BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9783
(726 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KYC|B Chain B, Human Sumo E1 Complex With A Sumo1-Amp Mimic
Length = 660
Score = 268 bits (686), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 142/273 (52%), Positives = 165/273 (60%), Gaps = 85/273 (31%)
Query: 11 KDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHV 70
++L + + +VLVVGAGGIGCELLKNLVL+GFS+I+++DLDTIDVSNLN
Sbjct: 29 RELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLN---------- 78
Query: 71 GKSKAQVARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDAN 130
RQFLF K+HVG+SKAQVA+ S L F P AN
Sbjct: 79 ------------------------------RQFLFQKKHVGRSKAQVAKESVLQFYPKAN 108
Query: 131 IVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGV 190
IVA+H SI+ NPD N V
Sbjct: 109 IVAYHDSIM-------------------------------NPDYN--------------V 123
Query: 191 NYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKKGETKCYECDP 250
+F+QF LVMNALDNRAARNHVNRMCLA++VPLIESGTAGY GQV IKKG T+CYEC P
Sbjct: 124 EFFRQFILVMNALDNRAARNHVNRMCLAADVPLIESGTAGYLGQVTTIKKGVTECYECHP 183
Query: 251 KPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNYL 283
KP +T+PGCTIRNTPSEPIHCIVWAK+LFN L
Sbjct: 184 KPTQRTFPGCTIRNTPSEPIHCIVWAKYLFNQL 216
Score = 241 bits (615), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 129/296 (43%), Positives = 175/296 (59%), Gaps = 15/296 (5%)
Query: 357 NGDVVRTSTRAWASACGYDPRKLFAKFFDADIRYLISMSDLWKTRKAPQPLVWDTLSDAV 416
+GD+ R ST+ WA + GYDP KLF K F DIRYL++M LW+ RK P PL W V
Sbjct: 252 DGDIKRISTKEWAKSTGYDPVKLFTKLFKDDIRYLLTMDKLWRKRKPPVPLDWAE----V 307
Query: 417 AGSSKETDGG--------GLKDQRVWSVAECARVFERSVRELKTKFDAAVEKDEHLVWDK 468
+ET+ GLKDQ+V V AR+F +S+ L+ A L+WDK
Sbjct: 308 QSQGEETNASDQQNEPQLGLKDQQVLDVKSYARLFSKSIETLRVHL-AEKGDGAELIWDK 366
Query: 469 DDKPAMDFVAACANIRAHVFSIPEKSRFDIKSMAGNIIPAIATSNAIVAGLVVLHAIHVL 528
DD AMDFV + AN+R H+FS+ KSRFDIKSMAGNIIPAIAT+NA++AGL+VL + +L
Sbjct: 367 DDPSAMDFVTSAANLRMHIFSMNMKSRFDIKSMAGNIIPAIATTNAVIAGLIVLEGLKIL 426
Query: 529 QARFSSCQTVYLRKKPNHRDQMIVPEKYLTAPNPTCPVCSPKPQRTIGLDVTKMTVAEFE 588
+ C+T++L K+PN R +++VP L PNP C VC+ KP+ T+ L+V K+TV +
Sbjct: 427 SGKIDQCRTIFLNKQPNPRKKLLVP-CALDPPNPNCYVCASKPEVTVRLNVHKVTVLTLQ 485
Query: 589 EAVLKKTLNMSAMVDVMXXXXXXXXXXXXXXXTEANNDKPL-EHGLIISHRVSARD 643
+ ++K+ M A + TEANN K L E G+ R+ A D
Sbjct: 486 DKIVKEKFAMVAPDVQIEDGKGTILISSEEGETEANNHKKLSEFGIRNGSRLQADD 541
>pdb|3KYD|B Chain B, Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mimic
Length = 551
Score = 267 bits (682), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 142/273 (52%), Positives = 165/273 (60%), Gaps = 85/273 (31%)
Query: 11 KDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHV 70
++L + + +VLVVGAGGIGCELLKNLVL+GFS+I+++DLDTIDVSNLN
Sbjct: 11 RELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLN---------- 60
Query: 71 GKSKAQVARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDAN 130
RQFLF K+HVG+SKAQVA+ S L F P AN
Sbjct: 61 ------------------------------RQFLFQKKHVGRSKAQVAKESVLQFYPKAN 90
Query: 131 IVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGV 190
IVA+H SI+ NPD N V
Sbjct: 91 IVAYHDSIM-------------------------------NPDYN--------------V 105
Query: 191 NYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKKGETKCYECDP 250
+F+QF LVMNALDNRAARNHVNRMCLA++VPLIESGTAGY GQV IKKG T+CYEC P
Sbjct: 106 EFFRQFILVMNALDNRAARNHVNRMCLAADVPLIESGTAGYLGQVTTIKKGVTECYECHP 165
Query: 251 KPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNYL 283
KP +T+PGCTIRNTPSEPIHCIVWAK+LFN L
Sbjct: 166 KPTQRTFPGCTIRNTPSEPIHCIVWAKYLFNQL 198
Score = 240 bits (613), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 129/296 (43%), Positives = 176/296 (59%), Gaps = 15/296 (5%)
Query: 357 NGDVVRTSTRAWASACGYDPRKLFAKFFDADIRYLISMSDLWKTRKAPQPLVWDTLSDAV 416
+GD+ R ST+ WA + GYDP KLF K F DIRYL++M LW+ RK P PL W V
Sbjct: 234 DGDIKRISTKEWAKSTGYDPVKLFTKLFKDDIRYLLTMDKLWRKRKPPVPLDWAE----V 289
Query: 417 AGSSKETDGG--------GLKDQRVWSVAECARVFERSVRELKTKFDAAVEKDEHLVWDK 468
+ET+ GLKDQ+V V AR+F +S+ L+ + E L+WDK
Sbjct: 290 QSQGEETNASDQQNEPQLGLKDQQVLDVKSYARLFSKSIETLRVHLAEKGDGAE-LIWDK 348
Query: 469 DDKPAMDFVAACANIRAHVFSIPEKSRFDIKSMAGNIIPAIATSNAIVAGLVVLHAIHVL 528
DD AMDFV + AN+R H+FS+ KSRFDIKSMAGNIIPAIAT+NA++AGL+VL + +L
Sbjct: 349 DDPSAMDFVTSAANLRMHIFSMNMKSRFDIKSMAGNIIPAIATTNAVIAGLIVLEGLKIL 408
Query: 529 QARFSSCQTVYLRKKPNHRDQMIVPEKYLTAPNPTCPVCSPKPQRTIGLDVTKMTVAEFE 588
+ C+T++L K+PN R +++VP L PNP C VC+ KP+ T+ L+V K+TV +
Sbjct: 409 SGKIDQCRTIFLNKQPNPRKKLLVP-CALDPPNPNCYVCASKPEVTVRLNVHKVTVLTLQ 467
Query: 589 EAVLKKTLNMSAMVDVMXXXXXXXXXXXXXXXTEANNDKPL-EHGLIISHRVSARD 643
+ ++K+ M A + TEANN K L E G+ R+ A D
Sbjct: 468 DKIVKEKFAMVAPDVQIEDGKGTILISSEEGETEANNHKKLSEFGIRNGSRLQADD 523
>pdb|1Y8Q|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8Q|D Chain D, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8R|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|1Y8R|E Chain E, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
Length = 640
Score = 265 bits (678), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 141/273 (51%), Positives = 164/273 (60%), Gaps = 85/273 (31%)
Query: 11 KDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHV 70
++L + + +VLVVGAGGIGCELLKNLVL+GFS+I+++DLDTIDVSNLN
Sbjct: 9 RELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLN---------- 58
Query: 71 GKSKAQVARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDAN 130
RQFLF K+HVG+SKAQVA+ S L F P AN
Sbjct: 59 ------------------------------RQFLFQKKHVGRSKAQVAKESVLQFYPKAN 88
Query: 131 IVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGV 190
IVA+H SI+ NPD N V
Sbjct: 89 IVAYHDSIM-------------------------------NPDYN--------------V 103
Query: 191 NYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKKGETKCYECDP 250
+F+QF LVMNALDNRAARNHVNRMCLA++VPLIESGTAGY GQV IKKG T+CYEC P
Sbjct: 104 EFFRQFILVMNALDNRAARNHVNRMCLAADVPLIESGTAGYLGQVTTIKKGVTECYECHP 163
Query: 251 KPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNYL 283
KP +T+PG TIRNTPSEPIHCIVWAK+LFN L
Sbjct: 164 KPTQRTFPGATIRNTPSEPIHCIVWAKYLFNQL 196
Score = 241 bits (615), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 129/296 (43%), Positives = 175/296 (59%), Gaps = 15/296 (5%)
Query: 357 NGDVVRTSTRAWASACGYDPRKLFAKFFDADIRYLISMSDLWKTRKAPQPLVWDTLSDAV 416
+GD+ R ST+ WA + GYDP KLF K F DIRYL++M LW+ RK P PL W V
Sbjct: 232 DGDIKRISTKEWAKSTGYDPVKLFTKLFKDDIRYLLTMDKLWRKRKPPVPLDWAE----V 287
Query: 417 AGSSKETDGG--------GLKDQRVWSVAECARVFERSVRELKTKFDAAVEKDEHLVWDK 468
+ET+ GLKDQ+V V AR+F +S+ L+ A L+WDK
Sbjct: 288 QSQGEETNASDQQNEPQLGLKDQQVLDVKSYARLFSKSIETLRVHL-AEKGDGAELIWDK 346
Query: 469 DDKPAMDFVAACANIRAHVFSIPEKSRFDIKSMAGNIIPAIATSNAIVAGLVVLHAIHVL 528
DD AMDFV + AN+R H+FS+ KSRFDIKSMAGNIIPAIAT+NA++AGL+VL + +L
Sbjct: 347 DDPSAMDFVTSAANLRMHIFSMNMKSRFDIKSMAGNIIPAIATTNAVIAGLIVLEGLKIL 406
Query: 529 QARFSSCQTVYLRKKPNHRDQMIVPEKYLTAPNPTCPVCSPKPQRTIGLDVTKMTVAEFE 588
+ C+T++L K+PN R +++VP L PNP C VC+ KP+ T+ L+V K+TV +
Sbjct: 407 SGKIDQCRTIFLNKQPNPRKKLLVP-CALDPPNPNCYVCASKPEVTVRLNVHKVTVLTLQ 465
Query: 589 EAVLKKTLNMSAMVDVMXXXXXXXXXXXXXXXTEANNDKPL-EHGLIISHRVSARD 643
+ ++K+ M A + TEANN K L E G+ R+ A D
Sbjct: 466 DKIVKEKFAMVAPDVQIEDGKGTILISSEEGETEANNHKKLSEFGIRNGSRLQADD 521
>pdb|2PX9|A Chain A, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
Length = 217
Score = 142 bits (358), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 75/156 (48%), Positives = 94/156 (60%), Gaps = 13/156 (8%)
Query: 357 NGDVVRTSTRAWASACGYDPRKLFAKFFDADIRYLISMSDLWKTRKAPQPLVWDTLSDAV 416
+GD+ R ST+ WA + GYDP KLF K F DIRYL++M LW+ RK P PL W V
Sbjct: 67 DGDIKRISTKEWAKSTGYDPVKLFTKLFKDDIRYLLTMDKLWRKRKPPVPLDW----AEV 122
Query: 417 AGSSKETDGG--------GLKDQRVWSVAECARVFERSVRELKTKFDAAVEKDEHLVWDK 468
+ET+ GLKDQ+V V AR+F +S+ L+ A L+WDK
Sbjct: 123 QSQGEETNASDQQNEPQLGLKDQQVLDVKSYARLFSKSIETLRVHL-AEKGDGAELIWDK 181
Query: 469 DDKPAMDFVAACANIRAHVFSIPEKSRFDIKSMAGN 504
DD AMDFV + AN+R H+FS+ KSRFDIKSMAGN
Sbjct: 182 DDPSAMDFVTSAANLRMHIFSMNMKSRFDIKSMAGN 217
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 25/29 (86%), Positives = 28/29 (96%)
Query: 255 KTYPGCTIRNTPSEPIHCIVWAKHLFNYL 283
+T+PGCTIRNTPSEPIHCIVWAK+LFN L
Sbjct: 3 RTFPGCTIRNTPSEPIHCIVWAKYLFNQL 31
>pdb|4II2|A Chain A, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
pdb|4II3|A Chain A, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme
1 (uba1) In Complex With Ubiquitin And Atp/mg
pdb|4II3|C Chain C, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme
1 (uba1) In Complex With Ubiquitin And Atp/mg
Length = 1001
Score = 140 bits (354), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 143/584 (24%), Positives = 223/584 (38%), Gaps = 180/584 (30%)
Query: 7 GVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFS-----NIEIVDLDTIDVSNLNR 61
VF + ++ I +VGAG IGCE+LKN + G + +I + D+D+I+ SNLN
Sbjct: 404 AVFGSEFQEKIASLSTFLVGAGAIGCEMLKNWAMMGVATGESGHISVTDMDSIEKSNLN- 462
Query: 62 QFLFHKQHVGKSKAQVARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNS 121
RQFLF + VGK K++ A +
Sbjct: 463 ---------------------------------------RQFLFRPRDVGKLKSECASTA 483
Query: 122 ALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHT 181
NP L + +++ VG +
Sbjct: 484 VSIMNP---------------SLTGKITSYQERVGPESEGI------------------- 509
Query: 182 SIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKKG 241
FG +F++ +LV NALDN AR +V+R C+ E PL+ESGT G +G +++
Sbjct: 510 ------FGDEFFEKLSLVTNALDNVEARMYVDRRCVFFEKPLLESGTLGTKGNTQVVVPH 563
Query: 242 ETKCYECDPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNYLERLMLMKRCPLILKIQKL 301
T+ Y P K++P CT++N P+ H I WA+ LF L + I +
Sbjct: 564 LTESYGSSQDPPEKSFPICTLKNFPNRIEHTIAWARDLFEGLFK----------QPIDNV 613
Query: 302 LERLSAMNVIRSQLPKLIQAVQLGILRLNPFTVLSGLNICXXXXXXXXXXXXXXXNGDVV 361
LS+ N + + L NP VL + D +
Sbjct: 614 NMYLSSPNFLETSLKT----------SSNPREVLENIR-------------------DYL 644
Query: 362 RTSTRAWASACGYDPRKLFAKFFDADIRYLI----------SMSDLWK-TRKAPQPLVWD 410
T C R F KFF+ +I+ L+ + W ++AP PL +D
Sbjct: 645 VTEKPLSFEECIMWARLQFDKFFNNNIQQLLFNFPKDSVTSTGQPFWSGPKRAPTPLSFD 704
Query: 411 T-----LSDAVAGSSKETDGGGLKDQRVWSVAECARVF--------------ERSVRELK 451
VA +S GLK + ++ E RV + V E +
Sbjct: 705 IHNREHFDFIVAAASLYAFNYGLKSETDPAIYE--RVLAGYNPPPFAPKSGIKIQVNENE 762
Query: 452 TKFDAAVEKDEHLV----------------------WDKDDKPA--MDFVAACANIRAHV 487
+ A KD+ + ++KDD +DF+ A +N+RA
Sbjct: 763 EAPETAANKDKQELKSIADSLPPPSSLVGFRLTPAEFEKDDDSNHHIDFITAASNLRAMN 822
Query: 488 FSIPEKSRFDIKSMAGNIIPAIATSNAIVAGLVVLHAIHVLQAR 531
+ I RF K +AG I+PA+ TS A+V+GLV L + ++ +
Sbjct: 823 YDITPADRFKTKFVAGKIVPAMCTSTAVVSGLVCLELVKLVDGK 866
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 38/70 (54%)
Query: 17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQ 76
+ +S VL++G G+G E+ KN+ L+G ++ + D + +L+ Q+ + +G +A+
Sbjct: 24 MSQSNVLIIGCKGLGVEIAKNVCLAGVKSVTLYDPQPTRIEDLSSQYFLTEDDIGVPRAK 83
Query: 77 VARNSALNFN 86
V + N
Sbjct: 84 VTVSKLAELN 93
>pdb|2NVU|B Chain B, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 805
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 98/334 (29%), Positives = 136/334 (40%), Gaps = 111/334 (33%)
Query: 11 KDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHV 70
+ L+ L+ KVLV+GAGG+GCELLKNL LSGF I ++D+DTIDVSNLN
Sbjct: 403 ESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLN---------- 452
Query: 71 GKSKAQVARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDAN 130
RQFLF + +G+ KA+VA + P+ N
Sbjct: 453 ------------------------------RQFLFRPKDIGRPKAEVAAEFLNDRVPNCN 482
Query: 131 IVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGV 190
+V H I DF
Sbjct: 483 VVPHFNKI-----------------------------------------------QDFND 495
Query: 191 NYFKQFTLVMNALDNRAARNHVNRMCL------------ASEVPLIESGTAGYEGQVELI 238
+++QF +++ LD+ AR +N M + +S VPLI+ GT G++G +I
Sbjct: 496 TFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVI 555
Query: 239 KKGETKCYEC--DPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNYLERLMLMKRCPL-- 294
G T C EC + P +P CTI + P P HCI + + L + + + PL
Sbjct: 556 LPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRML-QWPKEQPFGEGVPLDG 614
Query: 295 ------ILKIQKLLERLSAMNVIRSQLPKLIQAV 322
QK LER S N IR +L Q V
Sbjct: 615 DDPEHIQWIFQKSLERASQYN-IRGVTYRLTQGV 647
>pdb|1YOV|B Chain B, Insights Into The Ubiquitin Transfer Cascade From The
Refined Structure Of The Activating Enzyme For Nedd8
pdb|1YOV|D Chain D, Insights Into The Ubiquitin Transfer Cascade From The
Refined Structure Of The Activating Enzyme For Nedd8
Length = 444
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 98/334 (29%), Positives = 136/334 (40%), Gaps = 111/334 (33%)
Query: 11 KDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHV 70
+ L+ L+ KVLV+GAGG+GCELLKNL LSGF I ++D+DTIDVSNLN
Sbjct: 42 ESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLN---------- 91
Query: 71 GKSKAQVARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDAN 130
RQFLF + +G+ KA+VA + P+ N
Sbjct: 92 ------------------------------RQFLFRPKDIGRPKAEVAAEFLNDRVPNCN 121
Query: 131 IVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGV 190
+V H I DF
Sbjct: 122 VVPHFNKI-----------------------------------------------QDFND 134
Query: 191 NYFKQFTLVMNALDNRAARNHVNRMCL------------ASEVPLIESGTAGYEGQVELI 238
+++QF +++ LD+ AR +N M + +S VPLI+ GT G++G +I
Sbjct: 135 TFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVI 194
Query: 239 KKGETKCYEC--DPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNYLERLMLMKRCPL-- 294
G T C EC + P +P CTI + P P HCI + + L + + + PL
Sbjct: 195 LPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRML-QWPKEQPFGEGVPLDG 253
Query: 295 ------ILKIQKLLERLSAMNVIRSQLPKLIQAV 322
QK LER S N IR +L Q V
Sbjct: 254 DDPEHIQWIFQKSLERASQYN-IRGVTYRLTQGV 286
>pdb|3GZN|B Chain B, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
pdb|3GZN|D Chain D, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
Length = 463
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 98/334 (29%), Positives = 136/334 (40%), Gaps = 111/334 (33%)
Query: 11 KDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHV 70
+ L+ L+ KVLV+GAGG+GCELLKNL LSGF I ++D+DTIDVSNLN
Sbjct: 61 ESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLN---------- 110
Query: 71 GKSKAQVARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDAN 130
RQFLF + +G+ KA+VA + P+ N
Sbjct: 111 ------------------------------RQFLFRPKDIGRPKAEVAAEFLNDRVPNCN 140
Query: 131 IVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGV 190
+V H I DF
Sbjct: 141 VVPHFNKI-----------------------------------------------QDFND 153
Query: 191 NYFKQFTLVMNALDNRAARNHVNRMCL------------ASEVPLIESGTAGYEGQVELI 238
+++QF +++ LD+ AR +N M + +S VPLI+ GT G++G +I
Sbjct: 154 TFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVI 213
Query: 239 KKGETKCYEC--DPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNYLERLMLMKRCPL-- 294
G T C EC + P +P CTI + P P HCI + + L + + + PL
Sbjct: 214 LPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRML-QWPKEQPFGEGVPLDG 272
Query: 295 ------ILKIQKLLERLSAMNVIRSQLPKLIQAV 322
QK LER S N IR +L Q V
Sbjct: 273 DDPEHIQWIFQKSLERASQYN-IRGVTYRLTQGV 305
>pdb|1TT5|B Chain B, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
pdb|1TT5|D Chain D, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
Length = 434
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 98/334 (29%), Positives = 136/334 (40%), Gaps = 111/334 (33%)
Query: 11 KDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHV 70
+ L+ L+ KVLV+GAGG+GCELLKNL LSGF I ++D+DTIDVSNLN
Sbjct: 32 ESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLN---------- 81
Query: 71 GKSKAQVARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDAN 130
RQFLF + +G+ KA+VA + P+ N
Sbjct: 82 ------------------------------RQFLFRPKDIGRPKAEVAAEFLNDRVPNCN 111
Query: 131 IVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGV 190
+V H I DF
Sbjct: 112 VVPHFNKI-----------------------------------------------QDFND 124
Query: 191 NYFKQFTLVMNALDNRAARNHVNRMCL------------ASEVPLIESGTAGYEGQVELI 238
+++QF +++ LD+ AR +N M + +S VPLI+ GT G++G +I
Sbjct: 125 TFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVI 184
Query: 239 KKGETKCYEC--DPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNYLERLMLMKRCPL-- 294
G T C EC + P +P CTI + P P HCI + + L + + + PL
Sbjct: 185 LPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRML-QWPKEQPFGEGVPLDG 243
Query: 295 ------ILKIQKLLERLSAMNVIRSQLPKLIQAV 322
QK LER S N IR +L Q V
Sbjct: 244 DDPEHIQWIFQKSLERASQYN-IRGVTYRLTQGV 276
>pdb|3DBR|B Chain B, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|D Chain D, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|F Chain F, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|H Chain H, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
Length = 434
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 97/334 (29%), Positives = 136/334 (40%), Gaps = 111/334 (33%)
Query: 11 KDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHV 70
+ L+ L+ KVLV+GAGG+GCELLKNL LSGF I ++D+DTIDVSNLN
Sbjct: 32 ESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLN---------- 81
Query: 71 GKSKAQVARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDAN 130
RQFLF + +G+ KA+VA + P+ N
Sbjct: 82 ------------------------------RQFLFRPKDIGRPKAEVAAEFLNDRVPNCN 111
Query: 131 IVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGV 190
+V H I DF
Sbjct: 112 VVPHFNKI-----------------------------------------------QDFND 124
Query: 191 NYFKQFTLVMNALDNRAARNHVNRMCL------------ASEVPLIESGTAGYEGQVELI 238
+++QF +++ LD+ AR +N M + +S VPLI+ GT G++G ++I
Sbjct: 125 TFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNAQVI 184
Query: 239 KKGETKCYEC--DPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNYLERLMLMKRCPL-- 294
G T C EC + P +P TI + P P HCI + + L + + + PL
Sbjct: 185 LPGMTACIECTLELYPPQVNFPMATIASMPRLPEHCIEYVRML-QWPKEQPFGEGVPLDG 243
Query: 295 ------ILKIQKLLERLSAMNVIRSQLPKLIQAV 322
QK LER S N IR +L Q V
Sbjct: 244 DDPEHIQWIFQKSLERASQYN-IRGVTYRLTQGV 276
>pdb|1R4M|B Chain B, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|D Chain D, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|F Chain F, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|H Chain H, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4N|B Chain B, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|D Chain D, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|F Chain F, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|H Chain H, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
Length = 431
Score = 120 bits (301), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 97/334 (29%), Positives = 135/334 (40%), Gaps = 111/334 (33%)
Query: 11 KDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHV 70
+ L+ L+ KVLV+GAGG+GCELLKNL LSGF I ++D+DTIDVSNLN
Sbjct: 29 ESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLN---------- 78
Query: 71 GKSKAQVARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDAN 130
RQFLF + +G+ KA+VA + P+ N
Sbjct: 79 ------------------------------RQFLFRPKDIGRPKAEVAAEFLNDRVPNCN 108
Query: 131 IVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGV 190
+V H I DF
Sbjct: 109 VVPHFNKI-----------------------------------------------QDFND 121
Query: 191 NYFKQFTLVMNALDNRAARNHVNRMCL------------ASEVPLIESGTAGYEGQVELI 238
+++QF +++ LD+ AR +N M + +S VPLI+ GT G++G +I
Sbjct: 122 TFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVI 181
Query: 239 KKGETKCYEC--DPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNYLERLMLMKRCPL-- 294
G T C EC + P +P TI + P P HCI + + L + + + PL
Sbjct: 182 LPGMTACIECTLELYPPQVNFPMATIASMPRLPEHCIEYVRML-QWPKEQPFGEGVPLDG 240
Query: 295 ------ILKIQKLLERLSAMNVIRSQLPKLIQAV 322
QK LER S N IR +L Q V
Sbjct: 241 DDPEHIQWIFQKSLERASQYN-IRGVTYRLTQGV 273
>pdb|3DBL|B Chain B, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|D Chain D, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|F Chain F, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|H Chain H, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
Length = 434
Score = 120 bits (301), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 97/334 (29%), Positives = 135/334 (40%), Gaps = 111/334 (33%)
Query: 11 KDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHV 70
+ L+ L+ KVLV+GAGG+GCELLKNL LSGF I ++D+DTIDVSNLN
Sbjct: 32 ESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLN---------- 81
Query: 71 GKSKAQVARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDAN 130
RQFLF + +G+ KA+VA + P+ N
Sbjct: 82 ------------------------------RQFLFRPKDIGRPKAEVAAEFLNDRVPNCN 111
Query: 131 IVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGV 190
+V H I DF
Sbjct: 112 VVPHFNKI-----------------------------------------------QDFND 124
Query: 191 NYFKQFTLVMNALDNRAARNHVNRMCL------------ASEVPLIESGTAGYEGQVELI 238
+++QF +++ LD+ AR +N M + +S VPLI+ GT G++G +I
Sbjct: 125 TFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVI 184
Query: 239 KKGETKCYEC--DPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNYLERLMLMKRCPL-- 294
G T C EC + P +P TI + P P HCI + + L + + + PL
Sbjct: 185 LPGMTACIECTLELYPPQVNFPMATIASMPRLPEHCIEYVRML-QWPKEQPFGEGVPLDG 243
Query: 295 ------ILKIQKLLERLSAMNVIRSQLPKLIQAV 322
QK LER S N IR +L Q V
Sbjct: 244 DDPEHIQWIFQKSLERASQYN-IRGVTYRLTQGV 276
>pdb|3DBH|B Chain B, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|D Chain D, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|F Chain F, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|H Chain H, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
Length = 434
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 97/334 (29%), Positives = 135/334 (40%), Gaps = 111/334 (33%)
Query: 11 KDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHV 70
+ L+ L+ KVLV+GAGG+GCELLKNL LSGF I ++D+DTIDVSNLN
Sbjct: 32 ESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLN---------- 81
Query: 71 GKSKAQVARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDAN 130
RQFLF + +G+ KA+VA + P+ N
Sbjct: 82 ------------------------------RQFLFRPKDIGRPKAEVAAEFLNDRVPNCN 111
Query: 131 IVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGV 190
+V H I DF
Sbjct: 112 VVPHFNKI-----------------------------------------------QDFND 124
Query: 191 NYFKQFTLVMNALDNRAARNHVNRMCL------------ASEVPLIESGTAGYEGQVELI 238
+++QF +++ LD+ AR +N M + +S VPLI+ GT G++G +I
Sbjct: 125 TFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNAAVI 184
Query: 239 KKGETKCYEC--DPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNYLERLMLMKRCPL-- 294
G T C EC + P +P TI + P P HCI + + L + + + PL
Sbjct: 185 LPGMTACIECTLELYPPQVNFPMATIASMPRLPEHCIEYVRML-QWPKEQPFGEGVPLDG 243
Query: 295 ------ILKIQKLLERLSAMNVIRSQLPKLIQAV 322
QK LER S N IR +L Q V
Sbjct: 244 DDPEHIQWIFQKSLERASQYN-IRGVTYRLTQGV 276
>pdb|3CMM|A Chain A, Crystal Structure Of The Uba1-Ubiquitin Complex
pdb|3CMM|C Chain C, Crystal Structure Of The Uba1-Ubiquitin Complex
Length = 1015
Score = 112 bits (280), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 84/278 (30%), Positives = 117/278 (42%), Gaps = 85/278 (30%)
Query: 8 VFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSN-----IEIVDLDTIDVSNLNRQ 62
VF D + I SKV +VG+G IGCE+LKN L G + I + D D+I+ SNLN
Sbjct: 414 VFGLDFQKKIANSKVFLVGSGAIGCEMLKNWALLGLGSGSDGYIVVTDNDSIEKSNLN-- 471
Query: 63 FLFHKQHVGKSKAQVARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSA 122
RQFLF + VGK+K++VA +
Sbjct: 472 --------------------------------------RQFLFRPKDVGKNKSEVAAEAV 493
Query: 123 LNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTS 182
NPD GK A++ + V T
Sbjct: 494 CAMNPDLK-------------------------GKINAKIDK------------VGPETE 516
Query: 183 IISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKKGE 242
I F ++++ V NALDN AR +V+R C+ PL+ESGT G +G ++I
Sbjct: 517 EI---FNDSFWESLDFVTNALDNVDARTYVDRRCVFYRKPLLESGTLGTKGNTQVIIPRL 573
Query: 243 TKCYECDPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLF 280
T+ Y P K+ P CT+R+ P++ H I WAK LF
Sbjct: 574 TESYSSSRDPPEKSIPLCTLRSFPNKIDHTIAWAKSLF 611
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%)
Query: 467 DKDDKPAMDFVAACANIRAHVFSIPEKSRFDIKSMAGNIIPAIATSNAIVAGLVVLHAIH 526
D D ++F+ AC+N RA + I R K +AG IIPAIAT+ ++V GLV L
Sbjct: 815 DDDTNHHIEFITACSNCRAQNYFIETADRQKTKFIAGRIIPAIATTTSLVTGLVNLELYK 874
Query: 527 VLQAR 531
++ +
Sbjct: 875 LIDNK 879
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 41/63 (65%)
Query: 17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQ 76
++ S VL++G G+G E+ KN+VL+G ++ + D + + +++L+ QF ++ +G+ +
Sbjct: 25 MQTSNVLILGLKGLGVEIAKNVVLAGVKSMTVFDPEPVQLADLSTQFFLTEKDIGQKRGD 84
Query: 77 VAR 79
V R
Sbjct: 85 VTR 87
>pdb|1JWB|B Chain B, Structure Of The Covalent Acyl-Adenylate Form Of The
Moeb-Moad Protein Complex
pdb|1JWA|B Chain B, Structure Of The Atp-Bound Moeb-Moad Protein Complex
pdb|1JW9|B Chain B, Structure Of The Native Moeb-Moad Protein Complex
Length = 249
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 49/79 (62%)
Query: 9 FEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQ 68
F+ D ++ +K S+VL+VG GG+GC + L +G N+ ++D DT+ +SNL RQ L
Sbjct: 21 FDFDGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDA 80
Query: 69 HVGKSKAQVARNSALNFNP 87
VG+ K + AR++ NP
Sbjct: 81 TVGQPKVESARDALTRINP 99
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 4/108 (3%)
Query: 143 HLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNA 202
+L RQ L VG+ K + AR++ NP I + + A+ + LV++
Sbjct: 70 NLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNALLDDAELAA-LIAEHDLVLDC 128
Query: 203 LDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELI--KKGETKCYEC 248
DN A RN +N C A++VPL+ EGQ+ + + GE CY C
Sbjct: 129 TDNVAVRNQLNAGCFAAKVPLVSGAAIRMEGQITVFTYQDGE-PCYRC 175
>pdb|1ZUD|1 Chain 1, Structure Of This-Thif Protein Complex
pdb|1ZUD|3 Chain 3, Structure Of This-Thif Protein Complex
Length = 251
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 2/111 (1%)
Query: 139 IRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTL 198
+ +L RQ LF + + + K+QV++ NPD + A + + + +
Sbjct: 63 VHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQRLTGEALK-DAVARADV 121
Query: 199 VMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVE-LIKKGETKCYEC 248
V++ DN A R +N C+A PLI + G+ GQ+ L E CY C
Sbjct: 122 VLDCTDNMATRQEINAACVALNTPLITASAVGFGGQLMVLTPPWEQGCYRC 172
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%)
Query: 20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVAR 79
S+VL++G GG+G L +G + + D D + +SNL RQ LF + + + K+QV++
Sbjct: 29 SQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQ 88
Query: 80 NSALNFNPDANI 91
NPD +
Sbjct: 89 QRLTQLNPDIQL 100
>pdb|1ZFN|A Chain A, Structural Analysis Of Escherichia Coli Thif
pdb|1ZFN|B Chain B, Structural Analysis Of Escherichia Coli Thif
pdb|1ZFN|C Chain C, Structural Analysis Of Escherichia Coli Thif
pdb|1ZFN|D Chain D, Structural Analysis Of Escherichia Coli Thif
pdb|1ZKM|A Chain A, Structural Analysis Of Escherichia Coli Thif
pdb|1ZKM|B Chain B, Structural Analysis Of Escherichia Coli Thif
pdb|1ZKM|C Chain C, Structural Analysis Of Escherichia Coli Thif
pdb|1ZKM|D Chain D, Structural Analysis Of Escherichia Coli Thif
Length = 253
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 2/111 (1%)
Query: 139 IRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTL 198
+ +L RQ LF + + + K+QV++ NPD + A + + + +
Sbjct: 65 VHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQRLTGEALK-DAVARADV 123
Query: 199 VMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVE-LIKKGETKCYEC 248
V++ DN A R +N C+A PLI + G+ GQ+ L E CY C
Sbjct: 124 VLDCTDNMATRQEINAACVALNTPLITASAVGFGGQLMVLTPPWEQGCYRC 174
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%)
Query: 20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVAR 79
S+VL++G GG+G L +G + + D D + +SNL RQ LF + + + K+QV++
Sbjct: 31 SQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQ 90
Query: 80 NSALNFNPDANI 91
NPD +
Sbjct: 91 QRLTQLNPDIQL 102
>pdb|3H5A|A Chain A, Crystal Structure Of E. Coli Mccb
pdb|3H5A|B Chain B, Crystal Structure Of E. Coli Mccb
pdb|3H5A|C Chain C, Crystal Structure Of E. Coli Mccb
pdb|3H5A|D Chain D, Crystal Structure Of E. Coli Mccb
Length = 358
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 55/95 (57%), Gaps = 1/95 (1%)
Query: 13 LEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGK 72
++D +K +KV+++G GGIG + L SG I ++D D I+ +NL RQ LF + VGK
Sbjct: 109 VQDKLKNAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGK 168
Query: 73 SKAQVARNSALNFNPDANIYYQVDFHLNRQFLFHK 107
+K +V + L N + ++ ++ ++N HK
Sbjct: 169 NKTEVIKRELLKRNSEISV-SEIALNINDYTDLHK 202
>pdb|3H5N|A Chain A, Crystal Structure Of E. Coli Mccb + Atp
pdb|3H5N|B Chain B, Crystal Structure Of E. Coli Mccb + Atp
pdb|3H5N|C Chain C, Crystal Structure Of E. Coli Mccb + Atp
pdb|3H5N|D Chain D, Crystal Structure Of E. Coli Mccb + Atp
pdb|3H5R|A Chain A, Crystal Structure Of E. Coli Mccb + Succinimide
pdb|3H5R|B Chain B, Crystal Structure Of E. Coli Mccb + Succinimide
pdb|3H5R|C Chain C, Crystal Structure Of E. Coli Mccb + Succinimide
pdb|3H5R|D Chain D, Crystal Structure Of E. Coli Mccb + Succinimide
pdb|3H9G|A Chain A, Crystal Structure Of E. Coli Mccb + Mcca-N7isoasn
pdb|3H9G|B Chain B, Crystal Structure Of E. Coli Mccb + Mcca-N7isoasn
pdb|3H9G|C Chain C, Crystal Structure Of E. Coli Mccb + Mcca-N7isoasn
pdb|3H9G|D Chain D, Crystal Structure Of E. Coli Mccb + Mcca-N7isoasn
pdb|3H9J|A Chain A, Crystal Structure Of E. Coli Mccb + Ampcpp + Semet Mcca
pdb|3H9J|B Chain B, Crystal Structure Of E. Coli Mccb + Ampcpp + Semet Mcca
pdb|3H9J|C Chain C, Crystal Structure Of E. Coli Mccb + Ampcpp + Semet Mcca
pdb|3H9J|D Chain D, Crystal Structure Of E. Coli Mccb + Ampcpp + Semet Mcca
pdb|3H9Q|A Chain A, Crystal Structure Of E. Coli Mccb + Semet Mcca
pdb|3H9Q|B Chain B, Crystal Structure Of E. Coli Mccb + Semet Mcca
pdb|3H9Q|C Chain C, Crystal Structure Of E. Coli Mccb + Semet Mcca
pdb|3H9Q|D Chain D, Crystal Structure Of E. Coli Mccb + Semet Mcca
Length = 353
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 55/95 (57%), Gaps = 1/95 (1%)
Query: 13 LEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGK 72
++D +K +KV+++G GGIG + L SG I ++D D I+ +NL RQ LF + VGK
Sbjct: 112 VQDKLKNAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGK 171
Query: 73 SKAQVARNSALNFNPDANIYYQVDFHLNRQFLFHK 107
+K +V + L N + ++ ++ ++N HK
Sbjct: 172 NKTEVIKRELLKRNSEISV-SEIALNINDYTDLHK 205
>pdb|3GUC|A Chain A, Human Ubiquitin-Activating Enzyme 5 In Complex With Amppnp
pdb|3GUC|B Chain B, Human Ubiquitin-Activating Enzyme 5 In Complex With Amppnp
pdb|3H8V|A Chain A, Human Ubiquitin-Activating Enzyme 5 In Complex With Atp
pdb|3H8V|B Chain B, Human Ubiquitin-Activating Enzyme 5 In Complex With Atp
Length = 292
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 57/125 (45%), Gaps = 14/125 (11%)
Query: 139 IRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIS-----------AD 187
+ ++NR F F G SK Q A ++ N NPD H+ +I + ++
Sbjct: 71 VELANMNRLF-FQPHQAGLSKVQAAEHTLRNINPDVLFEVHNYNITTVENFQHFMDRISN 129
Query: 188 FGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTA--GYEGQVELIKKGETKC 245
G+ K LV++ +DN AR +N C +ESG + G ++LI GE+ C
Sbjct: 130 GGLEEGKPVDLVLSCVDNFEARMTINTACNELGQTWMESGVSENAVSGHIQLIIPGESAC 189
Query: 246 YECDP 250
+ C P
Sbjct: 190 FACAP 194
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 1 MATKIPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLN 60
MA K G+ D E I+ V +VG GG+G + L G + + D D ++++N+N
Sbjct: 20 MALKRMGIV-SDYEK-IRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMN 77
Query: 61 RQFLFHKQHVGKSKAQVARNSALNFNPD 88
R F F G SK Q A ++ N NPD
Sbjct: 78 RLF-FQPHQAGLSKVQAAEHTLRNINPD 104
>pdb|1Y8Q|A Chain A, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8Q|C Chain C, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8R|A Chain A, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|1Y8R|D Chain D, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|3KYC|A Chain A, Human Sumo E1 Complex With A Sumo1-Amp Mimic
pdb|3KYD|A Chain A, Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mimic
Length = 346
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 45/75 (60%)
Query: 17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQ 76
++ S+VL+VG G+G E+ KNL+L+G + ++D + + + QFL VG+++A+
Sbjct: 34 LRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAE 93
Query: 77 VARNSALNFNPDANI 91
+ A N NP ++
Sbjct: 94 ASLERAQNLNPMVDV 108
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Query: 147 QFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNR 206
QFL VG+++A+ + A N NP ++ I ++F QF V +R
Sbjct: 79 QFLIRTGSVGRNRAEASLERAQNLNPMVDVKVDTEDIEKKP--ESFFTQFDAVCLTCCSR 136
Query: 207 AARNHVNRMCLASEVPLIESGTAGYEG 233
V+++C + + GY G
Sbjct: 137 DVIVKVDQICHKNSIKFFTGDVFGYHG 163
>pdb|3VH1|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Atg7 (1-595)
Length = 598
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 42/67 (62%)
Query: 15 DLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSK 74
D+IK +KVL++GAG +GC + + L+ G I VD T+ SN RQ L++ + GK K
Sbjct: 323 DIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPK 382
Query: 75 AQVARNS 81
A++A S
Sbjct: 383 AELAAAS 389
>pdb|3VH2|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Atg7 (1-613)
Length = 616
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 42/67 (62%)
Query: 15 DLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSK 74
D+IK +KVL++GAG +GC + + L+ G I VD T+ SN RQ L++ + GK K
Sbjct: 323 DIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPK 382
Query: 75 AQVARNS 81
A++A S
Sbjct: 383 AELAAAS 389
>pdb|4GSK|A Chain A, Crystal Structure Of An Atg7-Atg10 Crosslinked Complex
pdb|4GSK|B Chain B, Crystal Structure Of An Atg7-Atg10 Crosslinked Complex
Length = 615
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 42/67 (62%)
Query: 15 DLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSK 74
D+IK +KVL++GAG +GC + + L+ G I VD T+ SN RQ L++ + GK K
Sbjct: 322 DIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDAGKPK 381
Query: 75 AQVARNS 81
A++A S
Sbjct: 382 AELAAAS 388
>pdb|4GSL|A Chain A, Crystal Structure Of An Atg7-Atg3 Crosslinked Complex
pdb|4GSL|B Chain B, Crystal Structure Of An Atg7-Atg3 Crosslinked Complex
Length = 615
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 42/67 (62%)
Query: 15 DLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSK 74
D+IK +KVL++GAG +GC + + L+ G I VD T+ SN RQ L++ + GK K
Sbjct: 322 DIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPK 381
Query: 75 AQVARNS 81
A++A S
Sbjct: 382 AELAAAS 388
>pdb|3VH3|A Chain A, Crystal Structure Of Atg7ctd-Atg8 Complex
pdb|3VH4|A Chain A, Crystal Structure Of Atg7ctd-Atg8-Mgatp Complex
Length = 340
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 43/73 (58%)
Query: 15 DLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSK 74
D+IK +KVL++GAG +GC + + L+ G I VD T+ SN RQ L++ + GK K
Sbjct: 30 DIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPK 89
Query: 75 AQVARNSALNFNP 87
A++A S P
Sbjct: 90 AELAAASLKRIFP 102
>pdb|3T7E|A Chain A, Atg8 Transfer From Atg7 To Atg3: A Distinctive E1-E2
Architecture And Mechanism In The Autophagy Pathway
Length = 344
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 43/73 (58%)
Query: 15 DLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSK 74
D+IK +KVL++GAG +GC + + L+ G I VD T+ SN RQ L++ + GK K
Sbjct: 34 DIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPK 93
Query: 75 AQVARNSALNFNP 87
A++A S P
Sbjct: 94 AELAAASLKRIFP 106
>pdb|3RUI|A Chain A, Crystal Structure Of Atg7c-Atg8 Complex
Length = 340
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 42/67 (62%)
Query: 15 DLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSK 74
D+IK +KVL++GAG +GC + + L+ G I VD T+ SN RQ L++ + GK K
Sbjct: 30 DIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPK 89
Query: 75 AQVARNS 81
A++A S
Sbjct: 90 AELAAAS 96
>pdb|1R4M|A Chain A, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|C Chain C, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|E Chain E, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|G Chain G, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4N|A Chain A, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|C Chain C, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|E Chain E, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|G Chain G, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
Length = 529
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 39/77 (50%)
Query: 14 EDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKS 73
++ ++ + V ++ A G E+LKNLVL G + I+D + + + F + +GK+
Sbjct: 25 QEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKN 84
Query: 74 KAQVARNSALNFNPDAN 90
+A+ A N D +
Sbjct: 85 RAEAAMEFLQELNSDVS 101
>pdb|3GZN|A Chain A, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
pdb|3GZN|C Chain C, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
Length = 534
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 39/77 (50%)
Query: 14 EDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKS 73
++ ++ + V ++ A G E+LKNLVL G + I+D + + + F + +GK+
Sbjct: 25 QEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKN 84
Query: 74 KAQVARNSALNFNPDAN 90
+A+ A N D +
Sbjct: 85 RAEAAMEFLQELNSDVS 101
>pdb|1TT5|A Chain A, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
pdb|1TT5|C Chain C, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
pdb|3DBH|A Chain A, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|C Chain C, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|E Chain E, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|G Chain G, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBL|A Chain A, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|C Chain C, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|E Chain E, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|G Chain G, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBR|A Chain A, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|C Chain C, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|E Chain E, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|G Chain G, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
Length = 531
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 39/77 (50%)
Query: 14 EDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKS 73
++ ++ + V ++ A G E+LKNLVL G + I+D + + + F + +GK+
Sbjct: 27 QEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKN 86
Query: 74 KAQVARNSALNFNPDAN 90
+A+ A N D +
Sbjct: 87 RAEAAMEFLQELNSDVS 103
>pdb|2NVU|A Chain A, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 536
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 39/77 (50%)
Query: 14 EDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKS 73
++ ++ + V ++ A G E+LKNLVL G + I+D + + + F + +GK+
Sbjct: 27 QEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKN 86
Query: 74 KAQVARNSALNFNPDAN 90
+A+ A N D +
Sbjct: 87 RAEAAMEFLQELNSDVS 103
>pdb|1YOV|A Chain A, Insights Into The Ubiquitin Transfer Cascade From The
Refined Structure Of The Activating Enzyme For Nedd8
pdb|1YOV|C Chain C, Insights Into The Ubiquitin Transfer Cascade From The
Refined Structure Of The Activating Enzyme For Nedd8
Length = 537
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 39/77 (50%)
Query: 14 EDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKS 73
++ ++ + V ++ A G E+LKNLVL G + I+D + + + F + +GK+
Sbjct: 28 QEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKN 87
Query: 74 KAQVARNSALNFNPDAN 90
+A+ A N D +
Sbjct: 88 RAEAAMEFLQELNSDVS 104
>pdb|1Z7L|A Chain A, Crystal Structure Of Fragment Of Mouse
Ubiquitin-Activating Enzyme
pdb|1Z7L|B Chain B, Crystal Structure Of Fragment Of Mouse
Ubiquitin-Activating Enzyme
pdb|1Z7L|C Chain C, Crystal Structure Of Fragment Of Mouse
Ubiquitin-Activating Enzyme
Length = 276
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 110/295 (37%), Gaps = 73/295 (24%)
Query: 255 KTYPGCTIRNTPSEPIHCIVWAKHLFNYLERLMLMKRCPLILKIQKLLERLSAMNVIRSQ 314
K+ P CT++N P+ H + WA+ F L + + L K +ER + + +Q
Sbjct: 12 KSIPICTLKNFPNAIEHTLQWARDEFEGLFK-QPAENVNQYLTDSKFVER--TLRLAGTQ 68
Query: 315 LPKLIQAVQLGILRLNPFTVLSGLNICXXXXXXXXXXXXXXXNGDVVRTSTRAWASACGY 374
++++AVQ ++ P T GD V + W +
Sbjct: 69 PLEVLEAVQRSLVLQRPQTW-----------------------GDCVTWACHHWHTQYCN 105
Query: 375 DPRKLFAKFFDADIRYLISMSDLWK-TRKAPQPLVWD---TL--------------SDAV 416
+ R+L F + S + W ++ P PL +D TL + +
Sbjct: 106 NIRQLLHNF--PPDQLTSSGAPFWSGPKRCPHPLTFDVNNTLHLDYVMAAANLFAQTYGL 163
Query: 417 AGSSKE---------------TDGGGLK----DQRVWSVAECARVFERSVRELKTKFDAA 457
GS T G+K DQ + S A V + + ELK +
Sbjct: 164 TGSQDRAAVASLLQSVQVPEFTPKSGVKIHVSDQELQSAN--ASVDDSRLEELKATLPSP 221
Query: 458 VE----KDEHLVWDKDDKP--AMDFVAACANIRAHVFSIPEKSRFDIKSMAGNII 506
+ K + ++KDD MDF+ A +N+RA + I R K +AG II
Sbjct: 222 DKLPGFKMYPIDFEKDDDSNFHMDFIVAASNLRAENYDISPADRHKSKLIAGKII 276
>pdb|3FDY|A Chain A, Pyranose 2-Oxidase Thermostable Triple Mutant,
T169gE542KV546C
Length = 623
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 5 IPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTID 55
+PG +K + + K V++VG+G IGC + LV +G+ + + D+ ID
Sbjct: 33 LPGP-DKKVPGMDIKYDVVIVGSGPIGCTYARELVGAGY-KVAMFDIGEID 81
>pdb|3BLY|A Chain A, Pyranose 2-Oxidase From Trametes Multicolor, E542kL537W
Length = 623
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 5 IPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTID 55
+PG +K + + K V++VG+G IGC + LV +G+ + + D+ ID
Sbjct: 33 LPGP-DKKVPGMDIKYDVVIVGSGPIGCTYARELVGAGY-KVAMFDIGEID 81
>pdb|3K4N|A Chain A, Pyranose 2-Oxidase F454aS455AY456A MUTANT
pdb|3K4N|B Chain B, Pyranose 2-Oxidase F454aS455AY456A MUTANT
Length = 623
Score = 32.3 bits (72), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 5 IPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTID 55
+PG +K + + K V++VG+G IGC + LV +G+ + + D+ ID
Sbjct: 33 LPGP-DKKVPGMDIKYDVVIVGSGPIGCTYARELVGAGY-KVAMFDIGEID 81
>pdb|3K4B|A Chain A, Pyranose 2-Oxidase T169s Mutant
pdb|3LSK|A Chain A, Pyranose 2-Oxidase T169s Acetate Complex
pdb|3LSK|B Chain B, Pyranose 2-Oxidase T169s Acetate Complex
pdb|3LSK|C Chain C, Pyranose 2-Oxidase T169s Acetate Complex
pdb|3LSK|D Chain D, Pyranose 2-Oxidase T169s Acetate Complex
Length = 623
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 5 IPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTID 55
+PG +K + + K V++VG+G IGC + LV +G+ + + D+ ID
Sbjct: 33 LPGP-DKKVPGMDIKYDVVIVGSGPIGCTYARELVGAGY-KVAMFDIGEID 81
>pdb|3BG7|A Chain A, Pyranose 2-oxidase From Trametes Multicolor, L537g
Mutant
pdb|3BG7|B Chain B, Pyranose 2-oxidase From Trametes Multicolor, L537g
Mutant
pdb|3BG7|C Chain C, Pyranose 2-oxidase From Trametes Multicolor, L537g
Mutant
pdb|3BG7|D Chain D, Pyranose 2-oxidase From Trametes Multicolor, L537g
Mutant
pdb|3BG7|E Chain E, Pyranose 2-oxidase From Trametes Multicolor, L537g
Mutant
pdb|3BG7|F Chain F, Pyranose 2-oxidase From Trametes Multicolor, L537g
Mutant
pdb|3BG7|G Chain G, Pyranose 2-oxidase From Trametes Multicolor, L537g
Mutant
pdb|3BG7|H Chain H, Pyranose 2-oxidase From Trametes Multicolor, L537g
Mutant
Length = 623
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 5 IPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTID 55
+PG +K + + K V++VG+G IGC + LV +G+ + + D+ ID
Sbjct: 33 LPGP-DKKVPGMDIKYDVVIVGSGPIGCTYARELVGAGY-KVAMFDIGEID 81
>pdb|3LSH|A Chain A, Pyranose 2-Oxidase T169a, Monoclinic
pdb|3LSH|B Chain B, Pyranose 2-Oxidase T169a, Monoclinic
pdb|3LSH|C Chain C, Pyranose 2-Oxidase T169a, Monoclinic
pdb|3LSH|D Chain D, Pyranose 2-Oxidase T169a, Monoclinic
pdb|3LSI|A Chain A, Pyranose 2-Oxidase T169a, Tetragonal
pdb|3LSI|B Chain B, Pyranose 2-Oxidase T169a, Tetragonal
Length = 623
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 5 IPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTID 55
+PG +K + + K V++VG+G IGC + LV +G+ + + D+ ID
Sbjct: 33 LPGP-DKKVPGMDIKYDVVIVGSGPIGCTYARELVGAGY-KVAMFDIGEID 81
>pdb|3K4M|A Chain A, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|B Chain B, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|C Chain C, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|D Chain D, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|E Chain E, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|F Chain F, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|G Chain G, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|H Chain H, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
Length = 623
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 5 IPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTID 55
+PG +K + + K V++VG+G IGC + LV +G+ + + D+ ID
Sbjct: 33 LPGP-DKKVPGMDIKYDVVIVGSGPIGCTYARELVGAGY-KVAMFDIGEID 81
>pdb|3K4K|A Chain A, Pyranose 2-Oxidase F454n Mutant
pdb|3K4L|A Chain A, Pyranose 2-Oxidase F454n Mutant In Complex With 2fg
pdb|3K4L|B Chain B, Pyranose 2-Oxidase F454n Mutant In Complex With 2fg
Length = 623
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 5 IPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTID 55
+PG +K + + K V++VG+G IGC + LV +G+ + + D+ ID
Sbjct: 33 LPGP-DKKVPGMDIKYDVVIVGSGPIGCTYARELVGAGY-KVAMFDIGEID 81
>pdb|1TT0|A Chain A, Crystal Structure Of Pyranose 2-Oxidase
pdb|1TT0|B Chain B, Crystal Structure Of Pyranose 2-Oxidase
pdb|1TT0|C Chain C, Crystal Structure Of Pyranose 2-Oxidase
pdb|1TT0|D Chain D, Crystal Structure Of Pyranose 2-Oxidase
pdb|2IGK|A Chain A, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|B Chain B, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|C Chain C, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|D Chain D, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|E Chain E, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|F Chain F, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|G Chain G, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|H Chain H, Crystal Structure Of Recombinant Pyranose 2-Oxidase
Length = 623
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 5 IPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTID 55
+PG +K + + K V++VG+G IGC + LV +G+ + + D+ ID
Sbjct: 33 LPGP-DKKVPGMDIKYDVVIVGSGPIGCTYARELVGAGY-KVAMFDIGEID 81
>pdb|3BG6|A Chain A, Pyranose 2-Oxidase From Trametes Multicolor, E542k
Mutant
pdb|3BG6|B Chain B, Pyranose 2-Oxidase From Trametes Multicolor, E542k
Mutant
pdb|3BG6|C Chain C, Pyranose 2-Oxidase From Trametes Multicolor, E542k
Mutant
pdb|3BG6|D Chain D, Pyranose 2-Oxidase From Trametes Multicolor, E542k
Mutant
pdb|3BG6|E Chain E, Pyranose 2-Oxidase From Trametes Multicolor, E542k
Mutant
pdb|3BG6|F Chain F, Pyranose 2-Oxidase From Trametes Multicolor, E542k
Mutant
pdb|3BG6|G Chain G, Pyranose 2-Oxidase From Trametes Multicolor, E542k
Mutant
pdb|3BG6|H Chain H, Pyranose 2-Oxidase From Trametes Multicolor, E542k
Mutant
Length = 623
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 5 IPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTID 55
+PG +K + + K V++VG+G IGC + LV +G+ + + D+ ID
Sbjct: 33 LPGP-DKKVPGMDIKYDVVIVGSGPIGCTYARELVGAGY-KVAMFDIGEID 81
>pdb|2IGN|A Chain A, Crystal Structure Of Recombinant Pyranose 2-Oxidase
H167a Mutant
pdb|2IGN|B Chain B, Crystal Structure Of Recombinant Pyranose 2-Oxidase
H167a Mutant
pdb|2IGN|D Chain D, Crystal Structure Of Recombinant Pyranose 2-Oxidase
H167a Mutant
pdb|2IGN|C Chain C, Crystal Structure Of Recombinant Pyranose 2-Oxidase
H167a Mutant
pdb|2IGN|E Chain E, Crystal Structure Of Recombinant Pyranose 2-Oxidase
H167a Mutant
pdb|2IGN|F Chain F, Crystal Structure Of Recombinant Pyranose 2-Oxidase
H167a Mutant
pdb|2IGN|H Chain H, Crystal Structure Of Recombinant Pyranose 2-Oxidase
H167a Mutant
pdb|2IGN|G Chain G, Crystal Structure Of Recombinant Pyranose 2-Oxidase
H167a Mutant
pdb|2IGO|A Chain A, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant
With 2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|B Chain B, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant
With 2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|D Chain D, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant
With 2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|C Chain C, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant
With 2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|E Chain E, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant
With 2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|F Chain F, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant
With 2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|H Chain H, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant
With 2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|G Chain G, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant
With 2- Fluoro-2-Deoxy-D-Glucose
pdb|3LSM|A Chain A, Pyranose 2-Oxidase H167a Mutant With Flavin N(5) Sulfite
Adduct
pdb|3LSM|B Chain B, Pyranose 2-Oxidase H167a Mutant With Flavin N(5) Sulfite
Adduct
pdb|3PL8|A Chain A, Pyranose 2-Oxidase H167a Complex With
3-Deoxy-3-Fluoro-Beta-D-Glucose
Length = 623
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 5 IPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTID 55
+PG +K + + K V++VG+G IGC + LV +G+ + + D+ ID
Sbjct: 33 LPGP-DKKVPGMDIKYDVVIVGSGPIGCTYARELVGAGY-KVAMFDIGEID 81
>pdb|2IGM|A Chain A, Crystal Structure Of Recombinant Pyranose 2-Oxidase
H548n Mutant
pdb|2IGM|B Chain B, Crystal Structure Of Recombinant Pyranose 2-Oxidase
H548n Mutant
pdb|2IGM|D Chain D, Crystal Structure Of Recombinant Pyranose 2-Oxidase
H548n Mutant
pdb|2IGM|C Chain C, Crystal Structure Of Recombinant Pyranose 2-Oxidase
H548n Mutant
pdb|2IGM|E Chain E, Crystal Structure Of Recombinant Pyranose 2-Oxidase
H548n Mutant
pdb|2IGM|F Chain F, Crystal Structure Of Recombinant Pyranose 2-Oxidase
H548n Mutant
pdb|2IGM|G Chain G, Crystal Structure Of Recombinant Pyranose 2-Oxidase
H548n Mutant
pdb|2IGM|H Chain H, Crystal Structure Of Recombinant Pyranose 2-Oxidase
H548n Mutant
Length = 623
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 5 IPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTID 55
+PG +K + + K V++VG+G IGC + LV +G+ + + D+ ID
Sbjct: 33 LPGP-DKKVPGMDIKYDVVIVGSGPIGCTYARELVGAGY-KVAMFDIGEID 81
>pdb|3K4J|A Chain A, Pyranose 2-Oxidase H450q Mutant
Length = 623
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 5 IPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTID 55
+PG +K + + K V++VG+G IGC + LV +G+ + + D+ ID
Sbjct: 33 LPGP-DKKVPGMDIKYDVVIVGSGPIGCTYARELVGAGY-KVAMFDIGEID 81
>pdb|3K4C|A Chain A, Pyranose 2-Oxidase H167aT169G MUTANT
pdb|3K4C|B Chain B, Pyranose 2-Oxidase H167aT169G MUTANT
pdb|3K4C|C Chain C, Pyranose 2-Oxidase H167aT169G MUTANT
pdb|3K4C|D Chain D, Pyranose 2-Oxidase H167aT169G MUTANT
Length = 623
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 5 IPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTID 55
+PG +K + + K V++VG+G IGC + LV +G+ + + D+ ID
Sbjct: 33 LPGP-DKKVPGMDIKYDVVIVGSGPIGCTYARELVGAGY-KVAMFDIGEID 81
>pdb|2F6C|A Chain A, Reaction Geometry And Thermostability Of Pyranose
2-Oxidase From The White-Rot Fungus Peniophora Sp.,
Thermostability Mutant E542k
Length = 595
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 5 IPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTID 55
+PG +K + + K V++VG+G IGC + LV +G+ + + D+ ID
Sbjct: 5 LPGP-DKKVPGMDIKYDVVIVGSGPIGCTYARELVGAGY-KVAMFDIGEID 53
>pdb|2F5V|A Chain A, Reaction Geometry And Thermostability Mutant Of Pyranose
2-Oxidase From The White-Rot Fungus Peniophora Sp
Length = 595
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 5 IPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTID 55
+PG +K + + K V++VG+G IGC + LV +G+ + + D+ ID
Sbjct: 5 LPGP-DKKVPGMDIKYDVVIVGSGPIGCTYARELVGAGY-KVAMFDIGEID 53
>pdb|3GSI|A Chain A, Crystal Structure Of D552a Dimethylglycine Oxidase
Mutant Of Arthrobacter Globiformis In Complex With
Tetrahydrofolate
Length = 827
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 21/30 (70%)
Query: 21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVD 50
+++++GAG +G L LV G++NI ++D
Sbjct: 3 RIVIIGAGIVGTNLADELVTRGWNNITVLD 32
>pdb|1PJ5|A Chain A, Crystal Structure Of Dimethylglycine Oxidase Of
Arthrobacter Globiformis In Complex With Acetate
pdb|1PJ6|A Chain A, Crystal Structure Of Dimethylglycine Oxidase Of
Arthrobacter Globiformis In Complex With Folic Acid
pdb|1PJ7|A Chain A, Structure Of Dimethylglycine Oxidase Of Arthrobacter
Globiformis In Complex With Folinic Acid
Length = 830
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 21/30 (70%)
Query: 21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVD 50
+++++GAG +G L LV G++NI ++D
Sbjct: 6 RIVIIGAGIVGTNLADELVTRGWNNITVLD 35
>pdb|1HEY|A Chain A, Investigating The Structural Determinants Of The
P21-Like Triphosphate And Mg2+ Binding Site
Length = 128
Score = 30.0 bits (66), Expect = 4.6, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 18 KKSKVLVVGAGGIGCELLKNLVLS-GFSNIEIVDLDTIDVSN 58
K+ K LVVG GG G ++NL+ GF+N+E + D +D N
Sbjct: 3 KELKFLVVGNGGTGKSTVRNLLKELGFNNVEDAE-DGVDALN 43
>pdb|2V3A|A Chain A, Crystal Structure Of Rubredoxin Reductase From Pseudomonas
Aeruginosa.
pdb|2V3B|A Chain A, Crystal Structure Of The Electron Transfer Complex
Rubredoxin - Rubredoxin Reductase From Pseudomonas
Aeruginosa
Length = 384
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 7/39 (17%)
Query: 12 DLEDLIK-------KSKVLVVGAGGIGCELLKNLVLSGF 43
DLED + K +VL++GAG IGCE +L G+
Sbjct: 131 DLEDYARFRQAAAGKRRVLLLGAGLIGCEFANDLSSGGY 169
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,690,617
Number of Sequences: 62578
Number of extensions: 754072
Number of successful extensions: 1929
Number of sequences better than 100.0: 62
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1778
Number of HSP's gapped (non-prelim): 128
length of query: 726
length of database: 14,973,337
effective HSP length: 106
effective length of query: 620
effective length of database: 8,340,069
effective search space: 5170842780
effective search space used: 5170842780
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)