RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9781
(288 letters)
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO,
heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens}
PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A
Length = 640
Score = 215 bits (548), Expect = 1e-65
Identities = 118/234 (50%), Positives = 144/234 (61%), Gaps = 19/234 (8%)
Query: 1 MCLASEVPLIESGTAGYEGQVELIKKGETKCYECDPKPAAKTYPGCTIRNTPSEPIHCIV 60
MCLA++VPLIESGTAGY GQV IKKG T+CYEC PKP +T+PG TIRNTPSEPIHCIV
Sbjct: 128 MCLAADVPLIESGTAGYLGQVTTIKKGVTECYECHPKPTQRTFPGATIRNTPSEPIHCIV 187
Query: 61 WAKHLFNLEGSAPGLLVLAQGQLFGEIDADEEVSPDTEDPEAVGDAG-AKAAASEATANG 119
WAK+LFN QLFGE DAD+EVSPD DPEA + A+A A + +G
Sbjct: 188 WAKYLFN--------------QLFGEEDADQEVSPDRADPEAAWEPTEAEARARASNEDG 233
Query: 120 DVVRTSTRAWASACGYDPRKLFAKFFDADIRYLISMSDLWKTRKAPQPLVWDTLSD---- 175
D+ R ST+ WA + GYDP KLF K F DIRYL++M LW+ RK P PL W +
Sbjct: 234 DIKRISTKEWAKSTGYDPVKLFTKLFKDDIRYLLTMDKLWRKRKPPVPLDWAEVQSQGEE 293
Query: 176 AVAGSSKETDGGGLKDQRVWSVAECARVFERSVRELKTKFDVSRPGLDKSFYGD 229
A + GLKDQ+V V AR+F +S+ L+ G + + D
Sbjct: 294 TNASDQQNEPQLGLKDQQVLDVKSYARLFSKSIETLRVHLAEKGDGAELIWDKD 347
Score = 59.0 bits (142), Expect = 4e-10
Identities = 30/61 (49%), Positives = 38/61 (62%), Gaps = 9/61 (14%)
Query: 216 DVSRPGLDKSFYGDRLTVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALD 275
V R K+ VA+ S L F P ANIVA+H SI++ D+ V +F+QF LVMNALD
Sbjct: 67 HVGRS---KA------QVAKESVLQFYPKANIVAYHDSIMNPDYNVEFFRQFILVMNALD 117
Query: 276 N 276
N
Sbjct: 118 N 118
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase,
conformationa thioester, adenylation,
transthioesterification, ATP-bindin nucleotide-binding;
2.70A {Saccharomyces cerevisiae}
Length = 1015
Score = 120 bits (302), Expect = 7e-31
Identities = 56/226 (24%), Positives = 84/226 (37%), Gaps = 36/226 (15%)
Query: 1 MCLASEVPLIESGTAGYEGQVELIKKGETKCYECDPKPAAKTYPGCTIRNTPSEPIHCIV 60
C+ PL+ESGT G +G ++I T+ Y P K+ P CT+R+ P++ H I
Sbjct: 546 RCVFYRKPLLESGTLGTKGNTQVIIPRLTESYSSSRDPPEKSIPLCTLRSFPNKIDHTIA 605
Query: 61 WAKHLFNLEGSAPGLLVLAQGQLFGEIDADEEVSPDTEDPEAVGDAGAKAAASEATANG- 119
WAK LF F D+ E V+ P V ++ +
Sbjct: 606 WAKSLFQ--------------GYFT--DSAENVNMYLTQPNFVEQTLKQSGDVKGVLESI 649
Query: 120 DVVRTSTRAWASACGYDPRKLFAKFFDADIRYLI----------SMSDLWK-TRKAPQPL 168
+S C R F K F+ DI+ L+ + W ++AP PL
Sbjct: 650 SDSLSSKPHNFEDCIKWARLEFEKKFNHDIKQLLFNFPKDAKTSNGEPFWSGAKRAPTPL 709
Query: 169 VWDT-----LSDAVAGSSKETDGGGLK---DQRVWSVAECARVFER 206
+D VAG+S G+K +V E V +
Sbjct: 710 EFDIYNNDHFHFVVAGASLRAYNYGIKSDDSNSKPNVDEYKSVIDH 755
Score = 50.2 bits (119), Expect = 4e-07
Identities = 11/66 (16%), Positives = 20/66 (30%), Gaps = 3/66 (4%)
Query: 1 MCLASEVPLIESGTAGYEGQVELIKKGETKCYECDPKPAAKTYPGCTIRNTPSEPIHCIV 60
C +S + I S T G G + E + + +T I + +
Sbjct: 134 FCHSSGIRFISSETRGLFGNTFVDLGDEFTVLDPTGEE-PRTGMVSDIEPDG--TVTMLD 190
Query: 61 WAKHLF 66
+H
Sbjct: 191 DNRHGL 196
Score = 44.1 bits (103), Expect = 4e-05
Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 5/64 (7%)
Query: 230 RLTVARNSALNFNPDANIVAHH-----TSIISADFGVNYFKQFTLVMNALDNRVSKFSAL 284
+ VA + NPD + F ++++ V NALDN ++
Sbjct: 485 KSEVAAEAVCAMNPDLKGKINAKIDKVGPETEEIFNDSFWESLDFVTNALDNVDARTYVD 544
Query: 285 LLCV 288
CV
Sbjct: 545 RRCV 548
Score = 34.4 bits (78), Expect = 0.041
Identities = 8/49 (16%), Positives = 14/49 (28%), Gaps = 6/49 (12%)
Query: 230 RLTVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLV-MNALDNR 277
R V R N +++ + V QF +V +
Sbjct: 82 RGDVTRAKLAELNAY-----VPVNVLDSLDDVTQLSQFQVVVATDTVSL 125
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic
subunit chimera; multifunction macromolecular complex,
ubiquitin, ATP, conformational change, thioester,
switch, adenylation, protein turnover, ligase; HET: ATP;
2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Length = 805
Score = 113 bits (285), Expect = 1e-28
Identities = 35/117 (29%), Positives = 49/117 (41%), Gaps = 18/117 (15%)
Query: 4 ASEVPLIESGTAGYEGQVELIKKGETKCYEC--DPKPAAKTYPGCTIRNTPSEPIHCIVW 61
+S VPLI+ GT G++G +I G T C EC + P +P CTI + P P HCI +
Sbjct: 535 SSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEY 594
Query: 62 AKHLFNLEGSAPGLLVLAQGQLFGEIDADEEVSPDTEDPEAVGDAGAKAAASEATAN 118
+ L E E V D +DPE + K+ + N
Sbjct: 595 VRMLQ----------------WPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYN 635
Score = 59.9 bits (145), Expect = 2e-10
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 11/61 (18%)
Query: 216 DVSRPGLDKSFYGDRLTVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALD 275
D+ RP K+ VA + P+ N+V H I DF +++QF +++ LD
Sbjct: 461 DIGRP---KA------EVAAEFLNDRVPNCNVVPHFNKI--QDFNDTFYRQFHIIVCGLD 509
Query: 276 N 276
+
Sbjct: 510 S 510
>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase;
2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B
3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*
Length = 434
Score = 101 bits (252), Expect = 1e-24
Identities = 40/169 (23%), Positives = 63/169 (37%), Gaps = 34/169 (20%)
Query: 3 LASEVPLIESGTAGYEGQVELIKKGETKCYECDPK--PAAKTYPGCTIRNTPSEPIHCIV 60
+S VPLI+ GT G++G +I G T C EC + P +P CTI + P P HCI
Sbjct: 163 PSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIE 222
Query: 61 WAKHLFNLEGSAPGLLVLAQGQLFGEIDADEEVSPDTEDPEAVGDAGAKAAA-------- 112
+ + L E E V D +DPE + K+
Sbjct: 223 YVRMLQ----------------WPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIR 266
Query: 113 ------SEATANGDV--VRTSTRAWASACGYDPRKLFAKFFDADIRYLI 153
++ + V ++ A+ C + K+ + YL+
Sbjct: 267 GVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLV 315
Score = 57.2 bits (138), Expect = 2e-09
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 11/61 (18%)
Query: 216 DVSRPGLDKSFYGDRLTVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALD 275
D+ RP K+ VA + P+ N+V H I DF +++QF +++ LD
Sbjct: 90 DIGRP---KA------EVAAEFLNDRVPNCNVVPHFNKI--QDFNDTFYRQFHIIVCGLD 138
Query: 276 N 276
+
Sbjct: 139 S 139
>1z7l_A Ubiquitin-activating enzyme E1 1; SCCH, second catalytic cysteine
half-domain, ligase; HET: TBR; 2.80A {Mus musculus}
Length = 276
Score = 88.5 bits (218), Expect = 1e-20
Identities = 29/156 (18%), Positives = 49/156 (31%), Gaps = 32/156 (20%)
Query: 31 CYECDPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNLEGSAPGLLVLAQGQLFGEIDAD 90
+ K+ P CT++N P+ H + WA+ F LF
Sbjct: 2 GHHHHHHEFEKSIPICTLKNFPNAIEHTLQWARDEFE--------------GLFK--QPA 45
Query: 91 EEVSPDTEDPEAV----GDAGAKAAASEATANGDVVRTSTRAWASACGYDPRKLFAKFFD 146
E V+ D + V AG + +V + W C + +
Sbjct: 46 ENVNQYLTDSKFVERTLRLAGTQPLEVLEAVQRSLVLQRPQTWGD-CVTWACHHWHTQYC 104
Query: 147 ADIRYLISM----------SDLWK-TRKAPQPLVWD 171
+IR L+ + W ++ P PL +D
Sbjct: 105 NNIRQLLHNFPPDQLTSSGAPFWSGPKRCPHPLTFD 140
>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase;
2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A
3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*
Length = 531
Score = 52.4 bits (125), Expect = 7e-08
Identities = 10/67 (14%), Positives = 18/67 (26%), Gaps = 3/67 (4%)
Query: 1 MCLASEVPLIESGTAGYEGQVELIKKGETKCYECDPKPAAKTYPGCTIRNTPSEPIHCIV 60
+ S++PL+ T G G + +I K + P H
Sbjct: 144 VLWNSQIPLLICRTYGLVGYMRIIIKEHPVIESHPDNA---LEDLRLDKPFPELREHFQS 200
Query: 61 WAKHLFN 67
+
Sbjct: 201 YDLDHME 207
Score = 41.2 bits (96), Expect = 2e-04
Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Query: 230 RLTVARNSALNFNPDANIVAHHTSIISA-DFGVNYFKQFTLVMNALDNR 277
R A N D + S + D ++F +FT+V+
Sbjct: 87 RAEAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPE 135
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.0 bits (108), Expect = 1e-05
Identities = 48/375 (12%), Positives = 89/375 (23%), Gaps = 131/375 (34%)
Query: 2 CLASEVPLIESGTAGYEGQV------------ELIKKGETKCYECDPKPAAKTYPGCTIR 49
+A +V L + ++ +++ + Y+ DP +
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP-------NWTSRS 217
Query: 50 NTPSEPIHCIVWAK----HLFNLEGSAPGLLVLAQGQLFGEIDADEEVSPDTEDPEAVG- 104
+ S I + L + LLVL + ++ +A
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL-----------L-----NVQNAKAWNA 261
Query: 105 -DAGAK-----AAASEATANGDVVRTSTRAWASACGYDPRK---LFAKFFDADIRYL--- 152
+ K T + P + L K+ D + L
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321
Query: 153 --------ISM-----------SDLWKTRKAPQPLVWDTLSDAVAGSSKETDGGGLKDQR 193
+S+ D WK D L+ + S + + +
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNC------DKLTTIIESSLNVLEPAEYR-KM 374
Query: 194 VWSVAECARVFERSVRELKTKFDVSRPGL-----DKSFYGDRLTV---ARNSALNFNPD- 244
++ VF S + L D + V + S + P
Sbjct: 375 FDRLS----VFPPSA-------HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423
Query: 245 ----------------ANIVAHHTSIISADFGVNYFKQFTLVMNALDN------------ 276
N A H SI+ F L+ LD
Sbjct: 424 STISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKN 483
Query: 277 -----RVSKFSALLL 286
R++ F + L
Sbjct: 484 IEHPERMTLFRMVFL 498
Score = 36.4 bits (83), Expect = 0.011
Identities = 23/166 (13%), Positives = 49/166 (29%), Gaps = 46/166 (27%)
Query: 141 FAKFFDA-DI----RYLISMSDLWKTRKAPQP-----LVWDTLSDAVAGSSKETDGGGLK 190
F FD D+ + ++S ++ + ++ TL ++ L+
Sbjct: 29 FVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLR 88
Query: 191 DQRVWSVA----EC------ARVFERSVRELK------TKFDVSRPGLDKSFYGDRLTVA 234
+ ++ E R++ L K++VSR
Sbjct: 89 INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL--------QPYLKL 140
Query: 235 RNSALNFNPDANIVAHHTSIISADFGVNYF-KQFTLVMNAL-DNRV 278
R + L P N++ GV K + ++ +V
Sbjct: 141 RQALLELRPAKNVLID---------GVLGSGKT-WVALDVCLSYKV 176
>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold,
ATP-binding, UBL conjugation pathway, transfer
structural genomics consortium, SGC; HET: ATP; 2.00A
{Homo sapiens} PDB: 3guc_A*
Length = 292
Score = 37.3 bits (87), Expect = 0.004
Identities = 12/50 (24%), Positives = 17/50 (34%), Gaps = 5/50 (10%)
Query: 2 CLASEVPLIESG--TAGYEGQVELIKKGETKCYEC---DPKPAAKTYPGC 46
C +ESG G ++LI GE+ C+ C A
Sbjct: 158 CNELGQTWMESGVSENAVSGHIQLIIPGESACFACAPPLVVAANIDEKTL 207
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.037
Identities = 9/24 (37%), Positives = 11/24 (45%), Gaps = 4/24 (16%)
Query: 18 EGQVELIKKGET--KCYECDPKPA 39
E Q +KK + K Y D PA
Sbjct: 18 EKQA--LKKLQASLKLYADDSAPA 39
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein,
lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A
{Dictyostelium discoideum} PDB: 2uuv_A*
Length = 584
Score = 33.2 bits (76), Expect = 0.097
Identities = 4/27 (14%), Positives = 9/27 (33%), Gaps = 2/27 (7%)
Query: 115 ATANGDVVRTSTRAWASACGYDPRKLF 141
T G + + S G + + +
Sbjct: 270 VTPTGTLELRNGAR--SGAGINYKHII 294
>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL,
ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A*
3kyc_A* 3kyd_A*
Length = 346
Score = 31.3 bits (71), Expect = 0.37
Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 2/47 (4%)
Query: 230 RLTVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDN 276
R + A N NP ++ I ++F QF V +
Sbjct: 91 RAEASLERAQNLNPMVDVKVDTEDIEKKP--ESFFTQFDAVCLTCCS 135
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit;
flavoprotein, electron-transfer, FAD, oxidoreductase;
HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1
d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Length = 520
Score = 31.2 bits (71), Expect = 0.38
Identities = 8/26 (30%), Positives = 10/26 (38%)
Query: 116 TANGDVVRTSTRAWASACGYDPRKLF 141
ANGDV RT + + K
Sbjct: 188 LANGDVYRTGMGGVPGSNTWQIFKWG 213
>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein
structure, MCCC7, peptide antibiotics, N-P bond
formation, transferase; HET: ATP; 1.90A {Escherichia
coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A
Length = 353
Score = 30.8 bits (70), Expect = 0.42
Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 6/58 (10%)
Query: 2 CLASEVPLIESGTAGYEGQV-ELIKKGETKCYEC-----DPKPAAKTYPGCTIRNTPS 53
C+ + P I +G L G+T CYEC D + K I+ S
Sbjct: 230 CVRANQPYINAGYVNDIAVFGPLYVPGKTGCYECQKVVADLYGSEKENIDHKIKLINS 287
Score = 28.5 bits (64), Expect = 2.9
Identities = 5/47 (10%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 233 VARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRVS 279
V + L N + ++ + I+ ++ + + + + D+ +
Sbjct: 176 VIKRELLKRNSEISVSEIALN-INDYTDLHKVPEADIWVVSADHPFN 221
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus
thermophilus}
Length = 219
Score = 29.7 bits (67), Expect = 0.85
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 116 TANGDVVRTSTRAWASACGYDPRKLFA 142
T G VR + GYD +LF
Sbjct: 69 TPKGRRVRAGGVVVKNVQGYDLVRLFV 95
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 29.8 bits (67), Expect = 1.3
Identities = 27/182 (14%), Positives = 47/182 (25%), Gaps = 44/182 (24%)
Query: 88 DADEEVSPDTEDPEAVGDAG---AKAAASEATANGDVVRTSTRAWASACGYDPRKLFAKF 144
A + +D + G KA TS G P + ++
Sbjct: 1124 KARICIVGGYDDFQEEGSFEFGNMKA-------------TSNTLEEFEHGRTPAE-MSRP 1169
Query: 145 FDADIR----------YLISMS-DLWKTRKAPQPLVWDTLSDAVAGSSKETDGGGLKDQR 193
R I M DL P + VA ++ TD G
Sbjct: 1170 ATTT-RNGFMEAQGAGIQIIMQADLALKMGVP-------IYGIVAMAATATDKIGR---- 1217
Query: 194 VWSVAECARVFERSVRELKTKFDVSRPGLDKSFYGDRLTVARNSALNFNPD--ANIVAHH 251
SV + + RE + + P L+ + +L ++ + +
Sbjct: 1218 --SVPAPGKGILTTAREHHSSVKYASPNLNMKYRKRQLVTREAQIKDWVENELEALKLEA 1275
Query: 252 TS 253
Sbjct: 1276 EE 1277
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann
fold, (2) Cys-X-X-Cys zinc-binding M MOAD:
ubiquitin-like fold; 1.70A {Escherichia coli} SCOP:
c.111.1.1 PDB: 1jwa_B* 1jwb_B*
Length = 249
Score = 28.2 bits (64), Expect = 2.8
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 9/50 (18%)
Query: 2 CLASEVPLIESGTA-GYEGQVELIKKGETK-CYEC---DPKPAAKTYPGC 46
C A++VPL+ SG A EGQ+ + + + CY C A C
Sbjct: 142 CFAAKVPLV-SGAAIRMEGQITVFTYQDGEPCYRCLSRLFGENA---LTC 187
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein
complex, THIF, TRAN biosynthetic protein complex; 1.98A
{Escherichia coli} PDB: 1zfn_A* 1zkm_A
Length = 251
Score = 28.2 bits (64), Expect = 3.0
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 9/50 (18%)
Query: 2 CLASEVPLIESGTA-GYEGQVELIK-KGETKCYEC---DPKPAAKTYPGC 46
C+A PLI + +A G+ GQ+ ++ E CY C D + C
Sbjct: 139 CVALNTPLI-TASAVGFGGQLMVLTPPWEQGCYRCLWPDNQEPE---RNC 184
>1cby_A Delta-endotoxin CYTB; mosquitocidal, membrane pore, cytolytic;
2.60A {Bacillus thuringiensis serovar
kyushueorganism_taxid} SCOP: d.103.1.1
Length = 259
Score = 27.5 bits (60), Expect = 4.8
Identities = 14/48 (29%), Positives = 19/48 (39%)
Query: 204 FERSVRELKTKFDVSRPGLDKSFYGDRLTVARNSALNFNPDANIVAHH 251
F S E+K S P + K F LTV + NFN + +
Sbjct: 6 FSNSRMEVKGNNGCSAPIIRKPFKHIVLTVPSSDLDNFNTVFYVQPQY 53
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit,
somatic form; pyruvate_dehydrogenase_complex, human,
multienzyme_complex_component; HET: TPP; 1.90A {Homo
sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A
3exh_A* 3exg_A 3exf_A*
Length = 365
Score = 27.3 bits (61), Expect = 6.9
Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 7/47 (14%)
Query: 101 EAVGDAGAKAAASEATANGDVVRTSTR--AWASACGYDPRKLFAKFF 145
EA G +A + D + T+ R + G R++ A+
Sbjct: 73 EACC-VGLEAGINP----TDHLITAYRAHGFTFTRGLSVREILAELT 114
>3nkd_A Crispr-associated protein CAS1; crispr,CAS1,YGBT,nuclease, DNA
recombination, DNA repair, IM system; 1.95A {Escherichia
coli}
Length = 305
Score = 26.8 bits (59), Expect = 9.0
Identities = 9/35 (25%), Positives = 18/35 (51%)
Query: 77 VLAQGQLFGEIDADEEVSPDTEDPEAVGDAGAKAA 111
VLA G++ ++ P ++GDAG +++
Sbjct: 271 VLAAGEIQPPAPPEDAQPVAIPLPVSLGDAGHRSS 305
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.402
Gapped
Lambda K H
0.267 0.0723 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,424,742
Number of extensions: 263695
Number of successful extensions: 484
Number of sequences better than 10.0: 1
Number of HSP's gapped: 469
Number of HSP's successfully gapped: 37
Length of query: 288
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 195
Effective length of database: 4,105,140
Effective search space: 800502300
Effective search space used: 800502300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.7 bits)