RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9781
         (288 letters)



>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 426

 Score = 80.1 bits (197), Expect = 1e-17
 Identities = 34/104 (32%), Positives = 46/104 (44%), Gaps = 18/104 (17%)

Query: 2   CLASEVPLIESGTAGYEGQVELIKKGETKCYECDPK--PAAKTYPGCTIRNTPSEPIHCI 59
             +S VPLI+ GT G++G   +I  G T C EC  +  P    +P CTI + P  P HCI
Sbjct: 159 DPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCI 218

Query: 60  VWAKHLFNLEGSAPGLLVLAQGQLFGEIDADEEVSPDTEDPEAV 103
            + + L                Q   E    E V  D +DPE +
Sbjct: 219 EYVRML----------------QWPKEQPFGEGVPLDGDDPEHI 246


>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding
           protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 529

 Score = 45.7 bits (108), Expect = 4e-06
 Identities = 17/99 (17%), Positives = 30/99 (30%), Gaps = 6/99 (6%)

Query: 1   MCLASEVPLIESGTAGYEGQVELIKKGETKCYECDPKPAAKTYPGCTIRNTPSEPIHCIV 60
           +   S++PL+   T G  G + +I   E    E  P            +  P    H   
Sbjct: 137 VLWNSQIPLLICRTYGLVGYMRII-IKEHPVIESHPDN--ALEDLRLDKPFPELREHFQS 193

Query: 61  WA--KHLFNLEGSAPGLLVLAQGQLFGEIDADEEVSPDT 97
           +             P ++++A+  L           P T
Sbjct: 194 YDLDHMEKKDHSHTPWIVIIAKY-LAQWYSETNGRIPKT 231



 Score = 40.7 bits (95), Expect = 1e-04
 Identities = 9/57 (15%), Positives = 18/57 (31%), Gaps = 1/57 (1%)

Query: 233 VARNSALNFNPDANIVAHHTSIIS-ADFGVNYFKQFTLVMNALDNRVSKFSALLLCV 288
            A       N D +      S  +  D   ++F +FT+V+       +      +  
Sbjct: 83  AAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTSLRLADVLW 139


>d2fp1a1 a.130.1.4 (A:35-199) Secreted chorismate mutase
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 165

 Score = 26.4 bits (58), Expect = 3.4
 Identities = 12/57 (21%), Positives = 15/57 (26%), Gaps = 3/57 (5%)

Query: 122 VRTSTRAWASACGYDP---RKLFAKFFDADIRYLISMSDLWKTRKAPQPLVWDTLSD 175
                   A +   DP    ++F     A      S    WK   A  P     LS 
Sbjct: 42  QLAKLGEDARSQHIDPDYVTRVFDDQIRATEAIEYSRFSDWKLNPASAPPEPPDLSA 98


>d1uoka2 c.1.8.1 (A:1-479) Oligo-1,6, glucosidase {Bacillus cereus
           [TaxId: 1396]}
          Length = 479

 Score = 26.5 bits (57), Expect = 3.9
 Identities = 10/43 (23%), Positives = 16/43 (37%)

Query: 62  AKHLFNLEGSAPGLLVLAQGQLFGEIDADEEVSPDTEDPEAVG 104
           AK L  +     G   + QG+  G  +   E   +  D E + 
Sbjct: 348 AKMLATVLHMMKGTPYIYQGEEIGMTNVRFESIDEYRDIETLN 390


>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol
           methylhydroxylase {Pseudomonas putida [TaxId: 303]}
          Length = 236

 Score = 26.2 bits (56), Expect = 4.6
 Identities = 8/27 (29%), Positives = 10/27 (37%)

Query: 116 TANGDVVRTSTRAWASACGYDPRKLFA 142
            ANGDV RT       +  +   K   
Sbjct: 183 LANGDVYRTGMGGVPGSNTWQIFKWGY 209


>d1xhba2 c.68.1.17 (A:95-422) Polypeptide
           N-acetylgalactosaminyltransferase 1, N-terminal domain
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 328

 Score = 26.1 bits (56), Expect = 5.3
 Identities = 19/113 (16%), Positives = 30/113 (26%), Gaps = 8/113 (7%)

Query: 117 ANGDVVRTSTRAWASACGYDPRKLFAKFFDADIRYLISMSDLWKTRKAPQPLVWDTLSDA 176
             G +       +     YD         + +I + I               V      A
Sbjct: 197 MAGGLFSIDRDYFQEIGTYDAGMDIWGGENLEISFRIWQCG-GTLEIVTCSHVGHVFRKA 255

Query: 177 VAGSSKETDGGGLKDQRVWSVAECARVFERSVRELKTKFDVSRPGLDKSFYGD 229
              +     G  +            R+ E  + E K  F +  PG+ K  YGD
Sbjct: 256 TPYTFPGGTGQIINKNNR-------RLAEVWMDEFKNFFYIISPGVTKVDYGD 301


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.133    0.402 

Gapped
Lambda     K      H
   0.267   0.0652    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,050,483
Number of extensions: 47354
Number of successful extensions: 91
Number of sequences better than 10.0: 1
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 8
Length of query: 288
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 204
Effective length of database: 1,254,276
Effective search space: 255872304
Effective search space used: 255872304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.0 bits)