcCcceeccccchhccccchHH-HHHHHhhHHHHHHHHhCCcc
Q psy9781 81 GQLFGEIDADEEVSPDTEDPEAVGD-AGAKAAASEATANGDVVRTSTRAWASACGYDPR-KLFAKFFDADIRYLISMSDL 158 (288)
Q Consensus 81 ~~lF~~~~~~~~~~~~~~dp~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~a~-~~f~~~F~~~I~~Ll~~~~~ 158 (288)
+|||..+..+++++++++|+.... ...+.+....+..+.+.+...+.|+ +|+.||+ ++|+++|+++|++||+|++|
T Consensus 195 -~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~~f~k~F~~~I~~Ll~~~~f 272 (640)
T 1y8q_B 195 -QLFGEEDADQEVSPDRADPEAAWEPTEAEARARASNEDGDIKRISTKEWA-KSTGYDPVKLFTKLFKDDIRYLLTMDKL 272 (640)
T ss_dssp -HHHSCCCGGGCCSCCTTCTTSCCC---------------------CHHHH-HHTTSCHHHHHHHHHTHHHHHHTTCGGG
T ss_pred -HHhCCcchhhhhcccccchhhhhhhhhhhhhhhhhhhhhHHHHHhhhhHH-HhHhHHHHHHHHHHHhhHHHHHHhCccc
Confidence 999998655678888888865311 1111122222334445555556786 7777776 59999999999999999999
Q ss_pred ccCCCCCCccccccchhhhhC-C-CC--cCCCCCCCCcccccHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCceeee
Q psy9781 159 WKTRKAPQPLVWDTLSDAVAG-S-SK--ETDGGGLKDQRVWSVAECARVFERSVRELKTKFDVSRPGLDKSFYGDRLTVA 234 (288)
Q Consensus 159 W~~rr~P~Pl~~~~~~~~~~~-~-~~--~~~~~~~~~q~~ws~~e~~~vf~~s~s~L~rqf~~~~~~~~k~~~~~~l~fd 234 (288)
|++||+|+||+|+.+...... . .. .....+++++.+|++.++.++|.+++.+|..++..... ..+++||
T Consensus 273 W~~kr~P~pl~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-------~~~~~Fd 345 (640)
T 1y8q_B 273 WRKRKPPVPLDWAEVQSQGEETNASDQQNEPQLGLKDQQVLDVKSYARLFSKSIETLRVHLAEKGD-------GAELIWD 345 (640)
T ss_dssp CSSSCCCCCCCHHHHHHC--------------CCCGGGSCCCHHHHHHHHHHHHHHHHHHHHHTCT-------TCCCCCC
T ss_pred ccCCCCCCCcccCccccccccccccccccccccCCChhhhcChhhhhhhHHHHHHHHHHHhhhccc-------CCCcccC
Confidence 999999999999986432210 0 00 01122457889999999999999999999999865431 4578998
Q ss_pred --hhhhhcccc-cceEeEEcCCCCCC-CCChhhhcccCeEEEchhchhhhhhheee
Q psy9781 235 --RNSALNFNP-DANIVAHHTSIISA-DFGVNYFKQFTLVMNALDNRVSKFSALLL 286 (288)
Q Consensus 235 --d~~~~dFV~-aaNLRA~~f~I~~~-~~~~~~~~~f~~V~nALdn~~Ar~~~l~~ 286 (288)
|+.||+||+ +|||||++|||++. .|.++.++| .|||||+|++|.++||+.
T Consensus 346 KDDd~h~dFV~aaaNlRA~~y~I~~~~~~~~K~iAG--~IIPAIATTnAiVaGl~~ 399 (640)
T 1y8q_B 346 KDDPSAMDFVTSAANLRMHIFSMNMKSRFDIKSMAG--NIIPAIATTNAVIAGLIV 399 (640)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHH--TCCCCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhC--CcccchhhHHHHHHHHHH
Confidence 788999999 99999999999988 568999999 999999999999999863
No 2
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.3e-47 Score=399.59 Aligned_cols=262 Identities=22% Similarity=0.342 Sum_probs=191.8
Q ss_pred CcccCCCCeeecccCCCCceeEEEeCCCCCCCcCcCCCCCCCCCCCCCCCCCCCchhHHHHHHHHhhhcCCCCchHHhhh
Q psy9781 1 MCLASEVPLIESGTAGYEGQVELIKKGETKCYECDPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNLEGSAPGLLVLAQ 80 (288)
Q Consensus 1 ~Cv~~~~PLIesGt~G~~Gqv~viiP~~T~cy~c~~~~~~~~~P~CTir~~P~~p~HcI~WAk~lF~~~~~~~~~~~~~~ 80 (288)
+|+.+++|||++|+.|++||+++++|+.|+||+|..+|+++++|+|||++||+.|+|||+|||++|+
T Consensus 546 ~c~~~~~Pli~~g~~G~~G~v~v~~p~~t~cy~c~~dp~~~~~P~Ctl~~~P~~~~h~i~wa~~~f~------------- 612 (1015)
T 3cmm_A 546 RCVFYRKPLLESGTLGTKGNTQVIIPRLTESYSSSRDPPEKSIPLCTLRSFPNKIDHTIAWAKSLFQ------------- 612 (1015)
T ss_dssp HHHHHTCCEEEEEEETTEEEEEEECTTTBCCGGGSCCCCCCCCCHHHHHTCCCSHHHHHHHHHHHHH-------------
T ss_pred HHHHcCCcEEEeCCCccccceEEEeCCCCCccCCCCCCCCCCCCcccccCCCCCcHHHHHHHHHHHH-------------
Confidence 4899999999999999999999999999999999999889999999999999999999999999999
Q ss_pred cccCCCCCCCCcCCCCCCCchhhcChhHHHHhHHhhhcCcce---eccccchhccccchHHHHHHHhhHHHHHHHHhC--
Q psy9781 81 GQLFGEIDADEEVSPDTEDPEAVGDAGAKAAASEATANGDVV---RTSTRAWASACGYDPRKLFAKFFDADIRYLISM-- 155 (288)
Q Consensus 81 ~~lF~~~~~~~~~~~~~~dp~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~c~~~a~~~f~~~F~~~I~~Ll~~-- 155 (288)
+||++. +++++.+++||++++....... .+.+....+. ..++.+|. +|+.||+++|+++|+++|++||++
T Consensus 613 -~lf~~~--~~~~~~~l~~~~~~~~~~~~~~-~~~~~l~~~~~~l~~~~~~~~-~c~~~a~~~f~~~F~~~I~~Ll~~~p 687 (1015)
T 3cmm_A 613 -GYFTDS--AENVNMYLTQPNFVEQTLKQSG-DVKGVLESISDSLSSKPHNFE-DCIKWARLEFEKKFNHDIKQLLFNFP 687 (1015)
T ss_dssp -HHHTHH--HHHHHHHHHCTTHHHHHHC----CCHHHHHHHHHHHHSCCSSHH-HHHHHHHHHHHHHHTHHHHHHHHHSC
T ss_pred -HHHhhh--hhhhhhhccCchhHHHHHhccc-hhHHHHHHHHHHhhcCCCcHH-HHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999986 4667788888865542111000 0000111111 12345675 999999999999999999999998
Q ss_pred --------CccccC-CCCCCccccccchhhh-------h-------CCCCc-----------------C-------C---
Q psy9781 156 --------SDLWKT-RKAPQPLVWDTLSDAV-------A-------GSSKE-----------------T-------D--- 185 (288)
Q Consensus 156 --------~~~W~~-rr~P~Pl~~~~~~~~~-------~-------~~~~~-----------------~-------~--- 185 (288)
++||++ ||+|+||+|+.....+ + +...+ . +
T Consensus 688 ~d~~~~~g~~fW~~~kr~P~pl~fd~~~~~h~~fi~~~a~l~a~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~ 767 (1015)
T 3cmm_A 688 KDAKTSNGEPFWSGAKRAPTPLEFDIYNNDHFHFVVAGASLRAYNYGIKSDDSNSKPNVDEYKSVIDHMIIPEFTPNANL 767 (1015)
T ss_dssp TTCBCSTTCBSSCTTCCCCCCCCCCTTSHHHHHHHHHHHHHHHHHHTCCCSSTTSSCCHHHHHHHHTTCCCCCCCCCSSC
T ss_pred cccccccCcccccCCCCCCCCcccCCCCHHHHHHHHHHHHhHHHhcCCCCccccccCCHHHHHHHHhhCcCCCcCCccCc
Confidence 799998 9999999999752211 0 00000 0 0
Q ss_pred CCCCCCcccccHHHHHHH-HHHHHHHHHhhhcccCCCCCCCCCCCceeee--hhh--hhcccc-cceEeEEcCCCCCC-C
Q psy9781 186 GGGLKDQRVWSVAECARV-FERSVRELKTKFDVSRPGLDKSFYGDRLTVA--RNS--ALNFNP-DANIVAHHTSIISA-D 258 (288)
Q Consensus 186 ~~~~~~q~~ws~~e~~~v-f~~s~s~L~rqf~~~~~~~~k~~~~~~l~fd--d~~--~~dFV~-aaNLRA~~f~I~~~-~ 258 (288)
.....++..+.- ..++ +.+++.+|..++...... .+....+++|| |+. |||||+ +|||||++|+|++. +
T Consensus 768 ki~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~~~FeKDDd~n~h~dFi~aasNlRa~ny~I~~~~~ 843 (1015)
T 3cmm_A 768 KIQVNDDDPDPN--ANAANGSDEIDQLVSSLPDPSTL--AGFKLEPVDFEKDDDTNHHIEFITACSNCRAQNYFIETADR 843 (1015)
T ss_dssp CCCSSTTSSCC-----------CCHHHHTTSCCGGGG--TTCCCCCCCCCTTCTTSSHHHHHHHHHHHHHHHTTCCCCCH
T ss_pred eeccchhhhccc--ccccccHHHHHHHHHHhccchhc--ccCCCCceeeecCCCchhHHHHHHHHHHHHHHHcCCCccCH
Confidence 000011111110 1123 667788888887654321 12235689998 444 999999 99999999999988 6
Q ss_pred CChhhhcccCeEEEchhchhhhhhheee
Q psy9781 259 FGVNYFKQFTLVMNALDNRVSKFSALLL 286 (288)
Q Consensus 259 ~~~~~~~~f~~V~nALdn~~Ar~~~l~~ 286 (288)
|+++.++| .||||++|++|.++||+.
T Consensus 844 ~~~k~iaG--~IIPAIaTT~AivaGl~~ 869 (1015)
T 3cmm_A 844 QKTKFIAG--RIIPAIATTTSLVTGLVN 869 (1015)
T ss_dssp HHHHHHHT--TCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHhC--CcCccchhHHHHHHHHHH
Confidence 68999999 999999999999999963
No 3
>1z7l_A Ubiquitin-activating enzyme E1 1; SCCH, second catalytic cysteine half-domain, ligase; HET: TBR; 2.80A {Mus musculus}
Probab=100.00 E-value=3.6e-42 Score=317.96 Aligned_cols=212 Identities=20% Similarity=0.301 Sum_probs=141.4
Q ss_pred CCCCCCCCCCCCCCCCchhHHHHHHHHhhhcCCCCchHHhhhcccCCCCCCCCcCCCCCCCchhhcChhH----HHHhHH
Q psy9781 39 AAKTYPGCTIRNTPSEPIHCIVWAKHLFNLEGSAPGLLVLAQGQLFGEIDADEEVSPDTEDPEAVGDAGA----KAAASE 114 (288)
Q Consensus 39 ~~~~~P~CTir~~P~~p~HcI~WAk~lF~~~~~~~~~~~~~~~~lF~~~~~~~~~~~~~~dp~~~~~~~~----~~~~~~ 114 (288)
-+++||+|||||||++|+|||+|||++|+ +||++. +++++.+++||++++.... +.+...
T Consensus 10 ~~ks~P~CTlrsfP~~i~HcI~WAr~lFe--------------~lF~~~--~~~~n~~l~dp~~~~~~~~~~~~~~~~~l 73 (276)
T 1z7l_A 10 FEKSIPICTLKNFPNAIEHTLQWARDEFE--------------GLFKQP--AENVNQYLTDSKFVERTLRLAGTQPLEVL 73 (276)
T ss_dssp ----CCHHHHHTCCCSHHHHHHHHHHHHH--------------HHHTHH--HHHHHHHTTCSHHHHHHHTSSTTHHHHHH
T ss_pred CCCCCceeccCCCCCChhHHHHHHHHHHH--------------HHHcCC--HHHHHHhhcChHHHHHHHhccchhhHHHH
Confidence 36899999999999999999999999999 999987 4678889999976542211 111111
Q ss_pred hhhcCcceeccccchhccccchHHHHHHHhhHHHHHHHHhC----------CccccC-CCCCCccccccchhhh------
Q psy9781 115 ATANGDVVRTSTRAWASACGYDPRKLFAKFFDADIRYLISM----------SDLWKT-RKAPQPLVWDTLSDAV------ 177 (288)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~c~~~a~~~f~~~F~~~I~~Ll~~----------~~~W~~-rr~P~Pl~~~~~~~~~------ 177 (288)
......+.+.++.+|. +|+.||+.+|+++|+++|++||+| ++||++ ||+|+||+|+......
T Consensus 74 ~~i~~~L~~~~p~~~~-~c~~~Ar~~F~k~F~~~I~qLL~~fP~D~~t~~G~~fWsg~Kr~P~PL~fd~~~~~h~~fI~a 152 (276)
T 1z7l_A 74 EAVQRSLVLQRPQTWG-DCVTWACHHWHTQYCNNIRQLLHNFPPDQLTSSGAPFWSGPKRCPHPLTFDVNNTLHLDYVMA 152 (276)
T ss_dssp HHHHHHHTTTCCSSHH-HHHHHHHHHHHHHHTHHHHHHHHHSCTTCBCTTSCBSSCSSCCCCCCCCCCTTSHHHHHHHHH
T ss_pred HHHHHHHhhcCCCcHH-HHHHHHHHHHHHHHHHHHHHHHHhCCccccccCCCcccCCCCCCCCCcccCCCchHHHHHHHH
Confidence 1111112233555674 799999999999999999999999 899998 9999999999753211
Q ss_pred -hCCCCc--CCCCCCCCccc-----------ccHHH--------------HHHHHHHHHHHHHhhhcccCCCCCCCCCCC
Q psy9781 178 -AGSSKE--TDGGGLKDQRV-----------WSVAE--------------CARVFERSVRELKTKFDVSRPGLDKSFYGD 229 (288)
Q Consensus 178 -~~~~~~--~~~~~~~~q~~-----------ws~~e--------------~~~vf~~s~s~L~rqf~~~~~~~~k~~~~~ 229 (288)
+..-.+ +-....+.+.+ |+..+ ...++.+++.+|..++...... .+.+..
T Consensus 153 aa~L~A~~~gi~~~~d~~~i~~~~~~~~vp~f~p~~~~ki~~~e~~~~~~~~~~~~~~~~~L~~~l~~~~~~--~~~~~~ 230 (276)
T 1z7l_A 153 AANLFAQTYGLTGSQDRAAVASLLQSVQVPEFTPKSGVKIHVSDQELQSANASVDDSRLEELKATLPSPDKL--PGFKMY 230 (276)
T ss_dssp HHHHHHHHTTCCCCCCHHHHHHHHHTCCCCCCCCCSSCCCCSSSCCC------CCSHHHHHHHHHSCCGGGS--TTCCCC
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHhcCCCCCcCCccccccccchhhhchhcccccHHHHHHHHHHhhhhhhc--ccccCC
Confidence 000000 00000000111 11111 1234667889999888654321 223366
Q ss_pred ceeee--hhh--hhcccc-cceEeEEcCCCCCC-CCChhhhcccCeEE
Q psy9781 230 RLTVA--RNS--ALNFNP-DANIVAHHTSIISA-DFGVNYFKQFTLVM 271 (288)
Q Consensus 230 ~l~fd--d~~--~~dFV~-aaNLRA~~f~I~~~-~~~~~~~~~f~~V~ 271 (288)
+++|| |+. |||||+ +|||||++|||+++ +|+++.|+| .||
T Consensus 231 pl~FeKDDd~N~hmdFItAaSNLRA~nY~I~~~dr~~~K~IAG--~II 276 (276)
T 1z7l_A 231 PIDFEKDDDSNFHMDFIVAASNLRAENYDISPADRHKSKLIAG--KII 276 (276)
T ss_dssp CCCCCSSCTTSSHHHHHHHHHHHHHHHTTCCCCCHHHHHHHTT--C--
T ss_pred CcceecCCCcccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhC--CcC
Confidence 89998 555 999999 99999999999988 668999998 654
No 4
>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*
Probab=99.44 E-value=3.2e-14 Score=138.67 Aligned_cols=63 Identities=41% Similarity=0.850 Sum_probs=58.7
Q ss_pred CCCCeeecccCCCCceeEEEeCCCCCCCcCcCC--CCCCCCCCCCCCCCCCCchhHHHHHHHH-hh
Q psy9781 5 SEVPLIESGTAGYEGQVELIKKGETKCYECDPK--PAAKTYPGCTIRNTPSEPIHCIVWAKHL-FN 67 (288)
Q Consensus 5 ~~~PLIesGt~G~~Gqv~viiP~~T~cy~c~~~--~~~~~~P~CTir~~P~~p~HcI~WAk~l-F~ 67 (288)
+++|||++|+.|+.||+++++|+.|+||+|.++ |+++.+|.||++++|+.|+|||+||+.+ |+
T Consensus 165 ~~iPli~~~~~g~~G~v~v~~p~~t~Cy~C~~~~~p~~~~~p~Ct~~~~p~~~~h~i~~a~~i~~~ 230 (434)
T 1tt5_B 165 SIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWP 230 (434)
T ss_dssp GCCCEEEEEEETTEEEEEEECTTTSCCGGGGGGGSCCCCCCCHHHHHHCCCSHHHHHHHHHHTHHH
T ss_pred cCCcEEEeccccceeEEEEECCCCCCCcccccCCCCCcCCCcccccccCCcchhHHHHHHHHHHHh
Confidence 599999999999999999999999999999985 6778899999999999999999999984 55
No 5
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=99.25 E-value=2e-12 Score=133.77 Aligned_cols=64 Identities=39% Similarity=0.814 Sum_probs=58.9
Q ss_pred cCCCCeeecccCCCCceeEEEeCCCCCCCcCcCC--CCCCCCCCCCCCCCCCCchhHHHHHHH-Hhh
Q psy9781 4 ASEVPLIESGTAGYEGQVELIKKGETKCYECDPK--PAAKTYPGCTIRNTPSEPIHCIVWAKH-LFN 67 (288)
Q Consensus 4 ~~~~PLIesGt~G~~Gqv~viiP~~T~cy~c~~~--~~~~~~P~CTir~~P~~p~HcI~WAk~-lF~ 67 (288)
.+++|||++|+.|+.||+++++|+.|+||+|..+ |++..+|.||++++|+.|+|||+||+. +|+
T Consensus 535 ~~~~p~i~~~~~g~~G~~~~~~p~~~~c~~c~~~~~p~~~~~~~c~~~~~~~~~~~~i~~a~~~~~~ 601 (805)
T 2nvu_B 535 SSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWP 601 (805)
T ss_dssp GGCCCEEEEEEETTEEEEEEECTTTSCCTTTSGGGSCCCCCCCHHHHHHCCCSHHHHHHHHHHTHHH
T ss_pred ccCCcEEEeccccCceeEEEECCCCCCceeccCCCCCCCCCCCccccCCCCCCccHHHHHHHHhhcc
Confidence 3599999999999999999999999999999974 677889999999999999999999997 455
No 6
>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*
Probab=97.77 E-value=9.7e-06 Score=75.05 Aligned_cols=37 Identities=32% Similarity=0.731 Sum_probs=34.3
Q ss_pred CcccCCCCeeecccCC--CCceeEEEeCCCCCCCcCcCC
Q psy9781 1 MCLASEVPLIESGTAG--YEGQVELIKKGETKCYECDPK 37 (288)
Q Consensus 1 ~Cv~~~~PLIesGt~G--~~Gqv~viiP~~T~cy~c~~~ 37 (288)
.|+.+++|||++|+.| +.||+++|+|+.|+||+|.+.
T Consensus 157 ~c~~~~~Pli~~gv~~~~~~Gqv~~~~pg~t~Cy~Cl~p 195 (292)
T 3h8v_A 157 ACNELGQTWMESGVSENAVSGHIQLIIPGESACFACAPP 195 (292)
T ss_dssp HHHHHTCCEEEEEECTTSSEEEEEEECTTTSCCTTSSSC
T ss_pred HHHHhCCCEEEeeeecceeEEEEEEECCCCCCCHhhcCC
Confidence 3889999999999986 899999999999999999985
No 7
>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*
Probab=97.77 E-value=5.1e-06 Score=82.76 Aligned_cols=58 Identities=22% Similarity=0.234 Sum_probs=48.7
Q ss_pred CcccCCCCeeecccCCCCceeEEEeCCCCCCCcCcCCCCCCCCCCCCCCCCCCCchhHHHH
Q psy9781 1 MCLASEVPLIESGTAGYEGQVELIKKGETKCYECDPKPAAKTYPGCTIRNTPSEPIHCIVW 61 (288)
Q Consensus 1 ~Cv~~~~PLIesGt~G~~Gqv~viiP~~T~cy~c~~~~~~~~~P~CTir~~P~~p~HcI~W 61 (288)
.|+.+++|||++|+.|+.||+.+++| ...|+++. |++...|.|+++.+|..|+||-..
T Consensus 144 ~c~~~~iplI~~~~~G~~G~v~~~~p-~~~~~d~~--~~~~~~~lr~~~p~P~~~~~~~~~ 201 (531)
T 1tt5_A 144 VLWNSQIPLLICRTYGLVGYMRIIIK-EHPVIESH--PDNALEDLRLDKPFPELREHFQSY 201 (531)
T ss_dssp HHHHTTCCEEEEEEETTEEEEEEECS-CEEESCCC--CSSCCCCCCSSSCCHHHHHHHHTC
T ss_pred HHHHcCCCEEEEEecCCeEEEEEEcC-CceeccCC--CCCCCCcccccCCCCCchhhhhcc
Confidence 38889999999999999999999999 45566654 445678999999999999999544
No 8
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A
Probab=97.69 E-value=6.2e-06 Score=83.78 Aligned_cols=76 Identities=43% Similarity=0.700 Sum_probs=66.9
Q ss_pred HHHHHhhhcccCCCCCCCCCCCceeeehhhhhcccccceEeEEcCCCCCCCCChhhhcccCeEEEchhchhhhhhheeec
Q psy9781 208 VRELKTKFDVSRPGLDKSFYGDRLTVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRVSKFSALLLC 287 (288)
Q Consensus 208 ~s~L~rqf~~~~~~~~k~~~~~~l~fdd~~~~dFV~aaNLRA~~f~I~~~~~~~~~~~~f~~V~nALdn~~Ar~~~l~~~ 287 (288)
.+||+|||+++..++|++| .+.+.+....++|..++.++...|....+...++.+||+|++|+||..||.+..-.|
T Consensus 54 ~SNLnRQflf~~~dVGk~K----Aeaaa~~L~~iNP~v~V~a~~~~i~~~~~~~~~~~~~DlVvda~Dn~~aR~~ln~~c 129 (640)
T 1y8q_B 54 VSNLNRQFLFQKKHVGRSK----AQVAKESVLQFYPKANIVAYHDSIMNPDYNVEFFRQFILVMNALDNRAARNHVNRMC 129 (640)
T ss_dssp GGGGGTCTTCCGGGTTSBH----HHHHHHHHHTTCTTCEEEEEESCTTSTTSCHHHHTTCSEEEECCSCHHHHHHHHHHH
T ss_pred hhhcCCCcCCChhHcChHH----HHHHHHHHHHHCCCCeEEEEecccchhhhhHhhhcCCCEEEECCCCHHHHHHHHHHH
Confidence 5789999999999999986 666677888899989999999999877788899999999999999999998876555
No 9
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}
Probab=97.63 E-value=5.7e-06 Score=88.07 Aligned_cols=76 Identities=24% Similarity=0.294 Sum_probs=66.6
Q ss_pred HHHHHhhhcccCCCCCCCCCCCceeeehhhhhcccccc--eEeEEcCCCCCC---CCChhhhcccCeEEEchhchhhhhh
Q psy9781 208 VRELKTKFDVSRPGLDKSFYGDRLTVARNSALNFNPDA--NIVAHHTSIISA---DFGVNYFKQFTLVMNALDNRVSKFS 282 (288)
Q Consensus 208 ~s~L~rqf~~~~~~~~k~~~~~~l~fdd~~~~dFV~aa--NLRA~~f~I~~~---~~~~~~~~~f~~V~nALdn~~Ar~~ 282 (288)
.+||+|||+++.+++|++| .+.+.+....++|.. +++++...|... .|+..+|.++|+|++|+||..||.+
T Consensus 467 ~SNLnRQ~lf~~~dvG~~K----a~~aa~~l~~iNP~v~~~v~~~~~~i~~~~~~~~~~~~~~~~D~Vi~a~Dn~~aR~~ 542 (1015)
T 3cmm_A 467 KSNLNRQFLFRPKDVGKNK----SEVAAEAVCAMNPDLKGKINAKIDKVGPETEEIFNDSFWESLDFVTNALDNVDARTY 542 (1015)
T ss_dssp GGGTTTCTTCCGGGTTSBH----HHHHHHHHHHHCGGGTTTEEEECCCCSGGGTTTSCHHHHHHCSEEEECCSSHHHHHH
T ss_pred cccccccccCChhhCCCHH----HHHHHHHHHHHCCCCcceEEEEecccCchhhhhccHhhhccCCEEEECCCCHHHHHH
Confidence 4899999999999999997 677778888999966 999999999752 4678899999999999999999998
Q ss_pred heeec
Q psy9781 283 ALLLC 287 (288)
Q Consensus 283 ~l~~~ 287 (288)
..-.|
T Consensus 543 ln~~c 547 (1015)
T 3cmm_A 543 VDRRC 547 (1015)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77666
No 10
>1z7l_A Ubiquitin-activating enzyme E1 1; SCCH, second catalytic cysteine half-domain, ligase; HET: TBR; 2.80A {Mus musculus}
Probab=97.30 E-value=2.5e-05 Score=71.80 Aligned_cols=59 Identities=17% Similarity=0.269 Sum_probs=43.3
Q ss_pred ccHHHHHHHHHHHHHHHHhhhc----------ccCCCCCCCCCCCceeee--hhhhhcccc-cceEeEEcCCCCC
Q psy9781 195 WSVAECARVFERSVRELKTKFD----------VSRPGLDKSFYGDRLTVA--RNSALNFNP-DANIVAHHTSIIS 256 (288)
Q Consensus 195 ws~~e~~~vf~~s~s~L~rqf~----------~~~~~~~k~~~~~~l~fd--d~~~~dFV~-aaNLRA~~f~I~~ 256 (288)
|...---.+|...+.+|...|. |.. |.+.+|.|++|| ++.|++||. +|||||.+|||+.
T Consensus 94 ~Ar~~F~k~F~~~I~qLL~~fP~D~~t~~G~~fWs---g~Kr~P~PL~fd~~~~~h~~fI~aaa~L~A~~~gi~~ 165 (276)
T 1z7l_A 94 WACHHWHTQYCNNIRQLLHNFPPDQLTSSGAPFWS---GPKRCPHPLTFDVNNTLHLDYVMAAANLFAQTYGLTG 165 (276)
T ss_dssp HHHHHHHHHHTHHHHHHHHHSCTTCBCTTSCBSSC---SSCCCCCCCCCCTTSHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCccccccCCCcccC---CCCCCCCCcccCCCchHHHHHHHHHHHHHHHHcCCCC
Confidence 4333334567777788877643 332 323458999999 789999999 9999999999985
No 11
>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*
Probab=97.10 E-value=5.1e-05 Score=73.76 Aligned_cols=74 Identities=20% Similarity=0.331 Sum_probs=61.4
Q ss_pred HHHHHhhhcccCCCCCCCCCCCceeeehhhhhcccccceEeEEcCCCCCCCCChhhhcccCeEEEchhchhhhhhheeec
Q psy9781 208 VRELKTKFDVSRPGLDKSFYGDRLTVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRVSKFSALLLC 287 (288)
Q Consensus 208 ~s~L~rqf~~~~~~~~k~~~~~~l~fdd~~~~dFV~aaNLRA~~f~I~~~~~~~~~~~~f~~V~nALdn~~Ar~~~l~~~ 287 (288)
.+||+||++++..++|++| .+.+.+...+++|..++.++...|.. .+..++.+||+|++|+||..+|....-.|
T Consensus 77 ~sNL~RQ~l~~~~diG~~K----a~~a~~~l~~lnp~v~v~~~~~~i~~--~~~~~~~~~DlVi~~~Dn~~~R~~in~~c 150 (434)
T 1tt5_B 77 VSNLNRQFLFRPKDIGRPK----AEVAAEFLNDRVPNCNVVPHFNKIQD--FNDTFYRQFHIIVCGLDSIIARRWINGML 150 (434)
T ss_dssp GGGTTTCTTCCGGGTTSBH----HHHHHHHHHHHSTTCCCEEEESCGGG--BCHHHHTTCSEEEECCSCHHHHHHHHHHH
T ss_pred hhccCCCcCCChhHcCcHH----HHHHHHHHHhhCCCCEEEEEecccch--hhHHHhcCCCEEEECCCCHHHHHHHHHHH
Confidence 4789999999999999986 55556777788888899999998875 45789999999999999999997654433
No 12
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=96.95 E-value=0.0001 Score=76.11 Aligned_cols=74 Identities=20% Similarity=0.331 Sum_probs=62.5
Q ss_pred HHHHHhhhcccCCCCCCCCCCCceeeehhhhhcccccceEeEEcCCCCCCCCChhhhcccCeEEEchhchhhhhhheeec
Q psy9781 208 VRELKTKFDVSRPGLDKSFYGDRLTVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRVSKFSALLLC 287 (288)
Q Consensus 208 ~s~L~rqf~~~~~~~~k~~~~~~l~fdd~~~~dFV~aaNLRA~~f~I~~~~~~~~~~~~f~~V~nALdn~~Ar~~~l~~~ 287 (288)
.+||+||++++..++|++| .+...+...+++|..+++++.-.|.. .+..++.+||+|+.|+||..+|....-.|
T Consensus 448 ~snl~rq~~~~~~~vg~~K----a~~~~~~l~~~np~~~v~~~~~~~~~--~~~~~~~~~d~vv~~~d~~~~r~~in~~~ 521 (805)
T 2nvu_B 448 VSNLNRQFLFRPKDIGRPK----AEVAAEFLNDRVPNCNVVPHFNKIQD--FNDTFYRQFHIIVCGLDSIIARRWINGML 521 (805)
T ss_dssp GGGGGTCTTCCGGGTTSBH----HHHHHHHHHHHSTTCEEEEEESCGGG--SCHHHHHTCSEEEECCSCHHHHHHHHHHH
T ss_pred ccccccccccchhhcCChH----HHHHHHHHHHHCCCCEEEEEeccccc--cHHHHHhcCCEEEECCCCHHHHHHHHHHH
Confidence 5899999999999999986 66667778888998899999999975 45789999999999999999996554433
No 13
>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*
Probab=96.84 E-value=0.00033 Score=66.16 Aligned_cols=36 Identities=14% Similarity=0.398 Sum_probs=31.2
Q ss_pred CcccCCCCeeecccCCCCceeEEEe-------CCCCCCCcCcCC
Q psy9781 1 MCLASEVPLIESGTAGYEGQVELIK-------KGETKCYECDPK 37 (288)
Q Consensus 1 ~Cv~~~~PLIesGt~G~~Gqv~vii-------P~~T~cy~c~~~ 37 (288)
+|+.++||+|++| .|+.||++++- |+.++||+|.+.
T Consensus 159 ~c~~~~~plI~aa-~G~~G~l~v~~g~~~~~~~~~~~Cy~C~~~ 201 (340)
T 3rui_A 159 LSNIENKTVINAA-LGFDSYLVMRHGNRDEQSSKQLGCYFCHDV 201 (340)
T ss_dssp HHHHTTCEEEEEE-ECSSEEEEEECCCCCSSCCCCBCCGGGGSS
T ss_pred HHHHcCCcEEEee-ecceEEEEEeecccccCCCCCCCeeeeCCC
Confidence 4889999999987 99999998863 678999999973
No 14
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A
Probab=96.59 E-value=0.00043 Score=62.05 Aligned_cols=36 Identities=31% Similarity=0.657 Sum_probs=33.6
Q ss_pred cccCCCCeeecccCCCCceeEEEeCCC-CCCCcCcCC
Q psy9781 2 CLASEVPLIESGTAGYEGQVELIKKGE-TKCYECDPK 37 (288)
Q Consensus 2 Cv~~~~PLIesGt~G~~Gqv~viiP~~-T~cy~c~~~ 37 (288)
|..+++|+|++|+.|+.||+.++.|+. ++||+|.+.
T Consensus 139 ~~~~~~p~i~~~~~g~~G~v~~~~p~~~~~c~~cl~~ 175 (251)
T 1zud_1 139 CVALNTPLITASAVGFGGQLMVLTPPWEQGCYRCLWP 175 (251)
T ss_dssp HHHTTCCEEEEEEEBTEEEEEEECTTCTTCCHHHHCC
T ss_pred HHHhCCCEEEEeccccceEEEEEccCCCCCcEEEeCC
Confidence 778999999999999999999999998 799999874
No 15
>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A
Probab=96.56 E-value=0.0008 Score=63.40 Aligned_cols=37 Identities=27% Similarity=0.586 Sum_probs=32.8
Q ss_pred CcccCCCCeeecccCCCCceeEEE-eCCCCCCCcCcCC
Q psy9781 1 MCLASEVPLIESGTAGYEGQVELI-KKGETKCYECDPK 37 (288)
Q Consensus 1 ~Cv~~~~PLIesGt~G~~Gqv~vi-iP~~T~cy~c~~~ 37 (288)
.|+.+++|+|++|+.|..|++.++ +|+.|+||+|.+.
T Consensus 229 ~c~~~~~p~i~~~~~g~~g~~g~~~~p~~~~C~~C~~~ 266 (353)
T 3h5n_A 229 YCVRANQPYINAGYVNDIAVFGPLYVPGKTGCYECQKV 266 (353)
T ss_dssp HHHHTTCCEEEEEEETTEEEEEEEECTTTSCCTTTTC-
T ss_pred HHHHhCCCEEEEEEeCCEEEEEEEEcCCCCCChhhcCC
Confidence 388999999999999999999765 5999999999974
No 16
>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*
Probab=96.55 E-value=0.00039 Score=64.26 Aligned_cols=74 Identities=22% Similarity=0.377 Sum_probs=48.3
Q ss_pred HHHHHhhhcccCCCCCCCCCCCceeeehhhhhcccccceEeEEcCCCCCC-CCChhhh-----------cccCeEEEchh
Q psy9781 208 VRELKTKFDVSRPGLDKSFYGDRLTVARNSALNFNPDANIVAHHTSIISA-DFGVNYF-----------KQFTLVMNALD 275 (288)
Q Consensus 208 ~s~L~rqf~~~~~~~~k~~~~~~l~fdd~~~~dFV~aaNLRA~~f~I~~~-~~~~~~~-----------~~f~~V~nALd 275 (288)
.+||+||+ +...++|++| .+.+.+....++|..+++++...|... .+ ..++ .++|+|+.++|
T Consensus 73 ~sNL~Rq~-~~~~diG~~K----a~aa~~~L~~iNP~v~v~~~~~~l~~~~~~-~~~~~~~~~~~l~~~~~~DlVid~~D 146 (292)
T 3h8v_A 73 LANMNRLF-FQPHQAGLSK----VQAAEHTLRNINPDVLFEVHNYNITTVENF-QHFMDRISNGGLEEGKPVDLVLSCVD 146 (292)
T ss_dssp ------------CCTTSBH----HHHHHHHHHHHCTTSEEEEECCCTTSHHHH-HHHHHHHHHBSSSTTBCCSEEEECCS
T ss_pred hhhccccc-CChhhcCchH----HHHHHHHHHhhCCCcEEEEecccCCcHHHH-HHHhhhhcccccccCCCCCEEEECCc
Confidence 57999987 5778899987 555566777888899999999998752 22 2333 68999999999
Q ss_pred chhhhhhheeec
Q psy9781 276 NRVSKFSALLLC 287 (288)
Q Consensus 276 n~~Ar~~~l~~~ 287 (288)
|..+|...+-.|
T Consensus 147 n~~~R~~in~~c 158 (292)
T 3h8v_A 147 NFEARMTINTAC 158 (292)
T ss_dssp SHHHHHHHHHHH
T ss_pred chhhhhHHHHHH
Confidence 999997765444
No 17
>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*
Probab=96.53 E-value=0.00035 Score=65.92 Aligned_cols=76 Identities=17% Similarity=0.093 Sum_probs=60.9
Q ss_pred HHHHHhhhcccCCCCCCCCCCCceeeehhhhhcccccceEeEEcCCCCCCC------------C--ChhhhcccCeEEEc
Q psy9781 208 VRELKTKFDVSRPGLDKSFYGDRLTVARNSALNFNPDANIVAHHTSIISAD------------F--GVNYFKQFTLVMNA 273 (288)
Q Consensus 208 ~s~L~rqf~~~~~~~~k~~~~~~l~fdd~~~~dFV~aaNLRA~~f~I~~~~------------~--~~~~~~~f~~V~nA 273 (288)
.+||+||++++..++|++| .+...+....++|..+++++..+|+... . -..++.++|+|+++
T Consensus 71 ~SNL~RQ~l~~~~diG~~K----a~aaa~~L~~inP~v~v~~~~~~i~~~g~~~~~~~~~~~~~~~l~~~l~~~DlVvd~ 146 (340)
T 3rui_A 71 YSNPVRQALYNFEDCGKPK----AELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLL 146 (340)
T ss_dssp TTSTTTSTTCCGGGTTSBH----HHHHHHHHHHHCTTCEEEEECCCCCCTTSCCSCHHHHHHHHHHHHHHHHHCSEEEEC
T ss_pred cccccccccCChhhcChHH----HHHHHHHHHHhCCCCEEEEEeccccccCcccchhhhhcCCHHHHHhhhccCCEEEec
Confidence 4789999999999999986 5555667788888899999999886321 1 14689999999999
Q ss_pred hhchhhhhhheeec
Q psy9781 274 LDNRVSKFSALLLC 287 (288)
Q Consensus 274 Ldn~~Ar~~~l~~~ 287 (288)
.||..+|.....+|
T Consensus 147 tDn~~tR~lin~~c 160 (340)
T 3rui_A 147 VDSRESRWLPSLLS 160 (340)
T ss_dssp CSSTGGGHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 99999998766555
No 18
>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*
Probab=96.43 E-value=0.00052 Score=68.26 Aligned_cols=76 Identities=16% Similarity=0.115 Sum_probs=61.9
Q ss_pred HHHHHhhhcccCCCCCCCCCCCceeeehhhhhcccccceEeEEcCCCCCC-CCChhhhcccCeEEEchhchhhhhhheee
Q psy9781 208 VRELKTKFDVSRPGLDKSFYGDRLTVARNSALNFNPDANIVAHHTSIISA-DFGVNYFKQFTLVMNALDNRVSKFSALLL 286 (288)
Q Consensus 208 ~s~L~rqf~~~~~~~~k~~~~~~l~fdd~~~~dFV~aaNLRA~~f~I~~~-~~~~~~~~~f~~V~nALdn~~Ar~~~l~~ 286 (288)
.+||+|||+++..++|++| .+...+...+++|..++.++.-.+... +...+++.+||+|+.++||..+|....-+
T Consensus 69 ~sNL~RQ~l~~~~dvG~~K----a~~a~~~l~~lNp~v~v~~~~~~~~~~~~~~~~~~~~~DvVi~~~d~~~~r~~ln~~ 144 (531)
T 1tt5_A 69 GEDAGNNFFLQRSSIGKNR----AEAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTSLRLADV 144 (531)
T ss_dssp HHHHHHCTTCCGGGBTSBH----HHHHHHHHHTTCTTSBCCEESSCHHHHHHSCGGGGGGCSEEEEESCCHHHHHHHHHH
T ss_pred hhhcccCccCChhhcCcHH----HHHHHHHHHHhCCCCeEEEeCCCcchhhhhhHHHhcCCCEEEEeCCCHHHHHHHHHH
Confidence 5799999999999999986 555567788888888999988777531 34567899999999999999999876554
Q ss_pred c
Q psy9781 287 C 287 (288)
Q Consensus 287 ~ 287 (288)
|
T Consensus 145 c 145 (531)
T 1tt5_A 145 L 145 (531)
T ss_dssp H
T ss_pred H
Confidence 4
No 19
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*
Probab=96.38 E-value=0.00071 Score=60.50 Aligned_cols=36 Identities=31% Similarity=0.778 Sum_probs=33.1
Q ss_pred cccCCCCeeecccCCCCceeEEEeCCC-CCCCcCcCC
Q psy9781 2 CLASEVPLIESGTAGYEGQVELIKKGE-TKCYECDPK 37 (288)
Q Consensus 2 Cv~~~~PLIesGt~G~~Gqv~viiP~~-T~cy~c~~~ 37 (288)
|...++|+|++|+.|+.||+.++.|+. ++||+|.+.
T Consensus 142 ~~~~~~p~i~~~~~g~~g~v~~~~p~~~~~c~~c~~~ 178 (249)
T 1jw9_B 142 CFAAKVPLVSGAAIRMEGQITVFTYQDGEPCYRCLSR 178 (249)
T ss_dssp HHHHTCCEEEEEEEBTEEEEEEECCCTTCCCTHHHHT
T ss_pred HHHcCCCEEEeeeccceEEEEEEeCCCCCCceEEECC
Confidence 677899999999999999999999988 799999874
No 20
>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*
Probab=96.29 E-value=0.00084 Score=63.12 Aligned_cols=74 Identities=16% Similarity=0.203 Sum_probs=60.4
Q ss_pred HHHHHhhhcccCCCCCCCCCCCceeeehhhhhcccccceEeEEcCCCCCCCCChhhhcccCeEEEchhchhhhhhheeec
Q psy9781 208 VRELKTKFDVSRPGLDKSFYGDRLTVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRVSKFSALLLC 287 (288)
Q Consensus 208 ~s~L~rqf~~~~~~~~k~~~~~~l~fdd~~~~dFV~aaNLRA~~f~I~~~~~~~~~~~~f~~V~nALdn~~Ar~~~l~~~ 287 (288)
.+||+|||+++..++|++| .+...+...+.+|..++.++...|.. ...+++.+||+|+.+.||..+|..-.-+|
T Consensus 73 ~sNL~rq~~~~~~diG~~K----a~~~~~~l~~lnp~v~v~~~~~~~~~--~~~~~~~~~dvVv~~~d~~~~r~~ln~~~ 146 (346)
T 1y8q_A 73 PEDPGAQFLIRTGSVGRNR----AEASLERAQNLNPMVDVKVDTEDIEK--KPESFFTQFDAVCLTCCSRDVIVKVDQIC 146 (346)
T ss_dssp SSCGGGCTTSCSSCTTSBH----HHHHHHHHHHTCTTSEEEEECSCGGG--CCHHHHTTCSEEEEESCCHHHHHHHHHHH
T ss_pred hhhCCCCCccccccCcCCH----HHHHHHHHHhHCCCeEEEEEecccCc--chHHHhcCCCEEEEcCCCHHHHHHHHHHH
Confidence 3589999999999999986 55556677778888899999888864 45778999999999999999987654444
No 21
>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A
Probab=96.14 E-value=0.0025 Score=64.44 Aligned_cols=36 Identities=14% Similarity=0.398 Sum_probs=30.3
Q ss_pred CcccCCCCeeecccCCCCceeEEEe-------CCCCCCCcCcCC
Q psy9781 1 MCLASEVPLIESGTAGYEGQVELIK-------KGETKCYECDPK 37 (288)
Q Consensus 1 ~Cv~~~~PLIesGt~G~~Gqv~vii-------P~~T~cy~c~~~ 37 (288)
+|+.++||+|++| .|+.||+.++- |+.++||+|...
T Consensus 451 ~c~~~~~PlI~aa-lG~~Gql~v~~g~~~~~~~~~~~CY~Cl~~ 493 (615)
T 4gsl_A 451 LSNIENKTVINAA-LGFDSYLVMRHGNRDEQSSKQLGCYFCHDV 493 (615)
T ss_dssp HHHHTTCEEEEEE-ECSSEEEEEECCC------CCCCCTTTSCS
T ss_pred HHHHcCCeEEEEE-ccceeEEEEeecccccCCCCCCCceeeCCC
Confidence 4899999999987 99999998753 578999999963
No 22
>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A
Probab=96.05 E-value=0.001 Score=67.16 Aligned_cols=76 Identities=16% Similarity=0.062 Sum_probs=62.1
Q ss_pred HHHHHhhhcccCCCCCCCCCCCceeeehhhhhcccccceEeEEcCCCCCCCC--------------ChhhhcccCeEEEc
Q psy9781 208 VRELKTKFDVSRPGLDKSFYGDRLTVARNSALNFNPDANIVAHHTSIISADF--------------GVNYFKQFTLVMNA 273 (288)
Q Consensus 208 ~s~L~rqf~~~~~~~~k~~~~~~l~fdd~~~~dFV~aaNLRA~~f~I~~~~~--------------~~~~~~~f~~V~nA 273 (288)
.+||+||++++..++|++| .+.+.+...+.+|..+++++..+|+.... ...++.++|+|++|
T Consensus 363 ~SNL~RQ~L~~~~dIG~~K----Aeaaa~~L~~iNP~V~v~~~~~~Ipm~gh~v~~e~~~~l~~~~l~~ll~~~DlVvd~ 438 (615)
T 4gsl_A 363 YSNPVRQALYNFEDCGKPK----AELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLL 438 (615)
T ss_dssp TTGGGTSTTCCGGGTTSBH----HHHHHHHHHHHCTTCEEEEECCCCCCTTCCCSCHHHHHHHHHHHHHHHHHCSEEEEC
T ss_pred ccCcccccCCChhhcChHH----HHHHHHHHHhhCCCcEEEEeeccccccCccccchhhhcCCHHHHHHHhhcCCEEEec
Confidence 5799999999999999987 55556777888889999999998864211 13578999999999
Q ss_pred hhchhhhhhheeec
Q psy9781 274 LDNRVSKFSALLLC 287 (288)
Q Consensus 274 Ldn~~Ar~~~l~~~ 287 (288)
.||..+|.....+|
T Consensus 439 tDn~~tR~~ln~~c 452 (615)
T 4gsl_A 439 VDSRESRWLPSLLS 452 (615)
T ss_dssp CSSGGGTHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 99999998776665
No 23
>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A
Probab=96.00 E-value=0.0013 Score=66.26 Aligned_cols=76 Identities=17% Similarity=0.113 Sum_probs=60.8
Q ss_pred HHHHHhhhcccCCCCCCCCCCCceeeehhhhhcccccceEeEEcCCCCCCC------------CC--hhhhcccCeEEEc
Q psy9781 208 VRELKTKFDVSRPGLDKSFYGDRLTVARNSALNFNPDANIVAHHTSIISAD------------FG--VNYFKQFTLVMNA 273 (288)
Q Consensus 208 ~s~L~rqf~~~~~~~~k~~~~~~l~fdd~~~~dFV~aaNLRA~~f~I~~~~------------~~--~~~~~~f~~V~nA 273 (288)
.+||+||++++..++|+.| .+.+.+...+.+|..+++++...|+... .+ .+++.++|+|++|
T Consensus 364 ~SNL~RQ~L~~~~DvG~~K----Aeaaa~~L~~iNP~v~v~~~~~~I~~pgh~i~~~~~~~l~~~~l~~li~~~DvVvda 439 (598)
T 3vh1_A 364 YSNPVRQALYNFEDCGKPK----AELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLL 439 (598)
T ss_dssp TTSTTTSTTCCSTTCSSBH----HHHHHHHHHHHCTTCEEEEECCCCCCSSCCCCSHHHHHHHHHHHHHHHHHCSEEEEC
T ss_pred ccccccccccchhhcCcHH----HHHHHHHHHhHCCCcEEEEEeccccccCcccccccccccCHHHHHHHHhcCCEEEEC
Confidence 5799999999999999987 5555667777788899999998885321 11 3588999999999
Q ss_pred hhchhhhhhheeec
Q psy9781 274 LDNRVSKFSALLLC 287 (288)
Q Consensus 274 Ldn~~Ar~~~l~~~ 287 (288)
.||..+|..-..+|
T Consensus 440 tDn~~tR~lin~~c 453 (598)
T 3vh1_A 440 VDSRESRWLPSLLS 453 (598)
T ss_dssp CSBGGGTHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 99999997766555
No 24
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*
Probab=94.98 E-value=0.0027 Score=56.71 Aligned_cols=75 Identities=17% Similarity=0.236 Sum_probs=54.1
Q ss_pred HHHHHhhhcccCCCCCCCCCCCceeeehhhhhcccccceEeEEcCCCCCCCCChhhhcccCeEEEchhchhhhhhheeec
Q psy9781 208 VRELKTKFDVSRPGLDKSFYGDRLTVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRVSKFSALLLC 287 (288)
Q Consensus 208 ~s~L~rqf~~~~~~~~k~~~~~~l~fdd~~~~dFV~aaNLRA~~f~I~~~~~~~~~~~~f~~V~nALdn~~Ar~~~l~~~ 287 (288)
.+||+||+++...++|+.| .+...+...+.+|..++.++...+..... .+++.++|+|+.|.||..+|....-+|
T Consensus 68 ~sNl~Rq~l~~~~diG~~K----a~~~~~~l~~~np~~~v~~~~~~~~~~~~-~~~~~~~DvVi~~~d~~~~~~~l~~~~ 142 (249)
T 1jw9_B 68 LSNLQRQTLHSDATVGQPK----VESARDALTRINPHIAITPVNALLDDAEL-AALIAEHDLVLDCTDNVAVRNQLNAGC 142 (249)
T ss_dssp GGGGGTCTTCCGGGTTSBH----HHHHHHHHHHHCTTSEEEEECSCCCHHHH-HHHHHTSSEEEECCSSHHHHHHHHHHH
T ss_pred cccCCcccccChhhcCcHH----HHHHHHHHHHHCCCcEEEEEeccCCHhHH-HHHHhCCCEEEEeCCCHHHHHHHHHHH
Confidence 4789999999999999886 44334444566676788887766653211 346889999999999999887554433
No 25
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A
Probab=94.93 E-value=0.0021 Score=57.59 Aligned_cols=74 Identities=14% Similarity=0.211 Sum_probs=55.0
Q ss_pred HHHHHhhhcccCCCCCCCCCCCceeeehhhhhcccccceEeEEcCCCCCCCCChhhhcccCeEEEchhchhhhhhheee
Q psy9781 208 VRELKTKFDVSRPGLDKSFYGDRLTVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRVSKFSALLL 286 (288)
Q Consensus 208 ~s~L~rqf~~~~~~~~k~~~~~~l~fdd~~~~dFV~aaNLRA~~f~I~~~~~~~~~~~~f~~V~nALdn~~Ar~~~l~~ 286 (288)
.+||+||+++...++|+.| .+...+...+.+|..++.++...+.... -.+++.++|+|++|.||..+|..-.-.
T Consensus 65 ~sNL~Rq~l~~~~diG~~K----a~~~~~~l~~~np~~~v~~~~~~~~~~~-~~~~~~~~DvVi~~~d~~~~r~~l~~~ 138 (251)
T 1zud_1 65 LSNLQRQILFTTEDIDRPK----SQVSQQRLTQLNPDIQLTALQQRLTGEA-LKDAVARADVVLDCTDNMATRQEINAA 138 (251)
T ss_dssp GGGTTTCTTCCGGGTTSBH----HHHHHHHHHHHCTTSEEEEECSCCCHHH-HHHHHHHCSEEEECCSSHHHHHHHHHH
T ss_pred cccCCCCccCChhhCCCHH----HHHHHHHHHHHCCCCEEEEEeccCCHHH-HHHHHhcCCEEEECCCCHHHHHHHHHH
Confidence 4789999999999998886 4444455566777788888877665321 135788999999999999988654433
No 26
>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A
Probab=94.68 E-value=0.0046 Score=58.16 Aligned_cols=75 Identities=12% Similarity=0.021 Sum_probs=58.2
Q ss_pred HHHHHhhhcccCCCCCCCCCCCceeeehhhhhcccccceEeEEcCCCCCCCCChhhhcccCeEEEchhchh-hhhhheee
Q psy9781 208 VRELKTKFDVSRPGLDKSFYGDRLTVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRV-SKFSALLL 286 (288)
Q Consensus 208 ~s~L~rqf~~~~~~~~k~~~~~~l~fdd~~~~dFV~aaNLRA~~f~I~~~~~~~~~~~~f~~V~nALdn~~-Ar~~~l~~ 286 (288)
.+||+||+++...++|++| .+...+.....+|..++.++...|.....-.. +.++|+|+.+.||.. +|....-+
T Consensus 155 ~sNL~Rq~l~~~~diG~~K----a~~~~~~l~~~np~v~v~~~~~~i~~~~~~~~-~~~~DlVvd~~Dn~~~~r~~ln~~ 229 (353)
T 3h5n_A 155 NTNLTRQVLFSEDDVGKNK----TEVIKRELLKRNSEISVSEIALNINDYTDLHK-VPEADIWVVSADHPFNLINWVNKY 229 (353)
T ss_dssp GGGGGTCTTCCGGGTTSBH----HHHHHHHHHHHCTTSEEEEEECCCCSGGGGGG-SCCCSEEEECCCCSTTHHHHHHHH
T ss_pred ccccccccCCChHHCCChH----HHHHHHHHHHHCCCCeEEEeecccCchhhhhH-hccCCEEEEecCChHHHHHHHHHH
Confidence 5789999999999999886 55556667778888899999999876541123 899999999999998 77654433
Q ss_pred c
Q psy9781 287 C 287 (288)
Q Consensus 287 ~ 287 (288)
|
T Consensus 230 c 230 (353)
T 3h5n_A 230 C 230 (353)
T ss_dssp H
T ss_pred H
Confidence 3
No 27
>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*
Probab=94.05 E-value=0.0075 Score=56.59 Aligned_cols=36 Identities=19% Similarity=0.298 Sum_probs=30.2
Q ss_pred CcccCCCCeeecccCCCCceeEEEeCCCCCCCcCcCC
Q psy9781 1 MCLASEVPLIESGTAGYEGQVELIKKGETKCYECDPK 37 (288)
Q Consensus 1 ~Cv~~~~PLIesGt~G~~Gqv~viiP~~T~cy~c~~~ 37 (288)
.|..+++|+|.+|+.|+.||+.+.++ .+.|+.|..+
T Consensus 145 ~~~~~~ip~i~~~~~G~~G~v~~d~~-~~~~~~~~~~ 180 (346)
T 1y8q_A 145 ICHKNSIKFFTGDVFGYHGYTFANLG-EHEFVEEKTK 180 (346)
T ss_dssp HHHHTTCEEEEEEEEBTEEEEEEECS-EEEEEEECC-
T ss_pred HHHHcCCCEEEEeecccEEEEEEecC-CCCEEEcCCC
Confidence 38889999999999999999999885 6778777644
No 28
>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A
Probab=93.01 E-value=0.049 Score=54.90 Aligned_cols=65 Identities=17% Similarity=0.371 Sum_probs=41.1
Q ss_pred CcccCCCCeeecccCCCCceeEEEe---C----CCCCCCcCcCC--CCCCC-----CCCCCCCCCCCCchhHHHHHHHHh
Q psy9781 1 MCLASEVPLIESGTAGYEGQVELIK---K----GETKCYECDPK--PAAKT-----YPGCTIRNTPSEPIHCIVWAKHLF 66 (288)
Q Consensus 1 ~Cv~~~~PLIesGt~G~~Gqv~vii---P----~~T~cy~c~~~--~~~~~-----~P~CTir~~P~~p~HcI~WAk~lF 66 (288)
+|+.+++|+|++ +.|+.||+.++- | +.++||+|... |.... -+.|++- -|---...-..|.+..
T Consensus 452 ~c~~~~~plI~a-a~G~~Gqv~v~~g~~p~~~~~~~~Cy~Cl~~~~p~~~~~~~tld~~C~Vl-~p~vgvigslqA~Eal 529 (598)
T 3vh1_A 452 LSNIENKTVINA-ALGFDSYLVMRHGNRDEQSSKQLGCYFCHDVVAPTDSLTDRTLDQMCTVT-RPGVAMMASSLAVELM 529 (598)
T ss_dssp HHHHTTCEEEEE-EECSSEEEEEEEC--------CBCCTTTSCSSCSSSCTTTTTTTBSCCCS-CTHHHHHHHHHHHHHH
T ss_pred HHHhcCCCEEEE-EECCccEEEEEccCCCccCCCCCCceeecCccCCCccccccccCCCCCcc-CcHHHHHHHHHHHHHH
Confidence 488999999995 689999998764 3 36889999853 22111 2457742 2222233444566766
Q ss_pred h
Q psy9781 67 N 67 (288)
Q Consensus 67 ~ 67 (288)
.
T Consensus 530 k 530 (598)
T 3vh1_A 530 T 530 (598)
T ss_dssp H
T ss_pred H
Confidence 6
Done!