RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9781
(288 letters)
>gnl|CDD|238766 cd01489, Uba2_SUMO, Ubiquitin activating enzyme (E1) subunit UBA2.
UBA2 is part of the heterodimeric activating enzyme
(E1), specific for the SUMO family of ubiquitin-like
proteins (Ubls). E1 enzymes are part of a conjugation
cascade to attach Ub or Ubls, covalently to substrate
proteins consisting of activating (E1), conjugating
(E2), and/or ligating (E3) enzymes. E1 activates
ubiquitin by C-terminal adenylation, and subsequently
forms a highly reactive thioester bond between its
catalytic cysteine and Ubls C-terminus. The E1 also
associates with E2 and promotes ubiquitin transfer to
the E2's catalytic cysteine. Post-translational
modification by SUMO family of ubiquitin-like proteins
(Ublps) is involved in cell division, nuclear transport,
the stress response and signal transduction. UBA2
contains both the nucleotide-binding motif involved in
adenylation and the catalytic cysteine involved in the
thioester intermediate and Ublp transfer to E2.
Length = 312
Score = 147 bits (373), Expect = 2e-42
Identities = 49/68 (72%), Positives = 59/68 (86%)
Query: 1 MCLASEVPLIESGTAGYEGQVELIKKGETKCYECDPKPAAKTYPGCTIRNTPSEPIHCIV 60
MCLA++VPLIESGT G+ GQV++IKKG+T+CYEC PK KT+P CTIR+TPS+PIHCIV
Sbjct: 110 MCLAADVPLIESGTTGFLGQVQVIKKGKTECYECQPKETPKTFPVCTIRSTPSQPIHCIV 169
Query: 61 WAKHLFNL 68
WAK LF L
Sbjct: 170 WAKSLFFL 177
Score = 79.0 bits (195), Expect = 6e-17
Identities = 25/46 (54%), Positives = 32/46 (69%)
Query: 232 TVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNR 277
VA+ + L+FNP+ IVA+H +I DF V +FKQF LV NALDN
Sbjct: 56 QVAKEAVLSFNPNVKIVAYHANIKDPDFNVEFFKQFDLVFNALDNL 101
Score = 56.2 bits (136), Expect = 4e-09
Identities = 20/35 (57%), Positives = 23/35 (65%)
Query: 140 LFAKFFDADIRYLISMSDLWKTRKAPQPLVWDTLS 174
LF K F DI L+SM +LWKTRK P PL W L+
Sbjct: 177 LFNKVFKDDIERLLSMEELWKTRKPPVPLSWKELT 211
>gnl|CDD|238761 cd01484, E1-2_like, Ubiquitin activating enzyme (E1), repeat
2-like. E1, a highly conserved small protein present
universally in eukaryotic cells, is part of cascade to
attach ubiquitin (Ub) covalently to substrate proteins.
This cascade consists of activating (E1), conjugating
(E2), and/or ligating (E3) enzymes and then targets them
for degradation by the 26S proteasome. E1 activates
ubiquitin by C-terminal adenylation, and subsequently
forms a highly reactive thioester bond between its
catalytic cysteine and ubiquitin's C-terminus. E1 also
associates with E2 and promotes ubiquitin transfer to
the E2's catalytic cysteine. A set of novel molecules
with a structural similarity to Ub, called Ub-like
proteins (Ubls), have similar conjugation cascades. In
contrast to ubiquitin-E1, which is a single-chain
protein with a weakly conserved two-fold repeat, many of
the Ubls-E1are a heterodimer where each subunit
corresponds to one half of a single-chain E1. This CD
represents the family homologous to the second repeat of
Ub-E1.
Length = 234
Score = 93.0 bits (231), Expect = 1e-22
Identities = 31/66 (46%), Positives = 40/66 (60%)
Query: 1 MCLASEVPLIESGTAGYEGQVELIKKGETKCYECDPKPAAKTYPGCTIRNTPSEPIHCIV 60
M + VPLIESGT G++G ++I G T+C EC P K +P CTI + P P HCI
Sbjct: 111 MLIFLIVPLIESGTEGFKGNAQVILPGMTECIECTLYPPQKNFPMCTIASMPRLPEHCIE 170
Query: 61 WAKHLF 66
WA+ L
Sbjct: 171 WARMLQ 176
Score = 40.6 bits (95), Expect = 4e-04
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 10/62 (16%)
Query: 216 DVSRPGLDKSFYGDRLTVARNSALNFNPDANIVAHHTSIIS-ADFGVNYFKQFTLVMNAL 274
D+ RP KS VA + + NP+ +V + + DF +F+QF +++NAL
Sbjct: 49 DIGRP---KS------EVAAEAVNDRNPNCKVVPYQNKVGPEQDFNDTFFEQFHIIVNAL 99
Query: 275 DN 276
DN
Sbjct: 100 DN 101
>gnl|CDD|192635 pfam10585, UBA_e1_thiolCys, Ubiquitin-activating enzyme active
site. Ubiquitin-activating enzyme (E1 enzyme)
activates ubiquitin by first adenylating with ATP its
C-terminal glycine residue and thereafter linking this
residue to the side chain of a cysteine residue in E1,
yielding an ubiquitin-E1 thiolester and free AMP. Later
the ubiquitin moiety is transferred to a cysteine
residue on one of the many forms of
ubiquitin-conjugating enzymes (E2). This domain carries
the last of five conserved cysteines that is part of
the active site of the enzyme, responsible for
ubiquitin thiolester complex formation, the active site
being represented by the sequence motif PICTLKNFP.
Length = 44
Score = 81.8 bits (203), Expect = 2e-20
Identities = 22/40 (55%), Positives = 27/40 (67%)
Query: 29 TKCYECDPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNL 68
T+CYEC P P K+ P CT+R+ PS P HCI WA+ LF
Sbjct: 2 TECYECSPDPPEKSIPVCTLRSFPSTPEHCIEWARDLFEG 41
>gnl|CDD|238765 cd01488, Uba3_RUB, Ubiquitin activating enzyme (E1) subunit UBA3.
UBA3 is part of the heterodimeric activating enzyme
(E1), specific for the Rub family of ubiquitin-like
proteins (Ubls). E1 enzymes are part of a conjugation
cascade to attach Ub or Ubls, covalently to substrate
proteins. consisting of activating (E1), conjugating
(E2), and/or ligating (E3) enzymes. E1 activates
ubiquitin(-like) by C-terminal adenylation, and
subsequently forms a highly reactive thioester bond
between its catalytic cysteine and Ubls C-terminus. E1
also associates with E2 and promotes ubiquitin transfer
to the E2's catalytic cysteine. Post-translational
modification by Rub family of ubiquitin-like proteins
(Ublps) activates SCF ubiquitin ligases and is involved
in cell cycle control, signaling and embryogenesis. UBA3
contains both the nucleotide-binding motif involved in
adenylation and the catalytic cysteine involved in the
thioester intermediate and Ublp transfer to E2.
Length = 291
Score = 67.0 bits (164), Expect = 8e-13
Identities = 28/59 (47%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 7 VPLIESGTAGYEGQVELIKKGETKCYEC--DPKPAAKTYPGCTIRNTPSEPIHCIVWAK 63
+PLI+ GT G++G +I G T C EC D P T+P CTI NTP P HCI +A
Sbjct: 122 IPLIDGGTEGFKGHARVILPGITACIECSLDLFPPQVTFPLCTIANTPRLPEHCIEYAS 180
Score = 29.2 bits (66), Expect = 2.1
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 243 PDANIVAHHTSIISADFGVNYFKQFTLVMNALD 275
P N+ H I D +++QF +++ LD
Sbjct: 67 PGVNVTPHFGKI--QDKDEEFYRQFNIIICGLD 97
>gnl|CDD|238767 cd01490, Ube1_repeat2, Ubiquitin activating enzyme (E1), repeat 2.
E1, a highly conserved small protein present universally
in eukaryotic cells, is part of cascade to attach
ubiquitin (Ub) covalently to substrate proteins. This
cascade consists of activating (E1), conjugating (E2),
and/or ligating (E3) enzymes and then targets them for
degradation by the 26S proteasome. E1 activates
ubiquitin by C-terminal adenylation, and subsequently
forms a highly reactive thioester bond between its
catalytic cysteine and ubiquitin's C-terminus. E1 also
associates with E2 and promotes ubiquitin transfer to
the E2's catalytic cysteine. Ubiquitin-E1 is a
single-chain protein with a weakly conserved two-fold
repeat. This CD represents the second repeat of Ub-E1.
Length = 435
Score = 60.8 bits (148), Expect = 2e-10
Identities = 23/65 (35%), Positives = 35/65 (53%)
Query: 2 CLASEVPLIESGTAGYEGQVELIKKGETKCYECDPKPAAKTYPGCTIRNTPSEPIHCIVW 61
C+ PL+ESGT G +G +++ T+ Y P K+ P CT++N P+ H I W
Sbjct: 119 CVYYRKPLLESGTLGTKGNTQVVIPHLTESYSSSRDPPEKSIPLCTLKNFPNAIEHTIQW 178
Query: 62 AKHLF 66
A+ F
Sbjct: 179 ARDEF 183
Score = 32.6 bits (75), Expect = 0.20
Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 14/65 (21%)
Query: 216 DVSRPGLDKSFYGDRLTVARNSALNFNPDANIVAHHTSIISAD----FGVNYFKQFTLVM 271
DV +P KS VA + NPD I A + + F ++++ V
Sbjct: 54 DVGKP---KS------EVAAAAVKAMNPDLKITALQNRV-GPETEHIFNDEFWEKLDGVA 103
Query: 272 NALDN 276
NALDN
Sbjct: 104 NALDN 108
>gnl|CDD|130475 TIGR01408, Ube1, ubiquitin-activating enzyme E1. This model
represents the full length, over a thousand amino acids,
of a multicopy family of eukaryotic proteins, many of
which are designated ubiquitin-activating enzyme E1.
Members have two copies of the ThiF family domain
(pfam00899), a repeat found in ubiquitin-activating
proteins (pfam02134), and other regions.
Length = 1008
Score = 57.6 bits (139), Expect = 3e-09
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 2 CLASEVPLIESGTAGYEGQVELIKKGETKCYECDPKPAAKTYPGCTIRNTPSEPIHCIVW 61
CLA PL+ESGT G +G +++ T+ Y P K P CT+++ P+ H I W
Sbjct: 539 CLAFLKPLLESGTLGTKGNTQVVVPHLTESYGSSRDPPEKEIPFCTLKSFPAAIEHTIQW 598
Query: 62 AKHLFNLEGS 71
A+ F EG
Sbjct: 599 ARDKF--EGL 606
Score = 31.0 bits (70), Expect = 0.77
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 232 TVARNSALNFNPDANIVAHHTSIISAD---FGVNYFKQFTLVMNALDN 276
A ++ L NP I AH + F ++++ +V+NALDN
Sbjct: 481 YTAADATLKINPQIKIDAHQNRVGPETETIFNDEFYEKLDVVINALDN 528
>gnl|CDD|238386 cd00757, ThiF_MoeB_HesA_family, ThiF_MoeB_HesA. Family of E1-like
enzymes involved in molybdopterin and thiamine
biosynthesis family. The common reaction mechanism
catalyzed by MoeB and ThiF, like other E1 enzymes,
begins with a nucleophilic attack of the C-terminal
carboxylate of MoaD and ThiS, respectively, on the
alpha-phosphate of an ATP molecule bound at the active
site of the activating enzymes, leading to the formation
of a high-energy acyladenylate intermediate and
subsequently to the formation of a thiocarboxylate at
the C termini of MoaD and ThiS. MoeB, as the MPT
synthase (MoaE/MoaD complex) sulfurase, is involved in
the biosynthesis of the molybdenum cofactor, a
derivative of the tricyclic pterin, molybdopterin (MPT).
ThiF catalyzes the adenylation of ThiS, as part of the
biosynthesis pathway of thiamin pyrophosphate (vitamin
B1). .
Length = 228
Score = 39.4 bits (93), Expect = 8e-04
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 2 CLASEVPLIESGTAGYEGQVELIKKGETKCYEC-DPKPAAKTYPGC 46
C+ PL+ G+EGQV + GE CY C P+P P C
Sbjct: 132 CVKLGKPLVSGAVLGFEGQVTVFIPGEGPCYRCLFPEPPPPGVPSC 177
Score = 30.1 bits (69), Expect = 0.92
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 233 VARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDN 276
A NPD I A++ + A+ + LV++ DN
Sbjct: 79 AAAERLRAINPDVEIEAYNE-RLDAENAEELIAGYDLVLDCTDN 121
>gnl|CDD|216180 pfam00899, ThiF, ThiF family. This family contains a repeated
domain in ubiquitin activating enzyme E1 and members of
the bacterial ThiF/MoeB/HesA family.
Length = 134
Score = 35.6 bits (83), Expect = 0.008
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 232 TVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRVSKFSALLLCV 288
VA+ NPD + A+ + + + K LV++ALDN +++ CV
Sbjct: 58 EVAKERLRAINPDVEVEAYPERL-TPENLEELLKGVDLVVDALDNFAARYLLNDACV 113
Score = 27.9 bits (63), Expect = 3.0
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 1 MCLASEVPLIESGTAGYEGQV 21
C+ +PLI +G G++GQV
Sbjct: 111 ACVKRGIPLISAGALGFDGQV 131
>gnl|CDD|178402 PLN02805, PLN02805, D-lactate dehydrogenase [cytochrome].
Length = 555
Score = 34.2 bits (78), Expect = 0.069
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 117 ANGDVVRTSTRAWASACGYDPRKL 140
NGDVV+T++RA SA GYD +L
Sbjct: 263 PNGDVVKTASRARKSAAGYDLTRL 286
>gnl|CDD|223552 COG0476, ThiF, Dinucleotide-utilizing enzymes involved in
molybdopterin and thiamine biosynthesis family 2
[Coenzyme metabolism].
Length = 254
Score = 31.2 bits (71), Expect = 0.43
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 2 CLASEVPLIESGTAGYEGQVELIKKGE-TKCYEC---DPKPAAKTYPGC 46
C+ +PL+ G G+EGQV +I G+ T CY C + P C
Sbjct: 141 CVKLGIPLVHGGAIGFEGQVTVIIPGDKTPCYRCLFPEKPPPGLVPTSC 189
>gnl|CDD|193256 pfam12780, AAA_8, P-loop containing dynein motor region D4. The
380 kDa motor unit of dynein belongs to the AAA class of
chaperone-like ATPases. The core of the 380 kDa motor
unit contains a concatenated chain of six AAA modules,
of which four correspond to the ATP binding sites with
P-loop signatures described previously, and two are
modules in which the P loop has been lost in evolution.
This particular family is the D4 ATP-binding region of
the motor.
Length = 268
Score = 30.3 bits (68), Expect = 1.0
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 147 ADIRYLISMSDLWKTRKAPQPLVWDTLSDAVAGSSKETDGGGLKDQRVWSVAECARVF-E 205
AD ++L+ ++DL + + P + D + + ++ E GL D R C + F +
Sbjct: 101 ADEQFLVLINDLLASGEIPDLFMDDEVENIISSVRNEVKSLGLNDTR----ENCWKFFID 156
Query: 206 RSVRELKT 213
R R+LK
Sbjct: 157 RVRRQLKV 164
>gnl|CDD|162820 TIGR02356, adenyl_thiF, thiazole biosynthesis adenylyltransferase
ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF
family of proteins (pfam00899) include a number of
members encoded in the midst of thiamine biosynthetic
operons. This mix of known and putative ThiF proteins
shows a deep split in phylogenetic trees, with the
Escherichia. coli ThiF and the E. coli MoeB proteins
seemingly more closely related than E. coli ThiF and
Campylobacter (for example) ThiF. This model represents
the more widely distributed clade of ThiF proteins such
found in E. coli [Biosynthesis of cofactors, prosthetic
groups, and carriers, Thiamine].
Length = 202
Score = 30.0 bits (68), Expect = 1.1
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 2 CLASEVPLIESGTAGYEGQVELI-KKGETKCYECDPKPAAKTYPGCTIR 49
C+A PLI + G+ GQ+ + GE C C A T P C
Sbjct: 132 CVALGTPLISAAVVGFGGQLMVFDPGGEGPCLRCLFPDIADTGPSCATA 180
>gnl|CDD|235118 PRK03348, PRK03348, DNA polymerase IV; Provisional.
Length = 454
Score = 30.3 bits (69), Expect = 1.3
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 74 GLLVLAQGQLFGEIDADEEVSPDTEDPEAVGDAGAKAAASEATANG 119
GL + Q LF E+D E E+ E AG + + A
Sbjct: 343 GLSDVRQESLFPELDLARET-APAEEVETESAAGPSDSPAAARVEA 387
>gnl|CDD|223075 PHA03398, PHA03398, viral phosphatase superfamily protein;
Provisional.
Length = 303
Score = 29.8 bits (68), Expect = 1.6
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 257 ADFGVNYFKQFTLVMNALDN 276
GVNYFK TLV + N
Sbjct: 245 RKKGVNYFKTITLVDDLKSN 264
>gnl|CDD|181156 PRK07878, PRK07878, molybdopterin biosynthesis-like protein MoeZ;
Validated.
Length = 392
Score = 29.7 bits (67), Expect = 1.8
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 234 ARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDN 276
AR+S + NP N+ H + V F Q+ L+++ DN
Sbjct: 101 ARDSIVEINPLVNVRLHEFRL-DPSNAVELFSQYDLILDGTDN 142
>gnl|CDD|182678 PRK10724, PRK10724, hypothetical protein; Provisional.
Length = 158
Score = 28.7 bits (64), Expect = 2.3
Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 201 ARVFERSVRELKTKFDVSRPGLDKSFYGDRLTVARNSALNFN 242
+RV E + ++ DVS+ G+ K+F R + N ++
Sbjct: 50 SRVLESTPGQMTAAVDVSKAGISKTFT-TRNQLTSNQSILMQ 90
>gnl|CDD|218468 pfam05152, DUF705, Protein of unknown function (DUF705). This
family contains several uncharacterized Baculovirus
proteins.
Length = 297
Score = 29.1 bits (66), Expect = 2.6
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 257 ADFGVNYFKQFTLVMNALDN 276
G+NYFK TLV + N
Sbjct: 239 RKKGINYFKTITLVDDLKSN 258
>gnl|CDD|131408 TIGR02355, moeB, molybdopterin synthase sulfurylase MoeB. This
model describes the molybdopterin biosynthesis protein
MoeB in E. coli and related species. The enzyme
covalently modifies the molybdopterin synthase MoaD by
sulfurylation. This enzyme is closely related to ThiF, a
thiamine biosynthesis enzyme that modifies ThiS by an
analogous adenylation. Both MoeB and ThiF belong to the
HesA/MoeB/ThiF family (pfam00899) [Biosynthesis of
cofactors, prosthetic groups, and carriers,
Molybdopterin].
Length = 240
Score = 28.6 bits (64), Expect = 3.2
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 2 CLASEVPLIESGTAGYEGQVELIK-KGETKCYEC 34
C A++VPL+ EGQV + + CY C
Sbjct: 135 CFAAKVPLVSGAAIRMEGQVSVFTYQDGEPCYRC 168
>gnl|CDD|165216 PHA02889, PHA02889, hypothetical protein; Provisional.
Length = 241
Score = 28.5 bits (63), Expect = 4.0
Identities = 16/81 (19%), Positives = 37/81 (45%), Gaps = 13/81 (16%)
Query: 200 CARVFERSVRELKTKFDVSRPGLDKSF------YGDRLTVARNSALNFNPDANIVAHHTS 253
C + S++E+++ F +D S + L NS+ ++ NI+ HT+
Sbjct: 108 CMGKGQDSLQEIESIF------IDDSLITKEDDFVKNLVSETNSSEEYDNITNIIIEHTN 161
Query: 254 IISADFGVNYFKQFTLVMNAL 274
+ +F + +K + L++ +
Sbjct: 162 NTTKNF-FHNYKLYNLILIPI 181
>gnl|CDD|181879 PRK09464, pdhR, transcriptional regulator PdhR; Reviewed.
Length = 254
Score = 28.1 bits (63), Expect = 5.4
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 209 RELKTKFDVSRPGL 222
REL +FDVSRP L
Sbjct: 38 RELAKQFDVSRPSL 51
>gnl|CDD|211992 TIGR04269, SAM_SPASM_FxsB, radical SAM/SPASM domain, FxsB family.
This model describes a radical SAM (pfam04055)/SPASM
domain (TIGR04085) fusion subfamily distinct from PqqE,
MftC, anaerobic sulfatase maturases, and other peptide
maturases. The combined region described in this model
can itself be fused to another domain, such as
TIGR04267, or stand alone. Members occurring in the same
cassette as a member of family TIGR04268 should be
designated FxsB.
Length = 363
Score = 27.8 bits (62), Expect = 7.9
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 137 PRKLFAKFFDADIRYLISMSDLWKTRKAPQPL-VWDTLSDAVAGSSKETDGGGLKD 191
PR+ A R+L+++ D W P P+ +D+L + G T+ GL
Sbjct: 205 PRRAPDGSPTAYARWLLAVFDRWLADGRPMPVRTFDSLLSTLRGGPSLTEALGLGP 260
>gnl|CDD|185167 PRK15255, PRK15255, fimbrial outer membrane usher protein StdB;
Provisional.
Length = 829
Score = 27.8 bits (61), Expect = 8.9
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 158 LWKTRKAPQPLVWDTLSDAVAG----SSKETDGGGLKDQRVWSVAECARVFERSVRELKT 213
L++TR +P P LS ++G S +E+DG R W V + F +++
Sbjct: 296 LYQTRVSPGPFELPDLSQNISGNLDVSVRESDG----SVRTWQVNTASVPFMARQGQVRY 351
Query: 214 KFDVSRP 220
K RP
Sbjct: 352 KVAAGRP 358
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.133 0.402
Gapped
Lambda K H
0.267 0.0580 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,529,613
Number of extensions: 1359815
Number of successful extensions: 1144
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1140
Number of HSP's successfully gapped: 44
Length of query: 288
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 192
Effective length of database: 6,679,618
Effective search space: 1282486656
Effective search space used: 1282486656
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.4 bits)