Query psy9783
Match_columns 726
No_of_seqs 332 out of 1960
Neff 5.3
Searched_HMMs 46136
Date Fri Aug 16 19:28:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9783.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9783hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2013|consensus 100.0 2E-115 4E-120 940.3 27.2 496 10-637 3-510 (603)
2 TIGR01408 Ube1 ubiquitin-activ 100.0 1E-102 2E-107 931.3 40.1 519 2-655 402-994 (1008)
3 KOG2012|consensus 100.0 5.4E-99 1E-103 849.0 26.6 515 3-653 414-998 (1013)
4 cd01490 Ube1_repeat2 Ubiquitin 100.0 1.9E-92 4.2E-97 778.3 39.3 398 21-619 1-427 (435)
5 cd01489 Uba2_SUMO Ubiquitin ac 100.0 6E-85 1.3E-89 695.0 31.8 312 21-567 1-312 (312)
6 cd01484 E1-2_like Ubiquitin ac 100.0 8.3E-66 1.8E-70 529.3 24.8 233 21-525 1-234 (234)
7 cd01488 Uba3_RUB Ubiquitin act 100.0 3.5E-64 7.6E-69 531.0 23.7 281 21-568 1-291 (291)
8 KOG2015|consensus 100.0 1.6E-62 3.5E-67 510.4 22.9 353 10-632 31-398 (422)
9 TIGR02356 adenyl_thiF thiazole 100.0 4.9E-36 1.1E-40 302.2 17.2 178 2-265 2-182 (202)
10 PRK08223 hypothetical protein; 100.0 2.4E-35 5.2E-40 310.7 17.4 178 2-266 10-202 (287)
11 cd00757 ThiF_MoeB_HesA_family 100.0 8.1E-35 1.8E-39 298.0 18.6 176 1-262 1-179 (228)
12 PRK05690 molybdopterin biosynt 100.0 1.1E-34 2.5E-39 300.5 16.8 164 2-251 13-179 (245)
13 PRK07411 hypothetical protein; 100.0 1.5E-34 3.2E-39 317.8 16.6 177 2-264 19-199 (390)
14 cd01491 Ube1_repeat1 Ubiquitin 100.0 1.5E-34 3.3E-39 305.3 15.4 185 1-278 1-187 (286)
15 PRK05597 molybdopterin biosynt 100.0 3.3E-34 7.2E-39 311.6 16.5 178 2-265 9-190 (355)
16 PRK08328 hypothetical protein; 100.0 6.1E-34 1.3E-38 292.7 16.0 164 2-251 10-174 (231)
17 TIGR02355 moeB molybdopterin s 100.0 3.2E-33 6.9E-38 289.1 17.4 164 2-251 5-171 (240)
18 PRK07878 molybdopterin biosynt 100.0 3.3E-33 7.2E-38 307.4 17.7 175 2-262 23-205 (392)
19 cd01492 Aos1_SUMO Ubiquitin ac 100.0 4.1E-33 9E-38 280.3 14.8 149 2-237 4-152 (197)
20 PRK05600 thiamine biosynthesis 100.0 7.4E-33 1.6E-37 302.5 16.7 176 2-263 22-204 (370)
21 cd01485 E1-1_like Ubiquitin ac 100.0 2E-32 4.3E-37 275.5 15.9 152 2-238 2-156 (198)
22 PRK12475 thiamine/molybdopteri 100.0 2.4E-32 5.2E-37 295.3 17.4 175 2-262 5-183 (338)
23 PRK07688 thiamine/molybdopteri 100.0 4.3E-32 9.4E-37 293.4 16.6 174 2-261 5-182 (339)
24 PRK08762 molybdopterin biosynt 100.0 3.9E-31 8.5E-36 289.3 17.3 178 2-265 116-301 (376)
25 COG0476 ThiF Dinucleotide-util 100.0 5.6E-31 1.2E-35 273.2 16.2 165 2-252 11-178 (254)
26 PRK14851 hypothetical protein; 100.0 3.2E-30 7E-35 299.4 16.0 163 2-251 26-190 (679)
27 TIGR01381 E1_like_apg7 E1-like 100.0 1E-29 2.2E-34 289.2 17.3 207 7-285 326-561 (664)
28 PRK14852 hypothetical protein; 100.0 9.1E-30 2E-34 300.5 16.6 163 2-251 315-479 (989)
29 cd01493 APPBP1_RUB Ubiquitin a 100.0 5.2E-29 1.1E-33 276.1 15.8 166 2-252 3-168 (425)
30 TIGR03736 PRTRC_ThiF PRTRC sys 100.0 6.9E-29 1.5E-33 257.1 15.1 164 17-272 9-201 (244)
31 PF00899 ThiF: ThiF family; I 100.0 1.7E-28 3.7E-33 231.4 14.0 134 18-237 1-134 (135)
32 cd00755 YgdL_like Family of ac 100.0 2.8E-28 6E-33 251.1 15.3 141 9-234 1-141 (231)
33 cd01486 Apg7 Apg7 is an E1-lik 100.0 2.7E-28 5.8E-33 258.0 15.3 193 21-285 1-222 (307)
34 PRK08644 thiamine biosynthesis 100.0 6.9E-28 1.5E-32 245.1 16.5 158 4-248 13-173 (212)
35 PRK15116 sulfur acceptor prote 99.9 1.1E-27 2.4E-32 251.2 14.9 145 2-232 13-158 (268)
36 KOG2017|consensus 99.9 1.8E-28 3.9E-33 258.6 7.6 168 8-261 55-224 (427)
37 cd01483 E1_enzyme_family Super 99.9 2.4E-27 5.2E-32 225.2 14.6 133 21-239 1-133 (143)
38 PRK07877 hypothetical protein; 99.9 3.2E-27 7E-32 275.3 15.9 170 2-262 90-265 (722)
39 TIGR01408 Ube1 ubiquitin-activ 99.9 5.9E-27 1.3E-31 281.5 15.8 157 1-250 6-164 (1008)
40 cd01487 E1_ThiF_like E1_ThiF_l 99.9 5.5E-26 1.2E-30 224.5 15.8 142 21-249 1-145 (174)
41 TIGR02354 thiF_fam2 thiamine b 99.9 5E-25 1.1E-29 222.4 16.2 158 5-249 7-168 (200)
42 COG1179 Dinucleotide-utilizing 99.9 1.6E-25 3.5E-30 228.4 10.9 145 2-231 13-157 (263)
43 TIGR03603 cyclo_dehy_ocin bact 99.9 3.2E-25 7E-30 238.1 10.1 147 3-250 56-208 (318)
44 PRK06153 hypothetical protein; 99.9 1.5E-23 3.2E-28 228.2 14.6 147 10-251 167-317 (393)
45 PF02134 UBACT: Repeat in ubiq 99.9 3.9E-23 8.4E-28 174.6 7.2 66 465-530 1-66 (67)
46 KOG2336|consensus 99.9 4.7E-22 1E-26 205.2 11.0 166 11-251 74-241 (422)
47 KOG2014|consensus 99.9 9.9E-22 2.1E-26 205.1 10.5 152 2-240 14-165 (331)
48 PTZ00245 ubiquitin activating 99.9 1.4E-21 2.9E-26 201.6 10.4 91 2-93 9-99 (287)
49 KOG2018|consensus 99.8 9.8E-20 2.1E-24 190.6 9.0 146 3-233 58-203 (430)
50 KOG2337|consensus 99.8 2.7E-19 6E-24 196.6 11.6 206 7-284 328-564 (669)
51 KOG2016|consensus 99.8 1.1E-19 2.4E-24 197.0 8.2 165 2-251 10-174 (523)
52 KOG2012|consensus 99.8 2.4E-19 5.3E-24 205.1 8.1 149 1-239 19-167 (1013)
53 PF10585 UBA_e1_thiolCys: Ubiq 99.5 6E-15 1.3E-19 115.5 0.0 45 241-285 1-45 (45)
54 TIGR03693 ocin_ThiF_like putat 99.4 3.2E-13 7E-18 154.0 10.6 137 10-249 120-261 (637)
55 PF09358 UBA_e1_C: Ubiquitin-a 99.3 1E-12 2.2E-17 124.1 1.4 106 535-653 1-114 (125)
56 PF14732 UAE_UbL: Ubiquitin/SU 98.8 7.8E-09 1.7E-13 92.0 5.0 73 574-650 1-78 (87)
57 TIGR03882 cyclo_dehyd_2 bacter 97.6 6.8E-05 1.5E-09 76.1 5.1 39 9-47 95-134 (193)
58 cd01490 Ube1_repeat2 Ubiquitin 97.3 0.00035 7.6E-09 78.9 6.1 92 369-492 172-276 (435)
59 COG1748 LYS9 Saccharopine dehy 97.2 0.0013 2.7E-08 73.5 9.2 41 189-230 62-102 (389)
60 PRK12549 shikimate 5-dehydroge 97.0 0.0021 4.6E-08 68.9 8.9 36 17-52 125-160 (284)
61 PRK06718 precorrin-2 dehydroge 96.9 0.0088 1.9E-07 61.1 11.9 35 16-51 7-41 (202)
62 COG4015 Predicted dinucleotide 96.6 0.0073 1.6E-07 59.9 8.2 59 19-79 18-79 (217)
63 PF08825 E2_bind: E2 binding d 96.6 0.0017 3.8E-08 57.8 3.0 51 581-633 6-60 (84)
64 PF13241 NAD_binding_7: Putati 96.5 0.0052 1.1E-07 56.0 5.7 37 16-53 4-40 (103)
65 TIGR01470 cysG_Nterm siroheme 96.4 0.032 7E-07 57.2 11.7 35 17-52 7-41 (205)
66 PF03435 Saccharop_dh: Sacchar 96.1 0.016 3.4E-07 64.1 7.9 35 190-225 62-96 (386)
67 PRK06719 precorrin-2 dehydroge 96.0 0.087 1.9E-06 51.8 11.8 36 16-52 10-45 (157)
68 PF01488 Shikimate_DH: Shikima 95.9 0.012 2.6E-07 56.1 5.4 35 16-50 9-43 (135)
69 PRK05562 precorrin-2 dehydroge 95.5 0.12 2.7E-06 53.9 11.1 40 189-228 79-118 (223)
70 PRK12548 shikimate 5-dehydroge 95.2 0.071 1.5E-06 57.3 8.6 35 17-51 124-158 (289)
71 cd05311 NAD_bind_2_malic_enz N 94.9 0.031 6.7E-07 58.1 4.7 37 16-52 22-60 (226)
72 PF00070 Pyr_redox: Pyridine n 94.7 0.055 1.2E-06 46.5 5.0 31 21-52 1-31 (80)
73 PRK08293 3-hydroxybutyryl-CoA 94.2 0.32 7E-06 51.9 10.6 32 20-52 4-35 (287)
74 COG0373 HemA Glutamyl-tRNA red 94.1 0.074 1.6E-06 60.1 5.7 46 16-80 175-220 (414)
75 PRK14106 murD UDP-N-acetylmura 93.8 0.22 4.7E-06 56.1 8.7 36 17-53 3-38 (450)
76 PRK05808 3-hydroxybutyryl-CoA 93.6 0.62 1.3E-05 49.5 11.3 32 20-52 4-35 (282)
77 PRK07066 3-hydroxybutyryl-CoA 93.6 0.38 8.2E-06 52.8 9.9 93 191-283 79-175 (321)
78 PRK06130 3-hydroxybutyryl-CoA 93.6 0.49 1.1E-05 50.8 10.6 32 20-52 5-36 (311)
79 PF01118 Semialdhyde_dh: Semia 93.4 0.49 1.1E-05 44.1 8.9 37 190-227 61-97 (121)
80 PRK07819 3-hydroxybutyryl-CoA 93.3 0.15 3.2E-06 54.8 6.1 92 193-285 82-179 (286)
81 COG1648 CysG Siroheme synthase 93.2 0.3 6.6E-06 50.5 7.9 42 188-229 65-106 (210)
82 PRK10637 cysG siroheme synthas 93.0 0.84 1.8E-05 52.3 11.9 40 188-227 65-104 (457)
83 COG0569 TrkA K+ transport syst 92.7 0.74 1.6E-05 47.9 10.0 32 20-52 1-32 (225)
84 cd05191 NAD_bind_amino_acid_DH 92.7 0.18 3.8E-06 44.3 4.7 38 17-54 21-58 (86)
85 PRK04148 hypothetical protein; 92.6 0.62 1.3E-05 45.1 8.6 50 179-230 63-112 (134)
86 TIGR01809 Shik-DH-AROM shikima 92.6 0.15 3.2E-06 54.7 4.8 35 17-51 123-157 (282)
87 KOG2013|consensus 92.5 0.036 7.8E-07 63.0 0.0 55 463-517 242-296 (603)
88 cd01065 NAD_bind_Shikimate_DH 92.4 0.18 4E-06 47.9 4.7 36 17-52 17-52 (155)
89 PRK00048 dihydrodipicolinate r 92.2 0.7 1.5E-05 48.9 9.3 38 193-232 58-95 (257)
90 PRK00258 aroE shikimate 5-dehy 92.1 0.19 4E-06 53.7 4.8 35 17-51 121-155 (278)
91 PF02826 2-Hacid_dh_C: D-isome 91.4 0.26 5.6E-06 49.1 4.7 37 15-52 32-68 (178)
92 PLN02819 lysine-ketoglutarate 91.4 0.71 1.5E-05 57.9 9.4 35 192-227 645-679 (1042)
93 PF01113 DapB_N: Dihydrodipico 91.4 0.54 1.2E-05 44.3 6.6 39 191-231 63-101 (124)
94 PRK14027 quinate/shikimate deh 91.3 0.25 5.4E-06 53.2 4.8 36 17-52 125-160 (283)
95 PRK11880 pyrroline-5-carboxyla 91.2 0.35 7.5E-06 50.7 5.7 31 20-50 3-35 (267)
96 PRK12749 quinate/shikimate deh 91.1 0.29 6.2E-06 52.9 5.0 34 17-50 122-155 (288)
97 PRK13940 glutamyl-tRNA reducta 91.1 0.24 5.2E-06 56.2 4.5 35 16-50 178-212 (414)
98 PF00056 Ldh_1_N: lactate/mala 90.6 0.4 8.6E-06 46.3 5.0 33 20-52 1-35 (141)
99 PTZ00082 L-lactate dehydrogena 90.6 0.32 7E-06 53.2 4.9 36 17-52 4-39 (321)
100 TIGR01035 hemA glutamyl-tRNA r 90.6 0.31 6.7E-06 55.2 4.9 36 16-51 177-212 (417)
101 PF03949 Malic_M: Malic enzyme 90.6 0.36 7.9E-06 51.4 5.1 39 16-54 22-70 (255)
102 cd05291 HicDH_like L-2-hydroxy 90.6 0.35 7.5E-06 52.3 5.0 33 20-52 1-34 (306)
103 PRK05708 2-dehydropantoate 2-r 90.5 0.3 6.5E-06 52.8 4.5 33 19-52 2-34 (305)
104 PTZ00117 malate dehydrogenase; 90.5 0.33 7.2E-06 53.0 4.9 36 17-52 3-38 (319)
105 COG1086 Predicted nucleoside-d 89.9 1.2 2.6E-05 52.3 8.8 44 11-54 242-286 (588)
106 PLN02427 UDP-apiose/xylose syn 89.8 1.3 2.8E-05 48.8 8.9 36 16-51 11-47 (386)
107 PLN03209 translocon at the inn 89.8 2.6 5.7E-05 49.8 11.7 33 18-51 79-112 (576)
108 PF13460 NAD_binding_10: NADH( 89.7 2.1 4.5E-05 41.6 9.3 27 22-49 1-28 (183)
109 cd01075 NAD_bind_Leu_Phe_Val_D 89.7 0.44 9.5E-06 48.6 4.6 35 17-52 26-60 (200)
110 PRK14982 acyl-ACP reductase; P 89.6 0.41 8.8E-06 53.1 4.6 37 16-52 152-190 (340)
111 PF05237 MoeZ_MoeB: MoeZ/MoeB 89.5 0.39 8.5E-06 42.4 3.6 58 506-569 23-82 (84)
112 PRK06197 short chain dehydroge 89.4 0.9 2E-05 48.3 7.0 37 14-51 11-48 (306)
113 cd05213 NAD_bind_Glutamyl_tRNA 89.2 0.47 1E-05 51.5 4.8 36 17-52 176-211 (311)
114 PRK00045 hemA glutamyl-tRNA re 89.1 0.47 1E-05 53.7 4.9 36 17-52 180-215 (423)
115 PRK00066 ldh L-lactate dehydro 89.1 0.48 1E-05 51.7 4.7 33 19-51 6-39 (315)
116 PRK09599 6-phosphogluconate de 89.0 3.4 7.4E-05 44.5 11.1 31 21-52 2-32 (301)
117 cd00762 NAD_bind_malic_enz NAD 89.0 0.37 8.1E-06 51.3 3.6 40 15-54 21-70 (254)
118 PRK11908 NAD-dependent epimera 88.8 3.3 7.1E-05 44.9 10.9 32 20-51 2-34 (347)
119 cd05312 NAD_bind_1_malic_enz N 88.8 0.53 1.1E-05 50.8 4.7 40 15-54 21-70 (279)
120 cd01080 NAD_bind_m-THF_DH_Cycl 88.7 0.58 1.2E-05 46.8 4.6 35 16-51 41-76 (168)
121 PRK06522 2-dehydropantoate 2-r 88.7 0.57 1.2E-05 49.6 4.9 31 21-52 2-32 (304)
122 TIGR02853 spore_dpaA dipicolin 88.6 0.54 1.2E-05 50.7 4.7 35 16-51 148-182 (287)
123 PRK12550 shikimate 5-dehydroge 88.5 0.65 1.4E-05 49.8 5.1 32 20-51 123-154 (272)
124 PRK00676 hemA glutamyl-tRNA re 88.3 0.54 1.2E-05 52.1 4.5 34 16-49 171-204 (338)
125 PRK06249 2-dehydropantoate 2-r 88.1 0.61 1.3E-05 50.4 4.7 33 19-52 5-37 (313)
126 PRK07063 short chain dehydroge 88.1 2 4.3E-05 44.2 8.2 34 16-50 4-38 (260)
127 PF02719 Polysacc_synt_2: Poly 88.0 0.48 1E-05 51.4 3.8 41 22-62 1-42 (293)
128 cd05211 NAD_bind_Glu_Leu_Phe_V 87.9 0.66 1.4E-05 48.2 4.6 38 16-53 20-57 (217)
129 PRK09242 tropinone reductase; 87.9 1.8 4E-05 44.3 7.9 35 16-51 6-41 (257)
130 PRK15181 Vi polysaccharide bio 87.7 2.4 5.1E-05 46.2 9.0 36 16-52 12-48 (348)
131 PF02737 3HCDH_N: 3-hydroxyacy 87.5 0.67 1.5E-05 46.5 4.2 31 21-52 1-31 (180)
132 cd05290 LDH_3 A subgroup of L- 87.5 0.7 1.5E-05 50.4 4.7 31 21-51 1-32 (307)
133 PLN00203 glutamyl-tRNA reducta 87.4 0.62 1.3E-05 54.4 4.5 35 17-51 264-298 (519)
134 COG1893 ApbA Ketopantoate redu 87.4 0.66 1.4E-05 50.6 4.4 29 20-49 1-29 (307)
135 PRK05854 short chain dehydroge 87.2 2 4.2E-05 46.3 7.9 35 16-51 11-46 (313)
136 PRK09496 trkA potassium transp 87.1 3.5 7.6E-05 46.4 10.2 32 20-52 1-32 (453)
137 PRK06035 3-hydroxyacyl-CoA deh 86.8 0.85 1.8E-05 48.7 4.8 32 20-52 4-35 (291)
138 PRK08618 ornithine cyclodeamin 86.8 2.2 4.7E-05 46.7 8.0 35 18-52 126-161 (325)
139 PF01266 DAO: FAD dependent ox 86.7 0.96 2.1E-05 47.7 5.2 34 21-55 1-34 (358)
140 TIGR01373 soxB sarcosine oxida 86.7 1.1 2.4E-05 49.6 5.8 37 19-55 30-67 (407)
141 PRK07634 pyrroline-5-carboxyla 86.7 3.8 8.3E-05 42.2 9.5 26 18-43 3-28 (245)
142 PLN02206 UDP-glucuronate decar 86.7 4.5 9.7E-05 46.2 10.8 33 18-51 118-151 (442)
143 PRK11259 solA N-methyltryptoph 86.6 0.78 1.7E-05 49.8 4.5 35 19-54 3-37 (376)
144 PRK12409 D-amino acid dehydrog 86.5 0.87 1.9E-05 50.5 4.9 33 20-53 2-34 (410)
145 TIGR02355 moeB molybdopterin s 86.5 0.67 1.4E-05 48.7 3.8 44 131-174 51-94 (240)
146 PRK13403 ketol-acid reductoiso 86.5 0.86 1.9E-05 50.3 4.7 36 14-50 11-46 (335)
147 PF02558 ApbA: Ketopantoate re 86.3 1.1 2.4E-05 42.5 4.9 28 22-50 1-28 (151)
148 PRK05476 S-adenosyl-L-homocyst 85.9 0.88 1.9E-05 51.9 4.6 36 17-53 210-245 (425)
149 COG0281 SfcA Malic enzyme [Ene 85.9 0.72 1.6E-05 52.2 3.7 40 15-54 195-236 (432)
150 PRK06223 malate dehydrogenase; 85.8 1 2.3E-05 48.3 4.9 32 20-51 3-34 (307)
151 PRK07530 3-hydroxybutyryl-CoA 85.6 1.1 2.4E-05 47.8 4.9 33 19-52 4-36 (292)
152 cd05293 LDH_1 A subgroup of L- 85.6 1 2.2E-05 49.2 4.7 33 19-51 3-36 (312)
153 PRK13243 glyoxylate reductase; 85.5 0.97 2.1E-05 49.7 4.5 35 16-51 147-181 (333)
154 PRK08306 dipicolinate synthase 85.5 1.1 2.3E-05 48.6 4.8 35 17-52 150-184 (296)
155 COG0665 DadA Glycine/D-amino a 85.5 1.2 2.6E-05 48.4 5.2 40 18-58 3-42 (387)
156 PLN02520 bifunctional 3-dehydr 85.4 0.93 2E-05 53.0 4.6 34 17-51 377-410 (529)
157 PRK11730 fadB multifunctional 85.4 4.3 9.4E-05 49.3 10.3 91 193-283 390-484 (715)
158 PRK08251 short chain dehydroge 85.3 4.2 9.1E-05 41.3 8.8 32 19-51 2-34 (248)
159 cd01076 NAD_bind_1_Glu_DH NAD( 85.2 3.7 8E-05 42.9 8.5 38 15-52 27-64 (227)
160 PRK05335 tRNA (uracil-5-)-meth 85.1 1.1 2.3E-05 51.4 4.7 34 19-53 2-35 (436)
161 PRK09260 3-hydroxybutyryl-CoA 85.1 1.1 2.5E-05 47.6 4.8 32 20-52 2-33 (288)
162 COG0039 Mdh Malate/lactate deh 85.0 1 2.2E-05 49.5 4.3 33 20-52 1-34 (313)
163 cd05292 LDH_2 A subgroup of L- 85.0 1.2 2.7E-05 48.2 5.1 31 21-51 2-33 (308)
164 PRK12480 D-lactate dehydrogena 84.8 1.2 2.6E-05 49.1 4.8 36 16-52 143-178 (330)
165 PRK08655 prephenate dehydrogen 84.8 1.5 3.3E-05 50.0 5.8 31 21-52 2-33 (437)
166 PRK12367 short chain dehydroge 84.8 1.6 3.4E-05 45.6 5.5 41 11-52 6-47 (245)
167 COG0169 AroE Shikimate 5-dehyd 84.7 1.3 2.7E-05 48.1 4.8 32 19-50 126-157 (283)
168 PRK07062 short chain dehydroge 84.6 3.3 7.1E-05 42.7 7.7 35 17-52 6-41 (265)
169 TIGR01377 soxA_mon sarcosine o 84.6 1.2 2.7E-05 48.4 4.8 33 21-54 2-34 (380)
170 PLN02928 oxidoreductase family 84.6 1 2.2E-05 49.9 4.1 35 16-51 156-190 (347)
171 CHL00194 ycf39 Ycf39; Provisio 84.5 7.3 0.00016 41.8 10.6 30 21-51 2-32 (317)
172 PRK08264 short chain dehydroge 84.4 1.3 2.8E-05 44.7 4.6 36 17-52 4-40 (238)
173 PRK01438 murD UDP-N-acetylmura 84.4 1.1 2.4E-05 51.1 4.5 35 17-52 14-48 (480)
174 PRK00711 D-amino acid dehydrog 84.3 1.3 2.8E-05 49.0 4.9 32 21-53 2-33 (416)
175 TIGR00518 alaDH alanine dehydr 84.3 1.2 2.7E-05 49.7 4.7 35 17-52 165-199 (370)
176 PRK06129 3-hydroxyacyl-CoA deh 84.2 1.3 2.8E-05 47.9 4.7 32 20-52 3-34 (308)
177 PRK11150 rfaD ADP-L-glycero-D- 84.2 4.2 9.1E-05 43.0 8.5 31 22-52 2-33 (308)
178 PRK07502 cyclohexadienyl dehyd 84.2 1.3 2.8E-05 47.7 4.7 34 19-52 6-40 (307)
179 PRK07231 fabG 3-ketoacyl-(acyl 84.1 1.1 2.4E-05 45.3 4.0 35 17-52 3-38 (251)
180 PRK15469 ghrA bifunctional gly 84.0 0.71 1.5E-05 50.4 2.6 35 16-51 133-167 (312)
181 TIGR00507 aroE shikimate 5-deh 84.0 1.4 3.1E-05 46.6 4.9 33 18-51 116-148 (270)
182 PRK08229 2-dehydropantoate 2-r 84.0 1.2 2.6E-05 48.3 4.3 31 20-51 3-33 (341)
183 PF02254 TrkA_N: TrkA-N domain 84.0 1.9 4E-05 39.1 5.0 32 22-54 1-32 (116)
184 cd00401 AdoHcyase S-adenosyl-L 83.9 1.3 2.8E-05 50.4 4.7 35 17-52 200-234 (413)
185 PLN02695 GDP-D-mannose-3',5'-e 83.9 5.7 0.00012 43.9 9.7 33 18-51 20-53 (370)
186 PRK12490 6-phosphogluconate de 83.8 8 0.00017 41.6 10.6 31 21-52 2-32 (299)
187 PRK06841 short chain dehydroge 83.7 1.5 3.2E-05 44.8 4.6 34 17-51 13-47 (255)
188 PRK12921 2-dehydropantoate 2-r 83.6 1.3 2.9E-05 46.9 4.5 31 20-51 1-31 (305)
189 TIGR01832 kduD 2-deoxy-D-gluco 83.6 1.4 3E-05 44.8 4.5 34 17-51 3-37 (248)
190 PF01494 FAD_binding_3: FAD bi 83.6 1.3 2.8E-05 46.7 4.4 33 20-53 2-34 (356)
191 PRK06057 short chain dehydroge 83.5 1.4 3E-05 45.2 4.4 36 16-52 4-40 (255)
192 PRK00141 murD UDP-N-acetylmura 83.4 1.3 2.7E-05 51.0 4.4 40 12-52 8-47 (473)
193 PLN02545 3-hydroxybutyryl-CoA 83.3 1.5 3.4E-05 46.8 4.8 32 20-52 5-36 (295)
194 KOG2015|consensus 83.2 0.46 1E-05 52.1 0.8 23 139-161 75-97 (422)
195 PRK08217 fabG 3-ketoacyl-(acyl 83.2 1.6 3.5E-05 44.1 4.7 35 17-52 3-38 (253)
196 cd00300 LDH_like L-lactate deh 83.1 1.4 2.9E-05 47.8 4.3 31 22-52 1-32 (300)
197 PRK05479 ketol-acid reductoiso 83.1 1.6 3.4E-05 48.4 4.8 36 14-50 12-47 (330)
198 PRK09987 dTDP-4-dehydrorhamnos 83.0 7 0.00015 41.7 9.6 29 21-51 2-31 (299)
199 PRK14620 NAD(P)H-dependent gly 82.9 1.6 3.5E-05 47.3 4.8 31 21-52 2-32 (326)
200 PRK11154 fadJ multifunctional 82.9 1.7 3.6E-05 52.7 5.4 91 192-282 386-480 (708)
201 PRK07523 gluconate 5-dehydroge 82.9 1.7 3.6E-05 44.6 4.7 35 17-52 8-43 (255)
202 PLN02602 lactate dehydrogenase 82.8 1.6 3.4E-05 48.7 4.7 32 20-51 38-70 (350)
203 cd05298 GH4_GlvA_pagL_like Gly 82.6 9.2 0.0002 43.9 10.9 57 170-235 56-114 (437)
204 PRK00094 gpsA NAD(P)H-dependen 82.6 1.6 3.5E-05 46.7 4.6 32 20-52 2-33 (325)
205 TIGR01763 MalateDH_bact malate 82.4 1.7 3.8E-05 47.2 4.8 32 20-51 2-33 (305)
206 PF03446 NAD_binding_2: NAD bi 82.3 1.6 3.6E-05 42.6 4.2 32 20-52 2-33 (163)
207 PRK09310 aroDE bifunctional 3- 82.2 1.6 3.5E-05 50.4 4.8 33 17-50 330-362 (477)
208 cd01078 NAD_bind_H4MPT_DH NADP 82.2 1.8 4E-05 43.2 4.6 35 16-51 25-60 (194)
209 TIGR01181 dTDP_gluc_dehyt dTDP 82.2 9.5 0.00021 39.8 10.2 31 21-51 1-33 (317)
210 PRK13301 putative L-aspartate 82.1 3.3 7.1E-05 44.6 6.6 63 169-232 60-128 (267)
211 PRK07608 ubiquinone biosynthes 82.0 1.8 3.9E-05 47.3 4.8 34 20-54 6-39 (388)
212 PLN02166 dTDP-glucose 4,6-dehy 81.8 9.9 0.00021 43.4 10.8 34 18-52 119-153 (436)
213 PRK06194 hypothetical protein; 81.7 1.9 4.1E-05 45.0 4.6 35 17-52 4-39 (287)
214 PRK06487 glycerate dehydrogena 81.6 1.6 3.4E-05 47.8 4.2 35 16-51 145-179 (317)
215 PRK01747 mnmC bifunctional tRN 81.6 1.7 3.8E-05 51.8 4.9 33 20-53 261-293 (662)
216 TIGR03364 HpnW_proposed FAD de 81.5 2 4.4E-05 46.7 5.0 34 21-55 2-35 (365)
217 PRK07067 sorbitol dehydrogenas 81.4 1.9 4.1E-05 44.2 4.5 35 17-52 4-39 (257)
218 cd05296 GH4_P_beta_glucosidase 81.4 2.9 6.3E-05 47.6 6.3 58 169-235 56-115 (419)
219 PLN00106 malate dehydrogenase 81.3 2.1 4.6E-05 47.1 5.0 36 18-53 17-54 (323)
220 PLN02494 adenosylhomocysteinas 81.2 1.9 4.1E-05 49.8 4.8 37 17-54 252-288 (477)
221 TIGR02440 FadJ fatty oxidation 81.1 7.2 0.00016 47.3 9.8 92 192-283 381-476 (699)
222 PRK11101 glpA sn-glycerol-3-ph 81.1 1.9 4.1E-05 50.4 4.9 36 19-55 6-41 (546)
223 PRK06185 hypothetical protein; 81.1 2 4.3E-05 47.5 4.8 35 18-53 5-39 (407)
224 PRK07417 arogenate dehydrogena 81.1 2 4.3E-05 45.7 4.6 31 21-52 2-32 (279)
225 PRK00257 erythronate-4-phospha 81.1 1.8 3.9E-05 48.7 4.5 35 16-51 113-147 (381)
226 PRK06436 glycerate dehydrogena 81.0 1.8 3.9E-05 47.2 4.3 37 15-52 118-154 (303)
227 PRK12828 short chain dehydroge 81.0 1.7 3.7E-05 43.4 3.9 35 17-52 5-40 (239)
228 PTZ00075 Adenosylhomocysteinas 80.9 2 4.3E-05 49.7 4.8 38 16-54 251-288 (476)
229 PRK08945 putative oxoacyl-(acy 80.9 2.1 4.5E-05 43.7 4.5 37 15-52 8-45 (247)
230 TIGR01772 MDH_euk_gproteo mala 80.9 1.9 4.1E-05 47.2 4.5 33 21-53 1-35 (312)
231 PRK07774 short chain dehydroge 80.7 2.3 5E-05 43.2 4.8 35 17-52 4-39 (250)
232 TIGR02032 GG-red-SF geranylger 80.7 2.2 4.7E-05 44.1 4.7 33 21-54 2-34 (295)
233 PLN02657 3,8-divinyl protochlo 80.7 9.8 0.00021 42.6 10.1 34 18-52 59-93 (390)
234 PRK07060 short chain dehydroge 80.7 2.3 4.9E-05 43.0 4.7 34 17-51 7-41 (245)
235 TIGR00936 ahcY adenosylhomocys 80.7 2 4.2E-05 48.9 4.6 36 17-53 193-228 (406)
236 PRK15438 erythronate-4-phospha 80.7 1.9 4.1E-05 48.5 4.5 35 16-51 113-147 (378)
237 PRK08762 molybdopterin biosynt 80.6 1.8 3.9E-05 48.3 4.3 58 507-570 300-359 (376)
238 PRK07574 formate dehydrogenase 80.5 1.9 4.1E-05 48.7 4.3 35 16-51 189-223 (385)
239 PLN03096 glyceraldehyde-3-phos 80.5 2.7 5.9E-05 47.6 5.6 42 18-60 59-102 (395)
240 PRK02318 mannitol-1-phosphate 80.4 1.2 2.7E-05 49.7 2.9 46 20-66 1-47 (381)
241 PRK09126 hypothetical protein; 80.3 2 4.3E-05 47.1 4.4 36 18-54 2-37 (392)
242 cd00704 MDH Malate dehydrogena 80.3 2.1 4.6E-05 47.0 4.6 33 20-52 1-40 (323)
243 PRK14619 NAD(P)H-dependent gly 80.3 2.3 5E-05 45.9 4.8 33 19-52 4-36 (308)
244 TIGR03589 PseB UDP-N-acetylglu 80.2 2.3 4.9E-05 46.0 4.8 36 17-52 2-39 (324)
245 PRK03562 glutathione-regulated 80.1 2.8 6.1E-05 50.0 5.9 34 19-53 400-433 (621)
246 cd01339 LDH-like_MDH L-lactate 80.1 2 4.4E-05 46.2 4.3 31 22-52 1-31 (300)
247 PF01210 NAD_Gly3P_dh_N: NAD-d 80.1 2.1 4.6E-05 41.7 4.1 32 21-53 1-32 (157)
248 TIGR02028 ChlP geranylgeranyl 80.0 2 4.4E-05 47.9 4.5 31 21-52 2-32 (398)
249 PRK08773 2-octaprenyl-3-methyl 80.0 2 4.3E-05 47.4 4.3 34 19-53 6-39 (392)
250 PRK06500 short chain dehydroge 79.9 2.1 4.6E-05 43.3 4.2 35 17-52 4-39 (249)
251 PRK05875 short chain dehydroge 79.9 2.4 5.2E-05 43.9 4.7 35 17-52 5-40 (276)
252 PRK07494 2-octaprenyl-6-methox 79.9 2 4.4E-05 47.1 4.3 34 19-53 7-40 (388)
253 PRK08213 gluconate 5-dehydroge 79.8 2.3 4.9E-05 43.7 4.4 35 16-51 9-44 (259)
254 TIGR01292 TRX_reduct thioredox 79.8 2.5 5.4E-05 44.0 4.8 32 21-53 2-33 (300)
255 PRK12475 thiamine/molybdopteri 79.8 1.9 4.1E-05 47.7 4.1 40 135-174 55-96 (338)
256 PRK08605 D-lactate dehydrogena 79.8 2.3 4.9E-05 46.8 4.6 35 16-51 143-178 (332)
257 TIGR00137 gid_trmFO tRNA:m(5)U 79.7 2.3 4.9E-05 48.8 4.7 31 21-52 2-32 (433)
258 PRK13535 erythrose 4-phosphate 79.6 2.9 6.4E-05 46.3 5.4 30 20-49 2-32 (336)
259 TIGR00465 ilvC ketol-acid redu 79.6 1.9 4.1E-05 47.3 3.9 32 17-49 1-32 (314)
260 PRK07831 short chain dehydroge 79.5 2.2 4.8E-05 43.9 4.2 35 16-51 14-50 (262)
261 PRK07236 hypothetical protein; 79.3 2.3 5E-05 46.9 4.5 35 17-52 4-38 (386)
262 PRK05653 fabG 3-ketoacyl-(acyl 79.2 2.4 5.3E-05 42.4 4.4 34 18-52 4-38 (246)
263 PRK06198 short chain dehydroge 79.2 2.5 5.3E-05 43.3 4.5 36 17-52 4-40 (260)
264 PRK08265 short chain dehydroge 79.2 2.6 5.6E-05 43.6 4.7 35 17-52 4-39 (261)
265 PRK11728 hydroxyglutarate oxid 79.1 2.6 5.7E-05 46.6 5.0 33 20-53 3-37 (393)
266 PTZ00325 malate dehydrogenase; 79.0 2.2 4.8E-05 46.9 4.2 35 17-51 6-42 (321)
267 PRK14618 NAD(P)H-dependent gly 79.0 2.7 5.8E-05 45.7 4.8 32 20-52 5-36 (328)
268 TIGR02622 CDP_4_6_dhtase CDP-g 78.9 2.6 5.6E-05 45.7 4.8 35 17-52 2-37 (349)
269 KOG4169|consensus 78.9 1.7 3.8E-05 45.9 3.2 56 17-93 3-59 (261)
270 PF03807 F420_oxidored: NADP o 78.9 3.3 7.1E-05 36.4 4.5 23 21-43 1-23 (96)
271 PRK05867 short chain dehydroge 78.8 2.7 5.8E-05 43.1 4.6 34 17-51 7-41 (253)
272 PLN02968 Probable N-acetyl-gam 78.8 9.2 0.0002 43.1 9.1 35 193-229 102-136 (381)
273 PRK05714 2-octaprenyl-3-methyl 78.8 2.2 4.8E-05 47.2 4.2 34 20-54 3-36 (405)
274 PRK06753 hypothetical protein; 78.7 2.7 5.9E-05 45.7 4.8 33 20-53 1-33 (373)
275 PRK06940 short chain dehydroge 78.7 2.7 5.9E-05 44.1 4.7 32 19-52 2-33 (275)
276 PRK14192 bifunctional 5,10-met 78.7 2 4.3E-05 46.5 3.7 35 16-51 156-191 (283)
277 PRK07531 bifunctional 3-hydrox 78.7 2.5 5.4E-05 49.0 4.8 32 20-52 5-36 (495)
278 PRK06523 short chain dehydroge 78.7 2.3 4.9E-05 43.6 4.0 37 16-53 6-43 (260)
279 PRK08410 2-hydroxyacid dehydro 78.5 2.4 5.3E-05 46.2 4.4 36 15-51 141-176 (311)
280 cd01337 MDH_glyoxysomal_mitoch 78.5 2.7 5.7E-05 46.1 4.6 33 20-52 1-35 (310)
281 PRK07576 short chain dehydroge 78.5 2.4 5.3E-05 44.0 4.2 36 16-52 6-42 (264)
282 PRK12823 benD 1,6-dihydroxycyc 78.5 2.7 5.8E-05 43.1 4.5 35 16-51 5-40 (260)
283 TIGR01850 argC N-acetyl-gamma- 78.5 7.2 0.00016 43.2 8.1 35 192-227 65-99 (346)
284 PRK08507 prephenate dehydrogen 78.3 3 6.4E-05 44.2 4.8 31 21-51 2-33 (275)
285 PRK06932 glycerate dehydrogena 78.2 2.2 4.8E-05 46.6 4.0 35 15-50 143-177 (314)
286 PRK08277 D-mannonate oxidoredu 78.2 2.9 6.3E-05 43.5 4.7 35 17-52 8-43 (278)
287 cd01484 E1-2_like Ubiquitin ac 78.0 0.81 1.8E-05 48.1 0.5 38 132-169 27-64 (234)
288 PRK05225 ketol-acid reductoiso 78.0 1.4 3E-05 50.8 2.3 41 6-46 19-63 (487)
289 PRK06949 short chain dehydroge 77.9 3.1 6.7E-05 42.5 4.7 34 17-51 7-41 (258)
290 PRK12266 glpD glycerol-3-phosp 77.9 3.1 6.8E-05 48.2 5.3 42 20-62 7-48 (508)
291 PRK06847 hypothetical protein; 77.9 3 6.4E-05 45.4 4.8 34 19-53 4-37 (375)
292 PRK05717 oxidoreductase; Valid 77.8 3 6.5E-05 42.8 4.6 35 17-52 8-43 (255)
293 PLN02464 glycerol-3-phosphate 77.7 2.5 5.5E-05 50.4 4.5 41 20-61 72-112 (627)
294 PLN02253 xanthoxin dehydrogena 77.7 2.9 6.2E-05 43.6 4.5 35 16-51 15-50 (280)
295 PRK06184 hypothetical protein; 77.6 2.5 5.4E-05 48.5 4.4 33 19-52 3-35 (502)
296 PRK12829 short chain dehydroge 77.6 3 6.6E-05 42.6 4.6 38 13-51 5-43 (264)
297 PRK08163 salicylate hydroxylas 77.4 2.9 6.3E-05 45.9 4.7 34 19-53 4-37 (396)
298 PLN02350 phosphogluconate dehy 77.4 16 0.00035 42.6 10.8 32 20-52 7-38 (493)
299 PRK12862 malic enzyme; Reviewe 77.4 2.3 5E-05 51.9 4.1 40 15-54 189-230 (763)
300 PRK12939 short chain dehydroge 77.4 3.2 7E-05 41.9 4.6 34 17-51 5-39 (250)
301 TIGR01296 asd_B aspartate-semi 77.4 7.2 0.00016 43.1 7.7 34 193-227 59-92 (339)
302 cd01338 MDH_choloroplast_like 77.4 2.6 5.7E-05 46.3 4.2 32 20-51 3-41 (322)
303 PRK07364 2-octaprenyl-6-methox 77.3 2.9 6.4E-05 46.2 4.7 34 19-53 18-51 (415)
304 PRK05866 short chain dehydroge 77.3 3.2 6.9E-05 44.3 4.7 35 16-51 37-72 (293)
305 PLN03139 formate dehydrogenase 77.2 2.6 5.6E-05 47.6 4.2 35 16-51 196-230 (386)
306 PRK07680 late competence prote 77.1 3.3 7E-05 43.9 4.7 31 21-51 2-35 (273)
307 PRK07588 hypothetical protein; 77.1 3.2 6.9E-05 45.7 4.8 32 20-52 1-32 (391)
308 PRK07326 short chain dehydroge 77.0 3 6.5E-05 42.0 4.2 34 17-51 4-38 (237)
309 TIGR01988 Ubi-OHases Ubiquinon 76.9 3 6.5E-05 45.2 4.5 33 21-54 1-33 (385)
310 PF13738 Pyr_redox_3: Pyridine 76.9 3.2 6.9E-05 40.9 4.3 29 23-51 1-29 (203)
311 COG1250 FadB 3-hydroxyacyl-CoA 76.9 14 0.0003 40.7 9.5 32 20-52 4-35 (307)
312 PLN02256 arogenate dehydrogena 76.9 3 6.5E-05 45.4 4.5 43 8-51 22-67 (304)
313 PRK08017 oxidoreductase; Provi 76.8 3.7 8.1E-05 41.8 4.9 32 20-52 3-35 (256)
314 TIGR01759 MalateDH-SF1 malate 76.8 2.9 6.3E-05 46.0 4.4 32 20-51 4-42 (323)
315 PRK08850 2-octaprenyl-6-methox 76.7 2.5 5.4E-05 46.9 3.9 33 19-52 4-36 (405)
316 cd01488 Uba3_RUB Ubiquitin act 76.7 0.89 1.9E-05 49.4 0.3 37 131-167 26-62 (291)
317 PRK09754 phenylpropionate diox 76.7 2.9 6.3E-05 46.5 4.4 36 18-53 2-38 (396)
318 PRK08125 bifunctional UDP-gluc 76.7 11 0.00023 45.2 9.4 39 14-52 310-349 (660)
319 PRK09072 short chain dehydroge 76.7 3.5 7.5E-05 42.5 4.7 35 17-52 3-38 (263)
320 cd01336 MDH_cytoplasmic_cytoso 76.7 3.1 6.6E-05 45.8 4.5 33 20-52 3-42 (325)
321 PF00106 adh_short: short chai 76.6 3.4 7.3E-05 39.2 4.3 33 20-52 1-34 (167)
322 PRK05868 hypothetical protein; 76.5 3.3 7.2E-05 45.8 4.8 32 20-52 2-33 (372)
323 TIGR01984 UbiH 2-polyprenyl-6- 76.3 2.9 6.3E-05 45.6 4.2 32 21-53 1-33 (382)
324 PRK07856 short chain dehydroge 76.3 3.5 7.6E-05 42.2 4.6 36 17-53 4-40 (252)
325 TIGR01758 MDH_euk_cyt malate d 76.3 3 6.6E-05 45.8 4.3 31 21-51 1-38 (324)
326 PRK07666 fabG 3-ketoacyl-(acyl 76.1 3.2 7E-05 41.9 4.2 35 17-52 5-40 (239)
327 PRK07035 short chain dehydroge 76.1 3.8 8.2E-05 41.8 4.7 35 17-52 6-41 (252)
328 PRK12770 putative glutamate sy 76.1 3.6 7.7E-05 45.0 4.8 34 19-52 172-205 (352)
329 PF02629 CoA_binding: CoA bind 76.0 3.2 7E-05 37.2 3.7 34 19-52 3-37 (96)
330 TIGR01915 npdG NADPH-dependent 76.0 4 8.6E-05 41.9 4.9 29 21-50 2-31 (219)
331 PRK07232 bifunctional malic en 75.8 2.9 6.2E-05 51.0 4.3 40 15-54 181-222 (752)
332 TIGR01790 carotene-cycl lycope 75.7 3.1 6.7E-05 45.6 4.3 30 22-52 2-31 (388)
333 PRK08339 short chain dehydroge 75.6 3.7 8E-05 42.8 4.6 35 17-52 6-41 (263)
334 PRK07024 short chain dehydroge 75.6 4.1 8.9E-05 41.9 4.9 33 19-52 2-35 (257)
335 COG1063 Tdh Threonine dehydrog 75.6 3.6 7.7E-05 45.4 4.7 32 21-52 171-202 (350)
336 PRK07825 short chain dehydroge 75.6 3.5 7.6E-05 42.8 4.4 34 17-51 3-37 (273)
337 PRK12826 3-ketoacyl-(acyl-carr 75.4 3.6 7.7E-05 41.5 4.3 35 17-52 4-39 (251)
338 PRK11790 D-3-phosphoglycerate 75.4 3.2 6.8E-05 47.1 4.3 36 15-51 147-182 (409)
339 PRK13394 3-hydroxybutyrate deh 75.4 4 8.6E-05 41.7 4.7 34 17-51 5-39 (262)
340 PLN02240 UDP-glucose 4-epimera 75.4 3.4 7.5E-05 44.4 4.4 33 17-50 3-36 (352)
341 PRK13512 coenzyme A disulfide 75.4 4.1 9E-05 46.1 5.3 33 19-52 148-180 (438)
342 PLN02306 hydroxypyruvate reduc 75.4 3 6.5E-05 47.0 4.1 35 16-51 162-197 (386)
343 PRK05565 fabG 3-ketoacyl-(acyl 75.3 3.2 6.9E-05 41.8 3.9 32 17-49 3-35 (247)
344 PLN03129 NADP-dependent malic 75.3 3.4 7.3E-05 48.9 4.6 40 15-54 317-367 (581)
345 PRK09754 phenylpropionate diox 75.3 5.4 0.00012 44.4 6.1 32 19-51 144-175 (396)
346 PRK07333 2-octaprenyl-6-methox 75.3 3.1 6.7E-05 45.7 4.1 34 20-53 2-36 (403)
347 PF02056 Glyco_hydro_4: Family 75.2 11 0.00024 38.4 7.8 61 166-233 51-113 (183)
348 PRK08703 short chain dehydroge 75.2 3.8 8.3E-05 41.5 4.5 35 17-52 4-39 (239)
349 PRK08020 ubiF 2-octaprenyl-3-m 75.2 3.3 7.1E-05 45.5 4.3 33 20-53 6-38 (391)
350 PRK15076 alpha-galactosidase; 75.2 18 0.00039 41.5 10.3 45 191-235 71-118 (431)
351 TIGR01505 tartro_sem_red 2-hyd 75.1 3.5 7.5E-05 44.0 4.3 31 21-52 1-31 (291)
352 PRK06196 oxidoreductase; Provi 75.1 3.8 8.2E-05 43.9 4.6 35 17-52 24-59 (315)
353 PRK01710 murD UDP-N-acetylmura 75.1 4.4 9.6E-05 46.2 5.4 40 12-52 7-46 (458)
354 TIGR03325 BphB_TodD cis-2,3-di 75.0 4 8.7E-05 42.1 4.7 34 17-51 3-37 (262)
355 PRK08244 hypothetical protein; 75.0 3.5 7.7E-05 47.2 4.6 32 20-52 3-34 (493)
356 PRK06125 short chain dehydroge 74.9 4.1 8.9E-05 41.9 4.7 35 17-52 5-40 (259)
357 PRK14874 aspartate-semialdehyd 74.9 11 0.00023 41.5 8.2 34 193-227 61-94 (334)
358 cd05197 GH4_glycoside_hydrolas 74.9 25 0.00055 40.2 11.3 57 170-235 56-114 (425)
359 PRK06172 short chain dehydroge 74.8 4.1 8.8E-05 41.6 4.6 35 17-52 5-40 (253)
360 PRK06545 prephenate dehydrogen 74.7 3.5 7.5E-05 45.7 4.3 32 20-52 1-32 (359)
361 TIGR02023 BchP-ChlP geranylger 74.6 3.7 7.9E-05 45.5 4.5 31 21-52 2-32 (388)
362 PRK12861 malic enzyme; Reviewe 74.6 3 6.4E-05 50.9 4.0 40 15-54 185-226 (764)
363 TIGR03206 benzo_BadH 2-hydroxy 74.6 4 8.8E-05 41.3 4.5 35 17-52 1-36 (250)
364 PRK08040 putative semialdehyde 74.6 14 0.0003 41.1 8.9 34 193-227 64-97 (336)
365 PRK07251 pyridine nucleotide-d 74.5 4 8.6E-05 46.0 4.8 33 19-52 157-189 (438)
366 TIGR01757 Malate-DH_plant mala 74.4 4.4 9.6E-05 45.8 5.1 33 20-52 45-84 (387)
367 PRK14727 putative mercuric red 74.4 4.2 9.2E-05 46.6 5.1 33 19-52 188-220 (479)
368 TIGR00036 dapB dihydrodipicoli 74.3 13 0.00029 39.6 8.4 36 194-231 67-102 (266)
369 TIGR01202 bchC 2-desacetyl-2-h 74.3 4.4 9.5E-05 43.4 4.9 34 18-51 144-177 (308)
370 KOG1371|consensus 74.2 8.4 0.00018 42.7 6.9 37 20-64 3-40 (343)
371 TIGR03385 CoA_CoA_reduc CoA-di 74.2 5.1 0.00011 44.9 5.5 34 18-52 136-169 (427)
372 PRK08849 2-octaprenyl-3-methyl 74.2 3.5 7.6E-05 45.5 4.2 32 20-52 4-35 (384)
373 PRK07814 short chain dehydroge 74.2 4.4 9.4E-05 42.0 4.7 35 17-52 8-43 (263)
374 PRK06115 dihydrolipoamide dehy 74.2 4 8.7E-05 46.6 4.8 32 19-51 174-205 (466)
375 PRK09186 flagellin modificatio 74.1 4.3 9.3E-05 41.4 4.5 33 17-50 2-35 (256)
376 PRK07478 short chain dehydroge 74.1 4.3 9.4E-05 41.5 4.6 34 17-51 4-38 (254)
377 PRK13529 malate dehydrogenase; 74.0 3.8 8.3E-05 48.3 4.6 40 15-54 291-340 (563)
378 PRK12742 oxidoreductase; Provi 74.0 3.9 8.5E-05 41.1 4.2 32 17-49 4-36 (237)
379 PRK08013 oxidoreductase; Provi 74.0 3.6 7.8E-05 45.7 4.3 34 19-53 3-36 (400)
380 PRK08159 enoyl-(acyl carrier p 73.9 4 8.6E-05 43.0 4.3 35 15-50 6-43 (272)
381 PRK05732 2-octaprenyl-6-methox 73.9 3.4 7.3E-05 45.3 3.9 34 18-52 2-38 (395)
382 PRK07045 putative monooxygenas 73.9 4.1 8.9E-05 44.8 4.7 33 20-53 6-38 (388)
383 PRK07688 thiamine/molybdopteri 73.7 3.9 8.5E-05 45.3 4.4 44 131-174 51-96 (339)
384 PRK14694 putative mercuric red 73.7 4.6 9.9E-05 46.1 5.1 33 19-52 178-210 (468)
385 PLN02172 flavin-containing mon 73.6 3.9 8.4E-05 47.1 4.5 36 16-52 7-42 (461)
386 PRK05876 short chain dehydroge 73.6 4.5 9.7E-05 42.6 4.6 35 17-52 4-39 (275)
387 TIGR01316 gltA glutamate synth 73.6 4.2 9.2E-05 46.3 4.8 34 18-52 132-165 (449)
388 PTZ00431 pyrroline carboxylate 73.6 4.2 9.1E-05 42.9 4.4 34 18-51 2-38 (260)
389 PRK03659 glutathione-regulated 73.6 5.6 0.00012 47.3 6.0 34 19-53 400-433 (601)
390 PRK06617 2-octaprenyl-6-methox 73.5 3.8 8.2E-05 45.1 4.3 32 21-53 3-34 (374)
391 KOG1298|consensus 73.5 4 8.7E-05 46.2 4.3 43 21-64 47-89 (509)
392 PRK08085 gluconate 5-dehydroge 73.5 4.5 9.8E-05 41.4 4.6 34 17-51 7-41 (254)
393 PRK12771 putative glutamate sy 73.5 4 8.7E-05 47.8 4.7 34 18-52 136-169 (564)
394 PF13450 NAD_binding_8: NAD(P) 73.4 5.9 0.00013 33.5 4.5 28 24-52 1-28 (68)
395 PRK12770 putative glutamate sy 73.4 4.5 9.8E-05 44.2 4.8 33 19-52 18-50 (352)
396 PRK12748 3-ketoacyl-(acyl-carr 73.4 3.8 8.1E-05 42.1 4.0 35 17-52 3-40 (256)
397 PRK11559 garR tartronate semia 73.4 4.4 9.5E-05 43.2 4.6 32 20-52 3-34 (296)
398 PRK08132 FAD-dependent oxidore 73.4 4 8.7E-05 47.4 4.6 35 18-53 22-56 (547)
399 PRK15409 bifunctional glyoxyla 73.3 4 8.7E-05 44.8 4.4 34 16-50 142-176 (323)
400 PRK07533 enoyl-(acyl carrier p 73.3 4.5 9.7E-05 42.0 4.5 36 16-52 7-45 (258)
401 PRK06398 aldose dehydrogenase; 73.2 4.7 0.0001 41.7 4.7 36 17-53 4-40 (258)
402 PRK06124 gluconate 5-dehydroge 73.2 4.9 0.00011 41.1 4.7 35 17-52 9-44 (256)
403 PRK06475 salicylate hydroxylas 73.1 4.4 9.5E-05 45.0 4.6 33 19-52 2-34 (400)
404 PRK05993 short chain dehydroge 73.1 5.1 0.00011 41.9 4.9 33 19-52 4-37 (277)
405 PRK13581 D-3-phosphoglycerate 73.0 3.9 8.5E-05 47.8 4.4 35 16-51 137-171 (526)
406 PTZ00153 lipoamide dehydrogena 73.0 5.1 0.00011 48.3 5.5 32 19-51 312-343 (659)
407 PRK08243 4-hydroxybenzoate 3-m 73.0 4.7 0.0001 44.6 4.8 34 19-53 2-35 (392)
408 PRK05786 fabG 3-ketoacyl-(acyl 72.9 5 0.00011 40.4 4.7 34 17-51 3-37 (238)
409 PRK06113 7-alpha-hydroxysteroi 72.8 4.5 9.8E-05 41.5 4.4 34 16-50 8-42 (255)
410 COG0111 SerA Phosphoglycerate 72.7 4.1 8.9E-05 44.9 4.3 35 16-51 139-173 (324)
411 PRK12429 3-hydroxybutyrate deh 72.6 5.1 0.00011 40.7 4.7 34 17-51 2-36 (258)
412 PTZ00317 NADP-dependent malic 72.6 4.3 9.4E-05 47.8 4.6 40 15-54 293-342 (559)
413 COG2072 TrkA Predicted flavopr 72.6 3.4 7.4E-05 47.2 3.7 34 15-49 171-204 (443)
414 PRK07890 short chain dehydroge 72.5 5 0.00011 40.9 4.6 34 17-51 3-37 (258)
415 PLN02383 aspartate semialdehyd 72.5 15 0.00032 41.0 8.5 34 193-227 67-100 (344)
416 PLN02653 GDP-mannose 4,6-dehyd 72.5 4.2 9.1E-05 43.8 4.2 35 17-52 4-39 (340)
417 PRK08589 short chain dehydroge 72.5 4.5 9.7E-05 42.2 4.3 33 17-50 4-37 (272)
418 PRK12859 3-ketoacyl-(acyl-carr 72.5 3.9 8.6E-05 42.2 3.9 34 16-50 3-39 (256)
419 PRK07806 short chain dehydroge 72.5 4.4 9.5E-05 41.2 4.1 33 17-50 4-37 (248)
420 COG2085 Predicted dinucleotide 72.4 28 0.0006 36.4 9.9 73 164-237 115-189 (211)
421 PRK05442 malate dehydrogenase; 72.4 4.2 9.1E-05 44.8 4.2 32 20-51 5-43 (326)
422 PRK05257 malate:quinone oxidor 72.3 4.6 9.9E-05 46.9 4.7 35 19-53 5-40 (494)
423 PRK06138 short chain dehydroge 72.3 4.8 0.0001 40.8 4.4 34 17-51 3-37 (252)
424 PRK07679 pyrroline-5-carboxyla 72.2 4.8 0.0001 42.8 4.5 26 18-43 2-27 (279)
425 PRK07190 hypothetical protein; 72.1 4.5 9.8E-05 46.7 4.6 33 20-53 6-38 (487)
426 PRK00436 argC N-acetyl-gamma-g 72.1 15 0.00032 40.7 8.5 34 193-227 66-99 (343)
427 PRK13369 glycerol-3-phosphate 72.1 4.8 0.0001 46.5 4.8 35 20-55 7-41 (502)
428 PRK08415 enoyl-(acyl carrier p 72.1 4.8 0.0001 42.5 4.5 34 17-51 3-39 (274)
429 PRK12439 NAD(P)H-dependent gly 72.1 5 0.00011 44.2 4.7 28 20-49 8-35 (341)
430 TIGR03026 NDP-sugDHase nucleot 72.0 3.4 7.4E-05 46.5 3.5 41 21-62 2-42 (411)
431 PRK06200 2,3-dihydroxy-2,3-dih 72.0 4.8 0.0001 41.5 4.4 35 17-52 4-39 (263)
432 PRK12384 sorbitol-6-phosphate 72.0 5.8 0.00013 40.6 4.9 33 19-52 2-35 (259)
433 TIGR03329 Phn_aa_oxid putative 72.0 6 0.00013 45.0 5.5 44 19-62 24-68 (460)
434 PRK07984 enoyl-(acyl carrier p 71.8 4.2 9.2E-05 42.6 4.0 34 17-51 4-40 (262)
435 PLN02503 fatty acyl-CoA reduct 71.7 19 0.00042 43.1 9.7 41 10-50 110-153 (605)
436 PRK13748 putative mercuric red 71.7 5.2 0.00011 46.5 5.0 33 19-52 270-302 (561)
437 PRK07889 enoyl-(acyl carrier p 71.7 4.9 0.00011 41.7 4.3 34 17-51 5-41 (256)
438 TIGR00065 ftsZ cell division p 71.6 4.7 0.0001 44.9 4.4 54 13-66 11-68 (349)
439 PRK04965 NADH:flavorubredoxin 71.6 5.3 0.00012 44.0 4.9 33 18-51 140-172 (377)
440 PRK05086 malate dehydrogenase; 71.6 4.8 0.0001 44.0 4.4 33 20-52 1-36 (312)
441 PRK15461 NADH-dependent gamma- 71.6 5.1 0.00011 43.1 4.6 32 20-52 2-33 (296)
442 TIGR03452 mycothione_red mycot 71.5 5 0.00011 45.7 4.7 33 19-52 169-201 (452)
443 PRK12769 putative oxidoreducta 71.5 4.7 0.0001 48.2 4.7 34 18-52 326-359 (654)
444 PRK08226 short chain dehydroge 71.4 4.3 9.2E-05 41.7 3.8 35 16-51 3-38 (263)
445 PRK06183 mhpA 3-(3-hydroxyphen 71.4 5.1 0.00011 46.6 4.9 35 18-53 9-43 (538)
446 PRK06834 hypothetical protein; 71.4 4.5 9.9E-05 46.7 4.4 34 19-53 3-36 (488)
447 PRK07538 hypothetical protein; 71.3 5 0.00011 44.7 4.6 33 20-53 1-33 (413)
448 TIGR02279 PaaC-3OHAcCoADH 3-hy 71.3 4.9 0.00011 46.8 4.7 33 19-52 5-37 (503)
449 PRK08177 short chain dehydroge 71.2 5.9 0.00013 39.9 4.7 33 20-53 2-35 (225)
450 PRK07453 protochlorophyllide o 71.1 5.5 0.00012 42.7 4.7 33 18-51 5-38 (322)
451 PRK05557 fabG 3-ketoacyl-(acyl 71.1 5.1 0.00011 40.1 4.2 32 17-49 3-35 (248)
452 PRK11064 wecC UDP-N-acetyl-D-m 71.1 4.8 0.0001 45.7 4.4 33 20-53 4-36 (415)
453 PRK04176 ribulose-1,5-biphosph 70.9 7.3 0.00016 41.3 5.5 34 18-52 24-57 (257)
454 PLN02572 UDP-sulfoquinovose sy 70.9 4.6 0.0001 46.0 4.3 35 16-51 44-79 (442)
455 KOG0069|consensus 70.9 3.7 8E-05 45.6 3.4 30 13-42 156-185 (336)
456 PRK10538 malonic semialdehyde 70.9 6.3 0.00014 40.3 4.9 31 20-51 1-32 (248)
457 PRK06935 2-deoxy-D-gluconate 3 70.9 5.4 0.00012 41.0 4.4 36 16-52 12-48 (258)
458 PLN02985 squalene monooxygenas 70.8 5.2 0.00011 46.6 4.7 34 19-53 43-76 (514)
459 PRK06370 mercuric reductase; V 70.8 5.5 0.00012 45.3 4.9 33 19-52 171-203 (463)
460 PRK10157 putative oxidoreducta 70.8 5 0.00011 45.4 4.5 33 20-53 6-38 (428)
461 PRK08594 enoyl-(acyl carrier p 70.8 4.9 0.00011 41.8 4.2 33 17-50 5-40 (257)
462 PF05834 Lycopene_cycl: Lycope 70.7 9 0.00019 42.5 6.4 51 22-73 2-54 (374)
463 PRK07074 short chain dehydroge 70.6 6.4 0.00014 40.3 4.9 33 19-52 2-35 (257)
464 TIGR01350 lipoamide_DH dihydro 70.6 5.4 0.00012 45.1 4.7 33 19-52 170-202 (461)
465 PRK07577 short chain dehydroge 70.6 5.8 0.00013 39.8 4.5 35 18-53 2-37 (234)
466 PTZ00052 thioredoxin reductase 70.5 5.7 0.00012 46.0 4.9 32 19-51 182-213 (499)
467 PRK06126 hypothetical protein; 70.5 5.3 0.00011 46.4 4.7 33 19-52 7-39 (545)
468 TIGR01318 gltD_gamma_fam gluta 70.4 5.4 0.00012 45.8 4.7 34 18-52 140-173 (467)
469 cd05294 LDH-like_MDH_nadp A la 70.4 5.9 0.00013 43.2 4.8 33 20-52 1-35 (309)
470 PRK06181 short chain dehydroge 70.4 6.5 0.00014 40.4 4.9 31 20-51 2-33 (263)
471 TIGR01327 PGDH D-3-phosphoglyc 70.3 4.9 0.00011 47.0 4.4 35 16-51 135-169 (525)
472 PRK06467 dihydrolipoamide dehy 70.3 5.4 0.00012 45.7 4.7 31 20-51 175-205 (471)
473 PRK06567 putative bifunctional 70.3 5.6 0.00012 49.9 5.0 42 18-60 382-423 (1028)
474 PRK08278 short chain dehydroge 70.3 6 0.00013 41.4 4.6 35 17-52 4-39 (273)
475 PF00670 AdoHcyase_NAD: S-aden 70.2 5.9 0.00013 39.7 4.3 38 16-54 20-57 (162)
476 PRK12825 fabG 3-ketoacyl-(acyl 70.2 5.4 0.00012 39.9 4.2 28 18-45 5-33 (249)
477 PRK04207 glyceraldehyde-3-phos 70.2 21 0.00045 39.6 9.0 38 191-229 74-111 (341)
478 TIGR01421 gluta_reduc_1 glutat 70.2 5.6 0.00012 45.3 4.8 33 19-52 166-198 (450)
479 PLN00093 geranylgeranyl diphos 70.2 5.4 0.00012 45.7 4.6 32 20-52 40-71 (450)
480 PRK08628 short chain dehydroge 70.2 5.6 0.00012 40.7 4.4 34 17-51 5-39 (258)
481 PRK08268 3-hydroxy-acyl-CoA de 70.2 5.3 0.00012 46.6 4.6 32 20-52 8-39 (507)
482 PLN02688 pyrroline-5-carboxyla 70.1 6.2 0.00013 41.3 4.7 30 20-49 1-33 (266)
483 PRK12827 short chain dehydroge 69.9 5.5 0.00012 40.1 4.2 33 17-50 4-37 (249)
484 PRK08643 acetoin reductase; Va 69.9 6.7 0.00014 40.1 4.8 32 19-51 2-34 (256)
485 KOG0024|consensus 69.7 6.4 0.00014 43.6 4.8 35 18-52 169-203 (354)
486 COG1249 Lpd Pyruvate/2-oxoglut 69.7 6 0.00013 45.7 4.8 32 19-51 173-204 (454)
487 PRK13018 cell division protein 69.7 6.8 0.00015 44.2 5.1 74 17-90 26-114 (378)
488 PRK05249 soluble pyridine nucl 69.7 5.7 0.00012 44.9 4.7 33 19-52 175-207 (461)
489 PRK06114 short chain dehydroge 69.6 6.5 0.00014 40.4 4.7 35 17-52 6-41 (254)
490 PRK07677 short chain dehydroge 69.6 6.8 0.00015 40.1 4.8 32 20-52 2-34 (252)
491 PRK12936 3-ketoacyl-(acyl-carr 69.6 6.3 0.00014 39.6 4.5 33 17-50 4-37 (245)
492 PRK09564 coenzyme A disulfide 69.5 6.4 0.00014 44.2 5.0 34 20-53 1-35 (444)
493 PRK06505 enoyl-(acyl carrier p 69.5 5.7 0.00012 41.7 4.3 34 17-51 5-41 (271)
494 PRK06924 short chain dehydroge 69.4 6.7 0.00015 39.9 4.7 32 20-52 2-34 (251)
495 PRK06182 short chain dehydroge 69.4 6.3 0.00014 40.9 4.6 34 18-52 2-36 (273)
496 PRK12320 hypothetical protein; 69.3 22 0.00048 43.3 9.6 30 21-51 2-32 (699)
497 PRK06720 hypothetical protein; 69.3 6.7 0.00015 38.9 4.5 36 16-52 13-49 (169)
498 PRK00683 murD UDP-N-acetylmura 69.2 5.4 0.00012 44.9 4.3 34 18-52 2-35 (418)
499 TIGR00872 gnd_rel 6-phosphoglu 69.2 6.6 0.00014 42.3 4.8 31 21-52 2-32 (298)
500 TIGR01438 TGR thioredoxin and 69.1 6.2 0.00013 45.5 4.9 32 19-51 180-211 (484)
No 1
>KOG2013|consensus
Probab=100.00 E-value=1.8e-115 Score=940.33 Aligned_cols=496 Identities=48% Similarity=0.770 Sum_probs=419.2
Q ss_pred CHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHHHHhhhcCCCC
Q psy9783 10 EKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARNSALNFNPDA 89 (726)
Q Consensus 10 g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~~~l~~~np~~ 89 (726)
..+.++++..+|||||||||||||++|+|+++||++|+|||+|||++|||||||||+++|||++||.+|+
T Consensus 3 ~~~~~eai~~~riLvVGaGGIGCELLKnLal~gf~~IhiIDlDTIDlSNLNRQFLFrkkhVgqsKA~vA~---------- 72 (603)
T KOG2013|consen 3 PREKHEAIKSGRILVVGAGGIGCELLKNLALTGFEEIHIIDLDTIDLSNLNRQFLFRKKHVGQSKATVAA---------- 72 (603)
T ss_pred hHHHHHHhccCeEEEEecCcccHHHHHHHHHhcCCeeEEEeccceeccchhhhheeehhhcCchHHHHHH----------
Confidence 3567888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchhhhHHHHHHh
Q psy9783 90 NIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALN 169 (726)
Q Consensus 90 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~~~ak~~~~~ 169 (726)
+.++.
T Consensus 73 ---------------------------------------------------------------------------~~v~~ 77 (603)
T KOG2013|consen 73 ---------------------------------------------------------------------------KAVKQ 77 (603)
T ss_pred ---------------------------------------------------------------------------HHHHH
Confidence 67788
Q ss_pred hCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccceEEEEeCCCCcceecC
Q psy9783 170 FNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKKGETKCYECD 249 (726)
Q Consensus 170 ~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~i~p~~t~cy~C~ 249 (726)
|||++++++||++|++..|+..||++||+|+|||||.+||+|+|++|+.+++|||++|+.||.|||+++++|.|+||+|.
T Consensus 78 Fnpn~~l~~yhanI~e~~fnv~ff~qfdiV~NaLDNlaAR~yVNr~C~~a~vPLIesGt~Gf~GQv~~ii~GkTECyeC~ 157 (603)
T KOG2013|consen 78 FNPNIKLVPYHANIKEPKFNVEFFRQFDIVLNALDNLAARRYVNRMCLAASVPLIESGTGGFLGQVQVIIKGKTECYECI 157 (603)
T ss_pred hCCCCceEeccccccCcchHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhcCCceecCcccccceEEEEecCCcceeccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCccccCCCCCcchhhhhHh-HHhHHHHHHHhhhcchhHHHHHHHHhhhhhhhhhcccchHHHHHHHhhhcc
Q psy9783 250 PKPAAKTYPGCTIRNTPSEPIHCIVWAK-HLFNYLERLMLMKRCPLILKIQKLLERLSAMNVIRSQLPKLIQAVQLGILR 328 (726)
Q Consensus 250 ~~~~~~~~p~Cti~~~p~~~~h~i~~a~-~lf~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~ 328 (726)
+++.+++||+||||++|++|+|||+||| ++|++||+ +..++... .++ .
T Consensus 158 pK~~~kTypvCTIRstPS~~iHCIVWAK~~lF~qlF~-----------------~d~~~q~~----~~d----------~ 206 (603)
T KOG2013|consen 158 PKPVPKTYPVCTIRSTPSEPIHCIVWAKHYLFNQLFG-----------------EDDDDQYG----RHD----------N 206 (603)
T ss_pred CCCCCCcCCceEeecCCCCceeeeeehHhHHHHHHhc-----------------cccccccc----ccc----------c
Confidence 9999999999999999999999999999 69999999 33222111 111 2
Q ss_pred CCccccccccccccchhhhhHhhhhhhhcCCccccccccchhhcccchHHHHHHHhHHHHHHHHcCCcccCCCCCCCCcc
Q psy9783 329 LNPFTVLSGLNICSSDAGAKAAASEATANGDVVRTSTRAWASACGYDPRKLFAKFFDADIRYLISMSDLWKTRKAPQPLV 408 (726)
Q Consensus 329 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~w~~~c~~~~~~~f~~~F~~~I~~Ll~~~~~w~~~~~P~pl~ 408 (726)
.+|+..+ ..+.+.......+++..-.+.....|.....+.+.++|.++|..||+||+.|..+|+.|++|.||.
T Consensus 207 ~d~d~~e-------~~t~~~~~~~~et~d~~Er~~~i~~~~~~~~~~~~~i~~klF~~dI~yl~~~e~~wk~r~~p~pl~ 279 (603)
T KOG2013|consen 207 ADPDNCE-------DMTEEEAEAFRETEDLKERRESIVEIDKNLDFGPFKIFNKLFIYDIEYLLGMEALWKPRSRPVPLS 279 (603)
T ss_pred cCchhhh-------ccChhhhhhhccchHHHHHHHHHHHHhhccCCChhhhhhHHHHHHHHHHHhhhhhccCCCCCCCcc
Confidence 2332211 000011111111222222222223454455667899999999999999999999999999999999
Q ss_pred cCCCc-hhh---cCCCcccCCCCCCcccccChHHHHHHHHHHHHHHHHHhhhhhccCCCccccCCChhhHHHHHHHHHHh
Q psy9783 409 WDTLS-DAV---AGSSKETDGGGLKDQRVWSVAECARVFERSVRELKTKFDAAVEKDEHLVWDKDDKPAMDFVAACANIR 484 (726)
Q Consensus 409 ~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~f~~s~~~L~~~l~~~~~~~~~l~FDKDDd~hmDFVtAAANLR 484 (726)
|.... ... .+.....-..++.+|.+|++.++..+|..++..|.-+.++ ....-.+.|||||...|+||+||||+|
T Consensus 280 ~~~~i~~~~~t~ns~~q~~~~a~~~~~~v~~v~~~~~vf~~~i~~l~~~~~~-~~~h~~l~fdKdd~~~~~FVaaaaNiR 358 (603)
T KOG2013|consen 280 IAEVISTSLETINSIVQSITSAQLNDQNVWTVDEGAVVFRLSIQALDLRCPK-ESDHWYLIFDKDDASTMEFVAAAANIR 358 (603)
T ss_pred hhhccCCccccccchhhhccccccCCcceeeeccccHHHHHHHHHhcccCCc-cCCCceEEEcCCcHHHHHHHHHHhhhh
Confidence 98752 111 1111111224567999999999999999999888655544 112233999999999999999999999
Q ss_pred HHhcCCCCCCHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhcccchhhhccCCCCCCccccccccCCCCCCCC
Q psy9783 485 AHVFSIPEKSRFDIKSMAGNIIPAIATSNAIVAGLVVLHAIHVLQARFSSCQTVYLRKKPNHRDQMIVPEKYLTAPNPTC 564 (726)
Q Consensus 485 A~nY~Ip~~s~~~vK~IAGnIIPAIATTnAIVAGLvvlEl~KlL~~k~e~~rn~flnl~pn~~~~~~vP~~~~~ePnp~C 564 (726)
|+.|+||++|.|++|.|||||||||||||||||||+|+|++|+|+|++..|+++|+..+||.|++.++| ..+.||||+|
T Consensus 359 a~if~ipmkS~Fdik~mAgnIipaIAtTNAiIagliv~eaiKvl~~~~~~~~~~f~~~~~n~r~r~l~~-~~~~~PNp~C 437 (603)
T KOG2013|consen 359 AHIFGIPMKSLFDIKQMAGNIIPAIATTNAIIAGLIVTEAIKVLGGDFDDCNMIFLAKRPNPRKRVLLP-WALRPPNPNC 437 (603)
T ss_pred hhhhccchhhhhchHhHhcccchhhhhhhhHHHHHHHHHHHHHhccchhcceeeEEccCCCccceeecc-cccCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 8899999999
Q ss_pred CCCCCCCeEEEEEECCCCcHHHHHHHHHhcccCCccceeEEEecCCeEEEeccccccccccCCchhh-------hhhhcc
Q psy9783 565 PVCSPKPQRTIGLDVTKMTVAEFEEAVLKKTLNMSAMVDVMVEASGSVIISSEEGETEANNDKPLEH-------GLIISH 637 (726)
Q Consensus 565 ~vC~~~~~~tl~id~~~~TL~~lid~ilk~~l~m~~~pdV~~~~~G~ll~ss~e~e~~~nl~k~L~e-------lv~v~~ 637 (726)
+||+..+ .+++++.+++||..|+|.|+|.+|+| . |+|++... .| ++++ ++++|++|+|+| +|.+.|
T Consensus 438 ~vCs~~~-~~l~ln~~~~~~~~L~D~ivk~r~~~-~-pdvsll~~-~L-i~~~--d~e~n~~k~lsel~i~ngsli~~~~ 510 (603)
T KOG2013|consen 438 PVCSEVP-LVLELNTRKSTLRDLVDKIVKTRLGY-L-PDVSLLDD-DL-IDDM--DFEDNLDKTLSELGILNGSLINVKD 510 (603)
T ss_pred ccccccc-eEEEeccccchHHHHHHHHHHHHhcc-C-cccchhhh-hh-cccc--cchhhhhhhHHhhCCCCCceEeeec
Confidence 9999887 88999999999999999999999999 6 99988753 33 3333 899999999999 566666
No 2
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=100.00 E-value=1e-102 Score=931.33 Aligned_cols=519 Identities=27% Similarity=0.408 Sum_probs=412.8
Q ss_pred CcccccccCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCC-----CeEEEEeCCccCccCCCcCCCCCCCccChhHHH
Q psy9783 2 ATKIPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGF-----SNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQ 76 (726)
Q Consensus 2 ~~~~~~~~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv-----~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~ 76 (726)
+.||+++||.++|++|++++|+||||||||||++|+||++|| |+|+|+|+|+||.|||||||||+.+|||++|++
T Consensus 402 Ydrqi~l~G~~~Q~kL~~~kVlvvGaGGlG~e~lknLal~Gv~~~~~G~i~IvD~D~Ve~SNLnRQfLf~~~dIGk~Ka~ 481 (1008)
T TIGR01408 402 YDAQIAVFGDTFQQKLQNLNIFLVGCGAIGCEMLKNFALMGVGTGKKGMITVTDPDLIEKSNLNRQFLFRPHHIGKPKSY 481 (1008)
T ss_pred hHHHHHHcCHHHHHHHhhCcEEEECCChHHHHHHHHHHHhCCCcCCCCeEEEECCCEecccccCcCcCCChhHcCcHHHH
Confidence 568999999999999999999999999999999999999999 899999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccC
Q psy9783 77 VARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVG 156 (726)
Q Consensus 77 va~~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg 156 (726)
+|+++++++||+++
T Consensus 482 vaa~~l~~~Np~v~------------------------------------------------------------------ 495 (1008)
T TIGR01408 482 TAADATLKINPQIK------------------------------------------------------------------ 495 (1008)
T ss_pred HHHHHHHHHCCCCE------------------------------------------------------------------
Confidence 99966666665554
Q ss_pred cchhhhHHHHHHhhCCCCeEEEEeccccc---ccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccc
Q psy9783 157 KSKAQVARNSALNFNPDANIVAHHTSIIS---ADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEG 233 (726)
Q Consensus 157 ~sk~~~ak~~~~~~np~~~i~~~~~~i~~---~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G 233 (726)
|+++..++.. ..++.+||.++|+|++|+||+++|.++|++|+.+++|+|++|+.|++|
T Consensus 496 -------------------I~~~~~~v~~~~e~i~~~~f~~~~dvVi~alDn~~aR~~vn~~c~~~~iPli~~gt~G~~G 556 (1008)
T TIGR01408 496 -------------------IDAHQNRVGPETETIFNDEFYEKLDVVINALDNVEARRYVDSRCLAFLKPLLESGTLGTKG 556 (1008)
T ss_pred -------------------EEEEEeecChhhhhhhhHHHhhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeccCcee
Confidence 4444444422 235568999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCCCcceecCCCCCCCCCCCccccCCCCCcchhhhhHhHHhHHHHHHHhhhcchhHHHHHHHHhhhhhhhhhcc
Q psy9783 234 QVELIKKGETKCYECDPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNYLERLMLMKRCPLILKIQKLLERLSAMNVIRS 313 (726)
Q Consensus 234 ~v~~i~p~~t~cy~C~~~~~~~~~p~Cti~~~p~~~~h~i~~a~~lf~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (726)
+++++.|+.|+||.|.++++++++|.|||+++|+.|+|||+|||++|+.+|+..+. ..++|++..
T Consensus 557 ~v~v~ip~~te~y~~~~d~~~~~~P~Ctl~~~P~~~~h~i~wa~~~f~~~F~~~~~-------~~~~~~~~~-------- 621 (1008)
T TIGR01408 557 NTQVVVPHLTESYGSSRDPPEKEIPFCTLKSFPAAIEHTIQWARDKFEGLFSHKPS-------LVNKYLSSP-------- 621 (1008)
T ss_pred eEEEEeCCCcCCCCCCCCCCCCCCCcccccCCCCCchHHHHHHHHHHHHHHHhhHH-------HHHHHhhCh--------
Confidence 99999999999999999999999999999999999999999999999999995442 233333211
Q ss_pred cchHHHHHHHhhhccCCccccccccccccchhhhhHhhhhhhhcCCccccccccchhhcccchHHHHHHHhHHHHHHHHc
Q psy9783 314 QLPKLIQAVQLGILRLNPFTVLSGLNICSSDAGAKAAASEATANGDVVRTSTRAWASACGYDPRKLFAKFFDADIRYLIS 393 (726)
Q Consensus 314 ~~~~~~~~v~~G~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~w~~~c~~~~~~~f~~~F~~~I~~Ll~ 393 (726)
.++.+.+. ..++... .+.+..- ...+....+..| ++|+.||+.+|+++|+++|++||+
T Consensus 622 --~~~~~~~~----~~~~~~~------------~~~l~~i---~~~l~~~~p~~~-~~cv~~a~~~f~~~F~~~I~qLl~ 679 (1008)
T TIGR01408 622 --SSAEEVLQ----KIQSGHS------------REGLEQI---IKLLSKEKPRNF-SQCVEWARLKFEKYFNNKALQLLH 679 (1008)
T ss_pred --HHHHHHHH----hcCchhH------------HHHHHHH---HHHHhhcCCCCH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01111111 0000000 0001000 001111223456 589999999999999999999998
Q ss_pred C----------CcccCC-CCCCCCcccCCCchhh-----cCCCcccCCCC---------------------------CCc
Q psy9783 394 M----------SDLWKT-RKAPQPLVWDTLSDAV-----AGSSKETDGGG---------------------------LKD 430 (726)
Q Consensus 394 ~----------~~~w~~-~~~P~pl~~~~~~~~~-----~~~~~~~~~~~---------------------------~~~ 430 (726)
+ .+||++ +|+|+||+||..+..+ +.+...+..+| ..+
T Consensus 680 ~fP~d~~~~~G~~fWs~~kr~P~pl~Fd~~~~~h~~Fi~aaanL~A~~ygi~~~~~~~~~~~~~~~~~~~~vp~f~p~~~ 759 (1008)
T TIGR01408 680 CFPLDIRTSTGSPFWSSPKRPPSPLKFDLNEPLHLSFIQAAAKLYATVYGIPFAEEDLSADALLNILSEVKIPEFKPRSN 759 (1008)
T ss_pred hCCccccccCCCccccCCCCCCCceeeCCCCHHHHHHHHHHHHHHHHHhCCCCccccchHHHHHHHHhcCCCCCCCCCcC
Confidence 7 899998 7999999999874321 11100000011 122
Q ss_pred ccccChH------HHHHHHHHHHHHHHHHhhhhh-----ccCCCccccCCChh--hHHHHHHHHHHhHHhcCCCCCCHHH
Q psy9783 431 QRVWSVA------ECARVFERSVRELKTKFDAAV-----EKDEHLVWDKDDKP--AMDFVAACANIRAHVFSIPEKSRFD 497 (726)
Q Consensus 431 ~~~~~~~------~~~~~f~~s~~~L~~~l~~~~-----~~~~~l~FDKDDd~--hmDFVtAAANLRA~nY~Ip~~s~~~ 497 (726)
+++|+-+ ++...+.+.+++|.+++.... ....|++||||||. |||||+|||||||+||+||++|||+
T Consensus 760 ~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~p~~FeKDDd~n~HidFI~AasNLRA~nY~I~~~d~~~ 839 (1008)
T TIGR01408 760 KKIQTDETARKPDTAPEDDRNAIFQLEKAILSNEATKSDFRMAPLSFEKDDDHNGHIDFITAASNLRAKNYSIEPADRFK 839 (1008)
T ss_pred ceeecChhhhcccccccchHHHHHHHHHHhhccccccCCCCCCceeeccCCCcchHHHHHHHHHhhHHHhcCCCcccHHH
Confidence 3444421 111134567777877776532 23678999999985 9999999999999999999999999
Q ss_pred HHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhh--hcccchhhhccCCCCCCccccccccCCCCCCCCCCCCCCCeE-E
Q psy9783 498 IKSMAGNIIPAIATSNAIVAGLVVLHAIHVLQAR--FSSCQTVYLRKKPNHRDQMIVPEKYLTAPNPTCPVCSPKPQR-T 574 (726)
Q Consensus 498 vK~IAGnIIPAIATTnAIVAGLvvlEl~KlL~~k--~e~~rn~flnl~pn~~~~~~vP~~~~~ePnp~C~vC~~~~~~-t 574 (726)
+|+||||||||||||||+||||+|+|+||+++|+ ++.|||+|+|++ +|++.++||.|.|.+|.....| |
T Consensus 840 ~K~iAG~IIPAiATTTA~vaGLv~lEl~Kv~~~~~~i~~~kn~f~nla--------lp~~~~seP~~~~~~~~~~~~~~t 911 (1008)
T TIGR01408 840 TKFIAGKIIPAIATSTATVSGLVCLELIKVTDGGYKFEVYKNCFLNLA--------IPLFVFTEPTEVRKTKIRNGISFT 911 (1008)
T ss_pred HHHHhccccchhhhHHHHHHHHHHHHHHHHHhccccHHHHhHHHHhhc--------cccccccCCCCCCceeecCceecc
Confidence 9999999999999999999999999999999984 799999999986 7889999999999999765566 5
Q ss_pred E--EEECC-CCcHHHHHHHHHhcccCCccceeEEEecCC-eEEEeccccccccccCCchhhhhhhcccC---CCCCCCeE
Q psy9783 575 I--GLDVT-KMTVAEFEEAVLKKTLNMSAMVDVMVEASG-SVIISSEEGETEANNDKPLEHGLIISHRV---SARDGPEF 647 (726)
Q Consensus 575 l--~id~~-~~TL~~lid~ilk~~l~m~~~pdV~~~~~G-~ll~ss~e~e~~~nl~k~L~elv~v~~~~---~~~~~~~f 647 (726)
+ ++++. ++||++|+++|. +++| .+|++.+.| ++||++++...+++|+++|+|++.-+.+. +.++++.|
T Consensus 912 ~WDr~~i~~~~Tl~~~i~~~~-~~~~----~~v~~is~g~~~lY~~~~~~~~erl~~~l~el~~~~~k~~~~~~~~~l~~ 986 (1008)
T TIGR01408 912 IWDRWTLHGDFTLLEFINAVK-EKYG----LEPTMVSQGVKLLYVPVMPGHAERLKLKMHKLVKPTTKKKLPPYRVHLTV 986 (1008)
T ss_pred ceEEEEecCCCcHHHHHHHHH-HHhC----CeeEEEEcCceEEEeccchhhHHhcCCCHHHHHHHhccCCCCCCceEEEE
Confidence 5 66665 899999999994 5567 466888888 89999987777899999999999988876 45578999
Q ss_pred EEEecCCC
Q psy9783 648 EILDQKDL 655 (726)
Q Consensus 648 eV~~~~~~ 655 (726)
||+|+++.
T Consensus 987 ~~~~~d~~ 994 (1008)
T TIGR01408 987 SFACDDDG 994 (1008)
T ss_pred EEEeecCC
Confidence 99998543
No 3
>KOG2012|consensus
Probab=100.00 E-value=5.4e-99 Score=849.02 Aligned_cols=515 Identities=29% Similarity=0.442 Sum_probs=413.9
Q ss_pred cccccccCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCC-----eEEEEeCCccCccCCCcCCCCCCCccChhHHHH
Q psy9783 3 TKIPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFS-----NIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQV 77 (726)
Q Consensus 3 ~~~~~~~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~-----~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~v 77 (726)
--|+++||...|+||.+.++++||||+||||++||++++|+| .|+|+|+|.||.||||||||||..|||++|+++
T Consensus 414 D~qiavfG~~fqeKL~~~~~FlVGaGAIGCE~LKN~am~Gvg~g~~g~ItVTDmD~IEkSNLnRQFLFR~~dVgk~KSe~ 493 (1013)
T KOG2012|consen 414 DGQIAVFGAKFQEKLADQKVFLVGAGAIGCELLKNFALMGVGCGNSGKITVTDMDHIEKSNLNRQFLFRPWDVGKPKSEV 493 (1013)
T ss_pred ccchhhhchHHHHHHhhCcEEEEccchhhHHHHHhhhheeeccCCCCceEEeccchhhhccccceeeccccccCchHHHH
Confidence 458999999999999999999999999999999999999995 799999999999999999999999999999999
Q ss_pred HHHHhhhcCCCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCc
Q psy9783 78 ARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGK 157 (726)
Q Consensus 78 a~~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~ 157 (726)
|+.
T Consensus 494 AA~----------------------------------------------------------------------------- 496 (1013)
T KOG2012|consen 494 AAA----------------------------------------------------------------------------- 496 (1013)
T ss_pred HHH-----------------------------------------------------------------------------
Confidence 994
Q ss_pred chhhhHHHHHHhhCCCCeEEEEeccc---ccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccce
Q psy9783 158 SKAQVARNSALNFNPDANIVAHHTSI---ISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQ 234 (726)
Q Consensus 158 sk~~~ak~~~~~~np~~~i~~~~~~i---~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~ 234 (726)
++..+||+++|.++..++ ++..|+++||.+.|+|.+||||+.||+|+++.|+.+.+||+++||.|++|+
T Consensus 497 --------A~~~mNp~l~I~a~~~rvgpeTE~If~D~Ff~~ld~VanALDNVdAR~YvD~RCv~~~kPLLESGTlGTKGn 568 (1013)
T KOG2012|consen 497 --------AARGMNPDLNIIALQNRVGPETEHIFNDEFFENLDGVANALDNVDARRYVDRRCVYYRKPLLESGTLGTKGN 568 (1013)
T ss_pred --------HHHhcCCCceeeehhhccCcccccccchhHHhhhHHHHHhhcchhhhhhhhhhhhhhccchhhccCcCCccc
Confidence 445555556666666666 567899999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCcceecCCCCCCCCCCCccccCCCCCcchhhhhHhHHhHHHHHHHhhhcchhHHHHHHHHhhhhhhhhhccc
Q psy9783 235 VELIKKGETKCYECDPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNYLERLMLMKRCPLILKIQKLLERLSAMNVIRSQ 314 (726)
Q Consensus 235 v~~i~p~~t~cy~C~~~~~~~~~p~Cti~~~p~~~~h~i~~a~~lf~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (726)
+++++|+.|+.|....+|+++++|.||++|||..++|||+|||+.|+.+|.. .++..+.|+.+..
T Consensus 569 tQVvvPhlTEsY~SS~DPPEksiP~CTlknFPn~IeHTiqWAR~eFEg~F~~-------~~e~vN~yls~p~-------- 633 (1013)
T KOG2012|consen 569 TQVVVPHLTESYGSSRDPPEKSIPVCTLKSFPNAIEHTIQWARDEFEGLFKQ-------SAENVNKYLSDPV-------- 633 (1013)
T ss_pred eeEEeccccccccccCCCcccCCceeeeccCchHHHHHHHHHHHHHHHHhhC-------CHHHHHHHhcCch--------
Confidence 9999999999999999999999999999999999999999999999999993 3344555554322
Q ss_pred chHHHHHHHhhhccCCccccccccccccchhhhhHhhhhhhhcCCccccccccchhhcccchHHHHHHHhHHHHHHHHcC
Q psy9783 315 LPKLIQAVQLGILRLNPFTVLSGLNICSSDAGAKAAASEATANGDVVRTSTRAWASACGYDPRKLFAKFFDADIRYLISM 394 (726)
Q Consensus 315 ~~~~~~~v~~G~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~w~~~c~~~~~~~f~~~F~~~I~~Ll~~ 394 (726)
+.+....- ..+|... ..+ ....+.+. ..++.| .+|+.||+..|+++|++.|.+||..
T Consensus 634 ---f~e~sl~~--~~~~~~~-------------~~l---~~v~~~l~-~rp~~~-~dCv~warl~f~~~f~~~ikqLl~~ 690 (1013)
T KOG2012|consen 634 ---FYETSLKL--IGEPQSL-------------ETL---ERVVDCLS-ERPQNW-QDCVEWARLHFEKYFHNRIKQLLHN 690 (1013)
T ss_pred ---HHHHHHhh--ccCcchh-------------HHH---HHHHHHhh-cCCccH-HHHHHHHHHHHHHHhhHHHHHhhcC
Confidence 11111000 1111110 000 00111122 344667 5999999999999999999999973
Q ss_pred ----------CcccCCC-CCCCCcccCCCch-hh----cCCCcccCCCCCCcccccC-----------------------
Q psy9783 395 ----------SDLWKTR-KAPQPLVWDTLSD-AV----AGSSKETDGGGLKDQRVWS----------------------- 435 (726)
Q Consensus 395 ----------~~~w~~~-~~P~pl~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~----------------------- 435 (726)
.+||+++ |+|+||+||..+. +. +++...+..+|++..+-|.
T Consensus 691 FP~d~~t~~G~pFWs~pKr~P~pl~Fd~n~~~hl~fv~Aaa~l~a~~~gi~~~~d~~~~~~~~~~v~~p~f~P~~~~~i~ 770 (1013)
T KOG2012|consen 691 FPPDAKTSDGAPFWSGPKRCPRPLEFDVNDPLHLNFVQAAANLRAEVYGIPGSQDREALAELLERVIVPEFEPKQKVKIV 770 (1013)
T ss_pred CCcccccCCCCcCCCCCCCCCCceeecCCCchhHHHHHHHHHHHHHhcCCCcccCHHHhhhhHhhcCCCccccccCCeec
Confidence 8999995 9999999998753 11 1111111112221100000
Q ss_pred hHH------HHHHH-HHHHHHHHHHhhhhh----ccCCCccccCCCh--hhHHHHHHHHHHhHHhcCCCCCCHHHHHHhh
Q psy9783 436 VAE------CARVF-ERSVRELKTKFDAAV----EKDEHLVWDKDDK--PAMDFVAACANIRAHVFSIPEKSRFDIKSMA 502 (726)
Q Consensus 436 ~~~------~~~~f-~~s~~~L~~~l~~~~----~~~~~l~FDKDDd--~hmDFVtAAANLRA~nY~Ip~~s~~~vK~IA 502 (726)
+.+ ...+- ..++.+|...+.... ....|+.|||||| +|||||+|||||||.||+||+++|+++|+||
T Consensus 771 ~~~~~~~~~~~s~d~~~~i~~l~~~l~~~~~~~~~~~~p~~FEKDDDsN~H~dfi~aasnlRA~nY~I~~adr~k~K~Ia 850 (1013)
T KOG2012|consen 771 VEEAELAASSASVDDSAAIDQLNKALPSPSVLPSFKMKPLDFEKDDDSNFHMDFITAASNLRAQNYSIPPADRLKTKRIA 850 (1013)
T ss_pred ccccccccccccCCchHHHHHHhhcccccccCCCCceeeeeeccccccccchHHHHHHhhhhhhccCCCccchhhhheee
Confidence 000 00111 247778887776531 1456899999998 5999999999999999999999999999999
Q ss_pred cCCCcchhHHHHHHHHHHHHHHHHHHhhh--hcccchhhhccCCCCCCccccccccCCCCCCCCCCCCC-CCeEEE--EE
Q psy9783 503 GNIIPAIATSNAIVAGLVVLHAIHVLQAR--FSSCQTVYLRKKPNHRDQMIVPEKYLTAPNPTCPVCSP-KPQRTI--GL 577 (726)
Q Consensus 503 GnIIPAIATTnAIVAGLvvlEl~KlL~~k--~e~~rn~flnl~pn~~~~~~vP~~~~~ePnp~C~vC~~-~~~~tl--~i 577 (726)
|+||||||||||+|+||+|+|+||++.|+ +++|||+|+||+ +|++.+++|-|.|.+-.. +.+||+ |+
T Consensus 851 GkIIPAIATtTa~v~Glv~LElyKv~~G~~~~e~~Kn~flnLA--------lp~f~~~ep~~~pk~~~~~~~~~tlWdR~ 922 (1013)
T KOG2012|consen 851 GKIIPAIATTTAAVSGLVCLELYKVVDGKRPVEAYKNTFLNLA--------LPFFSFAEPLAAPKVQYHNDLSWTLWDRW 922 (1013)
T ss_pred eeEEEEEeehhHHHHHHHHhhhhhhccCCCchHHhhhhhhccc--------ccceeecccCCCcceeeecccceeeeEEE
Confidence 99999999999999999999999999994 899999999997 788999999998765543 336777 88
Q ss_pred ECC-CCcHHHHHHHHHhcccCCccceeEEEecCC-eEEEeccccccccccCCchhhhhhhcccC---CCCCCCeEEEEec
Q psy9783 578 DVT-KMTVAEFEEAVLKKTLNMSAMVDVMVEASG-SVIISSEEGETEANNDKPLEHGLIISHRV---SARDGPEFEILDQ 652 (726)
Q Consensus 578 d~~-~~TL~~lid~ilk~~l~m~~~pdV~~~~~G-~ll~ss~e~e~~~nl~k~L~elv~v~~~~---~~~~~~~feV~~~ 652 (726)
+++ ++||++|++++++ +.| ..|+|.+.| +++|++++....++|++++.|++..+.+. +.+..+.+||+|+
T Consensus 923 ~v~g~~tL~~~L~~~~~-~~g----l~i~mls~G~~lly~~~~~k~~erl~~~v~elv~~~~k~~~~~~~~~lvle~~~~ 997 (1013)
T KOG2012|consen 923 EVKGEPTLREFLDHLEE-QHG----LEITMLSQGVSLLYASFMPKHAERLPLRVTELVRDVTKKKLPPHVRHLVLEVACE 997 (1013)
T ss_pred EecCCCCHHHHHHHHhh-hcC----ceEEEEeccceeehhhhhhHHHHhcCCcHHHHHHHHhcccCCCcceEEEEEEecC
Confidence 887 5999999999964 556 356888888 89999999999999999999999977765 4566789999999
Q ss_pred C
Q psy9783 653 K 653 (726)
Q Consensus 653 ~ 653 (726)
+
T Consensus 998 d 998 (1013)
T KOG2012|consen 998 D 998 (1013)
T ss_pred C
Confidence 5
No 4
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=100.00 E-value=1.9e-92 Score=778.32 Aligned_cols=398 Identities=35% Similarity=0.556 Sum_probs=338.0
Q ss_pred cEEEEcCchHHHHHHHHHHHhCC-----CeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHHHHhhhcCCCCceeeee
Q psy9783 21 KVLVVGAGGIGCELLKNLVLSGF-----SNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIYYQV 95 (726)
Q Consensus 21 kVlvVGaGgiGceiaknLal~Gv-----~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~~~l~~~np~~~v~~~~ 95 (726)
||+||||||+|||++|+||++|| |+|+|+|+|+||.|||+|||||+++|||++||++|+++++++||+++|.
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~--- 77 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKIT--- 77 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEE---
Confidence 69999999999999999999999 9999999999999999999999999999999999997666666665544
Q ss_pred ccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchhhhHHHHHHhhCCCCe
Q psy9783 96 DFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDAN 175 (726)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~~~ak~~~~~~np~~~ 175 (726)
T Consensus 78 -------------------------------------------------------------------------------- 77 (435)
T cd01490 78 -------------------------------------------------------------------------------- 77 (435)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEecccc---cccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccceEEEEeCCCCcceecCCCC
Q psy9783 176 IVAHHTSII---SADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKKGETKCYECDPKP 252 (726)
Q Consensus 176 i~~~~~~i~---~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~i~p~~t~cy~C~~~~ 252 (726)
++..++. +..++.+||+++|+|++|+||+++|.++|++|+.+++|+|++|+.|+.|+++++.|+.|+||+|..++
T Consensus 78 --a~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~vn~~C~~~~iPli~~gt~G~~G~v~v~iP~~te~y~~~~~p 155 (435)
T cd01490 78 --ALQNRVGPETEHIFNDEFWEKLDGVANALDNVDARMYVDRRCVYYRKPLLESGTLGTKGNTQVVIPHLTESYSSSRDP 155 (435)
T ss_pred --EEecccChhhhhhhhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEecccceeEEEEEeCCCCCCccCCCCC
Confidence 4444432 12355789999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCCCCCCccccCCCCCcchhhhhHhHHhHHHHHHHhhhcchhHHHHHHHHhhhhhhhhhcccchHHHHHHHhhhccCCcc
Q psy9783 253 AAKTYPGCTIRNTPSEPIHCIVWAKHLFNYLERLMLMKRCPLILKIQKLLERLSAMNVIRSQLPKLIQAVQLGILRLNPF 332 (726)
Q Consensus 253 ~~~~~p~Cti~~~p~~~~h~i~~a~~lf~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~~p~ 332 (726)
+++++|.||++++|+.|+|||+|||++|+.+|+... . ++ +
T Consensus 156 ~~~~~P~Ctl~~~P~~~eHcI~wA~~~F~~lF~~~~-----------------~--~~-------------------~-- 195 (435)
T cd01490 156 PEKSIPLCTLKNFPNAIEHTIQWARDEFEGLFKQPP-----------------E--NV-------------------N-- 195 (435)
T ss_pred CCCCCCCccccCCCCCchHHHHHHHHHHHHHhccch-----------------H--HH-------------------H--
Confidence 889999999999999999999999999999999321 1 01 0
Q ss_pred ccccccccccchhhhhHhhhhhhhcCCccccccccchhhcccchHHHHHHHhHHHHHHHHcC----------CcccCC-C
Q psy9783 333 TVLSGLNICSSDAGAKAAASEATANGDVVRTSTRAWASACGYDPRKLFAKFFDADIRYLISM----------SDLWKT-R 401 (726)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~w~~~c~~~~~~~f~~~F~~~I~~Ll~~----------~~~w~~-~ 401 (726)
.. +.++|+.||+.+|+++|+++|++||++ .+||++ +
T Consensus 196 ---------------~~------------------~~~~c~~~a~~~f~~~F~~~I~~ll~~~p~d~~~~~g~~fw~~~k 242 (435)
T cd01490 196 ---------------QY------------------LFEDCVRWARLLFEKYFNNNIKQLLHNFPPDAVTSDGAPFWSGPK 242 (435)
T ss_pred ---------------Hh------------------hHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccccccccCCC
Confidence 00 025899999999999999999999985 899998 6
Q ss_pred CCCCCcccCCCchhhcCCCcccCCCCCCcccccChHHHHHHHHHHHHHHHHHhhhhhccCCCccccCCChh--hHHHHHH
Q psy9783 402 KAPQPLVWDTLSDAVAGSSKETDGGGLKDQRVWSVAECARVFERSVRELKTKFDAAVEKDEHLVWDKDDKP--AMDFVAA 479 (726)
Q Consensus 402 ~~P~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~s~~~L~~~l~~~~~~~~~l~FDKDDd~--hmDFVtA 479 (726)
|+|+|++||..+.. ...|..+...|..+.-. -..||||||. |||||+|
T Consensus 243 r~P~p~~fd~~~~~------------------------h~~fv~~~a~l~a~~~~------~~~FeKDdd~n~h~~fi~a 292 (435)
T cd01490 243 RCPTPLEFDVNNPL------------------------HLDFVLAAANLYAEVYG------IPGFEKDDDTNFHMDFITA 292 (435)
T ss_pred CCCCCCCCCCCCHH------------------------HHHHHHHHHHHHHHhcC------CCccccCCchhHHHHHHHH
Confidence 89999999975321 12354455555443221 1229999984 9999999
Q ss_pred HHHHhHHhcCCCCCCHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhh--hcccchhhhccCCCCCCccccccccC
Q psy9783 480 CANIRAHVFSIPEKSRFDIKSMAGNIIPAIATSNAIVAGLVVLHAIHVLQAR--FSSCQTVYLRKKPNHRDQMIVPEKYL 557 (726)
Q Consensus 480 AANLRA~nY~Ip~~s~~~vK~IAGnIIPAIATTnAIVAGLvvlEl~KlL~~k--~e~~rn~flnl~pn~~~~~~vP~~~~ 557 (726)
||||||+||+|++.||+++|+|||||||||||||||||||+|+|+||+|+++ ++.|||+|+|++ +|.+.+
T Consensus 293 ~snlRa~~y~I~~~~~~~~k~iag~IIPAiaTT~aivagl~~~e~~K~~~~~~~~~~~~n~~~nla--------~p~~~~ 364 (435)
T cd01490 293 ASNLRARNYSIPPADRHKTKRIAGKIIPAIATTTAAVTGLVCLELYKVVDGKRPLEAYKNAFLNLA--------LPFFAF 364 (435)
T ss_pred hhhhHHHHcCCCccCHHHHHHHhhCCCCchhhHHHHHHHHHHHHHHHHHhCCccHHHcchHhhhcc--------CCcccc
Confidence 9999999999999999999999999999999999999999999999999984 799999999997 677888
Q ss_pred CCCCC-CCCCCCCCCeEEE--EEECC-CCcHHHHH-HHHHhcccCCccceeEEEecCC-eEEEecccc
Q psy9783 558 TAPNP-TCPVCSPKPQRTI--GLDVT-KMTVAEFE-EAVLKKTLNMSAMVDVMVEASG-SVIISSEEG 619 (726)
Q Consensus 558 ~ePnp-~C~vC~~~~~~tl--~id~~-~~TL~~li-d~ilk~~l~m~~~pdV~~~~~G-~ll~ss~e~ 619 (726)
+||.+ .+..|....+||+ +++++ ++||++|+ +++ ++++| .+|++.+.| +++|++++.
T Consensus 365 ~~p~~~~~~~~~~~~~~t~Wdr~~v~~~~t~~~~~~~~~-~~~~~----~~v~~i~~g~~~ly~~~~~ 427 (435)
T cd01490 365 SEPIPAPKVKYAYDEEWTIWDRFEVKGKQTLQELLIDYF-KEKYG----LEVTMLSQGVSMLYSSFMP 427 (435)
T ss_pred ccCCCCCccccCCCCEEeeEeEEEEcCCCcHHHHHHHHH-HHHhC----CeEEEEEeCCeEEEeecCC
Confidence 88875 3455634456777 77774 79999999 998 56677 467888888 899998864
No 5
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=100.00 E-value=6e-85 Score=694.98 Aligned_cols=312 Identities=67% Similarity=1.138 Sum_probs=291.1
Q ss_pred cEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHHHHhhhcCCCCceeeeeccccc
Q psy9783 21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIYYQVDFHLN 100 (726)
Q Consensus 21 kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~~~l~~~np~~~v~~~~~~~~~ 100 (726)
||+||||||+|||++|+|+++|||+|+|+|+|+||.|||+|||||+++|||++||++++++++++
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~l--------------- 65 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSF--------------- 65 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHH---------------
Confidence 69999999999999999999999999999999999999999999999999999999999555544
Q ss_pred hhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchhhhHHHHHHhhCCCCeEEEEe
Q psy9783 101 RQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHH 180 (726)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~~~ak~~~~~~np~~~i~~~~ 180 (726)
||+++|++++
T Consensus 66 ----------------------------------------------------------------------Np~v~V~~~~ 75 (312)
T cd01489 66 ----------------------------------------------------------------------NPNVKIVAYH 75 (312)
T ss_pred ----------------------------------------------------------------------CCCCeEEEEe
Confidence 4555666666
Q ss_pred cccccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccceEEEEeCCCCcceecCCCCCCCCCCCc
Q psy9783 181 TSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKKGETKCYECDPKPAAKTYPGC 260 (726)
Q Consensus 181 ~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~i~p~~t~cy~C~~~~~~~~~p~C 260 (726)
.++.+..++.+||+++|+|++|+||.++|.++|++|+.+++|+|++|+.|+.|+++++.|+.|+||+|.+++.++++|.|
T Consensus 76 ~~i~~~~~~~~f~~~~DvVv~a~Dn~~ar~~in~~c~~~~ip~I~~gt~G~~G~v~vi~p~~t~c~~c~~~~~~~~~pic 155 (312)
T cd01489 76 ANIKDPDFNVEFFKQFDLVFNALDNLAARRHVNKMCLAADVPLIESGTTGFLGQVQVIKKGKTECYECQPKETPKTFPVC 155 (312)
T ss_pred ccCCCccchHHHHhcCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEecCcceeEEEEEcCCCCCccCCCCCCCCCcCCcc
Confidence 66666566778999999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred cccCCCCCcchhhhhHhHHhHHHHHHHhhhcchhHHHHHHHHhhhhhhhhhcccchHHHHHHHhhhccCCcccccccccc
Q psy9783 261 TIRNTPSEPIHCIVWAKHLFNYLERLMLMKRCPLILKIQKLLERLSAMNVIRSQLPKLIQAVQLGILRLNPFTVLSGLNI 340 (726)
Q Consensus 261 ti~~~p~~~~h~i~~a~~lf~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~~p~~~~~~~~~ 340 (726)
||+++|+.|+|||+||+++|+
T Consensus 156 tI~~~p~~~~hci~~a~~~f~----------------------------------------------------------- 176 (312)
T cd01489 156 TIRSTPSQPIHCIVWAKSLFF----------------------------------------------------------- 176 (312)
T ss_pred eecCCCCCCEeehhHHHHHHH-----------------------------------------------------------
Confidence 999999999999999997643
Q ss_pred ccchhhhhHhhhhhhhcCCccccccccchhhcccchHHHHHHHhHHHHHHHHcCCcccCCCCCCCCcccCCCchhhcCCC
Q psy9783 341 CSSDAGAKAAASEATANGDVVRTSTRAWASACGYDPRKLFAKFFDADIRYLISMSDLWKTRKAPQPLVWDTLSDAVAGSS 420 (726)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~l~~~~~~~w~~~c~~~~~~~f~~~F~~~I~~Ll~~~~~w~~~~~P~pl~~~~~~~~~~~~~ 420 (726)
+|+++|++||++|+++++||+++++|.|+.|+.
T Consensus 177 --------------------------------------~~~~~f~~~i~~l~~~~~~w~~~~~p~p~~~~~--------- 209 (312)
T cd01489 177 --------------------------------------LFNKVFKDDIERLLSMEELWKTRKPPVPLSWKE--------- 209 (312)
T ss_pred --------------------------------------HHHHHHHHHHHHHHhhhhhhcCCCCCCCCCCCC---------
Confidence 366789999999999999999999999998743
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHHHHHHHHhhhhhccCCCccccCCChhhHHHHHHHHHHhHHhcCCCCCCHHHHHH
Q psy9783 421 KETDGGGLKDQRVWSVAECARVFERSVRELKTKFDAAVEKDEHLVWDKDDKPAMDFVAACANIRAHVFSIPEKSRFDIKS 500 (726)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~f~~s~~~L~~~l~~~~~~~~~l~FDKDDd~hmDFVtAAANLRA~nY~Ip~~s~~~vK~ 500 (726)
++|||||+.||+||+|+|||||++|+|+..|+|++|+
T Consensus 210 -------------------------------------------~~fdkDd~~~~~~v~~~a~lRa~~f~I~~~~~~~~k~ 246 (312)
T cd01489 210 -------------------------------------------LTFDKDDQDALDFVAAAANLRSHVFGIPMKSRFDIKQ 246 (312)
T ss_pred -------------------------------------------cCcCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHH
Confidence 2499999999999999999999999999999999999
Q ss_pred hhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhcccchhhhccCCCCCCccccccccCCCCCCCCCCC
Q psy9783 501 MAGNIIPAIATSNAIVAGLVVLHAIHVLQARFSSCQTVYLRKKPNHRDQMIVPEKYLTAPNPTCPVC 567 (726)
Q Consensus 501 IAGnIIPAIATTnAIVAGLvvlEl~KlL~~k~e~~rn~flnl~pn~~~~~~vP~~~~~ePnp~C~vC 567 (726)
|||||||||||||||||||+++|++|++.+..+.+|++|+|+.++++++++.| ..+++|||.|+||
T Consensus 247 i~g~IiPaiatTnaivag~~~~e~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~n~~c~~c 312 (312)
T cd01489 247 MAGNIIPAIATTNAIIAGLIVLEALKVLSGDKEQCRTVFLNLQPNRRKRLLVP-CKLDPPNPNCYVC 312 (312)
T ss_pred HhccccchhhHHHHHHHHHHHHHHHHHHhhhHHHhhhHhhhcccCCCCcEecC-CCCCCcCCCCCCC
Confidence 99999999999999999999999999999999999999999998988899999 7899999999999
No 6
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=100.00 E-value=8.3e-66 Score=529.34 Aligned_cols=233 Identities=48% Similarity=0.833 Sum_probs=213.5
Q ss_pred cEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHHHHhhhcCCCCceeeeeccccc
Q psy9783 21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIYYQVDFHLN 100 (726)
Q Consensus 21 kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~~~l~~~np~~~v~~~~~~~~~ 100 (726)
||+|||+||+|||++|+|+++|||+|+|+|+|+||.|||||||||+++|||++|+++|+++++++||+
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~------------ 68 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPN------------ 68 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCC------------
Confidence 69999999999999999999999999999999999999999999999999999999999665555554
Q ss_pred hhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchhhhHHHHHHhhCCCCeEEEEe
Q psy9783 101 RQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHH 180 (726)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~~~ak~~~~~~np~~~i~~~~ 180 (726)
++|+++.
T Consensus 69 -------------------------------------------------------------------------v~i~~~~ 75 (234)
T cd01484 69 -------------------------------------------------------------------------CKVVPYQ 75 (234)
T ss_pred -------------------------------------------------------------------------CEEEEEe
Confidence 4555555
Q ss_pred ccccc-ccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccceEEEEeCCCCcceecCCCCCCCCCCC
Q psy9783 181 TSIIS-ADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKKGETKCYECDPKPAAKTYPG 259 (726)
Q Consensus 181 ~~i~~-~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~i~p~~t~cy~C~~~~~~~~~p~ 259 (726)
.++.+ ..++.+|++++|+|++|+||.++|.++|++|+.+++|+|++|+.|+.|+++++.|+.|+||+|.+.+.++++|.
T Consensus 76 ~~i~~~~~~~~~f~~~~DvVi~a~Dn~~aR~~ln~~c~~~~iplI~~g~~G~~G~v~vi~p~~t~c~~C~~~~~~~~~p~ 155 (234)
T cd01484 76 NKVGPEQDFNDTFFEQFHIIVNALDNIIARRYVNGMLIFLIVPLIESGTEGFKGNAQVILPGMTECIECTLYPPQKNFPM 155 (234)
T ss_pred ccCChhhhchHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcccCCceEEEEEcCCCCCCcccCCCCCCCCCCc
Confidence 55533 24567899999999999999999999999999999999999999999999999999999999999888899999
Q ss_pred ccccCCCCCcchhhhhHhHHhHHHHHHHhhhcchhHHHHHHHHhhhhhhhhhcccchHHHHHHHhhhccCCccccccccc
Q psy9783 260 CTIRNTPSEPIHCIVWAKHLFNYLERLMLMKRCPLILKIQKLLERLSAMNVIRSQLPKLIQAVQLGILRLNPFTVLSGLN 339 (726)
Q Consensus 260 Cti~~~p~~~~h~i~~a~~lf~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~~p~~~~~~~~ 339 (726)
|||+++|+.|+|||+||+++|
T Consensus 156 Cti~~~P~~~~hci~~a~~~~----------------------------------------------------------- 176 (234)
T cd01484 156 CTIASMPRLPEHCIEWARMLQ----------------------------------------------------------- 176 (234)
T ss_pred cccCCCCCCchHHHHHHHHHH-----------------------------------------------------------
Confidence 999999999999999997320
Q ss_pred cccchhhhhHhhhhhhhcCCccccccccchhhcccchHHHHHHHhHHHHHHHHcCCcccCCCCCCCCcccCCCchhhcCC
Q psy9783 340 ICSSDAGAKAAASEATANGDVVRTSTRAWASACGYDPRKLFAKFFDADIRYLISMSDLWKTRKAPQPLVWDTLSDAVAGS 419 (726)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~w~~~c~~~~~~~f~~~F~~~I~~Ll~~~~~w~~~~~P~pl~~~~~~~~~~~~ 419 (726)
T Consensus 177 -------------------------------------------------------------------------------- 176 (234)
T cd01484 177 -------------------------------------------------------------------------------- 176 (234)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccCCCCCCcccccChHHHHHHHHHHHHHHHHHhhhhhccCCCccccCCChhhHHHHHHHHHHhHHhcCCCCCCHHHHH
Q psy9783 420 SKETDGGGLKDQRVWSVAECARVFERSVRELKTKFDAAVEKDEHLVWDKDDKPAMDFVAACANIRAHVFSIPEKSRFDIK 499 (726)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~f~~s~~~L~~~l~~~~~~~~~l~FDKDDd~hmDFVtAAANLRA~nY~Ip~~s~~~vK 499 (726)
| ||+.||+||+++||+||++|+|++.|++++|
T Consensus 177 ----------------------------------------------~--d~~~~~~~i~~~a~~ra~~~~i~~~~~~~~~ 208 (234)
T cd01484 177 ----------------------------------------------W--DDPEHIQFIFQASNERASQYNIRGVTYFLTK 208 (234)
T ss_pred ----------------------------------------------h--CCHHHHHHHHHHHHHHHHHcCCCCcCHHHHH
Confidence 1 6778999999999999999999999999999
Q ss_pred HhhcCCCcchhHHHHHHHHHHHHHHH
Q psy9783 500 SMAGNIIPAIATSNAIVAGLVVLHAI 525 (726)
Q Consensus 500 ~IAGnIIPAIATTnAIVAGLvvlEl~ 525 (726)
+||||||||||||||||||++|+|++
T Consensus 209 ~i~~~iipai~tTnaiia~~~~~e~~ 234 (234)
T cd01484 209 GVAGRIIPAVATTNAVVAGVCALEVF 234 (234)
T ss_pred HHhcCeecchhhHHHHHHHHHHHhhC
Confidence 99999999999999999999999985
No 7
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=100.00 E-value=3.5e-64 Score=530.97 Aligned_cols=281 Identities=39% Similarity=0.669 Sum_probs=239.9
Q ss_pred cEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHHHHhhhcCCCCceeeeeccccc
Q psy9783 21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIYYQVDFHLN 100 (726)
Q Consensus 21 kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~~~l~~~np~~~v~~~~~~~~~ 100 (726)
|||||||||+|||+||+|+++|||+|+|+|+|+||.|||||||||+.+|||++||++|+++++++|
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~n-------------- 66 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRV-------------- 66 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHC--------------
Confidence 699999999999999999999999999999999999999999999999999999999995555554
Q ss_pred hhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchhhhHHHHHHhhCCCCeEEEEe
Q psy9783 101 RQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHH 180 (726)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~~~ak~~~~~~np~~~i~~~~ 180 (726)
|+++|+++.
T Consensus 67 -----------------------------------------------------------------------p~v~I~~~~ 75 (291)
T cd01488 67 -----------------------------------------------------------------------PGVNVTPHF 75 (291)
T ss_pred -----------------------------------------------------------------------CCCEEEEEe
Confidence 555566666
Q ss_pred cccccccccccccccccEEEEccCcHHHHHHHHHHhhhc--------CCcEEEEccCCccceEEEEeCCCCcceecCCC-
Q psy9783 181 TSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLAS--------EVPLIESGTAGYEGQVELIKKGETKCYECDPK- 251 (726)
Q Consensus 181 ~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~--------~iPlI~sg~~G~~G~v~~i~p~~t~cy~C~~~- 251 (726)
.++.+ ++.+|+++||+|++|+||.++|+++|++|... ++|+|++|+.|+.|+++++.|+.|+||+|..+
T Consensus 76 ~~i~~--~~~~f~~~fdvVi~alDn~~aR~~in~~~~~~~~~~~~~~~iPlI~~gt~G~~G~v~vi~P~~t~C~~C~~d~ 153 (291)
T cd01488 76 GKIQD--KDEEFYRQFNIIICGLDSIEARRWINGTLVSLLLYEDPESIIPLIDGGTEGFKGHARVILPGITACIECSLDL 153 (291)
T ss_pred cccCc--hhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhccccccccCccEEEEEEcccEEEEEEEcCCCCCccccCCCC
Confidence 66653 35689999999999999999999999998764 49999999999999999999999999999975
Q ss_pred -CCCCCCCCccccCCCCCcchhhhhHhHHhHHHHHHHhhhcchhHHHHHHHHhhhhhhhhhcccchHHHHHHHhhhccCC
Q psy9783 252 -PAAKTYPGCTIRNTPSEPIHCIVWAKHLFNYLERLMLMKRCPLILKIQKLLERLSAMNVIRSQLPKLIQAVQLGILRLN 330 (726)
Q Consensus 252 -~~~~~~p~Cti~~~p~~~~h~i~~a~~lf~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~~ 330 (726)
|+++++|.|||+++|+.|+|||+||+.+
T Consensus 154 ~p~~~~~p~Cti~~~P~~~~hci~~a~~~--------------------------------------------------- 182 (291)
T cd01488 154 FPPQVTFPLCTIANTPRLPEHCIEYASLI--------------------------------------------------- 182 (291)
T ss_pred CCCCCCCCcccccCCCCCcchheeeeeee---------------------------------------------------
Confidence 6778999999999999999999999743
Q ss_pred ccccccccccccchhhhhHhhhhhhhcCCccccccccchhhcccchHHHHHHHhHHHHHHHHcCCcccCCCCCCCCcccC
Q psy9783 331 PFTVLSGLNICSSDAGAKAAASEATANGDVVRTSTRAWASACGYDPRKLFAKFFDADIRYLISMSDLWKTRKAPQPLVWD 410 (726)
Q Consensus 331 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~w~~~c~~~~~~~f~~~F~~~I~~Ll~~~~~w~~~~~P~pl~~~ 410 (726)
.|.+ .++
T Consensus 183 ------------------------------------~~~~------------------------------~~~------- 189 (291)
T cd01488 183 ------------------------------------QWPK------------------------------EFP------- 189 (291)
T ss_pred ------------------------------------eccc------------------------------ccC-------
Confidence 1210 000
Q ss_pred CCchhhcCCCcccCCCCCCcccccChHHHHHHHHHHHHHHHHHhhhhhccCCCccccCCChhhHHHHHHHHHHhHHhcCC
Q psy9783 411 TLSDAVAGSSKETDGGGLKDQRVWSVAECARVFERSVRELKTKFDAAVEKDEHLVWDKDDKPAMDFVAACANIRAHVFSI 490 (726)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~s~~~L~~~l~~~~~~~~~l~FDKDDd~hmDFVtAAANLRA~nY~I 490 (726)
...||+||+.||+||+..|+.||.+|+|
T Consensus 190 ----------------------------------------------------~~~~~~d~~~~~~~i~~~a~~ra~~f~i 217 (291)
T cd01488 190 ----------------------------------------------------FVPLDGDDPEHIEWLYQKALERAAQFNI 217 (291)
T ss_pred ----------------------------------------------------CCcCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 0139999999999999999999999999
Q ss_pred CCCCHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhcccchhhhccCCCCCCccccccccCCCCCCCCCCCC
Q psy9783 491 PEKSRFDIKSMAGNIIPAIATSNAIVAGLVVLHAIHVLQARFSSCQTVYLRKKPNHRDQMIVPEKYLTAPNPTCPVCS 568 (726)
Q Consensus 491 p~~s~~~vK~IAGnIIPAIATTnAIVAGLvvlEl~KlL~~k~e~~rn~flnl~pn~~~~~~vP~~~~~ePnp~C~vC~ 568 (726)
+..+++.+++|+||||||||||||||||+++.|++|++.+..... +.|+.. ++..+ +..+....+++|.|.||+
T Consensus 218 ~~~~~~~~~~v~~~iiPai~stnaiia~~~~~~~~k~~~~~~~~~-~n~~~~--~g~~g-~~~~~~~~~~~~~c~~c~ 291 (291)
T cd01488 218 SGVTYSLTQGVVKRIIPAVASTNAIIAAACCLEALKIATDCYENL-NNYLMY--NGVDG-CYTYTFEHERKEDCPVCS 291 (291)
T ss_pred CcccHHHHhhhHheeeCccCchHHHHHHHHHHHHHHHHhccccCC-CceEEE--ecCCc-eEEEEEEEeeCCCCCCCC
Confidence 999999999999999999999999999999999999999743322 334433 22223 334467789999999995
No 8
>KOG2015|consensus
Probab=100.00 E-value=1.6e-62 Score=510.39 Aligned_cols=353 Identities=34% Similarity=0.604 Sum_probs=295.1
Q ss_pred CHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHHHHhhhcCCCC
Q psy9783 10 EKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARNSALNFNPDA 89 (726)
Q Consensus 10 g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~~~l~~~np~~ 89 (726)
+.+..+.|.++||||+||||+|||++|||+++||+.++|||+|+||+|||||||||+++|+|++||++||+
T Consensus 31 ~~e~l~~l~~~kiLviGAGGLGCElLKnLal~gF~~~~viDmDTId~sNLNRQFLF~~~DiG~pKAqvAA~--------- 101 (422)
T KOG2015|consen 31 SEENLEFLQDCKILVIGAGGLGCELLKNLALSGFRQLHVIDMDTIDLSNLNRQFLFRESDIGEPKAQVAAE--------- 101 (422)
T ss_pred CHHHHHHHhhCcEEEEccCcccHHHHHhHHhhccceeEEEeecceecccchhhhcccccccCchhHHHHHH---------
Confidence 67888999999999999999999999999999999999999999999999999999999999999999994
Q ss_pred ceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchhhhHHHHHHh
Q psy9783 90 NIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALN 169 (726)
Q Consensus 90 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~~~ak~~~~~ 169 (726)
.+..
T Consensus 102 ----------------------------------------------------------------------------fvn~ 105 (422)
T KOG2015|consen 102 ----------------------------------------------------------------------------FVNR 105 (422)
T ss_pred ----------------------------------------------------------------------------HHHh
Confidence 4444
Q ss_pred hCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhhh---cC-------CcEEEEccCCccceEEEEe
Q psy9783 170 FNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLA---SE-------VPLIESGTAGYEGQVELIK 239 (726)
Q Consensus 170 ~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~---~~-------iPlI~sg~~G~~G~v~~i~ 239 (726)
..|...|..|..+|+ +++.+|+++|++||+++|+.++|+++|.|... .+ ||+|++|+.|++|++.++.
T Consensus 106 Rvp~~~v~~h~~kIq--d~~~~FYk~F~~iicGLDsIeaRRwIN~mL~~l~~~g~~d~~~iiPlIDGGtEG~KG~arvI~ 183 (422)
T KOG2015|consen 106 RVPGCVVVPHRQKIQ--DKPISFYKRFDLIICGLDSIEARRWINGMLVRLKLEGNYDISSIIPLIDGGTEGFKGHARVIY 183 (422)
T ss_pred hCCCcEEeeeecchh--cCCHHHHhhhceEEecccchhHHHHHHHHHHHHHhccCCCccceeeeeecCcccccceeEEEe
Confidence 556667777777776 46789999999999999999999999998765 22 7999999999999999999
Q ss_pred CCCCcceecCCC--CCCCCCCCccccCCCCCcchhhhhHhHHhHHHHHHHhhhcchhHHHHHHHHhhhhhhhhhcccchH
Q psy9783 240 KGETKCYECDPK--PAAKTYPGCTIRNTPSEPIHCIVWAKHLFNYLERLMLMKRCPLILKIQKLLERLSAMNVIRSQLPK 317 (726)
Q Consensus 240 p~~t~cy~C~~~--~~~~~~p~Cti~~~p~~~~h~i~~a~~lf~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (726)
|+.|.|++|..+ |++.+||+|||.|+|..|+|||.|.+-+
T Consensus 184 Pg~TaCieCtldlyppqvs~P~CTiAntPRlpEHciEyv~li-------------------------------------- 225 (422)
T KOG2015|consen 184 PGITACIECTLDLYPPQVSYPMCTIANTPRLPEHCIEYVKLI-------------------------------------- 225 (422)
T ss_pred cCccHHHHhHHhhcCcccCcccceecCCCCCchHhhhhhhhh--------------------------------------
Confidence 999999999954 6778899999999999999999997621
Q ss_pred HHHHHHhhhccCCccccccccccccchhhhhHhhhhhhhcCCccccccccchhhcccchHHHHHHHhHHHHHHHHcCCcc
Q psy9783 318 LIQAVQLGILRLNPFTVLSGLNICSSDAGAKAAASEATANGDVVRTSTRAWASACGYDPRKLFAKFFDADIRYLISMSDL 397 (726)
Q Consensus 318 ~~~~v~~G~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~w~~~c~~~~~~~f~~~F~~~I~~Ll~~~~~ 397 (726)
+|++.
T Consensus 226 -------------------------------------------------qwpe~-------------------------- 230 (422)
T KOG2015|consen 226 -------------------------------------------------QWPEL-------------------------- 230 (422)
T ss_pred -------------------------------------------------cchhh--------------------------
Confidence 23210
Q ss_pred cCCCCCCCCcccCCCchhhcCCCcccCCCCCCcccccChHHHHHHHHHHHHHHHHHhhhhhccCCCccccCCChhhHHHH
Q psy9783 398 WKTRKAPQPLVWDTLSDAVAGSSKETDGGGLKDQRVWSVAECARVFERSVRELKTKFDAAVEKDEHLVWDKDDKPAMDFV 477 (726)
Q Consensus 398 w~~~~~P~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~s~~~L~~~l~~~~~~~~~l~FDKDDd~hmDFV 477 (726)
++ ....+|-||+.||+||
T Consensus 231 ----~~----------------------------------------------------------~g~~~~gdd~~hI~wi 248 (422)
T KOG2015|consen 231 ----NP----------------------------------------------------------FGVPLDGDDPEHIEWI 248 (422)
T ss_pred ----Cc----------------------------------------------------------cCCCCCCCCHHHHHHH
Confidence 00 0112778999999999
Q ss_pred HHHHHHhHHhcCCCCCCHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhcccchhhhccCCCCCCccccccccC
Q psy9783 478 AACANIRAHVFSIPEKSRFDIKSMAGNIIPAIATSNAIVAGLVVLHAIHVLQARFSSCQTVYLRKKPNHRDQMIVPEKYL 557 (726)
Q Consensus 478 tAAANLRA~nY~Ip~~s~~~vK~IAGnIIPAIATTnAIVAGLvvlEl~KlL~~k~e~~rn~flnl~pn~~~~~~vP~~~~ 557 (726)
.--+|.||..|+|+..+++.+.++..+||||+|||||+||+.++.|++|++..- ..+-+.|++.. .- ..+..+...
T Consensus 249 ~er~~eRA~ef~I~gv~~~lvtGvvK~IIPaVasTNA~IAA~Ca~ea~Kl~t~~-~~~~~Nym~~n--~~-eG~ytytf~ 324 (422)
T KOG2015|consen 249 VERSNERANEFNITGVTRRLVTGVVKRIIPAVASTNAVIAAVCATEALKLLTAT-DDPLDNYMNYN--AE-EGIYTYTFL 324 (422)
T ss_pred HHHHHHHhhhcccccchHHhhhhhHHhhcchhhhhhHHHHHHHHHHHHHHHHhc-chhhhhheeee--cc-cceeEEEee
Confidence 999999999999999999999999999999999999999999999999999862 23335566652 11 223444677
Q ss_pred CCCCCCCCCCCCCCeEEEEEECCCCcHHHHHHHHHhcccCCccceeEEEecCCeEEEec---cccccccccCCchhhh
Q psy9783 558 TAPNPTCPVCSPKPQRTIGLDVTKMTVAEFEEAVLKKTLNMSAMVDVMVEASGSVIISS---EEGETEANNDKPLEHG 632 (726)
Q Consensus 558 ~ePnp~C~vC~~~~~~tl~id~~~~TL~~lid~ilk~~l~m~~~pdV~~~~~G~ll~ss---~e~e~~~nl~k~L~el 632 (726)
.+..++|.||+..++ .+.+. ...||+++++++ .+.|+|.. |.++....-.+|.++ .|..+..||.++|.|+
T Consensus 325 ~er~~nC~vCS~~~~-~~~is-pt~tl~~vl~~l-s~~~~lk~-p~~tt~~~~~ly~~~~~~~e~~t~~nl~~~l~~l 398 (422)
T KOG2015|consen 325 LERDKNCPVCSNLVQ-NYDIS-PTVTLEDVLNHL-SKSFQLKS-PALTTAAGRTLYLSSVPSIEEATRKNLSQSLKEL 398 (422)
T ss_pred eccCCCCccccCCCc-ccccC-CcccHHHHHHHh-hhhhccCC-chhhhhhcceEeecCCcHHHHHhhhhhhhhHHHh
Confidence 888999999998653 33444 378999999997 47889988 998765333565553 4567899999999998
No 9
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=100.00 E-value=4.9e-36 Score=302.19 Aligned_cols=178 Identities=30% Similarity=0.469 Sum_probs=156.1
Q ss_pred Ccccccc--cCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHH
Q psy9783 2 ATKIPGV--FEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVAR 79 (726)
Q Consensus 2 ~~~~~~~--~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~ 79 (726)
+.||+++ ||.+.|++|++++|+|||+||+||+++++|+++|+++|+|+|.|.|+.+||+|||||+++|+|++|+++++
T Consensus 2 Y~Rqi~l~~~g~~~q~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~ 81 (202)
T TIGR02356 2 YARQLLLPDIGEEGQQRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAA 81 (202)
T ss_pred CcceecchhcCHHHHHHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHH
Confidence 6899998 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcch
Q psy9783 80 NSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSK 159 (726)
Q Consensus 80 ~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk 159 (726)
++++++||++++...
T Consensus 82 ~~l~~~np~v~i~~~----------------------------------------------------------------- 96 (202)
T TIGR02356 82 QRLRELNSDIQVTAL----------------------------------------------------------------- 96 (202)
T ss_pred HHHHHhCCCCEEEEe-----------------------------------------------------------------
Confidence 888877777665542
Q ss_pred hhhHHHHHHhhCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccceEEEEe
Q psy9783 160 AQVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIK 239 (726)
Q Consensus 160 ~~~ak~~~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~i~ 239 (726)
...+.+. .-.++++++|+||+|+||+++|.++|++|+.+++|+|.+++.|+.|++.++.
T Consensus 97 --------------------~~~i~~~-~~~~~~~~~D~Vi~~~d~~~~r~~l~~~~~~~~ip~i~~~~~g~~G~~~~~~ 155 (202)
T TIGR02356 97 --------------------KERVTAE-NLELLINNVDLVLDCTDNFATRYLINDACVALGTPLISAAVVGFGGQLMVFD 155 (202)
T ss_pred --------------------hhcCCHH-HHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccCeEEEEEEe
Confidence 2222221 1135788999999999999999999999999999999999999999999999
Q ss_pred CC-CCcceecCCCCCCCCCCCccccCC
Q psy9783 240 KG-ETKCYECDPKPAAKTYPGCTIRNT 265 (726)
Q Consensus 240 p~-~t~cy~C~~~~~~~~~p~Cti~~~ 265 (726)
|+ .++||+|.....+...+.|+....
T Consensus 156 p~~~~~c~~c~~~~~~~~~~~~~~~~~ 182 (202)
T TIGR02356 156 PGGEGPCLRCLFPDIADTGPSCATAGV 182 (202)
T ss_pred CCCCCCChhhcCCCCcccCCCCccCCc
Confidence 88 799999997654555677865543
No 10
>PRK08223 hypothetical protein; Validated
Probab=100.00 E-value=2.4e-35 Score=310.72 Aligned_cols=178 Identities=21% Similarity=0.284 Sum_probs=154.7
Q ss_pred CcccccccCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHHHH
Q psy9783 2 ATKIPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARNS 81 (726)
Q Consensus 2 ~~~~~~~~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~~~ 81 (726)
++||+.+||.+.|++|++++|+||||||+||+++++|+++|||+|+|+|.|+||.||||||++|+.+|||++|+++++++
T Consensus 10 ysRq~~~iG~e~Q~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~ 89 (287)
T PRK08223 10 FCRNLGWITPTEQQRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEM 89 (287)
T ss_pred HhhhhhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999977
Q ss_pred hhhcCCCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchhh
Q psy9783 82 ALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQ 161 (726)
Q Consensus 82 l~~~np~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~~ 161 (726)
++++||+++|.
T Consensus 90 l~~iNP~v~V~--------------------------------------------------------------------- 100 (287)
T PRK08223 90 VRDINPELEIR--------------------------------------------------------------------- 100 (287)
T ss_pred HHHHCCCCEEE---------------------------------------------------------------------
Confidence 77666665544
Q ss_pred hHHHHHHhhCCCCeEEEEecccccccccccccccccEEEEccCcH--HHHHHHHHHhhhcCCcEEEEccCCccceEEEEe
Q psy9783 162 VARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNR--AARNHVNRMCLASEVPLIESGTAGYEGQVELIK 239 (726)
Q Consensus 162 ~ak~~~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~--~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~i~ 239 (726)
++...++++ ...++++++|+||+|+||+ ++|.++|+.|+.+++|+|.+++.|+.|++.++.
T Consensus 101 ----------------~~~~~l~~~-n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~~~~g~~gqv~v~~ 163 (287)
T PRK08223 101 ----------------AFPEGIGKE-NADAFLDGVDVYVDGLDFFEFDARRLVFAACQQRGIPALTAAPLGMGTALLVFD 163 (287)
T ss_pred ----------------EEecccCcc-CHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEEeccCCeEEEEEEc
Confidence 444444432 2347889999999999996 899999999999999999999999999999999
Q ss_pred CCCCcceecCCCC----CC---------CCCCCccccCCC
Q psy9783 240 KGETKCYECDPKP----AA---------KTYPGCTIRNTP 266 (726)
Q Consensus 240 p~~t~cy~C~~~~----~~---------~~~p~Cti~~~p 266 (726)
|+ ++||+|.+.. ++ ...|.|.-....
T Consensus 164 p~-~p~~~~~f~~~~~~~~~~~~~~~~~~~~p~c~~~gvl 202 (287)
T PRK08223 164 PG-GMSFDDYFDLSDGMNEVEKAVRFLAGLAPSMLHRGYL 202 (287)
T ss_pred CC-CCchhhhcCCCCCCCchhhhcccCCcCCCccccCCcc
Confidence 86 7999998532 22 466788766665
No 11
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=100.00 E-value=8.1e-35 Score=297.96 Aligned_cols=176 Identities=30% Similarity=0.509 Sum_probs=152.4
Q ss_pred CCcccccc--cCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHH
Q psy9783 1 MATKIPGV--FEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVA 78 (726)
Q Consensus 1 ~~~~~~~~--~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va 78 (726)
.+.||+++ ||.+.|++|++++|+||||||+||+++++|+++||++|+|+|.|.|+.+||+|||||+++|+|++|++++
T Consensus 1 rY~Rq~~l~~~g~~~q~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~ 80 (228)
T cd00757 1 RYSRQILLPEIGEEGQEKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAA 80 (228)
T ss_pred CcceeechhhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHH
Confidence 36899999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcc
Q psy9783 79 RNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKS 158 (726)
Q Consensus 79 ~~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~s 158 (726)
+++++++||++++...
T Consensus 81 ~~~l~~~np~~~i~~~---------------------------------------------------------------- 96 (228)
T cd00757 81 AERLRAINPDVEIEAY---------------------------------------------------------------- 96 (228)
T ss_pred HHHHHHhCCCCEEEEe----------------------------------------------------------------
Confidence 9888877777665542
Q ss_pred hhhhHHHHHHhhCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccceEEEE
Q psy9783 159 KAQVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELI 238 (726)
Q Consensus 159 k~~~ak~~~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~i 238 (726)
...++. ....++++++|+||+|+|++++|.+++++|+.+++|+|.+|+.|+.|++.++
T Consensus 97 ---------------------~~~i~~-~~~~~~~~~~DvVi~~~d~~~~r~~l~~~~~~~~ip~i~~g~~g~~g~v~~~ 154 (228)
T cd00757 97 ---------------------NERLDA-ENAEELIAGYDLVLDCTDNFATRYLINDACVKLGKPLVSGAVLGFEGQVTVF 154 (228)
T ss_pred ---------------------cceeCH-HHHHHHHhCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEeccCEEEEEEE
Confidence 222221 1123567889999999999999999999999999999999999999999999
Q ss_pred eCCCCcceecCCCCCCC-CCCCccc
Q psy9783 239 KKGETKCYECDPKPAAK-TYPGCTI 262 (726)
Q Consensus 239 ~p~~t~cy~C~~~~~~~-~~p~Cti 262 (726)
.|+.++||.|....... ..+.|..
T Consensus 155 ~p~~~~c~~c~~~~~~~~~~~~~~~ 179 (228)
T cd00757 155 IPGEGPCYRCLFPEPPPPGVPSCAE 179 (228)
T ss_pred CCCCCCCccccCCCCCCCCCCcccc
Confidence 99999999998653221 1345543
No 12
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=100.00 E-value=1.1e-34 Score=300.51 Aligned_cols=164 Identities=31% Similarity=0.548 Sum_probs=145.7
Q ss_pred Ccccccc--cCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHH
Q psy9783 2 ATKIPGV--FEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVAR 79 (726)
Q Consensus 2 ~~~~~~~--~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~ 79 (726)
+.||+++ ||.++|++|++++|+|||+||+||+++++|+++||++|+|+|.|.|+.|||+||+||+.+|||++|+++++
T Consensus 13 Y~Rqi~l~~~g~~~Q~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~ 92 (245)
T PRK05690 13 YNRQIILRGFDFDGQEKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESAR 92 (245)
T ss_pred HHHhccchhcCHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHH
Confidence 5688876 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcch
Q psy9783 80 NSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSK 159 (726)
Q Consensus 80 ~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk 159 (726)
++|+++||++++.
T Consensus 93 ~~l~~lnp~v~i~------------------------------------------------------------------- 105 (245)
T PRK05690 93 AALARINPHIAIE------------------------------------------------------------------- 105 (245)
T ss_pred HHHHHHCCCCEEE-------------------------------------------------------------------
Confidence 7777777666544
Q ss_pred hhhHHHHHHhhCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccceEEEEe
Q psy9783 160 AQVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIK 239 (726)
Q Consensus 160 ~~~ak~~~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~i~ 239 (726)
++...+++. ...++++++|+||+|+||+++|.++|++|+.+++|+|.+++.|+.|++.++.
T Consensus 106 ------------------~~~~~i~~~-~~~~~~~~~DiVi~~~D~~~~r~~ln~~~~~~~ip~v~~~~~g~~G~v~~~~ 166 (245)
T PRK05690 106 ------------------TINARLDDD-ELAALIAGHDLVLDCTDNVATRNQLNRACFAAKKPLVSGAAIRMEGQVTVFT 166 (245)
T ss_pred ------------------EEeccCCHH-HHHHHHhcCCEEEecCCCHHHHHHHHHHHHHhCCEEEEeeeccCCceEEEEe
Confidence 333333321 2246789999999999999999999999999999999999999999999999
Q ss_pred CCC-CcceecCCC
Q psy9783 240 KGE-TKCYECDPK 251 (726)
Q Consensus 240 p~~-t~cy~C~~~ 251 (726)
|+. ++||+|...
T Consensus 167 ~~~~~~c~~c~~~ 179 (245)
T PRK05690 167 YQDDEPCYRCLSR 179 (245)
T ss_pred cCCCCceeeeccC
Confidence 875 799999864
No 13
>PRK07411 hypothetical protein; Validated
Probab=100.00 E-value=1.5e-34 Score=317.83 Aligned_cols=177 Identities=27% Similarity=0.398 Sum_probs=153.7
Q ss_pred Ccccccc--cCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHH
Q psy9783 2 ATKIPGV--FEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVAR 79 (726)
Q Consensus 2 ~~~~~~~--~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~ 79 (726)
+.||+++ ||.++|++|++++|+||||||+||+++++|+++|||+|+|+|.|+||.|||+|||||+..|||++|+++++
T Consensus 19 y~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~ 98 (390)
T PRK07411 19 YSRHLILPEVGLEGQKRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAK 98 (390)
T ss_pred hhceechhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHH
Confidence 6799999 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcch
Q psy9783 80 NSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSK 159 (726)
Q Consensus 80 ~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk 159 (726)
++|+++||+++|.
T Consensus 99 ~~l~~~np~v~v~------------------------------------------------------------------- 111 (390)
T PRK07411 99 NRILEINPYCQVD------------------------------------------------------------------- 111 (390)
T ss_pred HHHHHHCCCCeEE-------------------------------------------------------------------
Confidence 7777766665544
Q ss_pred hhhHHHHHHhhCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccceEEEEe
Q psy9783 160 AQVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIK 239 (726)
Q Consensus 160 ~~~ak~~~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~i~ 239 (726)
++...++.. ...+++.++|+||+|+||+++|.++|++|+.+++|+|.+++.|+.||+.++.
T Consensus 112 ------------------~~~~~~~~~-~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~~g~~g~~~v~~ 172 (390)
T PRK07411 112 ------------------LYETRLSSE-NALDILAPYDVVVDGTDNFPTRYLVNDACVLLNKPNVYGSIFRFEGQATVFN 172 (390)
T ss_pred ------------------EEecccCHH-hHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEccCEEEEEEEC
Confidence 444444332 2346789999999999999999999999999999999999999999999998
Q ss_pred CCCCcceecCCCC--CCCCCCCccccC
Q psy9783 240 KGETKCYECDPKP--AAKTYPGCTIRN 264 (726)
Q Consensus 240 p~~t~cy~C~~~~--~~~~~p~Cti~~ 264 (726)
++.++||+|.... .....|.|....
T Consensus 173 ~~~~~c~~c~~~~~~~~~~~~~c~~~g 199 (390)
T PRK07411 173 YEGGPNYRDLYPEPPPPGMVPSCAEGG 199 (390)
T ss_pred CCCCCChHHhcCCCCCcccCCCCccCC
Confidence 8889999999642 233456776443
No 14
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=100.00 E-value=1.5e-34 Score=305.31 Aligned_cols=185 Identities=20% Similarity=0.344 Sum_probs=163.4
Q ss_pred CCcccccccCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHHH
Q psy9783 1 MATKIPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARN 80 (726)
Q Consensus 1 ~~~~~~~~~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~~ 80 (726)
++.||+++||.+.|++|++++|||||+||+|||+||||+++||++|+|+|.|.++.+||+|||||+++|||++|++++++
T Consensus 1 lYsRQl~~~G~eaq~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~ 80 (286)
T cd01491 1 LYSRQLYVLGHEAMKKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQA 80 (286)
T ss_pred CcccceeccCHHHHHHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred HhhhcCCCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchh
Q psy9783 81 SALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKA 160 (726)
Q Consensus 81 ~l~~~np~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~ 160 (726)
+|+++||+++|..
T Consensus 81 ~L~eLNp~V~V~~------------------------------------------------------------------- 93 (286)
T cd01491 81 RLAELNPYVPVTV------------------------------------------------------------------- 93 (286)
T ss_pred HHHHHCCCCEEEE-------------------------------------------------------------------
Confidence 7777777665543
Q ss_pred hhHHHHHHhhCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccceEEEEeC
Q psy9783 161 QVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKK 240 (726)
Q Consensus 161 ~~ak~~~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~i~p 240 (726)
++..+ +.+++.+||+||+|.|+.++|.++|++|+++++|+|.+++.|+.|++...
T Consensus 94 ------------------~~~~~-----~~~~l~~fdvVV~~~~~~~~~~~in~~c~~~~ipfI~a~~~G~~G~vf~d-- 148 (286)
T cd01491 94 ------------------STGPL-----TTDELLKFQVVVLTDASLEDQLKINEFCHSPGIKFISADTRGLFGSIFCD-- 148 (286)
T ss_pred ------------------EeccC-----CHHHHhcCCEEEEecCCHHHHHHHHHHHHHcCCEEEEEeccccEEEEEec--
Confidence 33222 23678899999999999999999999999999999999999999999873
Q ss_pred CCCcceecCCC--CCCCCCCCccccCCCCCcchhhhhHhH
Q psy9783 241 GETKCYECDPK--PAAKTYPGCTIRNTPSEPIHCIVWAKH 278 (726)
Q Consensus 241 ~~t~cy~C~~~--~~~~~~p~Cti~~~p~~~~h~i~~a~~ 278 (726)
..+||.|... ..+.+++.|+|.+.+...+||+.-.++
T Consensus 149 -fg~~f~~~d~~ge~p~~~~i~~I~~~~~g~V~~~~~~~h 187 (286)
T cd01491 149 -FGDEFTVYDPNGEEPKSGMISSISKDNPGVVTCLDETRH 187 (286)
T ss_pred -CCCeEEEeCCCCCcCCccceeeeecCCceEEEEECCccc
Confidence 3478888632 356889999999999999999976554
No 15
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=100.00 E-value=3.3e-34 Score=311.57 Aligned_cols=178 Identities=24% Similarity=0.390 Sum_probs=155.1
Q ss_pred Ccccccc--cCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHH
Q psy9783 2 ATKIPGV--FEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVAR 79 (726)
Q Consensus 2 ~~~~~~~--~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~ 79 (726)
+.||+++ ||.++|++|++++|+||||||+||+++++|+++|||+|+|+|.|+|+.|||+|||||++.|+|++|+++++
T Consensus 9 Y~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~ 88 (355)
T PRK05597 9 YRRQIMLGEIGQQGQQSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAR 88 (355)
T ss_pred hhheechhhcCHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHH
Confidence 5799999 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcch
Q psy9783 80 NSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSK 159 (726)
Q Consensus 80 ~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk 159 (726)
++|+++||+++|..
T Consensus 89 ~~l~~~np~v~v~~------------------------------------------------------------------ 102 (355)
T PRK05597 89 EAMLALNPDVKVTV------------------------------------------------------------------ 102 (355)
T ss_pred HHHHHHCCCcEEEE------------------------------------------------------------------
Confidence 77777776665543
Q ss_pred hhhHHHHHHhhCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccceEEEEe
Q psy9783 160 AQVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIK 239 (726)
Q Consensus 160 ~~~ak~~~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~i~ 239 (726)
+...++.+ ...++++++|+||+|+||+.+|..+|++|+++++|+|.+++.|+.|++.++.
T Consensus 103 -------------------~~~~i~~~-~~~~~~~~~DvVvd~~d~~~~r~~~n~~c~~~~ip~v~~~~~g~~g~v~~~~ 162 (355)
T PRK05597 103 -------------------SVRRLTWS-NALDELRDADVILDGSDNFDTRHLASWAAARLGIPHVWASILGFDAQLSVFH 162 (355)
T ss_pred -------------------EEeecCHH-HHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEecCeEEEEEEc
Confidence 33333321 2246789999999999999999999999999999999999999999999999
Q ss_pred CCCCcceecCCCC--CCCCCCCccccCC
Q psy9783 240 KGETKCYECDPKP--AAKTYPGCTIRNT 265 (726)
Q Consensus 240 p~~t~cy~C~~~~--~~~~~p~Cti~~~ 265 (726)
|+.++||+|.... .....+.|+....
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~c~~~gv 190 (355)
T PRK05597 163 AGHGPIYEDLFPTPPPPGSVPSCSQAGV 190 (355)
T ss_pred CCCCCCHHHhCCCCCCccCCCCccccCc
Confidence 9889999998542 3346678865444
No 16
>PRK08328 hypothetical protein; Provisional
Probab=100.00 E-value=6.1e-34 Score=292.68 Aligned_cols=164 Identities=28% Similarity=0.372 Sum_probs=146.4
Q ss_pred CcccccccCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccCh-hHHHHHHH
Q psy9783 2 ATKIPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGK-SKAQVARN 80 (726)
Q Consensus 2 ~~~~~~~~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk-~Ka~va~~ 80 (726)
+.||+++||.+.|++|++++|+||||||+||+++++|+++||++|+|+|.|.|+.|||+||++|+++|+|+ +|++++++
T Consensus 10 y~Rq~~~~g~~~q~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~ 89 (231)
T PRK08328 10 YDRQIMIFGVEGQEKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKW 89 (231)
T ss_pred HhhHHHhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999 59999997
Q ss_pred HhhhcCCCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchh
Q psy9783 81 SALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKA 160 (726)
Q Consensus 81 ~l~~~np~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~ 160 (726)
++.++||+++|..
T Consensus 90 ~l~~~np~v~v~~------------------------------------------------------------------- 102 (231)
T PRK08328 90 KLERFNSDIKIET------------------------------------------------------------------- 102 (231)
T ss_pred HHHHhCCCCEEEE-------------------------------------------------------------------
Confidence 7777776665443
Q ss_pred hhHHHHHHhhCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccceEEEEeC
Q psy9783 161 QVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKK 240 (726)
Q Consensus 161 ~~ak~~~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~i~p 240 (726)
+...+.++. ...+++++|+|++|+||+++|..++++|+++++|+|.+++.|+.|++.++.|
T Consensus 103 ------------------~~~~~~~~~-~~~~l~~~D~Vid~~d~~~~r~~l~~~~~~~~ip~i~g~~~g~~G~v~~~~p 163 (231)
T PRK08328 103 ------------------FVGRLSEEN-IDEVLKGVDVIVDCLDNFETRYLLDDYAHKKGIPLVHGAVEGTYGQVTTIVP 163 (231)
T ss_pred ------------------EeccCCHHH-HHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeeccCEEEEEEECC
Confidence 333332211 2357889999999999999999999999999999999999999999999999
Q ss_pred CCCcceecCCC
Q psy9783 241 GETKCYECDPK 251 (726)
Q Consensus 241 ~~t~cy~C~~~ 251 (726)
+.|+||+|...
T Consensus 164 ~~~~c~~~~~~ 174 (231)
T PRK08328 164 GKTKRLREIFP 174 (231)
T ss_pred CCCCCHHHhCC
Confidence 99999999864
No 17
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=100.00 E-value=3.2e-33 Score=289.06 Aligned_cols=164 Identities=29% Similarity=0.541 Sum_probs=143.8
Q ss_pred Cccccccc--CHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHH
Q psy9783 2 ATKIPGVF--EKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVAR 79 (726)
Q Consensus 2 ~~~~~~~~--g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~ 79 (726)
+.||+++| |.++|++|++++|+|||+||+||+++++|+++||++|+|+|.|.|+.|||+||+||++.|||++|+++++
T Consensus 5 y~Rq~~l~~~g~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~ 84 (240)
T TIGR02355 5 YNRQIILRGFDFDGQEALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAK 84 (240)
T ss_pred eeeeeecccCCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHH
Confidence 67999996 5899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcch
Q psy9783 80 NSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSK 159 (726)
Q Consensus 80 ~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk 159 (726)
++++++||+++|..
T Consensus 85 ~~l~~inp~v~i~~------------------------------------------------------------------ 98 (240)
T TIGR02355 85 DALTQINPHIAINP------------------------------------------------------------------ 98 (240)
T ss_pred HHHHHHCCCcEEEE------------------------------------------------------------------
Confidence 88777777766554
Q ss_pred hhhHHHHHHhhCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccceEEEEe
Q psy9783 160 AQVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIK 239 (726)
Q Consensus 160 ~~~ak~~~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~i~ 239 (726)
+...+++ ....++++++|+||+|+||+++|.++|++|+.+++|+|.+++.|+.|++.++.
T Consensus 99 -------------------~~~~i~~-~~~~~~~~~~DlVvd~~D~~~~r~~ln~~~~~~~ip~v~~~~~g~~G~v~~~~ 158 (240)
T TIGR02355 99 -------------------INAKLDD-AELAALIAEHDIVVDCTDNVEVRNQLNRQCFAAKVPLVSGAAIRMEGQVSVFT 158 (240)
T ss_pred -------------------EeccCCH-HHHHHHhhcCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEecccEeEEEEEe
Confidence 3223322 11236788999999999999999999999999999999999999999998765
Q ss_pred -CCCCcceecCCC
Q psy9783 240 -KGETKCYECDPK 251 (726)
Q Consensus 240 -p~~t~cy~C~~~ 251 (726)
+..++||+|...
T Consensus 159 ~~~~~~c~~C~~~ 171 (240)
T TIGR02355 159 YQDGEPCYRCLSR 171 (240)
T ss_pred cCCCCCccccccc
Confidence 446799999843
No 18
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=100.00 E-value=3.3e-33 Score=307.37 Aligned_cols=175 Identities=30% Similarity=0.450 Sum_probs=150.4
Q ss_pred Ccccccc--cCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHH
Q psy9783 2 ATKIPGV--FEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVAR 79 (726)
Q Consensus 2 ~~~~~~~--~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~ 79 (726)
+.||+.+ ||.+.|++|++++|+||||||+||+++++|+++|||+|+|+|.|+||.|||+|||||++.|||++|+++++
T Consensus 23 y~Rq~~l~~~g~~~q~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~ 102 (392)
T PRK07878 23 YSRHLIIPDVGVDGQKRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSAR 102 (392)
T ss_pred hhheechhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHH
Confidence 5789888 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcch
Q psy9783 80 NSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSK 159 (726)
Q Consensus 80 ~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk 159 (726)
++|+++||+++|.
T Consensus 103 ~~l~~~np~v~i~------------------------------------------------------------------- 115 (392)
T PRK07878 103 DSIVEINPLVNVR------------------------------------------------------------------- 115 (392)
T ss_pred HHHHHhCCCcEEE-------------------------------------------------------------------
Confidence 7777666665544
Q ss_pred hhhHHHHHHhhCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccceEEEEe
Q psy9783 160 AQVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIK 239 (726)
Q Consensus 160 ~~~ak~~~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~i~ 239 (726)
++..+++.. ...++++++|+||+|+||+.+|.++|++|+.+++|+|.+++.|+.|++.++.
T Consensus 116 ------------------~~~~~i~~~-~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~~g~~G~v~~~~ 176 (392)
T PRK07878 116 ------------------LHEFRLDPS-NAVELFSQYDLILDGTDNFATRYLVNDAAVLAGKPYVWGSIYRFEGQASVFW 176 (392)
T ss_pred ------------------EEeccCChh-HHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccCEEEEEEEe
Confidence 344344321 2346789999999999999999999999999999999999999999999887
Q ss_pred C----CCCcceecCCCC--CCCCCCCccc
Q psy9783 240 K----GETKCYECDPKP--AAKTYPGCTI 262 (726)
Q Consensus 240 p----~~t~cy~C~~~~--~~~~~p~Cti 262 (726)
+ +.++||+|.... .....+.|.-
T Consensus 177 ~~~~~~~~~c~~c~~~~~~~~~~~~~~~~ 205 (392)
T PRK07878 177 EDAPDGLGLNYRDLYPEPPPPGMVPSCAE 205 (392)
T ss_pred cCCCCCCCCeeeeecCCCCCccCCCCCcc
Confidence 4 368999998542 2234566653
No 19
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=100.00 E-value=4.1e-33 Score=280.25 Aligned_cols=149 Identities=25% Similarity=0.440 Sum_probs=134.9
Q ss_pred CcccccccCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHHHH
Q psy9783 2 ATKIPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARNS 81 (726)
Q Consensus 2 ~~~~~~~~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~~~ 81 (726)
+.||+++||.+.|++|++++|+|||+||+|||++|+|+++||++|+|+|.|.|+.+||+|||||+.+|+|++|+++++++
T Consensus 4 Y~Rqi~l~G~e~Q~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~ 83 (197)
T cd01492 4 YDRQIRLWGLEAQKRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLER 83 (197)
T ss_pred hhHHHHHhCHHHHHHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hhhcCCCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchhh
Q psy9783 82 ALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQ 161 (726)
Q Consensus 82 l~~~np~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~~ 161 (726)
|+++||++++..
T Consensus 84 L~~lNp~v~i~~-------------------------------------------------------------------- 95 (197)
T cd01492 84 LRALNPRVKVSV-------------------------------------------------------------------- 95 (197)
T ss_pred HHHHCCCCEEEE--------------------------------------------------------------------
Confidence 777777765553
Q ss_pred hHHHHHHhhCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccceEEE
Q psy9783 162 VARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVEL 237 (726)
Q Consensus 162 ~ak~~~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~ 237 (726)
+...+. ....++++++|+||+|.|+.++|.++|++|+++++|+|.+++.|+.|++..
T Consensus 96 -----------------~~~~~~--~~~~~~~~~~dvVi~~~~~~~~~~~ln~~c~~~~ip~i~~~~~G~~G~v~~ 152 (197)
T cd01492 96 -----------------DTDDIS--EKPEEFFSQFDVVVATELSRAELVKINELCRKLGVKFYATGVHGLFGFVFA 152 (197)
T ss_pred -----------------EecCcc--ccHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEecCCEEEEEE
Confidence 333332 123578899999999999999999999999999999999999999999874
No 20
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=100.00 E-value=7.4e-33 Score=302.47 Aligned_cols=176 Identities=24% Similarity=0.455 Sum_probs=151.8
Q ss_pred Ccccccc--cCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHH
Q psy9783 2 ATKIPGV--FEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVAR 79 (726)
Q Consensus 2 ~~~~~~~--~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~ 79 (726)
+.||+++ ||.++|++|++++|+|||+||+||+++++|+++||++|+|+|.|.|+.|||+||+||+++|||++|+++++
T Consensus 22 y~Rqi~l~~~g~~~q~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~ 101 (370)
T PRK05600 22 TARQLALPGFGIEQQERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAA 101 (370)
T ss_pred hhcccchhhhCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHH
Confidence 6799999 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcch
Q psy9783 80 NSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSK 159 (726)
Q Consensus 80 ~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk 159 (726)
++++++||++++..
T Consensus 102 ~~l~~~np~v~i~~------------------------------------------------------------------ 115 (370)
T PRK05600 102 ERLKEIQPDIRVNA------------------------------------------------------------------ 115 (370)
T ss_pred HHHHHHCCCCeeEE------------------------------------------------------------------
Confidence 77777777665543
Q ss_pred hhhHHHHHHhhCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccceEEEEe
Q psy9783 160 AQVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIK 239 (726)
Q Consensus 160 ~~~ak~~~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~i~ 239 (726)
+...++. ....++++++|+||+|+||+++|..+|++|+.+++|+|.+++.|+.||+.++.
T Consensus 116 -------------------~~~~i~~-~~~~~~~~~~DlVid~~Dn~~~r~~in~~~~~~~iP~v~~~~~g~~G~v~v~~ 175 (370)
T PRK05600 116 -------------------LRERLTA-ENAVELLNGVDLVLDGSDSFATKFLVADAAEITGTPLVWGTVLRFHGELAVFN 175 (370)
T ss_pred -------------------eeeecCH-HHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEecCEEEEEEEe
Confidence 3333332 12246789999999999999999999999999999999999999999999988
Q ss_pred CCC---CcceecCCCC--CCCCCCCcccc
Q psy9783 240 KGE---TKCYECDPKP--AAKTYPGCTIR 263 (726)
Q Consensus 240 p~~---t~cy~C~~~~--~~~~~p~Cti~ 263 (726)
|+. ++||+|.+.. .....+.|...
T Consensus 176 ~~~~~~~~~~~~l~~~~~~~~~~~~c~~~ 204 (370)
T PRK05600 176 SGPDHRGVGLRDLFPEQPSGDSIPDCATA 204 (370)
T ss_pred cCCCCCCCCcHhhCCCCCccccCCCCccC
Confidence 753 6899998642 23345677433
No 21
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=100.00 E-value=2e-32 Score=275.45 Aligned_cols=152 Identities=26% Similarity=0.459 Sum_probs=135.7
Q ss_pred CcccccccCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCC--CccChhHHHHHH
Q psy9783 2 ATKIPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHK--QHVGKSKAQVAR 79 (726)
Q Consensus 2 ~~~~~~~~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~--~dvGk~Ka~va~ 79 (726)
+.||+++||.+.|++|++++|+|||+||+|||++|+|+++||++|+|+|.|.|+.+||+|||||++ .|+|++|+++++
T Consensus 2 y~Rqi~l~G~~~q~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~ 81 (198)
T cd01485 2 YDRQIRLWGDEAQNKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASY 81 (198)
T ss_pred ccceeeccCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHH
Confidence 689999999999999999999999999999999999999999999999999999999999999998 889999999999
Q ss_pred HHhhhcCCCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcch
Q psy9783 80 NSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSK 159 (726)
Q Consensus 80 ~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk 159 (726)
++|+++||++++....
T Consensus 82 ~~L~~lNp~v~i~~~~---------------------------------------------------------------- 97 (198)
T cd01485 82 EFLQELNPNVKLSIVE---------------------------------------------------------------- 97 (198)
T ss_pred HHHHHHCCCCEEEEEe----------------------------------------------------------------
Confidence 8888888777665432
Q ss_pred hhhHHHHHHhhCCCCeEEEEeccccc-ccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccceEEEE
Q psy9783 160 AQVARNSALNFNPDANIVAHHTSIIS-ADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELI 238 (726)
Q Consensus 160 ~~~ak~~~~~~np~~~i~~~~~~i~~-~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~i 238 (726)
..+.+ .....++++++|+||+|.|+..+|.++|++|+++++|+|.+++.|+.|++.+.
T Consensus 98 ---------------------~~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~ln~~c~~~~ip~i~~~~~G~~G~v~~~ 156 (198)
T cd01485 98 ---------------------EDSLSNDSNIEEYLQKFTLVIATEENYERTAKVNDVCRKHHIPFISCATYGLIGYAFFD 156 (198)
T ss_pred ---------------------cccccchhhHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeecCEEEEEEc
Confidence 22210 12235788999999999999999999999999999999999999999998743
No 22
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=100.00 E-value=2.4e-32 Score=295.27 Aligned_cols=175 Identities=26% Similarity=0.359 Sum_probs=150.0
Q ss_pred Ccccccc--cCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccC--hhHHHH
Q psy9783 2 ATKIPGV--FEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVG--KSKAQV 77 (726)
Q Consensus 2 ~~~~~~~--~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvG--k~Ka~v 77 (726)
+.||+++ ||.++|++|++++|+|||+||+||++|++|+++|||+|+|+|.|.||.|||+||+||+++|+| ++|+++
T Consensus 5 Y~Rq~~~~~~G~~~Q~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~a 84 (338)
T PRK12475 5 YSRQILFSGIGEEGQRKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIA 84 (338)
T ss_pred hhhhhchhhcCHHHHHhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHH
Confidence 6788887 899999999999999999999999999999999999999999999999999999999999985 899999
Q ss_pred HHHHhhhcCCCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCc
Q psy9783 78 ARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGK 157 (726)
Q Consensus 78 a~~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~ 157 (726)
++++++++||++++..
T Consensus 85 a~~~l~~inp~v~i~~---------------------------------------------------------------- 100 (338)
T PRK12475 85 AKEHLRKINSEVEIVP---------------------------------------------------------------- 100 (338)
T ss_pred HHHHHHHHCCCcEEEE----------------------------------------------------------------
Confidence 9977777777665543
Q ss_pred chhhhHHHHHHhhCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccceEEE
Q psy9783 158 SKAQVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVEL 237 (726)
Q Consensus 158 sk~~~ak~~~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~ 237 (726)
+...++.. .-.++++++|+||+|+||+++|..+|++|+.+++|+|.+++.|+.|++.+
T Consensus 101 ---------------------~~~~~~~~-~~~~~~~~~DlVid~~D~~~~r~~in~~~~~~~ip~i~~~~~g~~G~~~~ 158 (338)
T PRK12475 101 ---------------------VVTDVTVE-ELEELVKEVDLIIDATDNFDTRLLINDLSQKYNIPWIYGGCVGSYGVTYT 158 (338)
T ss_pred ---------------------EeccCCHH-HHHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEecccEEEEEE
Confidence 33333211 12356788999999999999999999999999999999999999999999
Q ss_pred EeCCCCcceecCCCCCCCCCCCccc
Q psy9783 238 IKKGETKCYECDPKPAAKTYPGCTI 262 (726)
Q Consensus 238 i~p~~t~cy~C~~~~~~~~~p~Cti 262 (726)
+.|+.|+||+|.....+..-+.|..
T Consensus 159 ~~P~~tpC~~Cl~~~~p~~~~~c~~ 183 (338)
T PRK12475 159 IIPGKTPCLRCLMEHVPVGGATCDT 183 (338)
T ss_pred ECCCCCCCHHHhcCCCCCCCCCCcc
Confidence 9999999999996533222345643
No 23
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=99.98 E-value=4.3e-32 Score=293.39 Aligned_cols=174 Identities=24% Similarity=0.324 Sum_probs=149.6
Q ss_pred Ccccccc--cCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccC--hhHHHH
Q psy9783 2 ATKIPGV--FEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVG--KSKAQV 77 (726)
Q Consensus 2 ~~~~~~~--~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvG--k~Ka~v 77 (726)
+.||+++ ||.++|++|++++|+||||||+||+++++|+++|||+|+|+|.|.||.|||+||+||+++|+| ++|+++
T Consensus 5 Y~Rq~~l~~~G~~~Q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~a 84 (339)
T PRK07688 5 YSRQELFSPIGEEGQQKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVA 84 (339)
T ss_pred hhhhhchhhcCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHH
Confidence 6788877 999999999999999999999999999999999999999999999999999999999999995 599999
Q ss_pred HHHHhhhcCCCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCc
Q psy9783 78 ARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGK 157 (726)
Q Consensus 78 a~~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~ 157 (726)
++++++++||++++..
T Consensus 85 a~~~l~~inp~v~v~~---------------------------------------------------------------- 100 (339)
T PRK07688 85 AKKRLEEINSDVRVEA---------------------------------------------------------------- 100 (339)
T ss_pred HHHHHHHHCCCcEEEE----------------------------------------------------------------
Confidence 9977777776665543
Q ss_pred chhhhHHHHHHhhCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccceEEE
Q psy9783 158 SKAQVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVEL 237 (726)
Q Consensus 158 sk~~~ak~~~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~ 237 (726)
+...++.. ...++++++|+||+|+||+++|.++|++|+.+++|+|.+++.|+.|++.+
T Consensus 101 ---------------------~~~~~~~~-~~~~~~~~~DlVid~~Dn~~~r~~ln~~~~~~~iP~i~~~~~g~~G~~~~ 158 (339)
T PRK07688 101 ---------------------IVQDVTAE-ELEELVTGVDLIIDATDNFETRFIVNDAAQKYGIPWIYGACVGSYGLSYT 158 (339)
T ss_pred ---------------------EeccCCHH-HHHHHHcCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeeeeeeeEEEE
Confidence 33333221 12356789999999999999999999999999999999999999999999
Q ss_pred EeCCCCcceecCCCCCCCCCCCcc
Q psy9783 238 IKKGETKCYECDPKPAAKTYPGCT 261 (726)
Q Consensus 238 i~p~~t~cy~C~~~~~~~~~p~Ct 261 (726)
+.|+.++||+|.....+...+.|.
T Consensus 159 ~~p~~~pC~~Cl~~~~~~~~~~c~ 182 (339)
T PRK07688 159 IIPGKTPCLRCLLQSIPLGGATCD 182 (339)
T ss_pred ECCCCCCCeEeecCCCCCCCCCCc
Confidence 999999999998653333335563
No 24
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.97 E-value=3.9e-31 Score=289.33 Aligned_cols=178 Identities=26% Similarity=0.447 Sum_probs=151.8
Q ss_pred Ccccccc--cCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHH
Q psy9783 2 ATKIPGV--FEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVAR 79 (726)
Q Consensus 2 ~~~~~~~--~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~ 79 (726)
++|++++ ||.+.|++|++++|+|||+||+||+++++|+++||++|+|+|.|.|+.|||+||+||++.|||++|+++++
T Consensus 116 y~r~i~l~~~g~~~q~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~ 195 (376)
T PRK08762 116 YSRHLRLPEVGEEGQRRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAA 195 (376)
T ss_pred HHHhcchhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHH
Confidence 4678888 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcch
Q psy9783 80 NSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSK 159 (726)
Q Consensus 80 ~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk 159 (726)
++++++||++++..
T Consensus 196 ~~l~~~np~v~v~~------------------------------------------------------------------ 209 (376)
T PRK08762 196 QRLAALNPDVQVEA------------------------------------------------------------------ 209 (376)
T ss_pred HHHHHHCCCCEEEE------------------------------------------------------------------
Confidence 87777777665543
Q ss_pred hhhHHHHHHhhCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccceEEEEe
Q psy9783 160 AQVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIK 239 (726)
Q Consensus 160 ~~~ak~~~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~i~ 239 (726)
+...+.+. ...++++++|+||+|+||+++|.++|++|+.+++|+|.+++.|+.|++.++.
T Consensus 210 -------------------~~~~~~~~-~~~~~~~~~D~Vv~~~d~~~~r~~ln~~~~~~~ip~i~~~~~g~~g~v~~~~ 269 (376)
T PRK08762 210 -------------------VQERVTSD-NVEALLQDVDVVVDGADNFPTRYLLNDACVKLGKPLVYGAVFRFEGQVSVFD 269 (376)
T ss_pred -------------------EeccCChH-HHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccCEEEEEEEe
Confidence 22222221 1135678899999999999999999999999999999999999999999999
Q ss_pred CCC----CcceecCCCC--CCCCCCCccccCC
Q psy9783 240 KGE----TKCYECDPKP--AAKTYPGCTIRNT 265 (726)
Q Consensus 240 p~~----t~cy~C~~~~--~~~~~p~Cti~~~ 265 (726)
|+. ++||+|.... .....|.|.....
T Consensus 270 p~~~~~~~~c~~c~~~~~~~~~~~~~~~~~gv 301 (376)
T PRK08762 270 AGRQRGQAPCYRCLFPEPPPPELAPSCAEAGV 301 (376)
T ss_pred CCCCCCCCCCHhhcCCCCCCcccCCCCccCCc
Confidence 876 8999998532 2234567765443
No 25
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=99.97 E-value=5.6e-31 Score=273.20 Aligned_cols=165 Identities=37% Similarity=0.605 Sum_probs=146.7
Q ss_pred Cccccccc--CHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHH
Q psy9783 2 ATKIPGVF--EKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVAR 79 (726)
Q Consensus 2 ~~~~~~~~--g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~ 79 (726)
+.||+.++ |.++|++|+.++|+|||+||+||+++++|+++|+|+++|+|.|+|+.|||+||++|+..|+|++|+++++
T Consensus 11 y~Rqi~l~~~~~~~q~~l~~s~vlvvG~GglG~~~~~~la~aGvg~l~i~D~d~v~~snL~rq~~~~~~dig~~Ka~~a~ 90 (254)
T COG0476 11 YSRQILLPGIGGEGQQKLKDSRVLVVGAGGLGSPAAKYLALAGVGKLTIVDFDTVELSNLQRQFLFTEADVGKPKAEVAA 90 (254)
T ss_pred hcceeeecccCHHHHHHHhhCCEEEEecChhHHHHHHHHHHcCCCeEEEEcCCcccccccCceeeecccccCCcHHHHHH
Confidence 57888884 4555999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcch
Q psy9783 80 NSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSK 159 (726)
Q Consensus 80 ~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk 159 (726)
+++.++||+
T Consensus 91 ~~l~~ln~~----------------------------------------------------------------------- 99 (254)
T COG0476 91 KALRKLNPL----------------------------------------------------------------------- 99 (254)
T ss_pred HHHHHhCCC-----------------------------------------------------------------------
Confidence 555555554
Q ss_pred hhhHHHHHHhhCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccceEEEEe
Q psy9783 160 AQVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIK 239 (726)
Q Consensus 160 ~~~ak~~~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~i~ 239 (726)
+.+++++..+..... ..++.++|+|++|+||+.+|..+|+.|+.+++|++++++.|+.|++.++.
T Consensus 100 --------------v~v~~~~~~l~~~~~-~~~~~~~d~v~d~~dn~~~r~~iN~~~~~~~~pli~~~~~~~~g~~~~~~ 164 (254)
T COG0476 100 --------------VEVVAYLERLDEENA-EELIAQFDVVLDCTDNFETRYLINDACVKLGIPLVHGGAIGFEGQVTVII 164 (254)
T ss_pred --------------CeEEEeecccChhhH-HHHhccCCEEEECCCCHHHHHHHHHHHHHhCCCeEeeeeccceEEEEEEe
Confidence 455555555554444 68899999999999999999999999999999999999999999999999
Q ss_pred CC-CCcceecCCCC
Q psy9783 240 KG-ETKCYECDPKP 252 (726)
Q Consensus 240 p~-~t~cy~C~~~~ 252 (726)
|+ .++||+|....
T Consensus 165 ~~~~~~c~~~~~~~ 178 (254)
T COG0476 165 PGDKTPCYRCLFPE 178 (254)
T ss_pred cCCCCCcccccCCC
Confidence 99 59999999653
No 26
>PRK14851 hypothetical protein; Provisional
Probab=99.97 E-value=3.2e-30 Score=299.45 Aligned_cols=163 Identities=23% Similarity=0.371 Sum_probs=145.3
Q ss_pred CcccccccCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHHHH
Q psy9783 2 ATKIPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARNS 81 (726)
Q Consensus 2 ~~~~~~~~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~~~ 81 (726)
+.|++++||.+.|++|++++|+|||+||+||+++++|+++|||+|+|+|.|+||+||||||++|+..|||++|+++++++
T Consensus 26 y~R~~~l~g~e~Q~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~ 105 (679)
T PRK14851 26 FSRNIGLFTPGEQERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQ 105 (679)
T ss_pred hhhhHHhcCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred hhhcCCCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchhh
Q psy9783 82 ALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQ 161 (726)
Q Consensus 82 l~~~np~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~~ 161 (726)
++++||.++|
T Consensus 106 l~~inP~~~I---------------------------------------------------------------------- 115 (679)
T PRK14851 106 ALSINPFLEI---------------------------------------------------------------------- 115 (679)
T ss_pred HHHhCCCCeE----------------------------------------------------------------------
Confidence 6666665544
Q ss_pred hHHHHHHhhCCCCeEEEEecccccccccccccccccEEEEccCc--HHHHHHHHHHhhhcCCcEEEEccCCccceEEEEe
Q psy9783 162 VARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDN--RAARNHVNRMCLASEVPLIESGTAGYEGQVELIK 239 (726)
Q Consensus 162 ~ak~~~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn--~~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~i~ 239 (726)
++++..|+.. .-..|++++|+||+|+|| +++|.+++..|+.++||+|.+|+.|+.|++.++.
T Consensus 116 ---------------~~~~~~i~~~-n~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g~~G~~g~~~~~~ 179 (679)
T PRK14851 116 ---------------TPFPAGINAD-NMDAFLDGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAGPLGYSSAMLVFT 179 (679)
T ss_pred ---------------EEEecCCChH-HHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeecccccceEEEEc
Confidence 4444444432 224788999999999997 5789999999999999999999999999999999
Q ss_pred CCCCcceecCCC
Q psy9783 240 KGETKCYECDPK 251 (726)
Q Consensus 240 p~~t~cy~C~~~ 251 (726)
|+ +.||+|.++
T Consensus 180 p~-~~~~~~~~~ 190 (679)
T PRK14851 180 PQ-GMGFDDYFN 190 (679)
T ss_pred CC-CCCHhHhcc
Confidence 97 789988765
No 27
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=99.96 E-value=1e-29 Score=289.24 Aligned_cols=207 Identities=21% Similarity=0.262 Sum_probs=156.6
Q ss_pred cccCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCcc---ChhHHHHHHHHhh
Q psy9783 7 GVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHV---GKSKAQVARNSAL 83 (726)
Q Consensus 7 ~~~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dv---Gk~Ka~va~~~l~ 83 (726)
|+++.-..++|+++|||||||||+||++|++|+++|||+|+|||.|+|+.|||+||+||+.+|+ |++||++|+++|+
T Consensus 326 RllP~l~~ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk 405 (664)
T TIGR01381 326 RLHPDLQLERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKALK 405 (664)
T ss_pred hcCChhhHHHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEECCCccccccccchhhhhhcCCcHHHHHHHHHH
Confidence 5667777799999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred hcCCCCceeee-eccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchhhh
Q psy9783 84 NFNPDANIYYQ-VDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQV 162 (726)
Q Consensus 84 ~~np~~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~~~ 162 (726)
++||++++... ....++++.+... ..
T Consensus 406 ~InP~v~i~~~~~~Ipm~Gh~i~~~---------------------------------------------------~~-- 432 (664)
T TIGR01381 406 RIFPSIQATGHRLTVPMPGHPIDEK---------------------------------------------------DV-- 432 (664)
T ss_pred HHCCCcEEEEeeeeeccccccCCch---------------------------------------------------hh--
Confidence 99999988743 2222332221100 00
Q ss_pred HHHHHHhhCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccceEEEEeC--
Q psy9783 163 ARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKK-- 240 (726)
Q Consensus 163 ak~~~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~i~p-- 240 (726)
+... .+...-..+++++|+|++|+||+++|..++.+|..+++|+|+++ .|+.|++.+...
T Consensus 433 --~~~~---------------~d~~~l~~Li~~~DvV~d~tDn~esR~L~n~~c~~~~kplI~aA-lGfdg~lvmrhG~~ 494 (664)
T TIGR01381 433 --PELE---------------KDIARLEQLIKDHDVVFLLLDSREARWLPTVLCSRHKKIAISAA-LGFDSYVVMRHGIG 494 (664)
T ss_pred --hhcc---------------ccHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEE-eccceEEEEEeccc
Confidence 0000 00011246789999999999999999999999999999999986 899999887622
Q ss_pred ----------------CCCcceecCCC---CCCCCC----CCccccCCCCCcchhhhhHhHHhHHHHH
Q psy9783 241 ----------------GETKCYECDPK---PAAKTY----PGCTIRNTPSEPIHCIVWAKHLFNYLER 285 (726)
Q Consensus 241 ----------------~~t~cy~C~~~---~~~~~~----p~Cti~~~p~~~~h~i~~a~~lf~~lf~ 285 (726)
...+||.|..- ...... +.||+...--.++-.. .|-+++..+..
T Consensus 495 ~~~~~~~~~~~~~~~~~~~gCYfC~Dv~aP~~s~~~rtlDqqCtVtrPgv~~ias~-~AvEll~~llq 561 (664)
T TIGR01381 495 RSESVSDVSSSDSVPYSRLGCYFCNDVTAPGDSTTDRTLDQQCTVTRPGTAMIASG-LAVELLVSVLQ 561 (664)
T ss_pred ccccccccccccccCCCCCCccccCCCCCCCcccccccccccceEecchHHHHHHH-HHHHHHHHHhc
Confidence 14789999932 222222 6899766555444333 34555555554
No 28
>PRK14852 hypothetical protein; Provisional
Probab=99.96 E-value=9.1e-30 Score=300.46 Aligned_cols=163 Identities=23% Similarity=0.356 Sum_probs=145.0
Q ss_pred CcccccccCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHHHH
Q psy9783 2 ATKIPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARNS 81 (726)
Q Consensus 2 ~~~~~~~~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~~~ 81 (726)
+.||+++||.+.|++|++++|+||||||+||+++++|+++|||+|+|+|.|+||.||||||++|+..|||++|+++++++
T Consensus 315 y~Rqi~lig~e~Q~kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~ 394 (989)
T PRK14852 315 FSRNLGLVDYAGQRRLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTER 394 (989)
T ss_pred hhchHhhcCHHHHHHHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999977
Q ss_pred hhhcCCCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchhh
Q psy9783 82 ALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQ 161 (726)
Q Consensus 82 l~~~np~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~~ 161 (726)
++++||+++|..
T Consensus 395 l~~INP~v~I~~-------------------------------------------------------------------- 406 (989)
T PRK14852 395 ALSVNPFLDIRS-------------------------------------------------------------------- 406 (989)
T ss_pred HHHHCCCCeEEE--------------------------------------------------------------------
Confidence 777777666554
Q ss_pred hHHHHHHhhCCCCeEEEEecccccccccccccccccEEEEccCcH--HHHHHHHHHhhhcCCcEEEEccCCccceEEEEe
Q psy9783 162 VARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNR--AARNHVNRMCLASEVPLIESGTAGYEGQVELIK 239 (726)
Q Consensus 162 ~ak~~~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~--~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~i~ 239 (726)
+...++. +...+|++++|+||+|+|++ ++|.+++..|++++||+|.+|+.|+.|++.++.
T Consensus 407 -----------------~~~~I~~-en~~~fl~~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag~~G~~g~v~v~~ 468 (989)
T PRK14852 407 -----------------FPEGVAA-ETIDAFLKDVDLLVDGIDFFALDIRRRLFNRALELGIPVITAGPLGYSCALLVFM 468 (989)
T ss_pred -----------------EecCCCH-HHHHHHhhCCCEEEECCCCccHHHHHHHHHHHHHcCCCEEEeeccccCeeEEEEc
Confidence 3333322 22357889999999999984 578899999999999999999999999999999
Q ss_pred CCCCcceecCCC
Q psy9783 240 KGETKCYECDPK 251 (726)
Q Consensus 240 p~~t~cy~C~~~ 251 (726)
|+. .||+|.++
T Consensus 469 p~~-~~~~~~f~ 479 (989)
T PRK14852 469 PGG-MNFDSYFG 479 (989)
T ss_pred CCC-CCHHHhCC
Confidence 864 99999865
No 29
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=99.96 E-value=5.2e-29 Score=276.11 Aligned_cols=166 Identities=23% Similarity=0.361 Sum_probs=147.1
Q ss_pred CcccccccCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHHHH
Q psy9783 2 ATKIPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARNS 81 (726)
Q Consensus 2 ~~~~~~~~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~~~ 81 (726)
+.||+|+||.++|++|.+++|+|||+||+|||++|||+++|||+|+|+|.|.|+.+||+||||++.+|+|++||++++++
T Consensus 3 YDRQlrLwG~~gQ~~L~~s~VlliG~gglGsEilKNLvL~GIg~~tIvD~~~V~~sDL~~nFfl~~~diGk~kA~~~~~~ 82 (425)
T cd01493 3 YDRQLRLWGEHGQAALESAHVCLLNATATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEATCEL 82 (425)
T ss_pred chHHHHHhHHHHHHHHhhCeEEEEcCcHHHHHHHHHHHHcCCCeEEEECCCcCchhhccccccCChhhcCcHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchhh
Q psy9783 82 ALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQ 161 (726)
Q Consensus 82 l~~~np~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~~ 161 (726)
|+++||++++.+.....
T Consensus 83 L~eLNp~V~i~~~~e~~--------------------------------------------------------------- 99 (425)
T cd01493 83 LQELNPDVNGSAVEESP--------------------------------------------------------------- 99 (425)
T ss_pred HHHHCCCCEEEEEeccc---------------------------------------------------------------
Confidence 99999988776532210
Q ss_pred hHHHHHHhhCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccceEEEEeCC
Q psy9783 162 VARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKKG 241 (726)
Q Consensus 162 ~ak~~~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~i~p~ 241 (726)
+.+. ..+.+||.+||+||.+.++...+..++++|+.+++|+|.+++.|+.|++.+..|.
T Consensus 100 ---~~ll------------------~~~~~f~~~fdiVI~t~~~~~~~~~L~~~c~~~~iPlI~~~s~G~~G~v~v~~~~ 158 (425)
T cd01493 100 ---EALL------------------DNDPSFFSQFTVVIATNLPESTLLRLADVLWSANIPLLYVRSYGLYGYIRIQLKE 158 (425)
T ss_pred ---chhh------------------hhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEecccCEEEEEEEECC
Confidence 0000 1135789999999999999999999999999999999999999999999999984
Q ss_pred CCcceecCCCC
Q psy9783 242 ETKCYECDPKP 252 (726)
Q Consensus 242 ~t~cy~C~~~~ 252 (726)
..+.++.+++
T Consensus 159 -h~i~et~p~~ 168 (425)
T cd01493 159 -HTIVESHPDN 168 (425)
T ss_pred -eEEEECCCCC
Confidence 4577887664
No 30
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=99.96 E-value=6.9e-29 Score=257.07 Aligned_cols=164 Identities=24% Similarity=0.324 Sum_probs=133.8
Q ss_pred HhcCcEEEEcCchHHHHHHHHHHHhCC-----C-----eEEEEeCCccCccCCCcCCCCCCCccChhHHHHHHHHhhhcC
Q psy9783 17 IKKSKVLVVGAGGIGCELLKNLVLSGF-----S-----NIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARNSALNFN 86 (726)
Q Consensus 17 L~~~kVlvVGaGgiGceiaknLal~Gv-----~-----~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~~~l~~~n 86 (726)
-+..+|+||||||+||+++++||++|+ | +|+|+|+|+|+.|||||| +|...|||++|++++++++..++
T Consensus 9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQ-lf~~~dVG~~Ka~v~~~ri~~~~ 87 (244)
T TIGR03736 9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQ-AFYPADVGQNKAIVLVNRLNQAM 87 (244)
T ss_pred hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhcc-cCChhHCCcHHHHHHHHHHHhcc
Confidence 478899999999999999999999973 4 999999999999999999 57889999999999997665444
Q ss_pred CCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchhhhHHHH
Q psy9783 87 PDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNS 166 (726)
Q Consensus 87 p~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~~~ak~~ 166 (726)
T Consensus 88 -------------------------------------------------------------------------------- 87 (244)
T TIGR03736 88 -------------------------------------------------------------------------------- 87 (244)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhhh--c-CCcEEEEccC--------Cc----
Q psy9783 167 ALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLA--S-EVPLIESGTA--------GY---- 231 (726)
Q Consensus 167 ~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~--~-~iPlI~sg~~--------G~---- 231 (726)
+++|+++...+.. ..++.++|+||+|+||+++|.++++.|.+ + .+|||++|+. |.
T Consensus 88 ------~~~i~a~~~~~~~----~~~~~~~DiVi~avDn~~aR~~l~~~~~~~~~~~~~~ld~Gn~~~~gqv~~g~i~~~ 157 (244)
T TIGR03736 88 ------GTDWTAHPERVER----SSTLHRPDIVIGCVDNRAARLAILRAFEGGYSGYAYWLDLGNRADDGQVILGQVPSR 157 (244)
T ss_pred ------CceEEEEEeeeCc----hhhhcCCCEEEECCCCHHHHHHHHHHHHHhcccccceecccCCCCCCcEEEEecccc
Confidence 2345555555443 13356899999999999999999999988 3 4899999994 44
Q ss_pred -cceEEEEeCCCCcceecCCCC---CCCCCCCccccCCCCCcchh
Q psy9783 232 -EGQVELIKKGETKCYECDPKP---AAKTYPGCTIRNTPSEPIHC 272 (726)
Q Consensus 232 -~G~v~~i~p~~t~cy~C~~~~---~~~~~p~Cti~~~p~~~~h~ 272 (726)
+|+.+++.|+.|+||.|..++ ++.+.|+||+..--. |.++
T Consensus 158 ~k~~~~~~lP~vte~y~~~~d~~~~~~~~~PsCsla~al~-~Q~l 201 (244)
T TIGR03736 158 AKGENRLRLPHVGELFPELIDPSVDPDDDRPSCSLAEALA-KQSL 201 (244)
T ss_pred cccCCceecCCchhhCcccccCccCCCCCCCCchHHHHhc-Cchh
Confidence 566677889999999998776 567899999886533 4443
No 31
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=99.96 E-value=1.7e-28 Score=231.37 Aligned_cols=134 Identities=37% Similarity=0.657 Sum_probs=114.2
Q ss_pred hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHHHHhhhcCCCCceeeeecc
Q psy9783 18 KKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIYYQVDF 97 (726)
Q Consensus 18 ~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~~~l~~~np~~~v~~~~~~ 97 (726)
+++||+|+|+||+||+++++|+++|+++|+|+|.|.|+.+||+||+||+.+|+|++|+++++++++++||++++..
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~---- 76 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEA---- 76 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEE----
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeee----
Confidence 5789999999999999999999999999999999999999999999999999999999999977777777665554
Q ss_pred ccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchhhhHHHHHHhhCCCCeEE
Q psy9783 98 HLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIV 177 (726)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~~~ak~~~~~~np~~~i~ 177 (726)
T Consensus 77 -------------------------------------------------------------------------------- 76 (135)
T PF00899_consen 77 -------------------------------------------------------------------------------- 76 (135)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecccccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccceEEE
Q psy9783 178 AHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVEL 237 (726)
Q Consensus 178 ~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~ 237 (726)
+..++.+ .....+++++|+||+|+|+.++|.+++++|+.+++|+|++++.|+.|++..
T Consensus 77 -~~~~~~~-~~~~~~~~~~d~vi~~~d~~~~~~~l~~~~~~~~~p~i~~~~~g~~G~~~~ 134 (135)
T PF00899_consen 77 -IPEKIDE-ENIEELLKDYDIVIDCVDSLAARLLLNEICREYGIPFIDAGVNGFYGQVVM 134 (135)
T ss_dssp -EESHCSH-HHHHHHHHTSSEEEEESSSHHHHHHHHHHHHHTT-EEEEEEEETTEEEEEE
T ss_pred -eeccccc-ccccccccCCCEEEEecCCHHHHHHHHHHHHHcCCCEEEEEeecCEEEEEE
Confidence 3333322 123466789999999999999999999999999999999999999999854
No 32
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=99.95 E-value=2.8e-28 Score=251.07 Aligned_cols=141 Identities=26% Similarity=0.384 Sum_probs=122.2
Q ss_pred cCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHHHHhhhcCCC
Q psy9783 9 FEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARNSALNFNPD 88 (726)
Q Consensus 9 ~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~~~l~~~np~ 88 (726)
||.+.|++|++++|+|||+||+||+++++|+++||++|+|+|.|.|++||||||+++..+|||++|+++++++++++||+
T Consensus 1 ~G~e~~~~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~ 80 (231)
T cd00755 1 YGEEGLEKLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPE 80 (231)
T ss_pred CCHHHHHHHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999888888888
Q ss_pred CceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchhhhHHHHHH
Q psy9783 89 ANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSAL 168 (726)
Q Consensus 89 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~~~ak~~~~ 168 (726)
++|.....+
T Consensus 81 ~~V~~~~~~----------------------------------------------------------------------- 89 (231)
T cd00755 81 CEVDAVEEF----------------------------------------------------------------------- 89 (231)
T ss_pred cEEEEeeee-----------------------------------------------------------------------
Confidence 777654333
Q ss_pred hhCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccce
Q psy9783 169 NFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQ 234 (726)
Q Consensus 169 ~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~ 234 (726)
++.+.....+..++|+||+|+|+..++..++++|+.+++|+|.++..|-+..
T Consensus 90 --------------i~~~~~~~l~~~~~D~VvdaiD~~~~k~~L~~~c~~~~ip~I~s~g~g~~~d 141 (231)
T cd00755 90 --------------LTPDNSEDLLGGDPDFVVDAIDSIRAKVALIAYCRKRKIPVISSMGAGGKLD 141 (231)
T ss_pred --------------cCHhHHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeCCcCCCC
Confidence 2111111222356999999999999999999999999999999987776543
No 33
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=99.95 E-value=2.7e-28 Score=258.02 Aligned_cols=193 Identities=23% Similarity=0.316 Sum_probs=144.0
Q ss_pred cEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCc--cChhHHHHHHHHhhhcCCCCceeeee-cc
Q psy9783 21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQH--VGKSKAQVARNSALNFNPDANIYYQV-DF 97 (726)
Q Consensus 21 kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~d--vGk~Ka~va~~~l~~~np~~~v~~~~-~~ 97 (726)
||+||||||+||++|++|+++|||+|+|+|.|+|+.|||+||+||+.+| +|++|+++|+++|+++||++++.... ..
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~~I 80 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLSI 80 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEEeeeec
Confidence 6999999999999999999999999999999999999999999999999 99999999999999999999987532 22
Q ss_pred ccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchhhhHHHHHHhhCCCCeEE
Q psy9783 98 HLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIV 177 (726)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~~~ak~~~~~~np~~~i~ 177 (726)
.++++.+. .. + . +. .
T Consensus 81 pmpgh~~~---------------------------------------------------~~------~-~----~~--~- 95 (307)
T cd01486 81 PMPGHPIS---------------------------------------------------ES------E-V----PS--T- 95 (307)
T ss_pred cccccccc---------------------------------------------------cc------c-c----cc--c-
Confidence 22222110 00 0 0 00 0
Q ss_pred EEecccccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccceEEEEeCC----------------
Q psy9783 178 AHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKKG---------------- 241 (726)
Q Consensus 178 ~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~i~p~---------------- 241 (726)
..+...-.++++++|+|++|+||+++|+.++.+|..+++|+|++ ..|+.|++.+-...
T Consensus 96 -----~~~~~~l~~li~~~DvV~d~tDn~esR~L~~~~~~~~~k~~I~a-alGfdg~lvmrhg~~~~~~~~~~~~~~~~~ 169 (307)
T cd01486 96 -----LKDVKRLEELIKDHDVIFLLTDSRESRWLPTLLSAAKNKLVINA-ALGFDSYLVMRHGAGPQSQSGSGDSSSDSI 169 (307)
T ss_pred -----ccCHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHHhCCcEEEE-EeccceEEEEEeCCCccccccccccccccc
Confidence 00111224778999999999999999999999999999999985 68999998775532
Q ss_pred ---CCcceecCCCCCC-------CCCCCccccCCCCCcchhhhhHhHHhHHHHH
Q psy9783 242 ---ETKCYECDPKPAA-------KTYPGCTIRNTPSEPIHCIVWAKHLFNYLER 285 (726)
Q Consensus 242 ---~t~cy~C~~~~~~-------~~~p~Cti~~~p~~~~h~i~~a~~lf~~lf~ 285 (726)
...||.|..--.+ .--..||.+..--.++-. ..|-+|+-.+..
T Consensus 170 ~~~~lgCYfCnDv~ap~~s~~drtlDqqctvtrpG~a~ias-~~avEl~~s~lq 222 (307)
T cd01486 170 PGSRLGCYFCNDVVAPGDSLKDRTLDQQCTVTRPGLSMIAS-SIAVELLVSLLQ 222 (307)
T ss_pred CCCCcceeeeCCEecCCCCCCCcccCcccceecCchHHHHH-HHHHHHHHHHHc
Confidence 3579999954222 223679988765544422 234444444433
No 34
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=99.95 E-value=6.9e-28 Score=245.07 Aligned_cols=158 Identities=28% Similarity=0.409 Sum_probs=131.2
Q ss_pred ccccccCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHHHHhh
Q psy9783 4 KIPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARNSAL 83 (726)
Q Consensus 4 ~~~~~~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~~~l~ 83 (726)
++.+.||.+.|++|++++|+||||||+||+++++|+++|+++|+|+|.|.|+.+||+||++| .+|+|++|++++++++.
T Consensus 13 ~~~~~~g~~~q~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~-~~dvG~~Ka~~a~~~l~ 91 (212)
T PRK08644 13 MLASRHTPKLLEKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYF-ISQIGMPKVEALKENLL 91 (212)
T ss_pred HHHhhcCHHHHHHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEee-hhhCCChHHHHHHHHHH
Confidence 45677999999999999999999999999999999999999999999999999999999976 78999999999997777
Q ss_pred hcCCCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchhhhH
Q psy9783 84 NFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVA 163 (726)
Q Consensus 84 ~~np~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~~~a 163 (726)
++||++++..
T Consensus 92 ~lnp~v~v~~---------------------------------------------------------------------- 101 (212)
T PRK08644 92 EINPFVEIEA---------------------------------------------------------------------- 101 (212)
T ss_pred HHCCCCEEEE----------------------------------------------------------------------
Confidence 7776665543
Q ss_pred HHHHHhhCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhhhc-CCcEEEEccCCccceEEEEeCCC
Q psy9783 164 RNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLAS-EVPLIESGTAGYEGQVELIKKGE 242 (726)
Q Consensus 164 k~~~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~-~iPlI~sg~~G~~G~v~~i~p~~ 242 (726)
+...+++. ...++++++|+||+|+||+++|..+++.|.++ ++|+|.++..|..|++..+.+..
T Consensus 102 ---------------~~~~i~~~-~~~~~~~~~DvVI~a~D~~~~r~~l~~~~~~~~~~p~I~~~~~~~~~~~~~~~~~~ 165 (212)
T PRK08644 102 ---------------HNEKIDED-NIEELFKDCDIVVEAFDNAETKAMLVETVLEHPGKKLVAASGMAGYGDSNSIKTRR 165 (212)
T ss_pred ---------------EeeecCHH-HHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhCCCCEEEeehhhccCCceEEEecC
Confidence 33333321 12367889999999999999999999999999 99999876666667766555533
Q ss_pred --Ccceec
Q psy9783 243 --TKCYEC 248 (726)
Q Consensus 243 --t~cy~C 248 (726)
..||.|
T Consensus 166 ~~~~~~~~ 173 (212)
T PRK08644 166 IGKNFYIV 173 (212)
T ss_pred CCCCeeEC
Confidence 456654
No 35
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=99.95 E-value=1.1e-27 Score=251.18 Aligned_cols=145 Identities=26% Similarity=0.466 Sum_probs=126.5
Q ss_pred CcccccccCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHHHH
Q psy9783 2 ATKIPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARNS 81 (726)
Q Consensus 2 ~~~~~~~~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~~~ 81 (726)
+.|+.++||.++|++|++++|+|||+||+||+++++|+++||++|+|+|.|.|+.||||||+++..++||++|+++++++
T Consensus 13 f~R~~~L~G~e~~~kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~r 92 (268)
T PRK15116 13 FGGTARLYGEKALQLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAER 92 (268)
T ss_pred HhhHHHHhCHHHHHHhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchhh
Q psy9783 82 ALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQ 161 (726)
Q Consensus 82 l~~~np~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~~ 161 (726)
+.++||+++|.....++++
T Consensus 93 l~~INP~~~V~~i~~~i~~------------------------------------------------------------- 111 (268)
T PRK15116 93 IRQINPECRVTVVDDFITP------------------------------------------------------------- 111 (268)
T ss_pred HHhHCCCcEEEEEecccCh-------------------------------------------------------------
Confidence 9988888877654333211
Q ss_pred hHHHHHHhhCCCCeEEEEeccccccccccccc-ccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCcc
Q psy9783 162 VARNSALNFNPDANIVAHHTSIISADFGVNYF-KQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYE 232 (726)
Q Consensus 162 ~ak~~~~~~np~~~i~~~~~~i~~~~~~~~~~-~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~ 232 (726)
+.. ..++ .++|+||+|+|++.++..++++|+.+++|+|.+|..|-.
T Consensus 112 ------------------------e~~-~~ll~~~~D~VIdaiD~~~~k~~L~~~c~~~~ip~I~~gGag~k 158 (268)
T PRK15116 112 ------------------------DNV-AEYMSAGFSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGAGGQ 158 (268)
T ss_pred ------------------------hhH-HHHhcCCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEECCcccC
Confidence 001 1223 479999999999999999999999999999999766543
No 36
>KOG2017|consensus
Probab=99.95 E-value=1.8e-28 Score=258.62 Aligned_cols=168 Identities=30% Similarity=0.516 Sum_probs=147.3
Q ss_pred ccCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHHHHhhhcCC
Q psy9783 8 VFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARNSALNFNP 87 (726)
Q Consensus 8 ~~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~~~l~~~np 87 (726)
=||..+|.+|++++||||||||+||-.+..|+.+|+|+|-|+|.|.||.|||.||.++++..+|+.||+.|+..++.+||
T Consensus 55 e~gV~GQ~~Lk~s~VLVVGaGGLGcPa~~YLaaaGvG~lGiVD~DvVe~sNlhRQVlh~ea~vg~~Ka~sA~~~lr~lNs 134 (427)
T KOG2017|consen 55 EFGVHGQLSLKNSSVLVVGAGGLGCPAAQYLAAAGVGRLGIVDYDVVELSNLHRQVLHTEARVGMHKAESAAAFLRRLNS 134 (427)
T ss_pred ccccccccccCCccEEEEccCCCCCHHHHHHHHcCCCeecccccceeehhhHHHHHhhhhhhhhhHHHHHHHHHHHhcCC
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999988888888
Q ss_pred CCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchhhhHHHHH
Q psy9783 88 DANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSA 167 (726)
Q Consensus 88 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~~~ak~~~ 167 (726)
+++|..+..++.
T Consensus 135 ~v~v~~y~~~L~-------------------------------------------------------------------- 146 (427)
T KOG2017|consen 135 HVEVQTYNEFLS-------------------------------------------------------------------- 146 (427)
T ss_pred Cceeeechhhcc--------------------------------------------------------------------
Confidence 877665433321
Q ss_pred HhhCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccceEEEEeCCCCccee
Q psy9783 168 LNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKKGETKCYE 247 (726)
Q Consensus 168 ~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~i~p~~t~cy~ 247 (726)
+ ....+++++||+|++|+||...|..++..|+..++|+|.+...++.||+++......+||+
T Consensus 147 -----------------~-sNa~~Ii~~YdvVlDCTDN~~TRYLisD~CVlLgkpLVSgSaLr~EGQLtvYny~~GPCYR 208 (427)
T KOG2017|consen 147 -----------------S-SNAFDIIKQYDVVLDCTDNVPTRYLISDVCVLLGKPLVSGSALRWEGQLTVYNYNNGPCYR 208 (427)
T ss_pred -----------------c-hhHHHHhhccceEEEcCCCccchhhhhhHHHHcCCcccccccccccceeEEeecCCCceee
Confidence 1 1224678999999999999999999999999999999999999999999999998999999
Q ss_pred cCCC-C-CCCCCCCcc
Q psy9783 248 CDPK-P-AAKTYPGCT 261 (726)
Q Consensus 248 C~~~-~-~~~~~p~Ct 261 (726)
|.+. | ++.....|.
T Consensus 209 ClFP~Ppp~~~vt~C~ 224 (427)
T KOG2017|consen 209 CLFPNPPPPEAVTNCA 224 (427)
T ss_pred ecCCCCcChHHhcccc
Confidence 9954 2 223455554
No 37
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=99.95 E-value=2.4e-27 Score=225.19 Aligned_cols=133 Identities=38% Similarity=0.661 Sum_probs=117.7
Q ss_pred cEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHHHHhhhcCCCCceeeeeccccc
Q psy9783 21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIYYQVDFHLN 100 (726)
Q Consensus 21 kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~~~l~~~np~~~v~~~~~~~~~ 100 (726)
+|+|||+||+||+++++|+++|+++|+|+|.|.|+++||+||+|++.+|+|++|+++++++++++||++++...
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~------ 74 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAV------ 74 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEE------
Confidence 69999999999999999999999999999999999999999999999999999999999887777777665542
Q ss_pred hhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchhhhHHHHHHhhCCCCeEEEEe
Q psy9783 101 RQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHH 180 (726)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~~~ak~~~~~~np~~~i~~~~ 180 (726)
.
T Consensus 75 -------------------------------------------------------------------------------~ 75 (143)
T cd01483 75 -------------------------------------------------------------------------------P 75 (143)
T ss_pred -------------------------------------------------------------------------------e
Confidence 2
Q ss_pred cccccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccceEEEEe
Q psy9783 181 TSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIK 239 (726)
Q Consensus 181 ~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~i~ 239 (726)
..+.+.. ...++.++|+||+|.|+.++|.+++++|+++++|+|++|+.|+.|+++++.
T Consensus 76 ~~~~~~~-~~~~~~~~diVi~~~d~~~~~~~l~~~~~~~~i~~i~~~~~g~~g~~~~~~ 133 (143)
T cd01483 76 EGISEDN-LDDFLDGVDLVIDAIDNIAVRRALNRACKELGIPVIDAGGLGLGGDIQVID 133 (143)
T ss_pred eecChhh-HHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcCCCcEEEEEEEE
Confidence 2222211 146788999999999999999999999999999999999999999998877
No 38
>PRK07877 hypothetical protein; Provisional
Probab=99.94 E-value=3.2e-27 Score=275.33 Aligned_cols=170 Identities=16% Similarity=0.269 Sum_probs=140.7
Q ss_pred CcccccccCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCC-CeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHHH
Q psy9783 2 ATKIPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGF-SNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARN 80 (726)
Q Consensus 2 ~~~~~~~~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv-~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~~ 80 (726)
++|+.++||.++|++|++++|+|||+| +||.++.+|+++|| |+|+|+|.|+||.|||||| +|+..|+|++|++++++
T Consensus 90 ~~Rn~~~ig~~~Q~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq-~~~~~diG~~Kv~~a~~ 167 (722)
T PRK07877 90 LDRNRNKITAEEQERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRV-PAGVFDLGVNKAVVAAR 167 (722)
T ss_pred hhchhhhCCHHHHHHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccc-cCChhhcccHHHHHHHH
Confidence 578999999999999999999999997 99999999999996 9999999999999999998 58999999999999997
Q ss_pred HhhhcCCCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchh
Q psy9783 81 SALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKA 160 (726)
Q Consensus 81 ~l~~~np~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~ 160 (726)
+|.++||+++|.
T Consensus 168 ~l~~inp~i~v~-------------------------------------------------------------------- 179 (722)
T PRK07877 168 RIAELDPYLPVE-------------------------------------------------------------------- 179 (722)
T ss_pred HHHHHCCCCEEE--------------------------------------------------------------------
Confidence 666666665544
Q ss_pred hhHHHHHHhhCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccceEE---E
Q psy9783 161 QVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVE---L 237 (726)
Q Consensus 161 ~~ak~~~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v~---~ 237 (726)
++...++.+ .-.+|++++|+|++|+||+++|..+|+.|.++++|+|.++..+ |++. +
T Consensus 180 -----------------~~~~~i~~~-n~~~~l~~~DlVvD~~D~~~~R~~ln~~a~~~~iP~i~~~~~~--g~~~~e~~ 239 (722)
T PRK07877 180 -----------------VFTDGLTED-NVDAFLDGLDVVVEECDSLDVKVLLREAARARRIPVLMATSDR--GLLDVERF 239 (722)
T ss_pred -----------------EEeccCCHH-HHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcCCC--CCcCccee
Confidence 444444432 2346788999999999999999999999999999999888555 7763 2
Q ss_pred -EeCCCCcceecCCCC-CCCCCCCccc
Q psy9783 238 -IKKGETKCYECDPKP-AAKTYPGCTI 262 (726)
Q Consensus 238 -i~p~~t~cy~C~~~~-~~~~~p~Cti 262 (726)
+.| .++||.|.... +......|+.
T Consensus 240 ~~~p-~~pc~~cl~~~~~~~~~~~~~~ 265 (722)
T PRK07877 240 DLEP-DRPILHGLLGDIDAAKLAGLST 265 (722)
T ss_pred eeCC-CCceeeccCCCCChhhhccCCh
Confidence 355 68999999643 3334445544
No 39
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=99.94 E-value=5.9e-27 Score=281.52 Aligned_cols=157 Identities=20% Similarity=0.365 Sum_probs=140.1
Q ss_pred CCcccccccCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHHH
Q psy9783 1 MATKIPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARN 80 (726)
Q Consensus 1 ~~~~~~~~~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~~ 80 (726)
++.||+++||.++|++|++++||||||||+|+|+||||+++|||+|+|+|.|.|+.+||+|||||+++|||++||+++++
T Consensus 6 lYsRQi~l~G~eaq~kL~~s~VLIiG~gGLG~EiaKnL~laGVg~iti~D~d~v~~sdL~rQf~~~~~dIGk~Kaea~~~ 85 (1008)
T TIGR01408 6 LYSRQLYVLGDEAMQKMAKSNVLISGMGGLGLEIAKNLVLAGVKSVTLHDTEKCQAWDLSSNFFLSEDDVGRNRAEAVVK 85 (1008)
T ss_pred hhhhHHHhcCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCeecHhhCCCceecchHHcCchHHHHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HhhhcCCCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchh
Q psy9783 81 SALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKA 160 (726)
Q Consensus 81 ~l~~~np~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~ 160 (726)
+|+++||+++|.+.
T Consensus 86 ~L~eLNp~V~V~~~------------------------------------------------------------------ 99 (1008)
T TIGR01408 86 KLAELNPYVHVSSS------------------------------------------------------------------ 99 (1008)
T ss_pred HHHHHCCCceEEEe------------------------------------------------------------------
Confidence 88888877766542
Q ss_pred hhHHHHHHhhCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhhhcC--CcEEEEccCCccceEEEE
Q psy9783 161 QVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASE--VPLIESGTAGYEGQVELI 238 (726)
Q Consensus 161 ~~ak~~~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~--iPlI~sg~~G~~G~v~~i 238 (726)
...+ +.+++++||+||+|.|+.+.+..+|++|+.++ +|+|.+++.|+.|++..-
T Consensus 100 -------------------~~~l-----~~e~l~~fdvVV~t~~~~~~~~~in~~cr~~~~~I~fI~~~~~G~~G~vf~D 155 (1008)
T TIGR01408 100 -------------------SVPF-----NEEFLDKFQCVVLTEMSLPLQKEINDFCHSQCPPIAFISADVRGLFGSLFCD 155 (1008)
T ss_pred -------------------cccC-----CHHHHcCCCEEEECCCCHHHHHHHHHHHHHcCCCeEEEEEeecceEEEEEec
Confidence 2222 23578999999999999999999999999999 999999999999988753
Q ss_pred eCCCCcceecCC
Q psy9783 239 KKGETKCYECDP 250 (726)
Q Consensus 239 ~p~~t~cy~C~~ 250 (726)
..+||.|..
T Consensus 156 ---~g~~f~~~d 164 (1008)
T TIGR01408 156 ---FGDEFEVLD 164 (1008)
T ss_pred ---CCCceEEEe
Confidence 346666654
No 40
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=99.94 E-value=5.5e-26 Score=224.49 Aligned_cols=142 Identities=28% Similarity=0.435 Sum_probs=120.6
Q ss_pred cEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHHHHhhhcCCCCceeeeeccccc
Q psy9783 21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIYYQVDFHLN 100 (726)
Q Consensus 21 kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~~~l~~~np~~~v~~~~~~~~~ 100 (726)
||+||||||+||+++++|+++|+++|+|+|.|.|+.+||+||+++ .+|+|++|+++++++++++||++++.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~-~~~vg~~Ka~~~~~~l~~lnp~v~i~-------- 71 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYF-LSQIGEPKVEALKENLREINPFVKIE-------- 71 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhccccc-HhhCCChHHHHHHHHHHHHCCCCEEE--------
Confidence 699999999999999999999999999999999999999999955 68999999999997777777666544
Q ss_pred hhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchhhhHHHHHHhhCCCCeEEEEe
Q psy9783 101 RQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHH 180 (726)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~~~ak~~~~~~np~~~i~~~~ 180 (726)
++.
T Consensus 72 -----------------------------------------------------------------------------~~~ 74 (174)
T cd01487 72 -----------------------------------------------------------------------------AIN 74 (174)
T ss_pred -----------------------------------------------------------------------------EEE
Confidence 333
Q ss_pred cccccccccccccccccEEEEccCcHHHHHHHHHHhhhc-CCcEEEEccCCccceEEEEeCCC--CcceecC
Q psy9783 181 TSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLAS-EVPLIESGTAGYEGQVELIKKGE--TKCYECD 249 (726)
Q Consensus 181 ~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~-~iPlI~sg~~G~~G~v~~i~p~~--t~cy~C~ 249 (726)
..+.. ....++++++|+||+|+||+++|..+++.|.++ ++|+|.++..|+.|++..+.++. .+||+|.
T Consensus 75 ~~~~~-~~~~~~l~~~DlVi~~~d~~~~r~~i~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (174)
T cd01487 75 IKIDE-NNLEGLFGDCDIVVEAFDNAETKAMLAESLLGNKNKPVVCASGMAGFGDSNNIKTKKISDNFYICG 145 (174)
T ss_pred eecCh-hhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEEehhhccCCeEEEEecCCCCCeEEee
Confidence 33332 122467899999999999999999888888777 99999998899999998887654 4799997
No 41
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=99.93 E-value=5e-25 Score=222.40 Aligned_cols=158 Identities=27% Similarity=0.439 Sum_probs=120.8
Q ss_pred cccccCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHHHHhhh
Q psy9783 5 IPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARNSALN 84 (726)
Q Consensus 5 ~~~~~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~~~l~~ 84 (726)
+.+.+|++.|++|++++|+||||||+||+++++|+++||++|+|+|.|.||.+||+||+ |..+|+|++|++++++++.+
T Consensus 7 ~~~~~~~~~q~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~-~~~~~iG~~Ka~~~~~~l~~ 85 (200)
T TIGR02354 7 LVARHTPKIVQKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQ-YKASQVGEPKTEALKENISE 85 (200)
T ss_pred HHHhcCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEccccccccc-CChhhCCCHHHHHHHHHHHH
Confidence 34678999999999999999999999999999999999999999999999999999997 56799999999999977777
Q ss_pred cCCCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchhhhHH
Q psy9783 85 FNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVAR 164 (726)
Q Consensus 85 ~np~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~~~ak 164 (726)
+||.+++.
T Consensus 86 inp~~~i~------------------------------------------------------------------------ 93 (200)
T TIGR02354 86 INPYTEIE------------------------------------------------------------------------ 93 (200)
T ss_pred HCCCCEEE------------------------------------------------------------------------
Confidence 77665544
Q ss_pred HHHHhhCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhh-hcCC-cEEE-EccCCccceEEEEe-C
Q psy9783 165 NSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCL-ASEV-PLIE-SGTAGYEGQVELIK-K 240 (726)
Q Consensus 165 ~~~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~-~~~i-PlI~-sg~~G~~G~v~~i~-p 240 (726)
++...+++. ...++++++|+||+|+||+++|..++..|. .++. +++. +|+.|+.+...+.. +
T Consensus 94 -------------~~~~~i~~~-~~~~~~~~~DlVi~a~Dn~~~k~~l~~~~~~~~~~~~ii~~~g~~g~~~~~~~~~~~ 159 (200)
T TIGR02354 94 -------------AYDEKITEE-NIDKFFKDADIVCEAFDNAEAKAMLVNAVLEKYKDKYLIAASGLAGYDDANSIKTRK 159 (200)
T ss_pred -------------EeeeeCCHh-HHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHcCCCcEEEEeccccCCCCceEEecc
Confidence 333333322 223578899999999999999988765554 4444 4443 44444443223322 2
Q ss_pred CCCcceecC
Q psy9783 241 GETKCYECD 249 (726)
Q Consensus 241 ~~t~cy~C~ 249 (726)
....||.|.
T Consensus 160 ~~~~~~~~~ 168 (200)
T TIGR02354 160 ISKHFYLCG 168 (200)
T ss_pred cCCCEEEcC
Confidence 345799994
No 42
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=99.92 E-value=1.6e-25 Score=228.40 Aligned_cols=145 Identities=28% Similarity=0.430 Sum_probs=127.6
Q ss_pred CcccccccCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHHHH
Q psy9783 2 ATKIPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARNS 81 (726)
Q Consensus 2 ~~~~~~~~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~~~ 81 (726)
++|+.+++|.+..++|++++|+|||+||+|+..++.|+|+|+|+|+|||+|.|+++|+|||.--...+||++|+++++++
T Consensus 13 f~~~~~l~G~~~lekl~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~er 92 (263)
T COG1179 13 FGGIARLYGEDGLEKLKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKER 92 (263)
T ss_pred hhhHHHHcChhHHHHHhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999998777789999999999999
Q ss_pred hhhcCCCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchhh
Q psy9783 82 ALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQ 161 (726)
Q Consensus 82 l~~~np~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~~ 161 (726)
++.|||.++|....+|.+.
T Consensus 93 i~~InP~c~V~~~~~f~t~------------------------------------------------------------- 111 (263)
T COG1179 93 IKQINPECEVTAINDFITE------------------------------------------------------------- 111 (263)
T ss_pred HHhhCCCceEeehHhhhCH-------------------------------------------------------------
Confidence 9999999888876555322
Q ss_pred hHHHHHHhhCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCc
Q psy9783 162 VARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGY 231 (726)
Q Consensus 162 ~ak~~~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~ 231 (726)
+....-+..+||+||+|+|++++...+-.+|+.+++|+|.++..|-
T Consensus 112 ------------------------en~~~~~~~~~DyvIDaiD~v~~Kv~Li~~c~~~ki~vIss~Gag~ 157 (263)
T COG1179 112 ------------------------ENLEDLLSKGFDYVIDAIDSVRAKVALIAYCRRNKIPVISSMGAGG 157 (263)
T ss_pred ------------------------hHHHHHhcCCCCEEEEchhhhHHHHHHHHHHHHcCCCEEeeccccC
Confidence 1112233457999999999999999999999999999999885553
No 43
>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family. Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.
Probab=99.92 E-value=3.2e-25 Score=238.10 Aligned_cols=147 Identities=18% Similarity=0.193 Sum_probs=130.8
Q ss_pred cccccc---cC-HHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHH
Q psy9783 3 TKIPGV---FE-KDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVA 78 (726)
Q Consensus 3 ~~~~~~---~g-~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va 78 (726)
.||+.+ || .++|++|++++|+ |||+|+.++..|+. |||+|+|+|.|.||.|||+ +||+++|||++|+++|
T Consensus 56 ~r~l~l~~~~~~~~~Q~kL~~s~Vl---~GGLGs~va~~La~-GVg~L~ivD~D~Ve~SNL~--~L~~~~diG~~K~~~a 129 (318)
T TIGR03603 56 IDNLTLKPMLIVEDYQKHLKKSKVL---LGKFGANIAYNLCN-NVGALFISDKTYFQETAEI--DLYSKEFILKKDIRDL 129 (318)
T ss_pred HHHhcCccccCcHHHHHHHhhCeee---cccchHHHHHHHhC-CCCEEEEEcCCEechhhHH--HHhChhhcCcHHHHHH
Confidence 456555 56 5589999999999 99999999999999 9999999999999999999 9999999999999999
Q ss_pred HHHhhhcCCCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcc
Q psy9783 79 RNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKS 158 (726)
Q Consensus 79 ~~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~s 158 (726)
++++..+||++++..
T Consensus 130 ~~~L~~lnp~v~i~~----------------------------------------------------------------- 144 (318)
T TIGR03603 130 TSNLDALELTKNVDE----------------------------------------------------------------- 144 (318)
T ss_pred HHHHHHhCCCCEEee-----------------------------------------------------------------
Confidence 988877777765431
Q ss_pred hhhhHHHHHHhhCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHH--HHHHhhhcCCcEEEEccCCccceEE
Q psy9783 159 KAQVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNH--VNRMCLASEVPLIESGTAGYEGQVE 236 (726)
Q Consensus 159 k~~~ak~~~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~--in~~c~~~~iPlI~sg~~G~~G~v~ 236 (726)
+ ..+++++|+|++|+||+..|.. +|++|+.+++|+|.++..|+.||+.
T Consensus 145 --------------------~----------~~li~~~DlVid~tDn~~~r~L~~iN~ac~~~~~PlV~gav~g~~Gqv~ 194 (318)
T TIGR03603 145 --------------------L----------KDLLKDYNYIIICTEHSNISLLRGLNKLSKETKKPNTIAFIDGPFVFIT 194 (318)
T ss_pred --------------------H----------HHHhCCCCEEEECCCCccHhHHHHHHHHHHHHCCCEEEEEEccCEEEEE
Confidence 1 2457889999999999999955 9999999999999999999999999
Q ss_pred EEeCCCCcceecCC
Q psy9783 237 LIKKGETKCYECDP 250 (726)
Q Consensus 237 ~i~p~~t~cy~C~~ 250 (726)
.+.|+.|+||+|..
T Consensus 195 ~~~P~~t~C~~Cl~ 208 (318)
T TIGR03603 195 CTLPPETGCFECLE 208 (318)
T ss_pred EEeCCCCCcHHHcc
Confidence 88898899999964
No 44
>PRK06153 hypothetical protein; Provisional
Probab=99.90 E-value=1.5e-23 Score=228.23 Aligned_cols=147 Identities=20% Similarity=0.262 Sum_probs=120.3
Q ss_pred CHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCC-CCCCCccCh--hHHHHHHHHhhhcC
Q psy9783 10 EKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQF-LFHKQHVGK--SKAQVARNSALNFN 86 (726)
Q Consensus 10 g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQf-Lf~~~dvGk--~Ka~va~~~l~~~n 86 (726)
+...|++|++++|+||||||+||.++..|+++||++|+|+|.|+|+.|||+||+ +|+.+|+|+ +|++++++++.+++
T Consensus 167 i~~~q~kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in 246 (393)
T PRK06153 167 IGALSAKLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMR 246 (393)
T ss_pred hHHHHHHHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhC
Confidence 446799999999999999999999999999999999999999999999999998 678999999 99999998777766
Q ss_pred CCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchhhhHHHH
Q psy9783 87 PDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNS 166 (726)
Q Consensus 87 p~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~~~ak~~ 166 (726)
|.+
T Consensus 247 ~~I----------------------------------------------------------------------------- 249 (393)
T PRK06153 247 RGI----------------------------------------------------------------------------- 249 (393)
T ss_pred CeE-----------------------------------------------------------------------------
Confidence 532
Q ss_pred HHhhCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccceEEEEeCC-CCcc
Q psy9783 167 ALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKKG-ETKC 245 (726)
Q Consensus 167 ~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~i~p~-~t~c 245 (726)
+++...+... +...+.++|+||+|+|+.++|..++++|..+++|+|++|+. +.+. .+ ...|
T Consensus 250 ----------~~~~~~I~~~--n~~~L~~~DiV~dcvDn~~aR~~ln~~a~~~gIP~Id~G~~-----l~~~-~g~l~G~ 311 (393)
T PRK06153 250 ----------VPHPEYIDED--NVDELDGFTFVFVCVDKGSSRKLIVDYLEALGIPFIDVGMG-----LELS-NGSLGGI 311 (393)
T ss_pred ----------EEEeecCCHH--HHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEeeec-----ceec-CCCcCcE
Confidence 2222333211 22357899999999999999999999999999999999843 1111 22 2568
Q ss_pred eecCCC
Q psy9783 246 YECDPK 251 (726)
Q Consensus 246 y~C~~~ 251 (726)
.+|...
T Consensus 312 ~Rvt~~ 317 (393)
T PRK06153 312 LRVTLS 317 (393)
T ss_pred EEEEEe
Confidence 888754
No 45
>PF02134 UBACT: Repeat in ubiquitin-activating (UBA) protein; InterPro: IPR000127 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme is responsible for activating ubiquitin, the first step in ubiquitinylation. The E1 enzyme hydrolyses ATP and adenylates the C-terminal glycine residue of ubiquitin, and then links this residue to the active site cysteine of E1, yielding a ubiquitin-thioester and free AMP. To be fully active, E1 must non-covalently bind to and adenylate a second ubiquitin molecule. The E1 enzyme can then transfer the thioester-linked ubiquitin molecule to a cysteine residue on the ubiquitin-conjugating enzyme, E2, in an ATP-dependent reaction. This domain is found 2 times in each member of the ubiquitin activating enzymes and is located downstream of the active site cysteine [].; GO: 0005524 ATP binding, 0008641 small protein activating enzyme activity, 0006464 protein modification process; PDB: 1Z7L_A 3CMM_A 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H ....
Probab=99.88 E-value=3.9e-23 Score=174.60 Aligned_cols=66 Identities=52% Similarity=0.747 Sum_probs=56.3
Q ss_pred cccCCChhhHHHHHHHHHHhHHhcCCCCCCHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhh
Q psy9783 465 VWDKDDKPAMDFVAACANIRAHVFSIPEKSRFDIKSMAGNIIPAIATSNAIVAGLVVLHAIHVLQA 530 (726)
Q Consensus 465 ~FDKDDd~hmDFVtAAANLRA~nY~Ip~~s~~~vK~IAGnIIPAIATTnAIVAGLvvlEl~KlL~~ 530 (726)
+||+||+.|++||+|+|||||++||||+.|++++++++|+||||++||||||||++|+|++|++++
T Consensus 1 ~Fd~dd~~h~~fI~a~anLrA~~f~I~~~~~~~~~~i~~~iIP~~~~t~~iva~~~~~e~~k~~~~ 66 (67)
T PF02134_consen 1 EFDKDDPLHLDFIYAAANLRAQNFGIPPLDREEIKKIAGNIIPAFAPTNAIVAGIAVNELYKLLQN 66 (67)
T ss_dssp ---TTSHHHHHHHHHHHHHHHHHTT---S-HHHHHHHHTTEE-B-HHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHhcCcCCCcCCchhHHHHHHHHHHHHHHhc
Confidence 499999999999999999999999999999999999999999999999999999999999999986
No 46
>KOG2336|consensus
Probab=99.87 E-value=4.7e-22 Score=205.23 Aligned_cols=166 Identities=29% Similarity=0.469 Sum_probs=133.5
Q ss_pred HHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHHHHhhhcCCCCc
Q psy9783 11 KDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARNSALNFNPDAN 90 (726)
Q Consensus 11 ~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~~~l~~~np~~~ 90 (726)
....+||+...|.|||.||+|+-.|++|-|+|+|++.++|.|.||..|+||-| |++...|.+|+++|...|..+||++.
T Consensus 74 V~dYErIR~~aVAiVGvGGVGSV~AeMLTRCGIGkLlLfDYDkVElANMNRLF-f~P~QaGlsKv~AA~~TL~~iNPDV~ 152 (422)
T KOG2336|consen 74 VDDYERIREFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLF-FQPDQAGLSKVDAAVQTLAEINPDVV 152 (422)
T ss_pred hhhHHHHhhheeEEEecCchhHHHHHHHHhcCcceEEEeecchhhhhcccccc-cCcccccchHHHHHHHHHHhcCCCeE
Confidence 35678999999999999999999999999999999999999999999999998 68999999999999998888888887
Q ss_pred eeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchhhhHHHHHHhh
Q psy9783 91 IYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNF 170 (726)
Q Consensus 91 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~~~ak~~~~~~ 170 (726)
+.+..-..+. .. +. +.
T Consensus 153 iE~hn~NITT---ve-------------------------------nF--------------------------d~---- 168 (422)
T KOG2336|consen 153 IEVHNYNITT---VE-------------------------------NF--------------------------DT---- 168 (422)
T ss_pred EEEeecceee---eh-------------------------------hH--------------------------HH----
Confidence 7642110000 00 00 00
Q ss_pred CCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccC--CccceEEEEeCCCCcceec
Q psy9783 171 NPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTA--GYEGQVELIKKGETKCYEC 248 (726)
Q Consensus 171 np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~--G~~G~v~~i~p~~t~cy~C 248 (726)
+.++|+...+ .-=+..|+|+.|+||++||..+|..|-..+..|+++|.. ...|+++.+.||.|.||.|
T Consensus 169 --------F~~~is~g~~--~~gkpvDLVLSCVDNfEARMavN~ACNE~~q~WmESGVSEnAVSGHIQ~i~PGetACFAC 238 (422)
T KOG2336|consen 169 --------FTDRISNGSL--CPGKPVDLVLSCVDNFEARMAVNQACNELNQTWMESGVSENAVSGHIQLIVPGETACFAC 238 (422)
T ss_pred --------HHHHhhcCCC--CCCCcceEEeeehhhHHHHHHHHHHHHHhhhHHHHccCccccccceeEEecCCccceecc
Confidence 0111111100 001458999999999999999999999999999999987 6889999999999999999
Q ss_pred CCC
Q psy9783 249 DPK 251 (726)
Q Consensus 249 ~~~ 251 (726)
.|.
T Consensus 239 aPP 241 (422)
T KOG2336|consen 239 APP 241 (422)
T ss_pred cCc
Confidence 864
No 47
>KOG2014|consensus
Probab=99.86 E-value=9.9e-22 Score=205.13 Aligned_cols=152 Identities=22% Similarity=0.400 Sum_probs=138.1
Q ss_pred CcccccccCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHHHH
Q psy9783 2 ATKIPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARNS 81 (726)
Q Consensus 2 ~~~~~~~~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~~~ 81 (726)
+-||+|+||.+.|++|+++||||+|++|+|+|++|||+++||++++++|.-.|....++-|||+..+++|+.||++..++
T Consensus 14 YDRQIRLWG~~AQ~~lr~s~VLlig~k~lgaEiaKnivLaGV~~ltlLD~~~Vt~Ed~~~qFli~~~~vg~~raeas~er 93 (331)
T KOG2014|consen 14 YDRQIRLWGLEAQRRLRKSHVLLIGGKGLGAEIAKNIVLAGVGSLTLLDDRLVTEEDVGAQFLISASSVGQTRAEASLER 93 (331)
T ss_pred HHHHHHHccHHHHHhhhhceEEEecCchHHHHHHHHhhhcccceeEEeeccccchhcCCceeEEchhhhchHHHHHHHHH
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchhh
Q psy9783 82 ALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQ 161 (726)
Q Consensus 82 l~~~np~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~~ 161 (726)
++++||.+.|.+..
T Consensus 94 l~~LNPmV~v~~d~------------------------------------------------------------------ 107 (331)
T KOG2014|consen 94 LQDLNPMVDVSVDK------------------------------------------------------------------ 107 (331)
T ss_pred HHhcCCceEEEech------------------------------------------------------------------
Confidence 99999998776531
Q ss_pred hHHHHHHhhCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccceEEEEeC
Q psy9783 162 VARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKK 240 (726)
Q Consensus 162 ~ak~~~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~i~p 240 (726)
+.+.. .+++||.+||+||-.--+.+.+..+|.+|+.++++++.+++.|+.|++..-.-
T Consensus 108 ---edl~e------------------k~eeff~qFdlVV~~~~s~e~~~kvn~icrk~~i~F~a~d~~g~~Gy~F~dL~ 165 (331)
T KOG2014|consen 108 ---EDLSE------------------KDEEFFTQFDLVVATDQSREEKCKVNEICRKLNIAFYAGDCFGLCGYAFADLQ 165 (331)
T ss_pred ---hhhhh------------------cchhhhhceeEEEEeccchhhhhhHHHHHHhcCceEEeccccceeeeeeeehh
Confidence 22221 24689999999998888999999999999999999999999999999866543
No 48
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=99.85 E-value=1.4e-21 Score=201.58 Aligned_cols=91 Identities=20% Similarity=0.375 Sum_probs=84.8
Q ss_pred CcccccccCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHHHH
Q psy9783 2 ATKIPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARNS 81 (726)
Q Consensus 2 ~~~~~~~~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~~~ 81 (726)
+.||+++||.++|++|++++|+|||+||+|||++|||+++|||+|+|+|.|.|+.+||+||||++. ++|++|+++++++
T Consensus 9 YsRQIrLwG~EgQ~KL~~SrVLVVG~GGLGsEVAKnLaLAGVGsItIvDdD~Ve~SNL~RQfl~~~-dvGk~KAeaAa~~ 87 (287)
T PTZ00245 9 YDRQIRLWGKSTQQQLMHTSVALHGVAGAAAEAAKNLVLAGVRAVAVADEGLVTDADVCTNYLMQG-EAGGTRGARALGA 87 (287)
T ss_pred HhHHHHHhCHHHHHHHhhCeEEEECCCchHHHHHHHHHHcCCCeEEEecCCccchhhhcccccccc-ccCCcHHHHHHHH
Confidence 679999999999999999999999999999999999999999999999999999999999999986 7899999999977
Q ss_pred hhhcCCCCceee
Q psy9783 82 ALNFNPDANIYY 93 (726)
Q Consensus 82 l~~~np~~~v~~ 93 (726)
++++||+++|..
T Consensus 88 L~eLNP~V~V~~ 99 (287)
T PTZ00245 88 LQRLNPHVSVYD 99 (287)
T ss_pred HHHHCCCcEEEE
Confidence 777777766553
No 49
>KOG2018|consensus
Probab=99.80 E-value=9.8e-20 Score=190.65 Aligned_cols=146 Identities=23% Similarity=0.311 Sum_probs=125.6
Q ss_pred cccccccCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHHHHh
Q psy9783 3 TKIPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARNSA 82 (726)
Q Consensus 3 ~~~~~~~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~~~l 82 (726)
+|.+.+||.++++||+++-|.||||||+|+.++-+|+|+|+++|.|||.|.|+.|-||||......|||.||++++++.+
T Consensus 58 arN~aFfGee~m~kl~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSLNrHs~Atl~DVG~PK~~clkkh~ 137 (430)
T KOG2018|consen 58 ARNYAFFGEEGMEKLTNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVSLSSLNRHSCATLADVGTPKVMCLKKHF 137 (430)
T ss_pred HhHHhhhhhhHHHHhcCcEEEEEecCchhHHHHHHHHHhcCceEEEechhhccHhhhhhhhhhhHhhcCCchHHHHHHHH
Confidence 57789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchhhh
Q psy9783 83 LNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQV 162 (726)
Q Consensus 83 ~~~np~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~~~ 162 (726)
.++.|.+.|..
T Consensus 138 skiaPw~eIda--------------------------------------------------------------------- 148 (430)
T KOG2018|consen 138 SKIAPWCEIDA--------------------------------------------------------------------- 148 (430)
T ss_pred HhhCccceecH---------------------------------------------------------------------
Confidence 99998886653
Q ss_pred HHHHHHhhCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccc
Q psy9783 163 ARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEG 233 (726)
Q Consensus 163 ak~~~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G 233 (726)
...-|+++ .-.+-++.+.|+|++|+||.+...-+-++|..+++++|.+-..+.+.
T Consensus 149 ---r~~l~~~~-------------s~edll~gnPdFvvDciDNidtKVdLL~y~~~~~l~Viss~Gaaaks 203 (430)
T KOG2018|consen 149 ---RNMLWTSS-------------SEEDLLSGNPDFVVDCIDNIDTKVDLLEYCYNHGLKVISSTGAAAKS 203 (430)
T ss_pred ---HHhhcCCC-------------chhhhhcCCCCeEeEhhhhhhhhhHHHHHHHHcCCceEeccCccccC
Confidence 11112221 11123456789999999999999999999999999999887555543
No 50
>KOG2337|consensus
Probab=99.79 E-value=2.7e-19 Score=196.62 Aligned_cols=206 Identities=22% Similarity=0.337 Sum_probs=157.5
Q ss_pred cccCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCcc---ChhHHHHHHHHhh
Q psy9783 7 GVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHV---GKSKAQVARNSAL 83 (726)
Q Consensus 7 ~~~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dv---Gk~Ka~va~~~l~ 83 (726)
|+.+.-..+++.+.|+|+.|||.+||.+|++|.-+||++||++|+.+|..||-.||.||+-+|. |++||++|+++|+
T Consensus 328 RlvPdLnLd~is~~KcLLLGAGTLGC~VAR~Ll~WGvRhITFvDn~kVsySNPVRQsLy~FEDc~~~g~~KAe~Aa~rLk 407 (669)
T KOG2337|consen 328 RLVPDLNLDIISQTKCLLLGAGTLGCNVARNLLGWGVRHITFVDNGKVSYSNPVRQSLYTFEDCLGGGRPKAETAAQRLK 407 (669)
T ss_pred eecCccchhhhhcceeEEecCcccchHHHHHHHhhccceEEEEecCeeeccchhhhhhhhhhhhhccCCcchHHHHHHHH
Confidence 5667777899999999999999999999999999999999999999999999999999999997 4999999999999
Q ss_pred hcCCCCcee-eeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchhhh
Q psy9783 84 NFNPDANIY-YQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQV 162 (726)
Q Consensus 84 ~~np~~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~~~ 162 (726)
+|+|.++-+ ++-...+++|. ++.+-...
T Consensus 408 ~IfP~m~atG~~lsIPMpGH~---------------------------------------------------I~e~~~e~ 436 (669)
T KOG2337|consen 408 EIFPSMEATGYVLSIPMPGHP---------------------------------------------------IGESLLEQ 436 (669)
T ss_pred HhCccccccceEEeccCCCCc---------------------------------------------------cchhhHHH
Confidence 999999865 55555555443 33333333
Q ss_pred HHHHHHhhCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccceEEEEeC--
Q psy9783 163 ARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKK-- 240 (726)
Q Consensus 163 ak~~~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~i~p-- 240 (726)
++..+... +.+++..|+|+..+|++++|+.-.-+|...++-+|++. .|+..++.+-+.
T Consensus 437 ~~~D~~~L-------------------e~LI~~HDviFLLtDsRESRWLPtll~a~~~KivINaA-LGFDsylVMRHG~~ 496 (669)
T KOG2337|consen 437 TKKDLKRL-------------------EQLIKDHDVIFLLTDSRESRWLPTLLAAAKNKIVINAA-LGFDSYLVMRHGTG 496 (669)
T ss_pred HHHHHHHH-------------------HHHHhhcceEEEEeccchhhhhHHHHHhhhcceEeeee-cccceeEEEecCCC
Confidence 33333322 46788999999999999999999999999999999887 788777654322
Q ss_pred ------------------CCCcceecCCCCCCC-------CCCCccccCCCCCcchhhhhHhHHhHHHH
Q psy9783 241 ------------------GETKCYECDPKPAAK-------TYPGCTIRNTPSEPIHCIVWAKHLFNYLE 284 (726)
Q Consensus 241 ------------------~~t~cy~C~~~~~~~-------~~p~Cti~~~p~~~~h~i~~a~~lf~~lf 284 (726)
..-+||.|+.--++. --..||.......+|-. ..|-+|+-.+.
T Consensus 497 ~~~~~~d~q~s~~~~i~~~qLGCYFCnDV~AP~nSl~DRTLDQqCTVtRPG~a~IA~-alAVELlvslL 564 (669)
T KOG2337|consen 497 RKEASDDGQSSDLKCINGDQLGCYFCNDVVAPGNSLTDRTLDQQCTVTRPGVANIAS-ALAVELLVSLL 564 (669)
T ss_pred CcccccccccccccccCcccceeEeEcceecCCCcccccchhheeeccCCchhHHHH-HHHHHHHHHHH
Confidence 134699999543221 23689988766555422 23444444433
No 51
>KOG2016|consensus
Probab=99.79 E-value=1.1e-19 Score=197.00 Aligned_cols=165 Identities=23% Similarity=0.407 Sum_probs=143.1
Q ss_pred CcccccccCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHHHH
Q psy9783 2 ATKIPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARNS 81 (726)
Q Consensus 2 ~~~~~~~~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~~~ 81 (726)
+-||+|+||+.+|..|..++|+++|||++|||++|||++.|+|.++++|...|+.+++..+|+...+++|++||.+..+.
T Consensus 10 YDRQlRlwge~gQ~~le~a~vCll~~~~~g~e~lKnLvl~Gigs~tvvd~~~v~~~d~g~nF~~~~~~~GksrA~a~~e~ 89 (523)
T KOG2016|consen 10 YDRQLRLWGEEGQAALESASVCLLNATPLGSEALKNLVLPGIGSFTVVDGSKVEQGDLGNNFFLDAKSIGKSRAEATLEF 89 (523)
T ss_pred HHHHHHHHHHHhHhhhhhceEEEecCChhHHHHHHhhcccccccEEEEecceeeecchhhHHHHHHHhhchhHHHHHHHH
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchhh
Q psy9783 82 ALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQ 161 (726)
Q Consensus 82 l~~~np~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~~ 161 (726)
++++||+++..+... +|+
T Consensus 90 LqeLN~~V~~~~vee-----------------------------~p~--------------------------------- 107 (523)
T KOG2016|consen 90 LQELNPSVSGSFVEE-----------------------------SPD--------------------------------- 107 (523)
T ss_pred HHHhChhhhcCcccc-----------------------------Chh---------------------------------
Confidence 999999987655322 121
Q ss_pred hHHHHHHhhCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccceEEEEeCC
Q psy9783 162 VARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKKG 241 (726)
Q Consensus 162 ~ak~~~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~i~p~ 241 (726)
.+. ..+..||.+|++|+.+-=+.+.-..+.++|+.+++|++.+.+.|+.|.+.++++.
T Consensus 108 ----~Li------------------~~~p~ff~qFtvViatnl~E~~~~kl~~~l~~~~vpll~~rs~Gl~G~iRI~ikE 165 (523)
T KOG2016|consen 108 ----FLI------------------DNDPSFFSQFTVVIATNLNEQTLLKLAEILREANVPLLLTRSYGLAGTIRISIKE 165 (523)
T ss_pred ----hhh------------------hcCchhhheeeeeeccccchhhhhhhHHHHHhcCCceEEEeeecceEEEEEEeee
Confidence 111 1245899999999988778888899999999999999999999999999998876
Q ss_pred CCcceecCCC
Q psy9783 242 ETKCYECDPK 251 (726)
Q Consensus 242 ~t~cy~C~~~ 251 (726)
. .-.+.+|+
T Consensus 166 H-~iieshPD 174 (523)
T KOG2016|consen 166 H-TIIESHPD 174 (523)
T ss_pred c-cccccCCC
Confidence 2 23344443
No 52
>KOG2012|consensus
Probab=99.78 E-value=2.4e-19 Score=205.10 Aligned_cols=149 Identities=21% Similarity=0.371 Sum_probs=135.6
Q ss_pred CCcccccccCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHHH
Q psy9783 1 MATKIPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARN 80 (726)
Q Consensus 1 ~~~~~~~~~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~~ 80 (726)
+++||++++|.+..++|..++|||.|+||+|.||||||+++||+++||-|.-.+..++|+.||+++++|||+++|++...
T Consensus 19 LYSRQLYVlG~eAM~~m~~S~VLisGl~GLGvEIAKNliLaGVksvTlhD~~~~~~~DLssqf~L~E~DigknRA~as~~ 98 (1013)
T KOG2012|consen 19 LYSRQLYVLGHEAMRRMQGSNVLISGLQGLGVEIAKNLILAGVKSVTLHDPRPVQLSDLSSQFYLSEEDIGKNRAEASVE 98 (1013)
T ss_pred hhhhhhhhccHHHHHHHhhCcEEEecCCcccHHHHhhHhhhccceEEeeCCCcccHHhhccceeeeHHhcCCchHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HhhhcCCCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchh
Q psy9783 81 SALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKA 160 (726)
Q Consensus 81 ~l~~~np~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~ 160 (726)
+|.++|+.|.|.+..
T Consensus 99 ~LaeLN~yV~V~v~t----------------------------------------------------------------- 113 (1013)
T KOG2012|consen 99 KLAELNNYVPVVVLT----------------------------------------------------------------- 113 (1013)
T ss_pred HHHHhhcceeeEEec-----------------------------------------------------------------
Confidence 888888877665422
Q ss_pred hhHHHHHHhhCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccceEEEEe
Q psy9783 161 QVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIK 239 (726)
Q Consensus 161 ~~ak~~~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~i~ 239 (726)
. .++++|+++|++|+-+--..+....||.+|+.++|-+|-+.+.|..|++..=.
T Consensus 114 --------------------~-----~~~~e~L~~FqvVVlt~~~le~q~~i~~fch~~~i~fi~ad~RGLfg~lFCDF 167 (1013)
T KOG2012|consen 114 --------------------G-----PLTEEFLSDFQVVVLTDASLEEQLKINDFCHSHGIAFIAADTRGLFGQLFCDF 167 (1013)
T ss_pred --------------------C-----cccHHHHhCCcEEEEecCchHHHHHHHHHHHhcCeEEEEeccchhhhhhhccC
Confidence 1 22358899999999988889999999999999999999999999999986533
No 53
>PF10585 UBA_e1_thiolCys: Ubiquitin-activating enzyme active site ; InterPro: IPR019572 Ubiquitin-activating enzyme (E1 enzyme) activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin-conjugating enzymes (E2) []. This domain carries the last of five conserved cysteines that is part of the active site of the enzyme, responsible for ubiquitin thiolester complex formation, the active site being represented by the sequence motif PICTLKNFP []. Not all proteins in this entry contain a functional active site.; PDB: 3CMM_A 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B 2PX9_A 1Z7L_A 3GZN_D 3DBL_F 1R4N_H ....
Probab=99.47 E-value=6e-15 Score=115.53 Aligned_cols=45 Identities=58% Similarity=1.130 Sum_probs=39.9
Q ss_pred CCCcceecCCCCCCCCCCCccccCCCCCcchhhhhHhHHhHHHHH
Q psy9783 241 GETKCYECDPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNYLER 285 (726)
Q Consensus 241 ~~t~cy~C~~~~~~~~~p~Cti~~~p~~~~h~i~~a~~lf~~lf~ 285 (726)
+.|+||+|.+++.++++|+|||||+|+.|+|||+|||.+|+.+|+
T Consensus 1 ~~Tecy~c~~~~~~~~~P~CTir~~P~~~~HcI~wAk~~f~~~F~ 45 (45)
T PF10585_consen 1 HVTECYECSPDPPEKSYPVCTIRNFPRTPEHCIEWAKDLFEELFG 45 (45)
T ss_dssp TTS--TTCSGGGSSSSEEHHHHHTS-SSHHHHHHHHHHHHHHHHT
T ss_pred CccccccCCCCCCCCCCCcchhhcCCCCchHHHHHHHHHHHHHhC
Confidence 479999999999988999999999999999999999999999995
No 54
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=99.43 E-value=3.2e-13 Score=153.97 Aligned_cols=137 Identities=19% Similarity=0.289 Sum_probs=110.3
Q ss_pred CHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHHHHhhhcCCCC
Q psy9783 10 EKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARNSALNFNPDA 89 (726)
Q Consensus 10 g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~~~l~~~np~~ 89 (726)
|....++.+++||+|+|+||+|+.++..|+.+|+++|+.+|.|.+ .|||+| ||+. ++.|++ +||++
T Consensus 120 ~~~rF~~qR~akVlVlG~Gg~~s~lv~sL~~sG~~~I~~vd~D~v-~SNlnR--------IgEl-~e~A~~----~n~~v 185 (637)
T TIGR03693 120 GALKFELSRNAKILAAGSGDFLTKLVRSLIDSGFPRFHAIVTDAE-EHALDR--------IHEL-AEIAEE----TDDAL 185 (637)
T ss_pred chhhhhhhhcccEEEEecCchHHHHHHHHHhcCCCcEEEEecccc-chhhhH--------HHHH-HHHHHH----hCCCC
Confidence 445566779999999999999999999999999999999999999 999999 8887 666662 55554
Q ss_pred ceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchhhhHHHHHHh
Q psy9783 90 NIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALN 169 (726)
Q Consensus 90 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~~~ak~~~~~ 169 (726)
++.
T Consensus 186 ~v~----------------------------------------------------------------------------- 188 (637)
T TIGR03693 186 LVQ----------------------------------------------------------------------------- 188 (637)
T ss_pred ceE-----------------------------------------------------------------------------
Confidence 443
Q ss_pred hCCCCeEEEEecccccccccccccccccEEEEccC--cHHHHHHHHHHhhhcC---CcEEEEccCCccceEEEEeCCCCc
Q psy9783 170 FNPDANIVAHHTSIISADFGVNYFKQFTLVMNALD--NRAARNHVNRMCLASE---VPLIESGTAGYEGQVELIKKGETK 244 (726)
Q Consensus 170 ~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alD--n~~aR~~in~~c~~~~---iPlI~sg~~G~~G~v~~i~p~~t~ 244 (726)
.+.. ++..--.+.|+++|+|+...| +..--+++|+.|++.+ +|++.+|..++.|-+.. |+.++
T Consensus 189 --------~i~~--~~~~dl~ev~~~~DiVi~vsDdy~~~~Lr~lN~acvkegk~~IPai~~G~~~liGPlft--PgkTG 256 (637)
T TIGR03693 189 --------EIDF--AEDQHLHEAFEPADWVLYVSDNGDIDDLHALHAFCKEEGKGFIPAICLKQVGLAGPVFQ--QHGDE 256 (637)
T ss_pred --------eccC--CcchhHHHhhcCCcEEEEECCCCChHHHHHHHHHHHHcCCCeEEEEEcccceeecceEC--CCCCc
Confidence 3322 111223467899999999999 4556789999999999 77778888888887765 99999
Q ss_pred ceecC
Q psy9783 245 CYECD 249 (726)
Q Consensus 245 cy~C~ 249 (726)
|++|.
T Consensus 257 CWeCa 261 (637)
T TIGR03693 257 CFEAA 261 (637)
T ss_pred HHHHH
Confidence 99994
No 55
>PF09358 UBA_e1_C: Ubiquitin-activating enzyme e1 C-terminal domain; InterPro: IPR018965 This presumed domain found at the C terminus of Ubiquitin-activating enzyme e1 proteins is functionally uncharacterised. ; PDB: 3CMM_A.
Probab=99.27 E-value=1e-12 Score=124.06 Aligned_cols=106 Identities=16% Similarity=0.204 Sum_probs=78.0
Q ss_pred cchhhhccCCCCCCccccccccCCCCCCCCCCCCCCCeEEE--EEECCC-CcHHHHHHHHHhcccCCccceeEEEecCC-
Q psy9783 535 CQTVYLRKKPNHRDQMIVPEKYLTAPNPTCPVCSPKPQRTI--GLDVTK-MTVAEFEEAVLKKTLNMSAMVDVMVEASG- 610 (726)
Q Consensus 535 ~rn~flnl~pn~~~~~~vP~~~~~ePnp~C~vC~~~~~~tl--~id~~~-~TL~~lid~ilk~~l~m~~~pdV~~~~~G- 610 (726)
|||+|+||| +|++.++||.+.........+||+ +++++. +||++|+++| ++++| .+|++.+.|
T Consensus 1 yrN~F~NLA--------lP~~~fsEP~~~~k~k~~~~~~T~WDr~~v~~~~Tl~~li~~~-~~~~~----lev~ml~~g~ 67 (125)
T PF09358_consen 1 YRNSFLNLA--------LPFFSFSEPIPAPKTKYNDKEWTLWDRIEVNGDMTLQELIDYF-KEKYG----LEVTMLSQGV 67 (125)
T ss_dssp --EEEEETT--------TTEEEEE---B--EEEETTEEETTT-EEEEES--BHHHHHHHH-HHTTS-----EEEEEEETT
T ss_pred CccEEEEcC--------ccceeeeeccCCCceEecCccccceeEEEEcCCCCHHHHHHHH-HHHhC----ceEEEEEeCC
Confidence 799999997 799999999986544224446766 777765 9999999998 56677 477888788
Q ss_pred eEEEecc-ccccccccCCchhhhhhhcccC---CCCCCCeEEEEecC
Q psy9783 611 SVIISSE-EGETEANNDKPLEHGLIISHRV---SARDGPEFEILDQK 653 (726)
Q Consensus 611 ~ll~ss~-e~e~~~nl~k~L~elv~v~~~~---~~~~~~~feV~~~~ 653 (726)
+++|+++ ..+.+++++++|+|+|+-+.+. +..++++|+|+|++
T Consensus 68 ~~LY~~f~~~~~~~rl~~~i~elv~~v~k~~~~~~~~~l~l~v~~~d 114 (125)
T PF09358_consen 68 SLLYSSFPPPKHKERLKMPISELVEEVTKKPIPPGQKYLVLEVSCED 114 (125)
T ss_dssp EEEEETT-HHHHHHHTTSBHHHHHHHHTSS---TT--EEEEEEEEE-
T ss_pred EEEEecCChhhhHHHhCCcHHHHHHHhcCCCCCCCceEEEEEEEEeC
Confidence 8999999 6778999999999999977765 56778999999984
No 56
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=98.76 E-value=7.8e-09 Score=92.00 Aligned_cols=73 Identities=34% Similarity=0.414 Sum_probs=53.6
Q ss_pred EEEEECCCCcHHHHHHHHHhcccCCccceeEEEecCCeEEEeccccccccccCCchhhhhhhcccC-----CCCCCCeEE
Q psy9783 574 TIGLDVTKMTVAEFEEAVLKKTLNMSAMVDVMVEASGSVIISSEEGETEANNDKPLEHGLIISHRV-----SARDGPEFE 648 (726)
Q Consensus 574 tl~id~~~~TL~~lid~ilk~~l~m~~~pdV~~~~~G~ll~ss~e~e~~~nl~k~L~elv~v~~~~-----~~~~~~~fe 648 (726)
|++++++++||++|++.|++++|||.+ |+|++ .|+++|+++++++++|++|+|+++ -|.+.. ++..+..++
T Consensus 1 tv~~d~~~~TL~~lv~~Vlk~~Lg~~~-P~v~~--~~~ilyd~de~~~~~~l~k~L~el-gi~~gs~L~v~D~~q~~~~~ 76 (87)
T PF14732_consen 1 TVKVDTKKMTLGDLVEKVLKKKLGMNE-PDVSV--GGTILYDSDEEEYDDNLPKKLSEL-GIVNGSILTVDDFDQDFNLE 76 (87)
T ss_dssp EEEE-TTT-BHHHHHHHCCCCCS--SS-EEEEE--S-EEEE-SSSSSSTTCTTSBGGGG-T--TT-EEEEEETTTTEEEE
T ss_pred CEEEechhCcHHHHHHHHHHhccCCCC-CEEEe--CCCEEEcCCcchhhhcccCChhHc-CCCCCCEEEEEEcCCCcEEE
Confidence 678999999999999999999999999 99998 458999999999999999999996 444322 444445555
Q ss_pred EE
Q psy9783 649 IL 650 (726)
Q Consensus 649 V~ 650 (726)
|.
T Consensus 77 i~ 78 (87)
T PF14732_consen 77 IN 78 (87)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 57
>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain. This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.
Probab=97.60 E-value=6.8e-05 Score=76.05 Aligned_cols=39 Identities=18% Similarity=0.164 Sum_probs=34.9
Q ss_pred cCHHHHHHHhcCcEEEEcCchHHHH-HHHHHHHhCCCeEE
Q psy9783 9 FEKDLEDLIKKSKVLVVGAGGIGCE-LLKNLVLSGFSNIE 47 (726)
Q Consensus 9 ~g~~~q~kL~~~kVlvVGaGgiGce-iaknLal~Gv~~i~ 47 (726)
=+...+++|++++|.|+|.|++|++ ++..|+.+|++.+.
T Consensus 95 ~~~~a~~~l~~~~V~V~~~G~~~~~~l~~aLaa~Gv~~~~ 134 (193)
T TIGR03882 95 DPAAALERLRQLTVTVLSFGEGGAAALAAALAAAGIRIAP 134 (193)
T ss_pred CHHHHHHHHhcCcEEEEecCCCcHHHHHHHHHHcCCCccC
Confidence 3567789999999999999999999 99999999999765
No 58
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=97.28 E-value=0.00035 Score=78.95 Aligned_cols=92 Identities=22% Similarity=0.327 Sum_probs=63.4
Q ss_pred hhhcccchHHHHHHHhHHHHHHHHcCCcccCCCCCCCCcccCCCchhhcCCCcccCCCCCCcccccChHHHHHHHHHHHH
Q psy9783 369 ASACGYDPRKLFAKFFDADIRYLISMSDLWKTRKAPQPLVWDTLSDAVAGSSKETDGGGLKDQRVWSVAECARVFERSVR 448 (726)
Q Consensus 369 ~~~c~~~~~~~f~~~F~~~I~~Ll~~~~~w~~~~~P~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~s~~ 448 (726)
.+.|+.||+.+|+.+|....+.+- .|+ | .+--.|......++|...++
T Consensus 172 ~eHcI~wA~~~F~~lF~~~~~~~~---~~~----------~-------------------~~c~~~a~~~f~~~F~~~I~ 219 (435)
T cd01490 172 IEHTIQWARDEFEGLFKQPPENVN---QYL----------F-------------------EDCVRWARLLFEKYFNNNIK 219 (435)
T ss_pred chHHHHHHHHHHHHHhccchHHHH---Hhh----------H-------------------HHHHHHHHHHHHHHHHHHHH
Confidence 368999999999999986433221 111 1 01112222333466888888
Q ss_pred HHHHHhhhh---------h----ccCCCccccCCChhhHHHHHHHHHHhHHhcCCCC
Q psy9783 449 ELKTKFDAA---------V----EKDEHLVWDKDDKPAMDFVAACANIRAHVFSIPE 492 (726)
Q Consensus 449 ~L~~~l~~~---------~----~~~~~l~FDKDDd~hmDFVtAAANLRA~nY~Ip~ 492 (726)
+|...++.- | ....|+.||.+|+.|++||.++|||||.+|+|+.
T Consensus 220 ~ll~~~p~d~~~~~g~~fw~~~kr~P~p~~fd~~~~~h~~fv~~~a~l~a~~~~~~~ 276 (435)
T cd01490 220 QLLHNFPPDAVTSDGAPFWSGPKRCPTPLEFDVNNPLHLDFVLAAANLYAEVYGIPG 276 (435)
T ss_pred HHHHhCccccccccccccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCc
Confidence 887765331 1 1245799999999999999999999999999985
No 59
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.20 E-value=0.0013 Score=73.52 Aligned_cols=41 Identities=22% Similarity=0.330 Sum_probs=33.6
Q ss_pred cccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCC
Q psy9783 189 GVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAG 230 (726)
Q Consensus 189 ~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G 230 (726)
-..+++++|+||+|+.-+-.+ .+-+.|.+.++++++.....
T Consensus 62 l~~li~~~d~VIn~~p~~~~~-~i~ka~i~~gv~yvDts~~~ 102 (389)
T COG1748 62 LVALIKDFDLVINAAPPFVDL-TILKACIKTGVDYVDTSYYE 102 (389)
T ss_pred HHHHHhcCCEEEEeCCchhhH-HHHHHHHHhCCCEEEcccCC
Confidence 346788899999999987777 56678999999999977443
No 60
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.05 E-value=0.0021 Score=68.86 Aligned_cols=36 Identities=31% Similarity=0.580 Sum_probs=33.2
Q ss_pred HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
+..++|+|+|+||.|..++..|+..|+++|+|+|.+
T Consensus 125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~ 160 (284)
T PRK12549 125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD 160 (284)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC
Confidence 456789999999999999999999999999999865
No 61
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.94 E-value=0.0088 Score=61.12 Aligned_cols=35 Identities=20% Similarity=0.392 Sum_probs=31.8
Q ss_pred HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~ 51 (726)
.|.+++|+|||+|.+|...++.|...| .+|+||+.
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~g-a~V~VIs~ 41 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKYG-AHIVVISP 41 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCC-CeEEEEcC
Confidence 378899999999999999999999999 68999864
No 62
>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]
Probab=96.65 E-value=0.0073 Score=59.90 Aligned_cols=59 Identities=20% Similarity=0.401 Sum_probs=49.5
Q ss_pred cCcEEEEcCchHHHHHHHHHH---HhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHH
Q psy9783 19 KSKVLVVGAGGIGCELLKNLV---LSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVAR 79 (726)
Q Consensus 19 ~~kVlvVGaGgiGceiaknLa---l~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~ 79 (726)
+..|.++|||-+|--++-+|. +-|..+|.++|...|+..++----+ -.-+|.+|++.++
T Consensus 18 rGeV~l~G~GRLG~Rval~Lle~HRGGperi~v~Dgqrve~dDiihrr~--Ga~~GEyKv~Fi~ 79 (217)
T COG4015 18 RGEVSLIGCGRLGVRVALDLLEVHRGGPERIYVFDGQRVEEDDIIHRRL--GAKVGEYKVDFIK 79 (217)
T ss_pred CceEEEEeccchhHHHHHHHHHHhcCCCeEEEEecCcccCchhhHHHHh--CCCcchhHHHHHH
Confidence 446999999999999999987 4588899999999999999843222 3669999999988
No 63
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=96.55 E-value=0.0017 Score=57.75 Aligned_cols=51 Identities=18% Similarity=0.252 Sum_probs=39.2
Q ss_pred CCcHHHHHHHHHhc-ccCCccceeEEEecCCeEEEec---cccccccccCCchhhhh
Q psy9783 581 KMTVAEFEEAVLKK-TLNMSAMVDVMVEASGSVIISS---EEGETEANNDKPLEHGL 633 (726)
Q Consensus 581 ~~TL~~lid~ilk~-~l~m~~~pdV~~~~~G~ll~ss---~e~e~~~nl~k~L~elv 633 (726)
.+||++|++.+.++ .+.|.. |+|+.. .++||+.+ .|..|+.||.|+|.||+
T Consensus 6 ~~TL~~lid~L~~~~~~qlk~-PSlt~~-~k~LYm~~pp~Lee~Tr~NL~k~l~eL~ 60 (84)
T PF08825_consen 6 SWTLQDLIDSLCEKPEFQLKK-PSLTTA-NKTLYMQSPPSLEEATRPNLSKKLKELL 60 (84)
T ss_dssp TSBSHHHHHHHHHSTTT--SS--EEESS-EEEEEESSSHHHHHHTGGGGSSBTTTTH
T ss_pred cchHHHHHHHHHhChhhhcCC-CcccCC-CceEEEeCCHHHHHHhhhhhhhhHHHHh
Confidence 78999999999766 489999 999833 34888864 45789999999999993
No 64
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=96.48 E-value=0.0052 Score=55.95 Aligned_cols=37 Identities=24% Similarity=0.478 Sum_probs=31.7
Q ss_pred HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783 16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDT 53 (726)
Q Consensus 16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~ 53 (726)
.|++.+|+|||.|.+|..=++.|..+| .+++++..+.
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~g-A~v~vis~~~ 40 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAG-AKVTVISPEI 40 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCT-BEEEEEESSE
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCC-CEEEEECCch
Confidence 478899999999999999999999999 6899998775
No 65
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.42 E-value=0.032 Score=57.17 Aligned_cols=35 Identities=23% Similarity=0.458 Sum_probs=31.9
Q ss_pred HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
|.+++|+|||.|.+|..-++.|...|. +++||+.+
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~ga-~VtVvsp~ 41 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAGA-QLRVIAEE 41 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence 678899999999999999999999994 79999865
No 66
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=96.08 E-value=0.016 Score=64.15 Aligned_cols=35 Identities=17% Similarity=0.354 Sum_probs=28.9
Q ss_pred ccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEE
Q psy9783 190 VNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIE 225 (726)
Q Consensus 190 ~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~ 225 (726)
..+++++|+||+|+..+ .-..+-+.|.++++++|+
T Consensus 62 ~~~~~~~dvVin~~gp~-~~~~v~~~~i~~g~~yvD 96 (386)
T PF03435_consen 62 AELLRGCDVVINCAGPF-FGEPVARACIEAGVHYVD 96 (386)
T ss_dssp HHHHTTSSEEEE-SSGG-GHHHHHHHHHHHT-EEEE
T ss_pred HHHHhcCCEEEECCccc-hhHHHHHHHHHhCCCeec
Confidence 46789999999999887 556788999999999999
No 67
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=95.99 E-value=0.087 Score=51.83 Aligned_cols=36 Identities=19% Similarity=0.340 Sum_probs=32.0
Q ss_pred HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
.|.+.+|+|||.|.+|...++.|...|. +++||+.+
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga-~V~VIsp~ 45 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDTGA-FVTVVSPE 45 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCc
Confidence 4788999999999999999999999995 68898655
No 68
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=95.93 E-value=0.012 Score=56.10 Aligned_cols=35 Identities=37% Similarity=0.542 Sum_probs=33.4
Q ss_pred HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEe
Q psy9783 16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVD 50 (726)
Q Consensus 16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD 50 (726)
.|.+++|+|+|+||.|..+++.|+..|+++|+|+.
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~n 43 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVN 43 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEE
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEE
Confidence 57899999999999999999999999999999976
No 69
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=95.48 E-value=0.12 Score=53.90 Aligned_cols=40 Identities=18% Similarity=0.280 Sum_probs=34.3
Q ss_pred cccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEcc
Q psy9783 189 GVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGT 228 (726)
Q Consensus 189 ~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~ 228 (726)
....+.++++|+.|+|+.+.-..+...|.+.++++..+.-
T Consensus 79 ~~~dl~g~~LViaATdD~~vN~~I~~~a~~~~~lvn~vd~ 118 (223)
T PRK05562 79 DKEFIKDKHLIVIATDDEKLNNKIRKHCDRLYKLYIDCSD 118 (223)
T ss_pred ChHHhCCCcEEEECCCCHHHHHHHHHHHHHcCCeEEEcCC
Confidence 3456788999999999999999999999999998776553
No 70
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=95.19 E-value=0.071 Score=57.29 Aligned_cols=35 Identities=31% Similarity=0.558 Sum_probs=31.8
Q ss_pred HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~ 51 (726)
+.+++++|+|+||+|..++..|+..|+.+|+|++.
T Consensus 124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R 158 (289)
T PRK12548 124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNI 158 (289)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence 45678999999999999999999999999999874
No 71
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=94.92 E-value=0.031 Score=58.13 Aligned_cols=37 Identities=32% Similarity=0.541 Sum_probs=34.6
Q ss_pred HHhcCcEEEEcCchHHHHHHHHHHHhCCC--eEEEEeCC
Q psy9783 16 LIKKSKVLVVGAGGIGCELLKNLVLSGFS--NIEIVDLD 52 (726)
Q Consensus 16 kL~~~kVlvVGaGgiGceiaknLal~Gv~--~i~iiD~D 52 (726)
.+.+.+|+|+|+|+.|+.+++.|+..|++ +|.|+|.+
T Consensus 22 ~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 22 KIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 47788999999999999999999999999 99999976
No 72
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=94.72 E-value=0.055 Score=46.55 Aligned_cols=31 Identities=32% Similarity=0.607 Sum_probs=27.8
Q ss_pred cEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 21 kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
||+|||+|-+|+|+|..|+..| .+++|++..
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g-~~vtli~~~ 31 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELG-KEVTLIERS 31 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT-SEEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHHhC-cEEEEEecc
Confidence 6899999999999999999999 478888754
No 73
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.22 E-value=0.32 Score=51.87 Aligned_cols=32 Identities=31% Similarity=0.618 Sum_probs=28.7
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
.+|.|||+|.+|+.++..|+..|. +++++|.+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~ 35 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDIS 35 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCC
Confidence 579999999999999999999996 69999854
No 74
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=94.12 E-value=0.074 Score=60.11 Aligned_cols=46 Identities=37% Similarity=0.523 Sum_probs=39.6
Q ss_pred HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHHH
Q psy9783 16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARN 80 (726)
Q Consensus 16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~~ 80 (726)
.|..++|+|||+|-+|.-++++|...|+..|+| +||++- ||+-+++
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~I----------aNRT~e---------rA~~La~ 220 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITI----------ANRTLE---------RAEELAK 220 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEE----------EcCCHH---------HHHHHHH
Confidence 378889999999999999999999999999999 577752 6776664
No 75
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.80 E-value=0.22 Score=56.13 Aligned_cols=36 Identities=42% Similarity=0.460 Sum_probs=32.2
Q ss_pred HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783 17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDT 53 (726)
Q Consensus 17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~ 53 (726)
|++++|+|+|+|++|.++|+.|+..|. +++++|.+.
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~-~V~~~d~~~ 38 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGA-KVILTDEKE 38 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence 568999999999999999999999995 699998653
No 76
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.61 E-value=0.62 Score=49.49 Aligned_cols=32 Identities=28% Similarity=0.636 Sum_probs=28.7
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
.+|.|||+|-+|+.++..|+..|. +++++|.+
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~ 35 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGY-DVVMVDIS 35 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCC-ceEEEeCC
Confidence 479999999999999999999997 68888854
No 77
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.59 E-value=0.38 Score=52.83 Aligned_cols=93 Identities=11% Similarity=0.093 Sum_probs=56.0
Q ss_pred cccccccEEEEccC-cHHHHHHHHHHhhhcCC--cEEEEccCCccce-EEEEeCCCCcceecCCCCCCCCCCCccccCCC
Q psy9783 191 NYFKQFTLVMNALD-NRAARNHVNRMCLASEV--PLIESGTAGYEGQ-VELIKKGETKCYECDPKPAAKTYPGCTIRNTP 266 (726)
Q Consensus 191 ~~~~~~DlVi~alD-n~~aR~~in~~c~~~~i--PlI~sg~~G~~G~-v~~i~p~~t~cy~C~~~~~~~~~p~Cti~~~p 266 (726)
+.+.++|+|+.|+- +.+.+..+-+-..+.-. -+|.+.|.|.... +.-...+-..|...++-.++...|..-+-..|
T Consensus 79 ~av~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~~~p~R~~g~HffnP~~~~pLVEVv~g~ 158 (321)
T PRK07066 79 ACVADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARATHPERCVVGHPFNPVYLLPLVEVLGGE 158 (321)
T ss_pred HHhcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCC
Confidence 45689999999864 55545443332222211 2788887765321 11111222346666666666666777777777
Q ss_pred CCcchhhhhHhHHhHHH
Q psy9783 267 SEPIHCIVWAKHLFNYL 283 (726)
Q Consensus 267 ~~~~h~i~~a~~lf~~l 283 (726)
.+..-.+.++..++..+
T Consensus 159 ~T~~e~~~~~~~f~~~l 175 (321)
T PRK07066 159 RTAPEAVDAAMGIYRAL 175 (321)
T ss_pred CCCHHHHHHHHHHHHHc
Confidence 77777888888877663
No 78
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.57 E-value=0.49 Score=50.80 Aligned_cols=32 Identities=19% Similarity=0.509 Sum_probs=28.2
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
++|.|||+|.+|+.++..|+..|. +++++|.+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~ 36 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDVM 36 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence 479999999999999999999996 68888844
No 79
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=93.35 E-value=0.49 Score=44.05 Aligned_cols=37 Identities=16% Similarity=0.293 Sum_probs=30.2
Q ss_pred ccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEc
Q psy9783 190 VNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESG 227 (726)
Q Consensus 190 ~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg 227 (726)
...+.+.|+|+.|+++..++.+...+ ...++++|+..
T Consensus 61 ~~~~~~~Dvvf~a~~~~~~~~~~~~~-~~~g~~ViD~s 97 (121)
T PF01118_consen 61 PEELSDVDVVFLALPHGASKELAPKL-LKAGIKVIDLS 97 (121)
T ss_dssp GHHHTTESEEEE-SCHHHHHHHHHHH-HHTTSEEEESS
T ss_pred hhHhhcCCEEEecCchhHHHHHHHHH-hhCCcEEEeCC
Confidence 34468999999999999888888776 88899999866
No 80
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.33 E-value=0.15 Score=54.82 Aligned_cols=92 Identities=13% Similarity=0.061 Sum_probs=52.1
Q ss_pred cccccEEEEccC-cHHHHHHHHHHhhh----cCCcEEEEccCCc-cceEEEEeCCCCcceecCCCCCCCCCCCccccCCC
Q psy9783 193 FKQFTLVMNALD-NRAARNHVNRMCLA----SEVPLIESGTAGY-EGQVELIKKGETKCYECDPKPAAKTYPGCTIRNTP 266 (726)
Q Consensus 193 ~~~~DlVi~alD-n~~aR~~in~~c~~----~~iPlI~sg~~G~-~G~v~~i~p~~t~cy~C~~~~~~~~~p~Cti~~~p 266 (726)
++++|+|+.|+- +.+.+..+-..... .+..+ .+.|.+. .............+...++-.+....|...+.-.+
T Consensus 82 ~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il-~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lvElv~~~ 160 (286)
T PRK07819 82 FADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVL-ASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLVELVPTL 160 (286)
T ss_pred hCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEE-EECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceEEEeCCC
Confidence 689999999864 45555544333222 23433 3433332 11111122222335555555444556777888888
Q ss_pred CCcchhhhhHhHHhHHHHH
Q psy9783 267 SEPIHCIVWAKHLFNYLER 285 (726)
Q Consensus 267 ~~~~h~i~~a~~lf~~lf~ 285 (726)
......+.+++.++....+
T Consensus 161 ~T~~~~~~~~~~~~~~~lg 179 (286)
T PRK07819 161 VTSEATVARAEEFASDVLG 179 (286)
T ss_pred CCCHHHHHHHHHHHHHhCC
Confidence 8888899999887665444
No 81
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=93.21 E-value=0.3 Score=50.51 Aligned_cols=42 Identities=12% Similarity=0.188 Sum_probs=34.4
Q ss_pred ccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccC
Q psy9783 188 FGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTA 229 (726)
Q Consensus 188 ~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~ 229 (726)
|....+..+++|+-|+|+.+--..+-+.|..+++|+-.+.-.
T Consensus 65 ~~~~~~~~~~lviaAt~d~~ln~~i~~~a~~~~i~vNv~D~p 106 (210)
T COG1648 65 FDAEDLDDAFLVIAATDDEELNERIAKAARERRILVNVVDDP 106 (210)
T ss_pred cChhhhcCceEEEEeCCCHHHHHHHHHHHHHhCCceeccCCc
Confidence 444556669999999999999999999999999987655533
No 82
>PRK10637 cysG siroheme synthase; Provisional
Probab=92.99 E-value=0.84 Score=52.30 Aligned_cols=40 Identities=18% Similarity=0.160 Sum_probs=33.0
Q ss_pred ccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEc
Q psy9783 188 FGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESG 227 (726)
Q Consensus 188 ~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg 227 (726)
|....+.++++|+.|+|+.+.-..+-+.|...++++-.+.
T Consensus 65 ~~~~dl~~~~lv~~at~d~~~n~~i~~~a~~~~~lvN~~d 104 (457)
T PRK10637 65 FDESLLDTCWLAIAATDDDAVNQRVSEAAEARRIFCNVVD 104 (457)
T ss_pred CChHHhCCCEEEEECCCCHHHhHHHHHHHHHcCcEEEECC
Confidence 3446678999999999999999999999999998754433
No 83
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=92.72 E-value=0.74 Score=47.88 Aligned_cols=32 Identities=31% Similarity=0.681 Sum_probs=28.1
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
++++|+|+|-+|..+|+.|+..| .++++||.|
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g-~~Vv~Id~d 32 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEG-HNVVLIDRD 32 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCC-CceEEEEcC
Confidence 47999999999999999999999 457788866
No 84
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=92.71 E-value=0.18 Score=44.31 Aligned_cols=38 Identities=32% Similarity=0.476 Sum_probs=34.3
Q ss_pred HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCcc
Q psy9783 17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTI 54 (726)
Q Consensus 17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~I 54 (726)
+..++++|+|+|++|..++..|...|...+.+.|.|.+
T Consensus 21 ~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~rdi~ 58 (86)
T cd05191 21 LKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDRDIL 58 (86)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEE
Confidence 67899999999999999999999998889999988443
No 85
>PRK04148 hypothetical protein; Provisional
Probab=92.65 E-value=0.62 Score=45.14 Aligned_cols=50 Identities=16% Similarity=0.276 Sum_probs=38.7
Q ss_pred EecccccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCC
Q psy9783 179 HHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAG 230 (726)
Q Consensus 179 ~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G 230 (726)
..++++++ +.++++++|+|-..--..+-...+-+++.+.+.+++---..|
T Consensus 63 v~dDlf~p--~~~~y~~a~liysirpp~el~~~~~~la~~~~~~~~i~~l~~ 112 (134)
T PRK04148 63 FVDDLFNP--NLEIYKNAKLIYSIRPPRDLQPFILELAKKINVPLIIKPLSG 112 (134)
T ss_pred EECcCCCC--CHHHHhcCCEEEEeCCCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 33444433 246789999999999999999999999999999998655443
No 86
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=92.57 E-value=0.15 Score=54.66 Aligned_cols=35 Identities=26% Similarity=0.447 Sum_probs=32.0
Q ss_pred HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~ 51 (726)
+..++|+|+|+||.|..++..|+..|+.+|+|++.
T Consensus 123 ~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nR 157 (282)
T TIGR01809 123 LAGFRGLVIGAGGTSRAAVYALASLGVTDITVINR 157 (282)
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeC
Confidence 45678999999999999999999999999999863
No 87
>KOG2013|consensus
Probab=92.52 E-value=0.036 Score=62.95 Aligned_cols=55 Identities=20% Similarity=0.044 Sum_probs=43.5
Q ss_pred CccccCCChhhHHHHHHHHHHhHHhcCCCCCCHHHHHHhhcCCCcchhHHHHHHH
Q psy9783 463 HLVWDKDDKPAMDFVAACANIRAHVFSIPEKSRFDIKSMAGNIIPAIATSNAIVA 517 (726)
Q Consensus 463 ~l~FDKDDd~hmDFVtAAANLRA~nY~Ip~~s~~~vK~IAGnIIPAIATTnAIVA 517 (726)
.+.|++-+-...-|++--.-||...-.-.+.++-.--.+|+.|.|+.-|-|++++
T Consensus 242 ~~~~~~~~i~~klF~~dI~yl~~~e~~wk~r~~p~pl~~~~~i~~~~~t~ns~~q 296 (603)
T KOG2013|consen 242 NLDFGPFKIFNKLFIYDIEYLLGMEALWKPRSRPVPLSIAEVISTSLETINSIVQ 296 (603)
T ss_pred ccCCChhhhhhHHHHHHHHHHHhhhhhccCCCCCCCcchhhccCCccccccchhh
Confidence 3444444444477888888899888888887777788899999999999999988
No 88
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=92.39 E-value=0.18 Score=47.94 Aligned_cols=36 Identities=36% Similarity=0.494 Sum_probs=31.5
Q ss_pred HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
+...+|+|+|+|++|..+++.|+..|...++++|.+
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~ 52 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRT 52 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 456899999999999999999999987788988743
No 89
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=92.22 E-value=0.7 Score=48.87 Aligned_cols=38 Identities=16% Similarity=0.263 Sum_probs=28.9
Q ss_pred cccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCcc
Q psy9783 193 FKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYE 232 (726)
Q Consensus 193 ~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~ 232 (726)
+..+|+|++++ ...+-..+-..|.++++|++.+ +.|+.
T Consensus 58 l~~~DvVid~t-~p~~~~~~~~~al~~G~~vvig-ttG~s 95 (257)
T PRK00048 58 LADADVLIDFT-TPEATLENLEFALEHGKPLVIG-TTGFT 95 (257)
T ss_pred ccCCCEEEECC-CHHHHHHHHHHHHHcCCCEEEE-CCCCC
Confidence 44689999988 4555577788999999999944 66663
No 90
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=92.13 E-value=0.19 Score=53.67 Aligned_cols=35 Identities=31% Similarity=0.579 Sum_probs=32.3
Q ss_pred HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~ 51 (726)
+.+++|+|+|+||+|..+++.|...|+.+|+|++.
T Consensus 121 ~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R 155 (278)
T PRK00258 121 LKGKRILILGAGGAARAVILPLLDLGVAEITIVNR 155 (278)
T ss_pred CCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeC
Confidence 56789999999999999999999999999999864
No 91
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=91.43 E-value=0.26 Score=49.06 Aligned_cols=37 Identities=22% Similarity=0.302 Sum_probs=31.4
Q ss_pred HHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 15 DLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 15 ~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
..|.+++|.|||+|.||.++++.|...|. ++..+|..
T Consensus 32 ~~l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~ 68 (178)
T PF02826_consen 32 RELRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRS 68 (178)
T ss_dssp S-STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESS
T ss_pred cccCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEeccc
Confidence 36789999999999999999999999998 78888754
No 92
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=91.42 E-value=0.71 Score=57.93 Aligned_cols=35 Identities=20% Similarity=0.420 Sum_probs=27.0
Q ss_pred ccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEc
Q psy9783 192 YFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESG 227 (726)
Q Consensus 192 ~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg 227 (726)
+++++|+||+|+-.. .-..+.+.|.++++.+++..
T Consensus 645 ~v~~~DaVIsalP~~-~H~~VAkaAieaGkHvv~ek 679 (1042)
T PLN02819 645 YVSQVDVVISLLPAS-CHAVVAKACIELKKHLVTAS 679 (1042)
T ss_pred hhcCCCEEEECCCch-hhHHHHHHHHHcCCCEEECc
Confidence 456799999999774 34567788999999998653
No 93
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=91.38 E-value=0.54 Score=44.26 Aligned_cols=39 Identities=26% Similarity=0.400 Sum_probs=28.3
Q ss_pred cccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCc
Q psy9783 191 NYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGY 231 (726)
Q Consensus 191 ~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~ 231 (726)
.++..+|+||+.+ ++++-...-++|.++++|+|- ||.|+
T Consensus 63 ~~~~~~DVvIDfT-~p~~~~~~~~~~~~~g~~~Vi-GTTG~ 101 (124)
T PF01113_consen 63 ELLEEADVVIDFT-NPDAVYDNLEYALKHGVPLVI-GTTGF 101 (124)
T ss_dssp HHTTH-SEEEEES--HHHHHHHHHHHHHHT-EEEE-E-SSS
T ss_pred HhcccCCEEEEcC-ChHHhHHHHHHHHhCCCCEEE-ECCCC
Confidence 4566699999999 778888888899999999985 44555
No 94
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=91.35 E-value=0.25 Score=53.21 Aligned_cols=36 Identities=39% Similarity=0.658 Sum_probs=32.3
Q ss_pred HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
+.+++|+|+|+||.|..++-.|+..|+.+|+|+|.+
T Consensus 125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~ 160 (283)
T PRK14027 125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLD 160 (283)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 446789999999999999999999999999998643
No 95
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=91.24 E-value=0.35 Score=50.68 Aligned_cols=31 Identities=26% Similarity=0.551 Sum_probs=25.9
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCC--CeEEEEe
Q psy9783 20 SKVLVVGAGGIGCELLKNLVLSGF--SNIEIVD 50 (726)
Q Consensus 20 ~kVlvVGaGgiGceiaknLal~Gv--~~i~iiD 50 (726)
.+|.|||+|.+|..++..|...|. ..+.++|
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~ 35 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSD 35 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEc
Confidence 479999999999999999999984 3455655
No 96
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=91.09 E-value=0.29 Score=52.85 Aligned_cols=34 Identities=24% Similarity=0.510 Sum_probs=31.5
Q ss_pred HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEe
Q psy9783 17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVD 50 (726)
Q Consensus 17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD 50 (726)
+.+++|+|+|+||.+..++-.|+..|+.+|+|++
T Consensus 122 ~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~n 155 (288)
T PRK12749 122 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFN 155 (288)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEe
Confidence 4667899999999999999999999999999987
No 97
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=91.06 E-value=0.24 Score=56.19 Aligned_cols=35 Identities=26% Similarity=0.415 Sum_probs=32.1
Q ss_pred HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEe
Q psy9783 16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVD 50 (726)
Q Consensus 16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD 50 (726)
.+.+++|+|||+|++|..++++|+..|+.+|+|+.
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~n 212 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLAN 212 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEC
Confidence 46788999999999999999999999999999964
No 98
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=90.63 E-value=0.4 Score=46.27 Aligned_cols=33 Identities=33% Similarity=0.653 Sum_probs=29.5
Q ss_pred CcEEEEcC-chHHHHHHHHHHHhCCC-eEEEEeCC
Q psy9783 20 SKVLVVGA-GGIGCELLKNLVLSGFS-NIEIVDLD 52 (726)
Q Consensus 20 ~kVlvVGa-GgiGceiaknLal~Gv~-~i~iiD~D 52 (726)
.||.|||+ |.+|+.++-.|+..|+. +|.|+|.+
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~ 35 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDIN 35 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccC
Confidence 38999999 99999999999999996 59999843
No 99
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=90.62 E-value=0.32 Score=53.25 Aligned_cols=36 Identities=28% Similarity=0.563 Sum_probs=31.9
Q ss_pred HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
++..||.|||+|.+|..++-.|+..|+..|.|+|-+
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~ 39 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIV 39 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 456799999999999999999999998779999853
No 100
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=90.61 E-value=0.31 Score=55.18 Aligned_cols=36 Identities=33% Similarity=0.511 Sum_probs=33.0
Q ss_pred HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~ 51 (726)
.+.+.+|+|+|+|.+|..+++.|...|+.+++++|.
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~r 212 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANR 212 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeC
Confidence 367789999999999999999999999999999875
No 101
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=90.59 E-value=0.36 Score=51.42 Aligned_cols=39 Identities=26% Similarity=0.492 Sum_probs=33.7
Q ss_pred HHhcCcEEEEcCchHHHHHHHHHHHh----CC------CeEEEEeCCcc
Q psy9783 16 LIKKSKVLVVGAGGIGCELLKNLVLS----GF------SNIEIVDLDTI 54 (726)
Q Consensus 16 kL~~~kVlvVGaGgiGceiaknLal~----Gv------~~i~iiD~D~I 54 (726)
+|.+.||+++|+|+.|+-+++.|+.+ |+ ++|.++|..-+
T Consensus 22 ~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gl 70 (255)
T PF03949_consen 22 KLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGL 70 (255)
T ss_dssp -GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEE
T ss_pred CHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccce
Confidence 58999999999999999999999999 99 79999998754
No 102
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=90.58 E-value=0.35 Score=52.34 Aligned_cols=33 Identities=30% Similarity=0.696 Sum_probs=30.0
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCC-eEEEEeCC
Q psy9783 20 SKVLVVGAGGIGCELLKNLVLSGFS-NIEIVDLD 52 (726)
Q Consensus 20 ~kVlvVGaGgiGceiaknLal~Gv~-~i~iiD~D 52 (726)
+||.|||+|++|+.++..|+..|+. +|.++|.+
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~ 34 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDIN 34 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 3799999999999999999999985 89999864
No 103
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=90.53 E-value=0.3 Score=52.75 Aligned_cols=33 Identities=21% Similarity=0.366 Sum_probs=29.1
Q ss_pred cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
..||+|+|+|+||+.++-.|+++|. .+++++..
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGL-PVRLILRD 34 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCC-CeEEEEec
Confidence 4689999999999999999999994 68888764
No 104
>PTZ00117 malate dehydrogenase; Provisional
Probab=90.50 E-value=0.33 Score=52.99 Aligned_cols=36 Identities=22% Similarity=0.486 Sum_probs=32.4
Q ss_pred HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
..+.||.|||+|.+|..++-.|++.|+..|.|+|-+
T Consensus 3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~ 38 (319)
T PTZ00117 3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVI 38 (319)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECC
Confidence 356799999999999999999999998889999954
No 105
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=89.89 E-value=1.2 Score=52.25 Aligned_cols=44 Identities=25% Similarity=0.399 Sum_probs=37.7
Q ss_pred HHHHHHHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCCcc
Q psy9783 11 KDLEDLIKKSKVLVVGA-GGIGCELLKNLVLSGFSNIEIVDLDTI 54 (726)
Q Consensus 11 ~~~q~kL~~~kVlvVGa-GgiGceiaknLal~Gv~~i~iiD~D~I 54 (726)
......+.+++|+|-|+ |+||+|+++.++..+..+|.++|.|..
T Consensus 242 ~~i~~~~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~ 286 (588)
T COG1086 242 ELIGAMLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEY 286 (588)
T ss_pred HHHHhHcCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchH
Confidence 34567789999999985 569999999999999999999987753
No 106
>PLN02427 UDP-apiose/xylose synthase
Probab=89.84 E-value=1.3 Score=48.83 Aligned_cols=36 Identities=25% Similarity=0.378 Sum_probs=29.6
Q ss_pred HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 16 LIKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 16 kL~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~ 51 (726)
.++.++|||.| +|-||+++++.|+..|-.++..+|.
T Consensus 11 ~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r 47 (386)
T PLN02427 11 PIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDV 47 (386)
T ss_pred cccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEec
Confidence 56678999998 5999999999999985346777774
No 107
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=89.82 E-value=2.6 Score=49.82 Aligned_cols=33 Identities=21% Similarity=0.430 Sum_probs=25.9
Q ss_pred hcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 18 KKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 18 ~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~ 51 (726)
.++.|+|.| .|+||..+++.|+..|. ++.+++.
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LLk~G~-~Vval~R 112 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELLKLGF-RVRAGVR 112 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-eEEEEeC
Confidence 455688888 59999999999999996 4665543
No 108
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=89.71 E-value=2.1 Score=41.56 Aligned_cols=27 Identities=37% Similarity=0.616 Sum_probs=23.4
Q ss_pred EEEEcC-chHHHHHHHHHHHhCCCeEEEE
Q psy9783 22 VLVVGA-GGIGCELLKNLVLSGFSNIEIV 49 (726)
Q Consensus 22 VlvVGa-GgiGceiaknLal~Gv~~i~ii 49 (726)
|+|+|+ |.+|..+++.|...| .+++.+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~-~~V~~~ 28 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG-HEVTAL 28 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEEE
T ss_pred eEEECCCChHHHHHHHHHHHCC-CEEEEE
Confidence 789997 999999999999999 556553
No 109
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=89.68 E-value=0.44 Score=48.64 Aligned_cols=35 Identities=26% Similarity=0.525 Sum_probs=31.2
Q ss_pred HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
|.+++|+|+|+|.+|..+++.|...|. +++++|.+
T Consensus 26 l~gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~~ 60 (200)
T cd01075 26 LEGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADIN 60 (200)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence 677899999999999999999999996 67788754
No 110
>PRK14982 acyl-ACP reductase; Provisional
Probab=89.56 E-value=0.41 Score=53.06 Aligned_cols=37 Identities=32% Similarity=0.477 Sum_probs=31.8
Q ss_pred HHhcCcEEEEcC-chHHHHHHHHHHH-hCCCeEEEEeCC
Q psy9783 16 LIKKSKVLVVGA-GGIGCELLKNLVL-SGFSNIEIVDLD 52 (726)
Q Consensus 16 kL~~~kVlvVGa-GgiGceiaknLal-~Gv~~i~iiD~D 52 (726)
.|.+++|+|+|+ |.||+++++.|+. .|+.++++++.+
T Consensus 152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~ 190 (340)
T PRK14982 152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQ 190 (340)
T ss_pred CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCC
Confidence 467899999998 8999999999985 589999998643
No 111
>PF05237 MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 This putative domain is found in the MoeZ protein and the MoeB protein. The domain has two CXXC motifs that are only partly conserved. MoeZ is necessary for the synthesis of pyridine-2,6-bis(thiocarboxylic acid), a small secreted metabolite that has a high affinity for transition metals, increases iron uptake efficiency by 20% in Pseudomonas stutzeri, has the ability to reduce both soluble and mineral forms of iron, and has antimicrobial activity towards several species of bacteria. MoeB is the molybdopterin synthase activating enzyme in the molybdopterin cofactor biosynthesis pathway. Both these enzymes are members of a superfamily consisting of related but structurally distinct proteins that are members of pathways involved in the transfer of sulphur-containing moieties to metabolites [] and both also contain the UBA/THIF-type NAD/FAD binding fold (IPR000594 from INTERPRO). ; PDB: 1JWA_B 1JW9_B 1JWB_B 1ZKM_D 1ZUD_3 1ZFN_D.
Probab=89.46 E-value=0.39 Score=42.39 Aligned_cols=58 Identities=21% Similarity=0.313 Sum_probs=29.3
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHhhhhcccch--hhhccCCCCCCccccccccCCCCCCCCCCCCC
Q psy9783 506 IPAIATSNAIVAGLVVLHAIHVLQARFSSCQT--VYLRKKPNHRDQMIVPEKYLTAPNPTCPVCSP 569 (726)
Q Consensus 506 IPAIATTnAIVAGLvvlEl~KlL~~k~e~~rn--~flnl~pn~~~~~~vP~~~~~ePnp~C~vC~~ 569 (726)
+.-+.++.++|++++++|++|+|.|.-+...+ .+++...+. .-.+.+ .++|.|.+|+.
T Consensus 23 ~GVlg~~~giigslqA~eaik~l~g~~~~l~~~l~~~D~~~~~-----~~~i~~-~k~~~C~~C~~ 82 (84)
T PF05237_consen 23 AGVLGPVVGIIGSLQANEAIKLLLGIGEPLSGKLLTIDLLNMS-----FRSIRI-KKNPDCPVCGP 82 (84)
T ss_dssp S-B-HHHHHHHHHHHHHHHHHHHCT-S---BTEEEEEETTTTE-----EEEEE-----TT-TTT--
T ss_pred cccccchHHHHHHHHHHHHHHHHHhcCCchhhheeeEECCCCe-----EEEEec-CCCccCcCcCc
Confidence 34577888999999999999999974222121 222332111 111222 37999999976
No 112
>PRK06197 short chain dehydrogenase; Provisional
Probab=89.42 E-value=0.9 Score=48.27 Aligned_cols=37 Identities=19% Similarity=0.197 Sum_probs=30.4
Q ss_pred HHHHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 14 EDLIKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 14 q~kL~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~ 51 (726)
...+.+++|+|.| .||||.++++.|+..|. ++.+++.
T Consensus 11 ~~~~~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r 48 (306)
T PRK06197 11 IPDQSGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVR 48 (306)
T ss_pred cccCCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeC
Confidence 3457788899998 59999999999999996 5767653
No 113
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=89.22 E-value=0.47 Score=51.51 Aligned_cols=36 Identities=39% Similarity=0.574 Sum_probs=32.9
Q ss_pred HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
+...+|+|+|+|.+|..+++.|...|..+|+++|.+
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~ 211 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRT 211 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 578999999999999999999999999999998754
No 114
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=89.12 E-value=0.47 Score=53.70 Aligned_cols=36 Identities=33% Similarity=0.537 Sum_probs=32.8
Q ss_pred HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
+.+.+|+|+|+|++|..+++.|...|+.+++++|.+
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~ 215 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRT 215 (423)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCC
Confidence 677899999999999999999999999999998654
No 115
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=89.10 E-value=0.48 Score=51.70 Aligned_cols=33 Identities=33% Similarity=0.653 Sum_probs=30.0
Q ss_pred cCcEEEEcCchHHHHHHHHHHHhCCC-eEEEEeC
Q psy9783 19 KSKVLVVGAGGIGCELLKNLVLSGFS-NIEIVDL 51 (726)
Q Consensus 19 ~~kVlvVGaGgiGceiaknLal~Gv~-~i~iiD~ 51 (726)
..||.|||||.+|+.++-.|+..|+. +|.|+|-
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~ 39 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDI 39 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 46999999999999999999999985 7999984
No 116
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=89.02 E-value=3.4 Score=44.47 Aligned_cols=31 Identities=19% Similarity=0.419 Sum_probs=27.5
Q ss_pred cEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 21 kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
+|.+||+|.+|..++++|+..|. ++.+.|.+
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~-~v~v~dr~ 32 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGH-EVVGYDRN 32 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCC-eEEEEECC
Confidence 79999999999999999999996 57787765
No 117
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=88.98 E-value=0.37 Score=51.30 Aligned_cols=40 Identities=28% Similarity=0.292 Sum_probs=36.1
Q ss_pred HHHhcCcEEEEcCchHHHHHHHHHHHhCCC----------eEEEEeCCcc
Q psy9783 15 DLIKKSKVLVVGAGGIGCELLKNLVLSGFS----------NIEIVDLDTI 54 (726)
Q Consensus 15 ~kL~~~kVlvVGaGgiGceiaknLal~Gv~----------~i~iiD~D~I 54 (726)
.+|.+.||+++|+|+.|.-+++.|..+|++ +|.++|..-+
T Consensus 21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gl 70 (254)
T cd00762 21 KKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGL 70 (254)
T ss_pred CChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCe
Confidence 468889999999999999999999999997 9999997754
No 118
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=88.85 E-value=3.3 Score=44.85 Aligned_cols=32 Identities=31% Similarity=0.408 Sum_probs=25.9
Q ss_pred CcEEEEcC-chHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 20 SKVLVVGA-GGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 20 ~kVlvVGa-GgiGceiaknLal~Gv~~i~iiD~ 51 (726)
++|||.|+ |-||+++++.|...|=.++..+|.
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r 34 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDM 34 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeC
Confidence 47999996 999999999999764246777764
No 119
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=88.79 E-value=0.53 Score=50.83 Aligned_cols=40 Identities=25% Similarity=0.483 Sum_probs=35.8
Q ss_pred HHHhcCcEEEEcCchHHHHHHHHHHHh----CC------CeEEEEeCCcc
Q psy9783 15 DLIKKSKVLVVGAGGIGCELLKNLVLS----GF------SNIEIVDLDTI 54 (726)
Q Consensus 15 ~kL~~~kVlvVGaGgiGceiaknLal~----Gv------~~i~iiD~D~I 54 (726)
.+|.+.||+++|+|+.|+-+++.|+.+ |+ ++|.++|.+-+
T Consensus 21 ~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gl 70 (279)
T cd05312 21 KPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGL 70 (279)
T ss_pred CChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCe
Confidence 467889999999999999999999998 99 69999997754
No 120
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=88.73 E-value=0.58 Score=46.78 Aligned_cols=35 Identities=26% Similarity=0.303 Sum_probs=30.8
Q ss_pred HHhcCcEEEEcCchH-HHHHHHHHHHhCCCeEEEEeC
Q psy9783 16 LIKKSKVLVVGAGGI-GCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 16 kL~~~kVlvVGaGgi-GceiaknLal~Gv~~i~iiD~ 51 (726)
.|.+++|+|||+|.+ |..++++|...|+ ++++++.
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r 76 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHS 76 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEEC
Confidence 368899999999985 8889999999998 6888874
No 121
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=88.70 E-value=0.57 Score=49.58 Aligned_cols=31 Identities=29% Similarity=0.511 Sum_probs=27.8
Q ss_pred cEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 21 kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
+|+|+|+|++|+.++..|+..| .+++++|.+
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g-~~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAG-HDVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCC-CeEEEEECC
Confidence 7999999999999999999999 468888853
No 122
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=88.63 E-value=0.54 Score=50.69 Aligned_cols=35 Identities=23% Similarity=0.336 Sum_probs=31.3
Q ss_pred HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~ 51 (726)
.|.+++|+|+|+|++|..+++.|...|. +++++|.
T Consensus 148 ~l~gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R 182 (287)
T TIGR02853 148 TIHGSNVMVLGFGRTGMTIARTFSALGA-RVFVGAR 182 (287)
T ss_pred CCCCCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeC
Confidence 4678999999999999999999999997 8888774
No 123
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=88.46 E-value=0.65 Score=49.82 Aligned_cols=32 Identities=28% Similarity=0.375 Sum_probs=30.0
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~ 51 (726)
++|+|+|+||.|..++-.|+..|+.+|+|++.
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR 154 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDAGFTDGTIVAR 154 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence 58999999999999999999999999999874
No 124
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=88.35 E-value=0.54 Score=52.07 Aligned_cols=34 Identities=26% Similarity=0.362 Sum_probs=31.9
Q ss_pred HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEE
Q psy9783 16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIV 49 (726)
Q Consensus 16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~ii 49 (726)
.|.+++|||||+|-+|..++++|...|+++|+|.
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~ 204 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFC 204 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEE
Confidence 4788999999999999999999999999999995
No 125
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=88.14 E-value=0.61 Score=50.38 Aligned_cols=33 Identities=18% Similarity=0.302 Sum_probs=28.8
Q ss_pred cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
+.+|+|||+|++|+.++..|+.+| ..++++..+
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g-~~V~~~~r~ 37 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAG-FDVHFLLRS 37 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCC-CeEEEEEeC
Confidence 468999999999999999999999 567887654
No 126
>PRK07063 short chain dehydrogenase; Provisional
Probab=88.11 E-value=2 Score=44.19 Aligned_cols=34 Identities=26% Similarity=0.486 Sum_probs=28.8
Q ss_pred HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEe
Q psy9783 16 LIKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVD 50 (726)
Q Consensus 16 kL~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD 50 (726)
+|.+++|+|.| .||||.++++.|+..|. ++.++|
T Consensus 4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~ 38 (260)
T PRK07063 4 RLAGKVALVTGAAQGIGAAIARAFAREGA-AVALAD 38 (260)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEe
Confidence 36778899998 68999999999999996 477776
No 127
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=87.97 E-value=0.48 Score=51.45 Aligned_cols=41 Identities=37% Similarity=0.600 Sum_probs=31.7
Q ss_pred EEEEc-CchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcC
Q psy9783 22 VLVVG-AGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQ 62 (726)
Q Consensus 22 VlvVG-aGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQ 62 (726)
|||.| +|.||+|+++.|+..|..+|.++|.|.-...++.+.
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~ 42 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERE 42 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHH
T ss_pred CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHH
Confidence 67886 889999999999999999999999886544444443
No 128
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=87.89 E-value=0.66 Score=48.18 Aligned_cols=38 Identities=29% Similarity=0.367 Sum_probs=34.8
Q ss_pred HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783 16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDT 53 (726)
Q Consensus 16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~ 53 (726)
.|..++|+|.|.|.+|..+++.|...|..-+.+.|.+-
T Consensus 20 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g 57 (217)
T cd05211 20 SLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG 57 (217)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence 46789999999999999999999999999999999663
No 129
>PRK09242 tropinone reductase; Provisional
Probab=87.88 E-value=1.8 Score=44.31 Aligned_cols=35 Identities=23% Similarity=0.420 Sum_probs=29.5
Q ss_pred HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 16 LIKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 16 kL~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~ 51 (726)
.+.+++++|+| .||||.++++.|+..|. ++.+++.
T Consensus 6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r 41 (257)
T PRK09242 6 RLDGQTALITGASKGIGLAIAREFLGLGA-DVLIVAR 41 (257)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeC
Confidence 36778999998 58999999999999996 5777764
No 130
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=87.71 E-value=2.4 Score=46.22 Aligned_cols=36 Identities=28% Similarity=0.373 Sum_probs=30.0
Q ss_pred HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 16 LIKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 16 kL~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
+++.++|+|.| +|-||+++++.|...|. +++.+|..
T Consensus 12 ~~~~~~vlVtGatGfiG~~lv~~L~~~g~-~V~~~d~~ 48 (348)
T PRK15181 12 VLAPKRWLITGVAGFIGSGLLEELLFLNQ-TVIGLDNF 48 (348)
T ss_pred cccCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 35568999999 59999999999999984 67788753
No 131
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=87.49 E-value=0.67 Score=46.47 Aligned_cols=31 Identities=29% Similarity=0.560 Sum_probs=26.0
Q ss_pred cEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 21 kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
+|.|||+|.+|.-++-.+++.|+ +++++|.+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~ 31 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRS 31 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SS
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECC
Confidence 68999999999999999999994 58998864
No 132
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=87.48 E-value=0.7 Score=50.40 Aligned_cols=31 Identities=35% Similarity=0.710 Sum_probs=28.4
Q ss_pred cEEEEcCchHHHHHHHHHHHhCC-CeEEEEeC
Q psy9783 21 KVLVVGAGGIGCELLKNLVLSGF-SNIEIVDL 51 (726)
Q Consensus 21 kVlvVGaGgiGceiaknLal~Gv-~~i~iiD~ 51 (726)
||.|||+|.+|+.+|-.|+..|+ ++|.|+|-
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di 32 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDV 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 68999999999999999999998 57999984
No 133
>PLN00203 glutamyl-tRNA reductase
Probab=87.41 E-value=0.62 Score=54.38 Aligned_cols=35 Identities=37% Similarity=0.610 Sum_probs=31.9
Q ss_pred HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~ 51 (726)
|.+++|+|||+|.+|..+++.|...|+.+|++++.
T Consensus 264 l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nR 298 (519)
T PLN00203 264 HASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNR 298 (519)
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 55789999999999999999999999999999763
No 134
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=87.41 E-value=0.66 Score=50.57 Aligned_cols=29 Identities=34% Similarity=0.651 Sum_probs=25.9
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEE
Q psy9783 20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIV 49 (726)
Q Consensus 20 ~kVlvVGaGgiGceiaknLal~Gv~~i~ii 49 (726)
.||+|+|+|++||.++-.|+++| ..++++
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g-~~V~~~ 29 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG-HDVTLL 29 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC-CeEEEE
Confidence 48999999999999999999999 766664
No 135
>PRK05854 short chain dehydrogenase; Provisional
Probab=87.24 E-value=2 Score=46.27 Aligned_cols=35 Identities=20% Similarity=0.370 Sum_probs=28.6
Q ss_pred HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 16 LIKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 16 kL~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~ 51 (726)
.|.+++++|.| .||||.++++.|+..|. ++.+++.
T Consensus 11 ~l~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R 46 (313)
T PRK05854 11 DLSGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVR 46 (313)
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 35678888887 78999999999999995 6777653
No 136
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=87.15 E-value=3.5 Score=46.36 Aligned_cols=32 Identities=34% Similarity=0.639 Sum_probs=27.8
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
++|+|+|+|.+|..+++.|...|. .++++|.|
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~-~v~vid~~ 32 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENN-DVTVIDTD 32 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-cEEEEECC
Confidence 379999999999999999999886 57788854
No 137
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=86.85 E-value=0.85 Score=48.72 Aligned_cols=32 Identities=28% Similarity=0.567 Sum_probs=28.9
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
.+|.|||+|.+|+.++..|+..|. +++++|.+
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~ 35 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVS 35 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCC
Confidence 579999999999999999999997 68888854
No 138
>PRK08618 ornithine cyclodeaminase; Validated
Probab=86.78 E-value=2.2 Score=46.69 Aligned_cols=35 Identities=11% Similarity=0.333 Sum_probs=29.1
Q ss_pred hcCcEEEEcCchHHHHHHHHHH-HhCCCeEEEEeCC
Q psy9783 18 KKSKVLVVGAGGIGCELLKNLV-LSGFSNIEIVDLD 52 (726)
Q Consensus 18 ~~~kVlvVGaGgiGceiaknLa-l~Gv~~i~iiD~D 52 (726)
..++|+|||+|+.|-..+..|. ..|+.++.|+|.+
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~ 161 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRT 161 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCC
Confidence 4678999999999998888775 5689999998644
No 139
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=86.75 E-value=0.96 Score=47.75 Aligned_cols=34 Identities=24% Similarity=0.444 Sum_probs=31.0
Q ss_pred cEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccC
Q psy9783 21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTID 55 (726)
Q Consensus 21 kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie 55 (726)
.|+|||+|-+|+.+|-.|++.|. +++|+|.+.+-
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~-~V~l~e~~~~~ 34 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGH-SVTLLERGDIG 34 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTS-EEEEEESSSTT
T ss_pred CEEEECcCHHHHHHHHHHHHCCC-eEEEEeecccc
Confidence 38999999999999999999998 89999999553
No 140
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=86.73 E-value=1.1 Score=49.63 Aligned_cols=37 Identities=24% Similarity=0.468 Sum_probs=32.5
Q ss_pred cCcEEEEcCchHHHHHHHHHHHh-CCCeEEEEeCCccC
Q psy9783 19 KSKVLVVGAGGIGCELLKNLVLS-GFSNIEIVDLDTID 55 (726)
Q Consensus 19 ~~kVlvVGaGgiGceiaknLal~-Gv~~i~iiD~D~Ie 55 (726)
...|+|||+|-+|+.+|-.|++. |..+++|+|.+.+-
T Consensus 30 ~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~~ 67 (407)
T TIGR01373 30 TYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLG 67 (407)
T ss_pred cCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccccc
Confidence 45799999999999999999985 88789999987654
No 141
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=86.71 E-value=3.8 Score=42.17 Aligned_cols=26 Identities=27% Similarity=0.531 Sum_probs=23.1
Q ss_pred hcCcEEEEcCchHHHHHHHHHHHhCC
Q psy9783 18 KKSKVLVVGAGGIGCELLKNLVLSGF 43 (726)
Q Consensus 18 ~~~kVlvVGaGgiGceiaknLal~Gv 43 (726)
...||.|||+|.+|..+++.|+..|.
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~ 28 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSK 28 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCC
Confidence 35689999999999999999998873
No 142
>PLN02206 UDP-glucuronate decarboxylase
Probab=86.66 E-value=4.5 Score=46.23 Aligned_cols=33 Identities=36% Similarity=0.549 Sum_probs=27.7
Q ss_pred hcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 18 KKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 18 ~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~ 51 (726)
+.+||||.| +|-||+++++.|...|. ++.++|.
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~-~V~~ld~ 151 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARGD-SVIVVDN 151 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCcC-EEEEEeC
Confidence 557899999 69999999999999995 4666664
No 143
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=86.58 E-value=0.78 Score=49.81 Aligned_cols=35 Identities=23% Similarity=0.282 Sum_probs=31.1
Q ss_pred cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCcc
Q psy9783 19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTI 54 (726)
Q Consensus 19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~I 54 (726)
...|+|||+|-+|+.+|..|++.|. +++|+|.+.+
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~g~-~V~lie~~~~ 37 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARRGL-RVLGLDRFMP 37 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCC-eEEEEecccC
Confidence 3569999999999999999999996 6999998754
No 144
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=86.53 E-value=0.87 Score=50.46 Aligned_cols=33 Identities=27% Similarity=0.475 Sum_probs=30.3
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783 20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDT 53 (726)
Q Consensus 20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~ 53 (726)
++|+|||+|-+|+.+|-.|++.|. +++|+|.+.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~-~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGY-QVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCC
Confidence 489999999999999999999996 699999875
No 145
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=86.52 E-value=0.67 Score=48.74 Aligned_cols=44 Identities=20% Similarity=0.406 Sum_probs=37.2
Q ss_pred EeeecchhhhhhhhchhhhhhccccCcchhhhHHHHHHhhCCCC
Q psy9783 131 IVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDA 174 (726)
Q Consensus 131 i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~~~ak~~~~~~np~~ 174 (726)
|+..-...++-.+||||++|...++|++|++++++.+.++||++
T Consensus 51 i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v 94 (240)
T TIGR02355 51 LTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHI 94 (240)
T ss_pred EEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCc
Confidence 33344445677899999999999999999999999999999974
No 146
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=86.51 E-value=0.86 Score=50.34 Aligned_cols=36 Identities=28% Similarity=0.373 Sum_probs=32.0
Q ss_pred HHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEe
Q psy9783 14 EDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVD 50 (726)
Q Consensus 14 q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD 50 (726)
.+.|++++|.|||.|.+|..+|++|..+|+ ++.+.|
T Consensus 11 ~~~LkgKtVGIIG~GsIG~amA~nL~d~G~-~ViV~~ 46 (335)
T PRK13403 11 VELLQGKTVAVIGYGSQGHAQAQNLRDSGV-EVVVGV 46 (335)
T ss_pred hhhhCcCEEEEEeEcHHHHHHHHHHHHCcC-EEEEEE
Confidence 578999999999999999999999999998 466655
No 147
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=86.25 E-value=1.1 Score=42.52 Aligned_cols=28 Identities=32% Similarity=0.670 Sum_probs=24.2
Q ss_pred EEEEcCchHHHHHHHHHHHhCCCeEEEEe
Q psy9783 22 VLVVGAGGIGCELLKNLVLSGFSNIEIVD 50 (726)
Q Consensus 22 VlvVGaGgiGceiaknLal~Gv~~i~iiD 50 (726)
|+|+|+|++|+.++-.|...|.. +++++
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~-V~l~~ 28 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHD-VTLVS 28 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCE-EEEEE
T ss_pred CEEECcCHHHHHHHHHHHHCCCc-eEEEE
Confidence 78999999999999999997754 77765
No 148
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=85.93 E-value=0.88 Score=51.89 Aligned_cols=36 Identities=25% Similarity=0.361 Sum_probs=32.4
Q ss_pred HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783 17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDT 53 (726)
Q Consensus 17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~ 53 (726)
+.+++|+|+|+|.+|..+++.|..+|+ +++++|.|.
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp 245 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDP 245 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCc
Confidence 578899999999999999999999998 699988653
No 149
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=85.86 E-value=0.72 Score=52.21 Aligned_cols=40 Identities=33% Similarity=0.527 Sum_probs=36.1
Q ss_pred HHHhcCcEEEEcCchHHHHHHHHHHHhCCC--eEEEEeCCcc
Q psy9783 15 DLIKKSKVLVVGAGGIGCELLKNLVLSGFS--NIEIVDLDTI 54 (726)
Q Consensus 15 ~kL~~~kVlvVGaGgiGceiaknLal~Gv~--~i~iiD~D~I 54 (726)
++|+..||++.|+|+.|+.+++.|..+|+. +|.++|.--+
T Consensus 195 k~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~ 236 (432)
T COG0281 195 KKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGL 236 (432)
T ss_pred CCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCc
Confidence 468889999999999999999999999998 9999996533
No 150
>PRK06223 malate dehydrogenase; Reviewed
Probab=85.78 E-value=1 Score=48.34 Aligned_cols=32 Identities=28% Similarity=0.632 Sum_probs=29.5
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~ 51 (726)
.||.|||+|.+|..++-.|+..|.+++.++|-
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~ 34 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDI 34 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEEC
Confidence 58999999999999999999998669999986
No 151
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.57 E-value=1.1 Score=47.83 Aligned_cols=33 Identities=30% Similarity=0.539 Sum_probs=28.8
Q ss_pred cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
-++|.|||+|.+|..++.+|+..|. .++++|.+
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~ 36 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVS 36 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCC
Confidence 3689999999999999999999996 58888744
No 152
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=85.55 E-value=1 Score=49.20 Aligned_cols=33 Identities=30% Similarity=0.613 Sum_probs=29.9
Q ss_pred cCcEEEEcCchHHHHHHHHHHHhCCC-eEEEEeC
Q psy9783 19 KSKVLVVGAGGIGCELLKNLVLSGFS-NIEIVDL 51 (726)
Q Consensus 19 ~~kVlvVGaGgiGceiaknLal~Gv~-~i~iiD~ 51 (726)
..||.|||+|.+|+.++-.|+..|.. +|.|+|-
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~ 36 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDV 36 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 46999999999999999999999985 6999984
No 153
>PRK13243 glyoxylate reductase; Reviewed
Probab=85.50 E-value=0.97 Score=49.73 Aligned_cols=35 Identities=17% Similarity=0.181 Sum_probs=31.0
Q ss_pred HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~ 51 (726)
.|.+++|.|||+|.||.++++.|...|. ++..+|.
T Consensus 147 ~L~gktvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~ 181 (333)
T PRK13243 147 DVYGKTIGIIGFGRIGQAVARRAKGFGM-RILYYSR 181 (333)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECC
Confidence 5889999999999999999999998886 5777774
No 154
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=85.48 E-value=1.1 Score=48.58 Aligned_cols=35 Identities=34% Similarity=0.457 Sum_probs=31.7
Q ss_pred HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
+.+++|+|+|+|++|-.+++.|..+|. +++++|.+
T Consensus 150 l~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~ 184 (296)
T PRK08306 150 IHGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARK 184 (296)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence 468999999999999999999999997 89998754
No 155
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=85.46 E-value=1.2 Score=48.41 Aligned_cols=40 Identities=18% Similarity=0.311 Sum_probs=35.4
Q ss_pred hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccC
Q psy9783 18 KKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSN 58 (726)
Q Consensus 18 ~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sN 58 (726)
.+.+|+|||+|-+|+.+|-.|++.|. +++++|.+.+-..+
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~-~V~vie~~~~~~g~ 42 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGA-DVTVLEAGEAGGGA 42 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCC-EEEEEecCccCCcc
Confidence 45789999999999999999999999 99999988885433
No 156
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=85.41 E-value=0.93 Score=53.00 Aligned_cols=34 Identities=26% Similarity=0.377 Sum_probs=30.5
Q ss_pred HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~ 51 (726)
+.+++|+|+|+||+|..++..|+..|+ +|.+++.
T Consensus 377 ~~~k~vlIlGaGGagrAia~~L~~~G~-~V~i~nR 410 (529)
T PLN02520 377 LAGKLFVVIGAGGAGKALAYGAKEKGA-RVVIANR 410 (529)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcC
Confidence 457889999999999999999999999 8998763
No 157
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=85.39 E-value=4.3 Score=49.26 Aligned_cols=91 Identities=11% Similarity=0.037 Sum_probs=50.5
Q ss_pred cccccEEEEcc-CcHHHHHHHHHHhhhcCC--cEEEEccCCccc-eEEEEeCCCCcceecCCCCCCCCCCCccccCCCCC
Q psy9783 193 FKQFTLVMNAL-DNRAARNHVNRMCLASEV--PLIESGTAGYEG-QVELIKKGETKCYECDPKPAAKTYPGCTIRNTPSE 268 (726)
Q Consensus 193 ~~~~DlVi~al-Dn~~aR~~in~~c~~~~i--PlI~sg~~G~~G-~v~~i~p~~t~cy~C~~~~~~~~~p~Cti~~~p~~ 268 (726)
++++|+||.|+ .+.+....+-+..-..-. .+|.+-|.++.= .+.-.......+...++-.++...|..-|-..+.+
T Consensus 390 ~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~g~Hff~P~~~~~lVEvv~g~~T 469 (715)
T PRK11730 390 FERVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKT 469 (715)
T ss_pred hcCCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEEEEecCCcccccceEEeeCCCCC
Confidence 68999999984 566665555444433322 366666665421 11111122233555555544445566666666666
Q ss_pred cchhhhhHhHHhHHH
Q psy9783 269 PIHCIVWAKHLFNYL 283 (726)
Q Consensus 269 ~~h~i~~a~~lf~~l 283 (726)
...++.++..+...+
T Consensus 470 ~~~~~~~~~~~~~~l 484 (715)
T PRK11730 470 SDETIATVVAYASKM 484 (715)
T ss_pred CHHHHHHHHHHHHHh
Confidence 777777777765543
No 158
>PRK08251 short chain dehydrogenase; Provisional
Probab=85.31 E-value=4.2 Score=41.28 Aligned_cols=32 Identities=19% Similarity=0.574 Sum_probs=27.1
Q ss_pred cCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 19 KSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 19 ~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~ 51 (726)
+++++|.| .||||.++++.|+..|. ++.+++.
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~-~v~~~~r 34 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGR-DLALCAR 34 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeC
Confidence 46788887 89999999999999994 6777764
No 159
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=85.23 E-value=3.7 Score=42.93 Aligned_cols=38 Identities=21% Similarity=0.303 Sum_probs=33.5
Q ss_pred HHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 15 DLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 15 ~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
..|+.++|+|.|.|.+|..+++.|...|+.-+.|.|.+
T Consensus 27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~ 64 (227)
T cd01076 27 IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSD 64 (227)
T ss_pred CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence 34788999999999999999999999998877788864
No 160
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=85.14 E-value=1.1 Score=51.35 Aligned_cols=34 Identities=29% Similarity=0.424 Sum_probs=29.7
Q ss_pred cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783 19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDT 53 (726)
Q Consensus 19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~ 53 (726)
..+|+|||+|-+||+.|-.|++.|+. ++|+|+..
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl~-V~LiE~rp 35 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGVP-VELYEMRP 35 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCc-EEEEEccC
Confidence 35799999999999999999999975 88888643
No 161
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.09 E-value=1.1 Score=47.65 Aligned_cols=32 Identities=38% Similarity=0.661 Sum_probs=28.5
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
++|.|||+|.+|..++.+|+..|. +++++|.+
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~ 33 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIK 33 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCC-cEEEEeCC
Confidence 479999999999999999999996 58888865
No 162
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=85.05 E-value=1 Score=49.46 Aligned_cols=33 Identities=36% Similarity=0.701 Sum_probs=30.4
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCC-eEEEEeCC
Q psy9783 20 SKVLVVGAGGIGCELLKNLVLSGFS-NIEIVDLD 52 (726)
Q Consensus 20 ~kVlvVGaGgiGceiaknLal~Gv~-~i~iiD~D 52 (726)
.||.|||+|.+|+.+|-.|+.-|++ ++.|+|-.
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~ 34 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDIN 34 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcc
Confidence 4899999999999999999999999 99999944
No 163
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=85.05 E-value=1.2 Score=48.25 Aligned_cols=31 Identities=45% Similarity=0.690 Sum_probs=28.8
Q ss_pred cEEEEcCchHHHHHHHHHHHhCC-CeEEEEeC
Q psy9783 21 KVLVVGAGGIGCELLKNLVLSGF-SNIEIVDL 51 (726)
Q Consensus 21 kVlvVGaGgiGceiaknLal~Gv-~~i~iiD~ 51 (726)
||.|||+|.+|+.++-.|+..|+ .++.++|.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~ 33 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDI 33 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEEC
Confidence 79999999999999999999996 68999994
No 164
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=84.81 E-value=1.2 Score=49.06 Aligned_cols=36 Identities=28% Similarity=0.317 Sum_probs=31.5
Q ss_pred HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
.|.+++|.|||+|.||..+++.|...|. ++..+|..
T Consensus 143 ~l~g~~VgIIG~G~IG~~vA~~L~~~G~-~V~~~d~~ 178 (330)
T PRK12480 143 PVKNMTVAIIGTGRIGAATAKIYAGFGA-TITAYDAY 178 (330)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCC
Confidence 5888999999999999999999998886 57788743
No 165
>PRK08655 prephenate dehydrogenase; Provisional
Probab=84.81 E-value=1.5 Score=50.05 Aligned_cols=31 Identities=29% Similarity=0.578 Sum_probs=26.9
Q ss_pred cEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 21 KVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 21 kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
+|+||| +|++|..+++.|...|. +++++|.+
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~-~V~v~~r~ 33 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGF-EVIVTGRD 33 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence 799997 89999999999999995 68887753
No 166
>PRK12367 short chain dehydrogenase; Provisional
Probab=84.78 E-value=1.6 Score=45.60 Aligned_cols=41 Identities=17% Similarity=0.229 Sum_probs=34.8
Q ss_pred HHHHHHHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 11 KDLEDLIKKSKVLVVGA-GGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 11 ~~~q~kL~~~kVlvVGa-GgiGceiaknLal~Gv~~i~iiD~D 52 (726)
+-.|.++..++++|.|+ ||||.++++.|+..|. ++.+++.+
T Consensus 6 ~~~~~~l~~k~~lITGas~gIG~ala~~l~~~G~-~Vi~~~r~ 47 (245)
T PRK12367 6 PMAQSTWQGKRIGITGASGALGKALTKAFRAKGA-KVIGLTHS 47 (245)
T ss_pred hhhHHhhCCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence 34688999999999985 8999999999999996 57777754
No 167
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=84.68 E-value=1.3 Score=48.06 Aligned_cols=32 Identities=31% Similarity=0.526 Sum_probs=30.1
Q ss_pred cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEe
Q psy9783 19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVD 50 (726)
Q Consensus 19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD 50 (726)
..+|+|+|+||.+-.++-.|+..|+.+|+|+.
T Consensus 126 ~~~vlilGAGGAarAv~~aL~~~g~~~i~V~N 157 (283)
T COG0169 126 GKRVLILGAGGAARAVAFALAEAGAKRITVVN 157 (283)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEe
Confidence 57899999999999999999999999999964
No 168
>PRK07062 short chain dehydrogenase; Provisional
Probab=84.58 E-value=3.3 Score=42.69 Aligned_cols=35 Identities=29% Similarity=0.463 Sum_probs=28.8
Q ss_pred HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 17 IKKSKVLVVGA-GGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 17 L~~~kVlvVGa-GgiGceiaknLal~Gv~~i~iiD~D 52 (726)
|.++.++|.|+ ||||.++++.|+..|.. +.+++.+
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G~~-V~~~~r~ 41 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGAS-VAICGRD 41 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeCC
Confidence 56788999985 79999999999999974 7777643
No 169
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=84.56 E-value=1.2 Score=48.39 Aligned_cols=33 Identities=30% Similarity=0.450 Sum_probs=29.7
Q ss_pred cEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCcc
Q psy9783 21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTI 54 (726)
Q Consensus 21 kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~I 54 (726)
.|+|||+|-+|+.+|..|++.|. +++|+|...+
T Consensus 2 dvvIIGaGi~G~s~A~~La~~g~-~V~l~e~~~~ 34 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKHGK-KTLLLEQFDL 34 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCC
Confidence 58999999999999999999996 6999998654
No 170
>PLN02928 oxidoreductase family protein
Probab=84.55 E-value=1 Score=49.94 Aligned_cols=35 Identities=29% Similarity=0.378 Sum_probs=30.9
Q ss_pred HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~ 51 (726)
.|.+++|.|||+|.||.++++.|...|. ++..+|.
T Consensus 156 ~l~gktvGIiG~G~IG~~vA~~l~afG~-~V~~~dr 190 (347)
T PLN02928 156 TLFGKTVFILGYGAIGIELAKRLRPFGV-KLLATRR 190 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECC
Confidence 5889999999999999999999998887 6777764
No 171
>CHL00194 ycf39 Ycf39; Provisional
Probab=84.48 E-value=7.3 Score=41.80 Aligned_cols=30 Identities=20% Similarity=0.560 Sum_probs=25.4
Q ss_pred cEEEEc-CchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 21 KVLVVG-AGGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 21 kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~ 51 (726)
+|+|.| .|-+|.++++.|...|. +++.++.
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~-~V~~l~R 32 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGY-QVRCLVR 32 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCC-eEEEEEc
Confidence 799999 59999999999999995 5776653
No 172
>PRK08264 short chain dehydrogenase; Validated
Probab=84.44 E-value=1.3 Score=44.67 Aligned_cols=36 Identities=33% Similarity=0.499 Sum_probs=31.4
Q ss_pred HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 17 IKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 17 L~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
+.+++|+|.| .|+||.++++.|+..|..++.+++.+
T Consensus 4 ~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~ 40 (238)
T PRK08264 4 IKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARD 40 (238)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecC
Confidence 4667899998 69999999999999998778888754
No 173
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.38 E-value=1.1 Score=51.09 Aligned_cols=35 Identities=26% Similarity=0.327 Sum_probs=31.0
Q ss_pred HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
+..++|+|+|+|++|.++|+.|...|. +++++|..
T Consensus 14 ~~~~~v~viG~G~~G~~~A~~L~~~G~-~V~~~d~~ 48 (480)
T PRK01438 14 WQGLRVVVAGLGVSGFAAADALLELGA-RVTVVDDG 48 (480)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 457799999999999999999999997 59999854
No 174
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=84.30 E-value=1.3 Score=48.95 Aligned_cols=32 Identities=28% Similarity=0.523 Sum_probs=29.4
Q ss_pred cEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783 21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDT 53 (726)
Q Consensus 21 kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~ 53 (726)
+|+|||+|-+|+.+|..|++.|. +++|+|.+.
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~-~V~vle~~~ 33 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGH-EVTVIDRQP 33 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence 69999999999999999999995 699999874
No 175
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=84.28 E-value=1.2 Score=49.66 Aligned_cols=35 Identities=23% Similarity=0.434 Sum_probs=31.6
Q ss_pred HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
+...+|+|+|+|.+|..+++.|..+|+ +++++|.+
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~ 199 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDIN 199 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECC
Confidence 567889999999999999999999998 69999864
No 176
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=84.23 E-value=1.3 Score=47.89 Aligned_cols=32 Identities=28% Similarity=0.445 Sum_probs=28.6
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
.+|.|||+|.+|+.++.+|+..|. +++++|.+
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~-~V~v~d~~ 34 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGH-EVRLWDAD 34 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCC-eeEEEeCC
Confidence 379999999999999999999996 68898855
No 177
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=84.22 E-value=4.2 Score=43.03 Aligned_cols=31 Identities=39% Similarity=0.575 Sum_probs=26.6
Q ss_pred EEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 22 VLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 22 VlvVG-aGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
|||.| +|-||+++++.|+..|...+.++|..
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~~~v~~~~~~ 33 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNL 33 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCCceEEEecCC
Confidence 68887 69999999999999998778887753
No 178
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=84.18 E-value=1.3 Score=47.72 Aligned_cols=34 Identities=26% Similarity=0.376 Sum_probs=29.3
Q ss_pred cCcEEEEcCchHHHHHHHHHHHhCC-CeEEEEeCC
Q psy9783 19 KSKVLVVGAGGIGCELLKNLVLSGF-SNIEIVDLD 52 (726)
Q Consensus 19 ~~kVlvVGaGgiGceiaknLal~Gv-~~i~iiD~D 52 (726)
..+|+|||+|.+|..++..|...|+ .+++++|.+
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~ 40 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRS 40 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 3589999999999999999999997 478888753
No 179
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=84.10 E-value=1.1 Score=45.30 Aligned_cols=35 Identities=20% Similarity=0.457 Sum_probs=30.0
Q ss_pred HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 17 IKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 17 L~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
+.+++|+|+| .|+||.++++.|+..|.. +.+++.+
T Consensus 3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~-V~~~~r~ 38 (251)
T PRK07231 3 LEGKVAIVTGASSGIGEGIARRFAAEGAR-VVVTDRN 38 (251)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCC
Confidence 5678999998 589999999999999975 8888754
No 180
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=84.02 E-value=0.71 Score=50.42 Aligned_cols=35 Identities=20% Similarity=0.313 Sum_probs=30.4
Q ss_pred HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~ 51 (726)
.+..++|.|||.|.||.++++.|...|+ ++..+|.
T Consensus 133 ~l~g~tvgIvG~G~IG~~vA~~l~afG~-~V~~~~~ 167 (312)
T PRK15469 133 HREDFTIGILGAGVLGSKVAQSLQTWGF-PLRCWSR 167 (312)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence 4788999999999999999999998887 4667764
No 181
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=83.98 E-value=1.4 Score=46.63 Aligned_cols=33 Identities=27% Similarity=0.470 Sum_probs=29.2
Q ss_pred hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 18 KKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 18 ~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~ 51 (726)
..++|+|+|+||+|..++..|+..|. +++++|.
T Consensus 116 ~~k~vliiGaGg~g~aia~~L~~~g~-~v~v~~R 148 (270)
T TIGR00507 116 PNQRVLIIGAGGAARAVALPLLKADC-NVIIANR 148 (270)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 46789999999999999999999996 8888863
No 182
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=83.98 E-value=1.2 Score=48.34 Aligned_cols=31 Identities=32% Similarity=0.668 Sum_probs=27.8
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~ 51 (726)
.+|+|||+|.+|+.++..|+..|. +++++|.
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~-~V~~~~r 33 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGA-DVTLIGR 33 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCC-cEEEEec
Confidence 579999999999999999999995 5888875
No 183
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=83.97 E-value=1.9 Score=39.13 Aligned_cols=32 Identities=31% Similarity=0.582 Sum_probs=27.0
Q ss_pred EEEEcCchHHHHHHHHHHHhCCCeEEEEeCCcc
Q psy9783 22 VLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTI 54 (726)
Q Consensus 22 VlvVGaGgiGceiaknLal~Gv~~i~iiD~D~I 54 (726)
|+|+|+|.+|-++++.|...| -.++++|.|.-
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~-~~vvvid~d~~ 32 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGG-IDVVVIDRDPE 32 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTT-SEEEEEESSHH
T ss_pred eEEEcCCHHHHHHHHHHHhCC-CEEEEEECCcH
Confidence 689999999999999999944 68999998853
No 184
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=83.95 E-value=1.3 Score=50.39 Aligned_cols=35 Identities=23% Similarity=0.366 Sum_probs=31.2
Q ss_pred HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
+...+|+|+|+|.||..+++.+..+|. +++++|.|
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d 234 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVD 234 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence 467899999999999999999999999 68888865
No 185
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=83.94 E-value=5.7 Score=43.92 Aligned_cols=33 Identities=27% Similarity=0.401 Sum_probs=28.3
Q ss_pred hcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 18 KKSKVLVVGA-GGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 18 ~~~kVlvVGa-GgiGceiaknLal~Gv~~i~iiD~ 51 (726)
.+++|+|.|+ |-||.++++.|...|. +++.+|.
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~-~V~~v~r 53 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGH-YIIASDW 53 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCC-EEEEEEe
Confidence 4578999996 9999999999999984 6888874
No 186
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=83.83 E-value=8 Score=41.63 Aligned_cols=31 Identities=23% Similarity=0.419 Sum_probs=27.1
Q ss_pred cEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 21 kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
+|.+||+|.+|..++++|+..|+ .+++.|.+
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~-~v~v~dr~ 32 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGH-EVVGYDVN 32 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCC-EEEEEECC
Confidence 69999999999999999999996 57777754
No 187
>PRK06841 short chain dehydrogenase; Provisional
Probab=83.67 E-value=1.5 Score=44.83 Aligned_cols=34 Identities=21% Similarity=0.437 Sum_probs=29.1
Q ss_pred HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 17 IKKSKVLVVGA-GGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 17 L~~~kVlvVGa-GgiGceiaknLal~Gv~~i~iiD~ 51 (726)
+.+++|+|.|+ |+||.++++.|+..|. ++.+++.
T Consensus 13 ~~~k~vlItGas~~IG~~la~~l~~~G~-~Vi~~~r 47 (255)
T PRK06841 13 LSGKVAVVTGGASGIGHAIAELFAAKGA-RVALLDR 47 (255)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 56789999995 9999999999999996 5777764
No 188
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=83.64 E-value=1.3 Score=46.92 Aligned_cols=31 Identities=26% Similarity=0.441 Sum_probs=26.7
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~ 51 (726)
.||+|+|+|++|+.++..|+..|. ++++++.
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~-~V~~~~r 31 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGR-DVTFLVR 31 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCC-ceEEEec
Confidence 379999999999999999999984 5777763
No 189
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=83.58 E-value=1.4 Score=44.75 Aligned_cols=34 Identities=26% Similarity=0.338 Sum_probs=28.9
Q ss_pred HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 17 IKKSKVLVVGA-GGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 17 L~~~kVlvVGa-GgiGceiaknLal~Gv~~i~iiD~ 51 (726)
|++++|+|.|+ ||||.++++.|+..|. ++.+++.
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~vi~~~r 37 (248)
T TIGR01832 3 LEGKVALVTGANTGLGQGIAVGLAEAGA-DIVGAGR 37 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcC
Confidence 56789999996 8999999999999997 5777663
No 190
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=83.58 E-value=1.3 Score=46.71 Aligned_cols=33 Identities=27% Similarity=0.428 Sum_probs=27.4
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783 20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDT 53 (726)
Q Consensus 20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~ 53 (726)
.+|+|||+|-.|+.+|..|++.|+. ++|+|...
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~-v~i~E~~~ 34 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGID-VTIIERRP 34 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCE-EEEEESSS
T ss_pred ceEEEECCCHHHHHHHHHHHhcccc-cccchhcc
Confidence 4699999999999999999999977 88888654
No 191
>PRK06057 short chain dehydrogenase; Provisional
Probab=83.52 E-value=1.4 Score=45.23 Aligned_cols=36 Identities=22% Similarity=0.436 Sum_probs=30.2
Q ss_pred HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 16 LIKKSKVLVVGA-GGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 16 kL~~~kVlvVGa-GgiGceiaknLal~Gv~~i~iiD~D 52 (726)
+|.+++|+|+|+ |+||.++++.|+..|. ++.++|.+
T Consensus 4 ~~~~~~vlItGasggIG~~~a~~l~~~G~-~v~~~~r~ 40 (255)
T PRK06057 4 RLAGRVAVITGGGSGIGLATARRLAAEGA-TVVVGDID 40 (255)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCC
Confidence 367789999996 9999999999999995 57777643
No 192
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.38 E-value=1.3 Score=50.95 Aligned_cols=40 Identities=25% Similarity=0.252 Sum_probs=34.5
Q ss_pred HHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 12 DLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 12 ~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
+....+..++|+|+|+|+.|..+++.|...|. .+++.|.+
T Consensus 8 ~~~~~~~~~~v~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~ 47 (473)
T PRK00141 8 SALPQELSGRVLVAGAGVSGRGIAAMLSELGC-DVVVADDN 47 (473)
T ss_pred hhcccccCCeEEEEccCHHHHHHHHHHHHCCC-EEEEECCC
Confidence 44556778899999999999999999999998 89998853
No 193
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=83.33 E-value=1.5 Score=46.77 Aligned_cols=32 Identities=34% Similarity=0.544 Sum_probs=28.4
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
++|.|||+|-+|+.++..|+..|. +++++|.+
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~-~V~~~d~~ 36 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGM-DVWLLDSD 36 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCC
Confidence 579999999999999999999995 68888854
No 194
>KOG2015|consensus
Probab=83.22 E-value=0.46 Score=52.06 Aligned_cols=23 Identities=52% Similarity=0.869 Sum_probs=21.2
Q ss_pred hhhhhhchhhhhhccccCcchhh
Q psy9783 139 IRFLHLNRQFLFHKQHVGKSKAQ 161 (726)
Q Consensus 139 ~~~~~l~~q~l~~~~hvg~sk~~ 161 (726)
|+..+|||||||++.++|++|++
T Consensus 75 Id~sNLNRQFLF~~~DiG~pKAq 97 (422)
T KOG2015|consen 75 IDLSNLNRQFLFRESDIGEPKAQ 97 (422)
T ss_pred eecccchhhhcccccccCchhHH
Confidence 66789999999999999999994
No 195
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=83.18 E-value=1.6 Score=44.07 Aligned_cols=35 Identities=23% Similarity=0.586 Sum_probs=29.9
Q ss_pred HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 17 IKKSKVLVVGA-GGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 17 L~~~kVlvVGa-GgiGceiaknLal~Gv~~i~iiD~D 52 (726)
|.+++++|+|+ |+||..+++.|+..|. ++.++|.+
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~-~vi~~~r~ 38 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGA-KLALIDLN 38 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 56789999996 9999999999999996 58887743
No 196
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=83.09 E-value=1.4 Score=47.79 Aligned_cols=31 Identities=29% Similarity=0.696 Sum_probs=27.5
Q ss_pred EEEEcCchHHHHHHHHHHHhCC-CeEEEEeCC
Q psy9783 22 VLVVGAGGIGCELLKNLVLSGF-SNIEIVDLD 52 (726)
Q Consensus 22 VlvVGaGgiGceiaknLal~Gv-~~i~iiD~D 52 (726)
|.|||+|++|+.++-.|+..|+ .+|+++|.+
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~ 32 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVN 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 5799999999999999999998 579999953
No 197
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=83.05 E-value=1.6 Score=48.35 Aligned_cols=36 Identities=33% Similarity=0.362 Sum_probs=30.8
Q ss_pred HHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEe
Q psy9783 14 EDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVD 50 (726)
Q Consensus 14 q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD 50 (726)
...|++++|.|||+|.+|..++++|..+|+ ++.+.+
T Consensus 12 ~~~L~gktIgIIG~GsmG~AlA~~L~~sG~-~Vvv~~ 47 (330)
T PRK05479 12 LSLIKGKKVAIIGYGSQGHAHALNLRDSGV-DVVVGL 47 (330)
T ss_pred hhhhCCCEEEEEeeHHHHHHHHHHHHHCCC-EEEEEE
Confidence 457889999999999999999999999998 455544
No 198
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=82.97 E-value=7 Score=41.71 Aligned_cols=29 Identities=34% Similarity=0.649 Sum_probs=25.1
Q ss_pred cEEEEcC-chHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 21 KVLVVGA-GGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 21 kVlvVGa-GgiGceiaknLal~Gv~~i~iiD~ 51 (726)
||||.|+ |-||+++++.|...| +++.+|.
T Consensus 2 ~iLVtG~~GfiGs~l~~~L~~~g--~V~~~~~ 31 (299)
T PRK09987 2 NILLFGKTGQVGWELQRALAPLG--NLIALDV 31 (299)
T ss_pred eEEEECCCCHHHHHHHHHhhccC--CEEEecc
Confidence 7999995 999999999999888 5777774
No 199
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=82.95 E-value=1.6 Score=47.29 Aligned_cols=31 Identities=19% Similarity=0.374 Sum_probs=27.0
Q ss_pred cEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 21 kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
+|.|+|+|++|+.++..|+..| .++++++.+
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g-~~V~l~~r~ 32 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKK-ISVNLWGRN 32 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCC-CeEEEEecC
Confidence 6999999999999999999999 457787654
No 200
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=82.89 E-value=1.7 Score=52.69 Aligned_cols=91 Identities=12% Similarity=0.079 Sum_probs=56.2
Q ss_pred ccccccEEEEcc-CcHHHHHHHHHHhhhcCC--cEEEEccCCccc-eEEEEeCCCCcceecCCCCCCCCCCCccccCCCC
Q psy9783 192 YFKQFTLVMNAL-DNRAARNHVNRMCLASEV--PLIESGTAGYEG-QVELIKKGETKCYECDPKPAAKTYPGCTIRNTPS 267 (726)
Q Consensus 192 ~~~~~DlVi~al-Dn~~aR~~in~~c~~~~i--PlI~sg~~G~~G-~v~~i~p~~t~cy~C~~~~~~~~~p~Cti~~~p~ 267 (726)
-++++|+||.|+ .+.+..+.+-...-.+-. .+|.+.|.++.- .+.-.......+...++-.+....|.+-|-..|.
T Consensus 386 ~~~~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~Hff~P~~~~~lVEvv~g~~ 465 (708)
T PRK11154 386 GFKHADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVIPHAK 465 (708)
T ss_pred HhccCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccceEEEecCCccccCceEEEECCCC
Confidence 368999999984 566666665555444433 366666665321 1111112223466666665666678888888888
Q ss_pred CcchhhhhHhHHhHH
Q psy9783 268 EPIHCIVWAKHLFNY 282 (726)
Q Consensus 268 ~~~h~i~~a~~lf~~ 282 (726)
+....+.++..+...
T Consensus 466 Ts~~~~~~~~~~~~~ 480 (708)
T PRK11154 466 TSAETIATTVALAKK 480 (708)
T ss_pred CCHHHHHHHHHHHHH
Confidence 888888888776654
No 201
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=82.86 E-value=1.7 Score=44.58 Aligned_cols=35 Identities=29% Similarity=0.496 Sum_probs=29.8
Q ss_pred HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 17 IKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 17 L~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
+.+++|+|.| .|+||.++++.|+..|. ++.++|.+
T Consensus 8 ~~~k~vlItGa~g~iG~~ia~~l~~~G~-~V~~~~r~ 43 (255)
T PRK07523 8 LTGRRALVTGSSQGIGYALAEGLAQAGA-EVILNGRD 43 (255)
T ss_pred CCCCEEEEECCcchHHHHHHHHHHHcCC-EEEEEeCC
Confidence 5678999998 59999999999999997 57777653
No 202
>PLN02602 lactate dehydrogenase
Probab=82.76 E-value=1.6 Score=48.66 Aligned_cols=32 Identities=28% Similarity=0.646 Sum_probs=29.5
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCC-eEEEEeC
Q psy9783 20 SKVLVVGAGGIGCELLKNLVLSGFS-NIEIVDL 51 (726)
Q Consensus 20 ~kVlvVGaGgiGceiaknLal~Gv~-~i~iiD~ 51 (726)
.||.|||+|.+|+.+|-.|+..|+. +|.|+|-
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi 70 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDV 70 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeC
Confidence 6999999999999999999999984 7999985
No 203
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=82.58 E-value=9.2 Score=43.94 Aligned_cols=57 Identities=19% Similarity=0.255 Sum_probs=40.8
Q ss_pred hCCCCeEEEEecccccccccccccccccEEEEc--cCcHHHHHHHHHHhhhcCCcEEEEccCCccceE
Q psy9783 170 FNPDANIVAHHTSIISADFGVNYFKQFTLVMNA--LDNRAARNHVNRMCLASEVPLIESGTAGYEGQV 235 (726)
Q Consensus 170 ~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~a--lDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v 235 (726)
..++++|++..++ .+-++++|+|+++ ++..++|..--+.+.+||+ +-..|.|.+|..
T Consensus 56 ~g~~~~v~~Ttdr-------~eAl~gADfVi~~irvGg~~~r~~De~Ip~kyGi--~gqET~G~GG~~ 114 (437)
T cd05298 56 NYPEIKFVYTTDP-------EEAFTDADFVFAQIRVGGYAMREQDEKIPLKHGV--VGQETCGPGGFA 114 (437)
T ss_pred hCCCeEEEEECCH-------HHHhCCCCEEEEEeeeCCchHHHHHHhHHHHcCc--ceecCccHHHHH
Confidence 3345556555443 2447889999987 5678899999999999996 544677777743
No 204
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=82.57 E-value=1.6 Score=46.68 Aligned_cols=32 Identities=31% Similarity=0.466 Sum_probs=27.9
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
.+|.|||+|.+|+.++..|+..|. +++++|.+
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~-~V~~~~r~ 33 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGH-DVTLWARD 33 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-EEEEEECC
Confidence 379999999999999999999986 47888754
No 205
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=82.37 E-value=1.7 Score=47.19 Aligned_cols=32 Identities=25% Similarity=0.456 Sum_probs=29.7
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~ 51 (726)
.||.|||+|-+|+.+|-.|+..|.+++.++|-
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi 33 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDV 33 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeC
Confidence 58999999999999999999999878999995
No 206
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=82.35 E-value=1.6 Score=42.61 Aligned_cols=32 Identities=25% Similarity=0.588 Sum_probs=25.8
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
.+|.+||+|..|+.++++|+..|+. +++.|.+
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~-v~~~d~~ 33 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYE-VTVYDRS 33 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTE-EEEEESS
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCe-EEeeccc
Confidence 4799999999999999999999964 7787743
No 207
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=82.25 E-value=1.6 Score=50.37 Aligned_cols=33 Identities=27% Similarity=0.503 Sum_probs=29.8
Q ss_pred HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEe
Q psy9783 17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVD 50 (726)
Q Consensus 17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD 50 (726)
+.+++++|+|+||+|..+++.|+..|+ +++++|
T Consensus 330 ~~~k~vlIiGaGgiG~aia~~L~~~G~-~V~i~~ 362 (477)
T PRK09310 330 LNNQHVAIVGAGGAAKAIATTLARAGA-ELLIFN 362 (477)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEe
Confidence 467899999999999999999999998 788876
No 208
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=82.23 E-value=1.8 Score=43.24 Aligned_cols=35 Identities=23% Similarity=0.347 Sum_probs=30.1
Q ss_pred HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 16 LIKKSKVLVVGA-GGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 16 kL~~~kVlvVGa-GgiGceiaknLal~Gv~~i~iiD~ 51 (726)
.+++++++|+|+ |++|..+++.|+..| .++++++.
T Consensus 25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g-~~V~l~~R 60 (194)
T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREG-ARVVLVGR 60 (194)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEcC
Confidence 356789999996 999999999999988 48888764
No 209
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=82.22 E-value=9.5 Score=39.80 Aligned_cols=31 Identities=23% Similarity=0.484 Sum_probs=25.3
Q ss_pred cEEEEcC-chHHHHHHHHHHHhCC-CeEEEEeC
Q psy9783 21 KVLVVGA-GGIGCELLKNLVLSGF-SNIEIVDL 51 (726)
Q Consensus 21 kVlvVGa-GgiGceiaknLal~Gv-~~i~iiD~ 51 (726)
+|+|.|+ |.||.++++.|+..|- .+++++|.
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~ 33 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDK 33 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecC
Confidence 5899985 9999999999999884 46777653
No 210
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=82.05 E-value=3.3 Score=44.58 Aligned_cols=63 Identities=17% Similarity=0.334 Sum_probs=36.5
Q ss_pred hhCCCCeEEEEecccccccccccccc-cccEEEEc---cCcHHHHHHHHHHhhhcCCcE-EEEc-cCCcc
Q psy9783 169 NFNPDANIVAHHTSIISADFGVNYFK-QFTLVMNA---LDNRAARNHVNRMCLASEVPL-IESG-TAGYE 232 (726)
Q Consensus 169 ~~np~~~i~~~~~~i~~~~~~~~~~~-~~DlVi~a---lDn~~aR~~in~~c~~~~iPl-I~sg-~~G~~ 232 (726)
...||+-+++-+..... ++...+++ +.|+++.. +-+..-+..+-+.|.+.+.-+ |-+| ..|+.
T Consensus 60 ~~~~DlVVE~A~~~av~-e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~i~ipSGAigGlD 128 (267)
T PRK13301 60 AWRPDLVVEAAGQQAIA-EHAEGCLTAGLDMIICSAGALADDALRARLIAAAEAGGARIRVPAGAIAGLD 128 (267)
T ss_pred hcCCCEEEECCCHHHHH-HHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhCCCEEEEeChHHHhHH
Confidence 34455555443333221 34455665 78998865 445567888888898877554 4444 33443
No 211
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=82.05 E-value=1.8 Score=47.32 Aligned_cols=34 Identities=29% Similarity=0.454 Sum_probs=30.6
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCcc
Q psy9783 20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTI 54 (726)
Q Consensus 20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~I 54 (726)
..|+|||+|..|+.+|..|++.|+ +++|+|.+..
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~~G~-~v~v~E~~~~ 39 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQSGL-RVALLAPRAP 39 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHhCCC-eEEEEecCCC
Confidence 479999999999999999999997 6999997654
No 212
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=81.84 E-value=9.9 Score=43.41 Aligned_cols=34 Identities=29% Similarity=0.509 Sum_probs=28.3
Q ss_pred hcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 18 KKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 18 ~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
+..||+|.| .|-||+++++.|...|. +++++|.+
T Consensus 119 ~~mkILVTGatGFIGs~Lv~~Ll~~G~-~V~~ldr~ 153 (436)
T PLN02166 119 KRLRIVVTGGAGFVGSHLVDKLIGRGD-EVIVIDNF 153 (436)
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 346899998 69999999999999985 67778754
No 213
>PRK06194 hypothetical protein; Provisional
Probab=81.67 E-value=1.9 Score=45.02 Aligned_cols=35 Identities=17% Similarity=0.366 Sum_probs=29.0
Q ss_pred HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 17 IKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 17 L~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
+.+++|||.| +||||.++++.|+..|. +++++|.+
T Consensus 4 ~~~k~vlVtGasggIG~~la~~l~~~G~-~V~~~~r~ 39 (287)
T PRK06194 4 FAGKVAVITGAASGFGLAFARIGAALGM-KLVLADVQ 39 (287)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 4567899998 68999999999999996 58887753
No 214
>PRK06487 glycerate dehydrogenase; Provisional
Probab=81.63 E-value=1.6 Score=47.77 Aligned_cols=35 Identities=17% Similarity=0.267 Sum_probs=29.5
Q ss_pred HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~ 51 (726)
.|.+++|.|||+|.||.++++.|...|. ++..+|.
T Consensus 145 ~l~gktvgIiG~G~IG~~vA~~l~~fgm-~V~~~~~ 179 (317)
T PRK06487 145 ELEGKTLGLLGHGELGGAVARLAEAFGM-RVLIGQL 179 (317)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECC
Confidence 5899999999999999999999987776 4666553
No 215
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=81.58 E-value=1.7 Score=51.82 Aligned_cols=33 Identities=21% Similarity=0.453 Sum_probs=30.3
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783 20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDT 53 (726)
Q Consensus 20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~ 53 (726)
..|+|||+|-+||.+|-.|++.|. +++|+|.+.
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G~-~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRGW-QVTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCCC-eEEEEecCC
Confidence 589999999999999999999997 599999874
No 216
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=81.54 E-value=2 Score=46.68 Aligned_cols=34 Identities=18% Similarity=0.394 Sum_probs=30.5
Q ss_pred cEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccC
Q psy9783 21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTID 55 (726)
Q Consensus 21 kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie 55 (726)
.|+|||+|-+|+.+|-.|++.|. +++|+|.+.+-
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~~G~-~V~vle~~~~~ 35 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAARRGL-SVTVIERSSRA 35 (365)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCCCC
Confidence 58999999999999999999996 59999988763
No 217
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=81.42 E-value=1.9 Score=44.22 Aligned_cols=35 Identities=26% Similarity=0.495 Sum_probs=29.2
Q ss_pred HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 17 IKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 17 L~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
+.+++++|.| .|+||.++++.|+..|. ++.++|.+
T Consensus 4 l~~~~vlItGas~~iG~~ia~~l~~~G~-~v~~~~r~ 39 (257)
T PRK07067 4 LQGKVALLTGAASGIGEAVAERYLAEGA-RVVIADIK 39 (257)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEcCC
Confidence 5577899998 59999999999999996 57777644
No 218
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=81.38 E-value=2.9 Score=47.63 Aligned_cols=58 Identities=16% Similarity=0.090 Sum_probs=38.2
Q ss_pred hhCCCCeEEEEecccccccccccccccccEEEEc--cCcHHHHHHHHHHhhhcCCcEEEEccCCccceE
Q psy9783 169 NFNPDANIVAHHTSIISADFGVNYFKQFTLVMNA--LDNRAARNHVNRMCLASEVPLIESGTAGYEGQV 235 (726)
Q Consensus 169 ~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~a--lDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v 235 (726)
...++++|++..+. .+-+.++|+||++ +...++|..-.+....+|+-- ..|.|.+|..
T Consensus 56 ~~~~~~~v~~t~d~-------~~al~gadfVi~~~~vg~~~~r~~de~i~~~~Gi~g--qET~G~GG~~ 115 (419)
T cd05296 56 KAGLPIKVHLTTDR-------REALEGADFVFTQIRVGGLEARALDERIPLKHGVIG--QETTGAGGFA 115 (419)
T ss_pred hhCCCeEEEEeCCH-------HHHhCCCCEEEEEEeeCCcchhhhhhhhHHHcCCcc--ccCCCcchHH
Confidence 33445555544332 2447788999987 455678888888888888753 5677777743
No 219
>PLN00106 malate dehydrogenase
Probab=81.33 E-value=2.1 Score=47.14 Aligned_cols=36 Identities=33% Similarity=0.498 Sum_probs=31.4
Q ss_pred hcCcEEEEcC-chHHHHHHHHHHHhCC-CeEEEEeCCc
Q psy9783 18 KKSKVLVVGA-GGIGCELLKNLVLSGF-SNIEIVDLDT 53 (726)
Q Consensus 18 ~~~kVlvVGa-GgiGceiaknLal~Gv-~~i~iiD~D~ 53 (726)
...||+|+|+ |.+|+.++-.|+..|. ++|.++|-+.
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~ 54 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN 54 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 3468999999 9999999999999888 4799999755
No 220
>PLN02494 adenosylhomocysteinase
Probab=81.20 E-value=1.9 Score=49.83 Aligned_cols=37 Identities=19% Similarity=0.390 Sum_probs=32.6
Q ss_pred HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCcc
Q psy9783 17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTI 54 (726)
Q Consensus 17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~I 54 (726)
|.+++|+|+|+|.||..+++.+...|. ++.++|.|..
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp~ 288 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDPI 288 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCch
Confidence 567899999999999999999999998 6888887643
No 221
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=81.12 E-value=7.2 Score=47.27 Aligned_cols=92 Identities=11% Similarity=0.070 Sum_probs=56.1
Q ss_pred ccccccEEEEcc-CcHHHHHHHHHHhhhcCC--cEEEEccCCccce-EEEEeCCCCcceecCCCCCCCCCCCccccCCCC
Q psy9783 192 YFKQFTLVMNAL-DNRAARNHVNRMCLASEV--PLIESGTAGYEGQ-VELIKKGETKCYECDPKPAAKTYPGCTIRNTPS 267 (726)
Q Consensus 192 ~~~~~DlVi~al-Dn~~aR~~in~~c~~~~i--PlI~sg~~G~~G~-v~~i~p~~t~cy~C~~~~~~~~~p~Cti~~~p~ 267 (726)
-++++|+||.|+ .+.+....+-.....+-. .+|.+-|.++.=. +.-.......+...++-.++...|.+-|-..+.
T Consensus 381 ~~~~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~~g~HffnP~~~~~lVEvv~g~~ 460 (699)
T TIGR02440 381 GFKDVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENVIGLHYFSPVEKMPLVEVIPHAG 460 (699)
T ss_pred HhccCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCC
Confidence 368999999984 566655554444433322 3566666654211 111112223466666665666678888888888
Q ss_pred CcchhhhhHhHHhHHH
Q psy9783 268 EPIHCIVWAKHLFNYL 283 (726)
Q Consensus 268 ~~~h~i~~a~~lf~~l 283 (726)
+...++.++..++..+
T Consensus 461 T~~~~~~~~~~~~~~~ 476 (699)
T TIGR02440 461 TSEQTIATTVALAKKQ 476 (699)
T ss_pred CCHHHHHHHHHHHHHc
Confidence 8888999988776653
No 222
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=81.10 E-value=1.9 Score=50.43 Aligned_cols=36 Identities=22% Similarity=0.559 Sum_probs=31.6
Q ss_pred cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccC
Q psy9783 19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTID 55 (726)
Q Consensus 19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie 55 (726)
...|+|||+|.+|+.+|..|++.|. +++|+|...+-
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~rG~-~V~LlEk~d~~ 41 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCALRGL-RCILVERHDIA 41 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHHcCC-eEEEEECCCCC
Confidence 3579999999999999999999997 69999986553
No 223
>PRK06185 hypothetical protein; Provisional
Probab=81.09 E-value=2 Score=47.45 Aligned_cols=35 Identities=20% Similarity=0.375 Sum_probs=30.8
Q ss_pred hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783 18 KKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDT 53 (726)
Q Consensus 18 ~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~ 53 (726)
.+..|+|||+|..|+.+|..|++.|+ +++|+|...
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~G~-~v~liE~~~ 39 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARAGV-DVTVLEKHA 39 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Confidence 45689999999999999999999997 589999763
No 224
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=81.08 E-value=2 Score=45.71 Aligned_cols=31 Identities=32% Similarity=0.288 Sum_probs=27.6
Q ss_pred cEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 21 kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
+|.|||+|.+|..+++.|...|. ++.++|.+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~ 32 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRR 32 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEECC
Confidence 69999999999999999999986 68888863
No 225
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=81.07 E-value=1.8 Score=48.72 Aligned_cols=35 Identities=29% Similarity=0.392 Sum_probs=30.6
Q ss_pred HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~ 51 (726)
.|.+++|.|||+|.||..+++.|...|+. +...|.
T Consensus 113 ~l~gktvGIIG~G~IG~~va~~l~a~G~~-V~~~Dp 147 (381)
T PRK00257 113 DLAERTYGVVGAGHVGGRLVRVLRGLGWK-VLVCDP 147 (381)
T ss_pred CcCcCEEEEECCCHHHHHHHHHHHHCCCE-EEEECC
Confidence 57889999999999999999999999974 666674
No 226
>PRK06436 glycerate dehydrogenase; Provisional
Probab=81.04 E-value=1.8 Score=47.21 Aligned_cols=37 Identities=24% Similarity=0.301 Sum_probs=31.2
Q ss_pred HHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 15 DLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 15 ~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
..|.+++|.|||.|.||.++++.|...|+ ++..+|..
T Consensus 118 ~~L~gktvgIiG~G~IG~~vA~~l~afG~-~V~~~~r~ 154 (303)
T PRK06436 118 KLLYNKSLGILGYGGIGRRVALLAKAFGM-NIYAYTRS 154 (303)
T ss_pred CCCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCC
Confidence 46889999999999999999998877776 57777753
No 227
>PRK12828 short chain dehydrogenase; Provisional
Probab=80.96 E-value=1.7 Score=43.41 Aligned_cols=35 Identities=20% Similarity=0.372 Sum_probs=29.9
Q ss_pred HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 17 IKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 17 L~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
+.+++|+|.| .|+||..+++.|+..|.. +.++|.+
T Consensus 5 ~~~k~vlItGatg~iG~~la~~l~~~G~~-v~~~~r~ 40 (239)
T PRK12828 5 LQGKVVAITGGFGGLGRATAAWLAARGAR-VALIGRG 40 (239)
T ss_pred CCCCEEEEECCCCcHhHHHHHHHHHCCCe-EEEEeCC
Confidence 5678999998 599999999999999975 8888764
No 228
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=80.93 E-value=2 Score=49.71 Aligned_cols=38 Identities=26% Similarity=0.420 Sum_probs=33.3
Q ss_pred HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCcc
Q psy9783 16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTI 54 (726)
Q Consensus 16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~I 54 (726)
.|..++|+|||+|.||..+++.|...|. +++++|.|..
T Consensus 251 ~LaGKtVgVIG~G~IGr~vA~rL~a~Ga-~ViV~e~dp~ 288 (476)
T PTZ00075 251 MIAGKTVVVCGYGDVGKGCAQALRGFGA-RVVVTEIDPI 288 (476)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCch
Confidence 4788999999999999999999999998 6888876643
No 229
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=80.92 E-value=2.1 Score=43.69 Aligned_cols=37 Identities=30% Similarity=0.457 Sum_probs=31.3
Q ss_pred HHHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 15 DLIKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 15 ~kL~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
+.+.+++|+|.| .|+||..+++.|+..|. ++.++|.+
T Consensus 8 ~~~~~k~vlItG~~g~iG~~la~~l~~~G~-~Vi~~~r~ 45 (247)
T PRK08945 8 DLLKDRIILVTGAGDGIGREAALTYARHGA-TVILLGRT 45 (247)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCC-cEEEEeCC
Confidence 456788899997 78899999999999987 77888764
No 230
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=80.85 E-value=1.9 Score=47.22 Aligned_cols=33 Identities=42% Similarity=0.619 Sum_probs=29.4
Q ss_pred cEEEEcC-chHHHHHHHHHHHhCC-CeEEEEeCCc
Q psy9783 21 KVLVVGA-GGIGCELLKNLVLSGF-SNIEIVDLDT 53 (726)
Q Consensus 21 kVlvVGa-GgiGceiaknLal~Gv-~~i~iiD~D~ 53 (726)
||.|||+ |.+|+.++-.|+..|+ .+|.|+|-+.
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~ 35 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG 35 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence 6999999 9999999999999998 5799998653
No 231
>PRK07774 short chain dehydrogenase; Provisional
Probab=80.73 E-value=2.3 Score=43.17 Aligned_cols=35 Identities=29% Similarity=0.555 Sum_probs=29.1
Q ss_pred HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 17 IKKSKVLVVGA-GGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 17 L~~~kVlvVGa-GgiGceiaknLal~Gv~~i~iiD~D 52 (726)
+.+++++|.|+ |+||.++++.|+..|. ++.++|.+
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~-~vi~~~r~ 39 (250)
T PRK07774 4 FDDKVAIVTGAAGGIGQAYAEALAREGA-SVVVADIN 39 (250)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 56688999996 9999999999999995 57777643
No 232
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=80.73 E-value=2.2 Score=44.10 Aligned_cols=33 Identities=27% Similarity=0.470 Sum_probs=29.5
Q ss_pred cEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCcc
Q psy9783 21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTI 54 (726)
Q Consensus 21 kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~I 54 (726)
.|+|||+|..|+.+|..|++.|+ +++|+|.+..
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~-~v~vie~~~~ 34 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGL-RVLLLEKKSF 34 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCC
Confidence 58999999999999999999998 5899997753
No 233
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=80.70 E-value=9.8 Score=42.59 Aligned_cols=34 Identities=44% Similarity=0.630 Sum_probs=27.3
Q ss_pred hcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 18 KKSKVLVVGA-GGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 18 ~~~kVlvVGa-GgiGceiaknLal~Gv~~i~iiD~D 52 (726)
...+|+|+|+ |.||..+++.|+..|. ++.+++.+
T Consensus 59 ~~~kVLVtGatG~IG~~l~~~Ll~~G~-~V~~l~R~ 93 (390)
T PLN02657 59 KDVTVLVVGATGYIGKFVVRELVRRGY-NVVAVARE 93 (390)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEEec
Confidence 3468999985 9999999999999995 57666643
No 234
>PRK07060 short chain dehydrogenase; Provisional
Probab=80.68 E-value=2.3 Score=42.99 Aligned_cols=34 Identities=29% Similarity=0.350 Sum_probs=29.5
Q ss_pred HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 17 IKKSKVLVVGA-GGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 17 L~~~kVlvVGa-GgiGceiaknLal~Gv~~i~iiD~ 51 (726)
+.+++++|.|+ |+||..+++.|+..|. ++.+++.
T Consensus 7 ~~~~~~lItGa~g~iG~~~a~~l~~~g~-~V~~~~r 41 (245)
T PRK07060 7 FSGKSVLVTGASSGIGRACAVALAQRGA-RVVAAAR 41 (245)
T ss_pred cCCCEEEEeCCcchHHHHHHHHHHHCCC-EEEEEeC
Confidence 56789999997 8999999999999997 5888774
No 235
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=80.65 E-value=2 Score=48.87 Aligned_cols=36 Identities=22% Similarity=0.272 Sum_probs=32.1
Q ss_pred HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783 17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDT 53 (726)
Q Consensus 17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~ 53 (726)
+..++|+|+|+|.+|.-+++.+..+|. ++.++|.|.
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp 228 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDP 228 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCCh
Confidence 578899999999999999999999998 588888664
No 236
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=80.65 E-value=1.9 Score=48.51 Aligned_cols=35 Identities=26% Similarity=0.377 Sum_probs=30.4
Q ss_pred HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~ 51 (726)
.|.+++|.|||+|.||..+++.|...|+. +...|.
T Consensus 113 ~L~gktvGIIG~G~IG~~vA~~l~a~G~~-V~~~dp 147 (378)
T PRK15438 113 SLHDRTVGIVGVGNVGRRLQARLEALGIK-TLLCDP 147 (378)
T ss_pred CcCCCEEEEECcCHHHHHHHHHHHHCCCE-EEEECC
Confidence 47899999999999999999999988874 666664
No 237
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=80.63 E-value=1.8 Score=48.26 Aligned_cols=58 Identities=22% Similarity=0.347 Sum_probs=36.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhhhcccchhhh--ccCCCCCCccccccccCCCCCCCCCCCCCC
Q psy9783 507 PAIATSNAIVAGLVVLHAIHVLQARFSSCQTVYL--RKKPNHRDQMIVPEKYLTAPNPTCPVCSPK 570 (726)
Q Consensus 507 PAIATTnAIVAGLvvlEl~KlL~~k~e~~rn~fl--nl~pn~~~~~~vP~~~~~ePnp~C~vC~~~ 570 (726)
+-+.+|+++|++++++|++|+|.|.-+...+.++ ++..+. .-.+. -.++|.|.+|+..
T Consensus 300 gv~g~~~~~~~~~~a~e~~k~l~g~~~~~~~~~~~~d~~~~~-----~~~~~-~~~~~~C~~C~~~ 359 (376)
T PRK08762 300 GVLGVLPGVIGLLQATEAIKLLLGIGDPLTGRLLTFDALAMR-----FRELR-LPPDPHCPVCAPG 359 (376)
T ss_pred CcchhhHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEECCCCe-----EEEEe-ccCCCCCCCCCCC
Confidence 3567799999999999999999984322222222 322111 11112 2468999999763
No 238
>PRK07574 formate dehydrogenase; Provisional
Probab=80.47 E-value=1.9 Score=48.67 Aligned_cols=35 Identities=29% Similarity=0.371 Sum_probs=30.4
Q ss_pred HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~ 51 (726)
.|..++|.|||+|.||.++++.|...|+ ++..+|.
T Consensus 189 ~L~gktVGIvG~G~IG~~vA~~l~~fG~-~V~~~dr 223 (385)
T PRK07574 189 DLEGMTVGIVGAGRIGLAVLRRLKPFDV-KLHYTDR 223 (385)
T ss_pred ecCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECC
Confidence 5889999999999999999999998887 4667663
No 239
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=80.46 E-value=2.7 Score=47.56 Aligned_cols=42 Identities=29% Similarity=0.256 Sum_probs=29.3
Q ss_pred hcCcEEEEcCchHHHHHHHHHHHhCCC--eEEEEeCCccCccCCC
Q psy9783 18 KKSKVLVVGAGGIGCELLKNLVLSGFS--NIEIVDLDTIDVSNLN 60 (726)
Q Consensus 18 ~~~kVlvVGaGgiGceiaknLal~Gv~--~i~iiD~D~Ie~sNLn 60 (726)
+..||.|+|+|.||-.+++.|...++. +|..| +|.-+...+.
T Consensus 59 ~~~kVaInGfGrIGR~vlr~l~~~~~~~~evvaI-Nd~~~~~~~a 102 (395)
T PLN03096 59 AKIKVAINGFGRIGRNFLRCWHGRKDSPLDVVAI-NDTGGVKQAS 102 (395)
T ss_pred cccEEEEECcCHHHHHHHHHHHhCCCCCeEEEEE-cCCCCHHHHH
Confidence 346999999999999999999876544 44444 2444444443
No 240
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=80.42 E-value=1.2 Score=49.65 Aligned_cols=46 Identities=28% Similarity=0.380 Sum_probs=37.3
Q ss_pred CcEEEEcCchHHH-HHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCC
Q psy9783 20 SKVLVVGAGGIGC-ELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFH 66 (726)
Q Consensus 20 ~kVlvVGaGgiGc-eiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~ 66 (726)
.||+++|+|++|+ .+...|..+| -.|+++|.+.--..-|++|-+|+
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g-~~V~~vd~~~~~v~aL~~qglY~ 47 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNG-FEVTFVDVNQELIDALNKRKSYQ 47 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCC-CeEEEEECCHHHHHHHhcCCCeE
Confidence 4799999999998 6688899999 45999997554567788887774
No 241
>PRK09126 hypothetical protein; Provisional
Probab=80.32 E-value=2 Score=47.15 Aligned_cols=36 Identities=28% Similarity=0.559 Sum_probs=31.1
Q ss_pred hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCcc
Q psy9783 18 KKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTI 54 (726)
Q Consensus 18 ~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~I 54 (726)
.+..|+|||+|..|+.+|-.|++.|+. ++|+|....
T Consensus 2 ~~~dviIvGgG~aGl~~A~~L~~~G~~-v~v~E~~~~ 37 (392)
T PRK09126 2 MHSDIVVVGAGPAGLSFARSLAGSGLK-VTLIERQPL 37 (392)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCc-EEEEeCCCc
Confidence 356899999999999999999999985 888887653
No 242
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=80.32 E-value=2.1 Score=47.03 Aligned_cols=33 Identities=30% Similarity=0.515 Sum_probs=29.2
Q ss_pred CcEEEEcC-chHHHHHHHHHHHhCCCe------EEEEeCC
Q psy9783 20 SKVLVVGA-GGIGCELLKNLVLSGFSN------IEIVDLD 52 (726)
Q Consensus 20 ~kVlvVGa-GgiGceiaknLal~Gv~~------i~iiD~D 52 (726)
.||+|+|| |.+|+.++..|+..|+-. |.|+|.+
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~ 40 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIP 40 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecC
Confidence 48999999 999999999999988754 9999864
No 243
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=80.25 E-value=2.3 Score=45.91 Aligned_cols=33 Identities=18% Similarity=0.328 Sum_probs=29.3
Q ss_pred cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
..+|.|+|+|.+|+.+++.|+..|. +++++|.+
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~-~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGH-RVRVWSRR 36 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 4689999999999999999999995 68888865
No 244
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=80.20 E-value=2.3 Score=46.00 Aligned_cols=36 Identities=22% Similarity=0.385 Sum_probs=29.4
Q ss_pred HhcCcEEEEc-CchHHHHHHHHHHHhC-CCeEEEEeCC
Q psy9783 17 IKKSKVLVVG-AGGIGCELLKNLVLSG-FSNIEIVDLD 52 (726)
Q Consensus 17 L~~~kVlvVG-aGgiGceiaknLal~G-v~~i~iiD~D 52 (726)
+.+++|||.| +|+||.++++.|+..| ..+++++|.+
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~ 39 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRD 39 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCC
Confidence 3567899998 5999999999999987 4578888754
No 245
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=80.13 E-value=2.8 Score=50.02 Aligned_cols=34 Identities=26% Similarity=0.509 Sum_probs=30.7
Q ss_pred cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783 19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDT 53 (726)
Q Consensus 19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~ 53 (726)
+.+|+|+|+|.+|..+++.|...|+ .++++|.|.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~ 433 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDP 433 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCC-CEEEEECCH
Confidence 4689999999999999999999997 589999885
No 246
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=80.11 E-value=2 Score=46.24 Aligned_cols=31 Identities=26% Similarity=0.613 Sum_probs=28.2
Q ss_pred EEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 22 VLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 22 VlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
|.|||+|.+|+-++-.|++.|..+++++|-|
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~ 31 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIV 31 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCC
Confidence 5799999999999999999887699999976
No 247
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=80.07 E-value=2.1 Score=41.69 Aligned_cols=32 Identities=31% Similarity=0.473 Sum_probs=27.6
Q ss_pred cEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783 21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDT 53 (726)
Q Consensus 21 kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~ 53 (726)
||.|+|+|..|+.+|..|+..| .++++...|.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g-~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNG-HEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCT-EEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcC-CEEEEEeccH
Confidence 6999999999999999999999 6677766543
No 248
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=80.05 E-value=2 Score=47.94 Aligned_cols=31 Identities=26% Similarity=0.448 Sum_probs=28.2
Q ss_pred cEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 21 kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
+|+|||+|..||..|..|++.|+. +.|+|..
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~~-V~llE~~ 32 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGIQ-TFLLERK 32 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCc-EEEEecC
Confidence 799999999999999999999975 8888854
No 249
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=80.04 E-value=2 Score=47.37 Aligned_cols=34 Identities=24% Similarity=0.453 Sum_probs=30.6
Q ss_pred cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783 19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDT 53 (726)
Q Consensus 19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~ 53 (726)
...|+|||+|..|+.+|-.|++.|+. ++|+|...
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~~G~~-v~liE~~~ 39 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALADAGLS-VALVEGRE 39 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCE-EEEEeCCC
Confidence 45799999999999999999999986 99999764
No 250
>PRK06500 short chain dehydrogenase; Provisional
Probab=79.94 E-value=2.1 Score=43.31 Aligned_cols=35 Identities=26% Similarity=0.529 Sum_probs=29.0
Q ss_pred HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 17 IKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 17 L~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
+.+++|+|.| .|+||.++++.|+..|. ++.+++.+
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~-~v~~~~r~ 39 (249)
T PRK06500 4 LQGKTALITGGTSGIGLETARQFLAEGA-RVAITGRD 39 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCC
Confidence 5678899998 59999999999999997 57776543
No 251
>PRK05875 short chain dehydrogenase; Provisional
Probab=79.87 E-value=2.4 Score=43.95 Aligned_cols=35 Identities=31% Similarity=0.485 Sum_probs=29.9
Q ss_pred HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 17 IKKSKVLVVGA-GGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 17 L~~~kVlvVGa-GgiGceiaknLal~Gv~~i~iiD~D 52 (726)
+.+++++|.|+ |+||.++++.|+..|. ++.+++.+
T Consensus 5 ~~~k~vlItGasg~IG~~la~~l~~~G~-~V~~~~r~ 40 (276)
T PRK05875 5 FQDRTYLVTGGGSGIGKGVAAGLVAAGA-AVMIVGRN 40 (276)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeCC
Confidence 56789999995 8999999999999997 67777643
No 252
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=79.85 E-value=2 Score=47.06 Aligned_cols=34 Identities=21% Similarity=0.396 Sum_probs=30.1
Q ss_pred cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783 19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDT 53 (726)
Q Consensus 19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~ 53 (726)
...|+|||+|..|+.+|-.|++.|+ +++|+|.+.
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~~G~-~v~liE~~~ 40 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALARAGA-SVALVAPEP 40 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCC-eEEEEeCCC
Confidence 3479999999999999999999996 599999764
No 253
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=79.80 E-value=2.3 Score=43.70 Aligned_cols=35 Identities=20% Similarity=0.335 Sum_probs=29.9
Q ss_pred HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 16 LIKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 16 kL~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~ 51 (726)
++.+++++|.| .|+||..+++.|+..|. ++.+++.
T Consensus 9 ~~~~k~ilItGa~g~IG~~la~~l~~~G~-~V~~~~r 44 (259)
T PRK08213 9 DLSGKTALVTGGSRGLGLQIAEALGEAGA-RVVLSAR 44 (259)
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeC
Confidence 46788999998 69999999999999997 5777764
No 254
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=79.79 E-value=2.5 Score=44.00 Aligned_cols=32 Identities=19% Similarity=0.256 Sum_probs=29.0
Q ss_pred cEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783 21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDT 53 (726)
Q Consensus 21 kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~ 53 (726)
+|+|||+|..|.+.|..|.+.|+. ++|+|...
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~~-v~lie~~~ 33 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANLK-TLIIEGME 33 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCC-EEEEeccC
Confidence 699999999999999999999975 99999754
No 255
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=79.77 E-value=1.9 Score=47.67 Aligned_cols=40 Identities=23% Similarity=0.380 Sum_probs=34.6
Q ss_pred cchhhhhhhhchhhhhhccccC--cchhhhHHHHHHhhCCCC
Q psy9783 135 HTSIIRFLHLNRQFLFHKQHVG--KSKAQVARNSALNFNPDA 174 (726)
Q Consensus 135 ~~~~~~~~~l~~q~l~~~~hvg--~sk~~~ak~~~~~~np~~ 174 (726)
-...++..|||||+||...++| ++|+.++++.+.++||++
T Consensus 55 D~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v 96 (338)
T PRK12475 55 DRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEV 96 (338)
T ss_pred cCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCc
Confidence 3345788899999999999985 899999999999999874
No 256
>PRK08605 D-lactate dehydrogenase; Validated
Probab=79.77 E-value=2.3 Score=46.81 Aligned_cols=35 Identities=34% Similarity=0.518 Sum_probs=28.3
Q ss_pred HHhcCcEEEEcCchHHHHHHHHHHHhCCC-eEEEEeC
Q psy9783 16 LIKKSKVLVVGAGGIGCELLKNLVLSGFS-NIEIVDL 51 (726)
Q Consensus 16 kL~~~kVlvVGaGgiGceiaknLal~Gv~-~i~iiD~ 51 (726)
.|.+++|.|||+|.||..+++.|+. |+| ++...|.
T Consensus 143 ~l~g~~VgIIG~G~IG~~vA~~L~~-~~g~~V~~~d~ 178 (332)
T PRK08605 143 SIKDLKVAVIGTGRIGLAVAKIFAK-GYGSDVVAYDP 178 (332)
T ss_pred eeCCCEEEEECCCHHHHHHHHHHHh-cCCCEEEEECC
Confidence 5889999999999999999999953 554 4666553
No 257
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=79.67 E-value=2.3 Score=48.75 Aligned_cols=31 Identities=26% Similarity=0.407 Sum_probs=27.8
Q ss_pred cEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 21 kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
+|+|||+|-.|||+|-.|++.|+ +++|+++.
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~-~V~LiE~r 32 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGV-PVILYEMR 32 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCC-cEEEEecc
Confidence 79999999999999999999996 58888754
No 258
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=79.57 E-value=2.9 Score=46.35 Aligned_cols=30 Identities=37% Similarity=0.551 Sum_probs=25.2
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCC-CeEEEE
Q psy9783 20 SKVLVVGAGGIGCELLKNLVLSGF-SNIEIV 49 (726)
Q Consensus 20 ~kVlvVGaGgiGceiaknLal~Gv-~~i~ii 49 (726)
.||.|+|+|.||-.+++.|...++ .+|.|+
T Consensus 2 ~~IaInGfGrIGR~~lr~l~e~~~~~~l~vv 32 (336)
T PRK13535 2 IRVAINGFGRIGRNVLRALYESGRRAEITVV 32 (336)
T ss_pred eEEEEECcCHHHHHHHHHHHhcCCCCceEEE
Confidence 379999999999999999987755 467776
No 259
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=79.55 E-value=1.9 Score=47.26 Aligned_cols=32 Identities=28% Similarity=0.388 Sum_probs=27.4
Q ss_pred HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEE
Q psy9783 17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIV 49 (726)
Q Consensus 17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~ii 49 (726)
|++++|.|||+|.+|..++++|..+|+. +.+.
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~-Viv~ 32 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGLN-VIVG 32 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCCe-EEEE
Confidence 4678999999999999999999999973 4443
No 260
>PRK07831 short chain dehydrogenase; Provisional
Probab=79.47 E-value=2.2 Score=43.94 Aligned_cols=35 Identities=34% Similarity=0.530 Sum_probs=28.9
Q ss_pred HHhcCcEEEEcC-c-hHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 16 LIKKSKVLVVGA-G-GIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 16 kL~~~kVlvVGa-G-giGceiaknLal~Gv~~i~iiD~ 51 (726)
.+.+++++|.|+ | |||..+++.|+..|.. +.++|.
T Consensus 14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~-V~~~~~ 50 (262)
T PRK07831 14 LLAGKVVLVTAAAGTGIGSATARRALEEGAR-VVISDI 50 (262)
T ss_pred ccCCCEEEEECCCcccHHHHHHHHHHHcCCE-EEEEeC
Confidence 455789999996 6 8999999999999975 777653
No 261
>PRK07236 hypothetical protein; Provisional
Probab=79.26 E-value=2.3 Score=46.86 Aligned_cols=35 Identities=14% Similarity=0.258 Sum_probs=30.8
Q ss_pred HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
+...+|+|||+|-.|..+|-.|++.|+. ++|+|..
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~-v~v~E~~ 38 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWD-VDVFERS 38 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCC-EEEEecC
Confidence 3457899999999999999999999985 8888865
No 262
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=79.25 E-value=2.4 Score=42.39 Aligned_cols=34 Identities=29% Similarity=0.455 Sum_probs=28.8
Q ss_pred hcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 18 KKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 18 ~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
.+++|+|.| .|+||.++++.|+..|.. +.+++.+
T Consensus 4 ~~~~ilItGasg~iG~~l~~~l~~~g~~-v~~~~r~ 38 (246)
T PRK05653 4 QGKTALVTGASRGIGRAIALRLAADGAK-VVIYDSN 38 (246)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCC
Confidence 457899998 599999999999999976 7777755
No 263
>PRK06198 short chain dehydrogenase; Provisional
Probab=79.24 E-value=2.5 Score=43.31 Aligned_cols=36 Identities=19% Similarity=0.415 Sum_probs=31.3
Q ss_pred HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 17 IKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 17 L~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
+.+++|+|+| .|+||..+++.|+..|..++.+++.+
T Consensus 4 ~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~ 40 (260)
T PRK06198 4 LDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRN 40 (260)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCC
Confidence 5678899998 58999999999999998778888764
No 264
>PRK08265 short chain dehydrogenase; Provisional
Probab=79.20 E-value=2.6 Score=43.63 Aligned_cols=35 Identities=31% Similarity=0.537 Sum_probs=29.9
Q ss_pred HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 17 IKKSKVLVVGA-GGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 17 L~~~kVlvVGa-GgiGceiaknLal~Gv~~i~iiD~D 52 (726)
+.+++++|.|+ ||||.++++.|+..|. ++.++|.+
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~ 39 (261)
T PRK08265 4 LAGKVAIVTGGATLIGAAVARALVAAGA-RVAIVDID 39 (261)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 56788999985 9999999999999997 78887754
No 265
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=79.13 E-value=2.6 Score=46.59 Aligned_cols=33 Identities=18% Similarity=0.394 Sum_probs=29.6
Q ss_pred CcEEEEcCchHHHHHHHHHHHh--CCCeEEEEeCCc
Q psy9783 20 SKVLVVGAGGIGCELLKNLVLS--GFSNIEIVDLDT 53 (726)
Q Consensus 20 ~kVlvVGaGgiGceiaknLal~--Gv~~i~iiD~D~ 53 (726)
..|+|||+|.+|+.+|-.|++. |. +++|+|...
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~~g~-~V~llE~~~ 37 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERYPGA-RIAVLEKES 37 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhCCCC-eEEEEeCCC
Confidence 5799999999999999999998 74 799999763
No 266
>PTZ00325 malate dehydrogenase; Provisional
Probab=79.04 E-value=2.2 Score=46.93 Aligned_cols=35 Identities=37% Similarity=0.488 Sum_probs=30.4
Q ss_pred HhcCcEEEEcC-chHHHHHHHHHHHhCCC-eEEEEeC
Q psy9783 17 IKKSKVLVVGA-GGIGCELLKNLVLSGFS-NIEIVDL 51 (726)
Q Consensus 17 L~~~kVlvVGa-GgiGceiaknLal~Gv~-~i~iiD~ 51 (726)
++-.||+|+|+ |.+|+.++-.|+..|.. +|.++|-
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di 42 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDI 42 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEec
Confidence 34569999998 99999999999988875 7999997
No 267
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=78.96 E-value=2.7 Score=45.67 Aligned_cols=32 Identities=25% Similarity=0.322 Sum_probs=27.6
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
.+|.|+|+|.+|+.++..|+..|. +++++|.+
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~-~V~~~~r~ 36 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGV-PVRLWARR 36 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCC-eEEEEeCC
Confidence 479999999999999999999995 47777653
No 268
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=78.92 E-value=2.6 Score=45.73 Aligned_cols=35 Identities=34% Similarity=0.267 Sum_probs=29.1
Q ss_pred HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 17 IKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 17 L~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
+++++|+|.| +|.||+++++.|+..|. +++++|.+
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~-~V~~~~r~ 37 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGA-EVYGYSLD 37 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCC-EEEEEeCC
Confidence 4578999999 58899999999999994 57777754
No 269
>KOG4169|consensus
Probab=78.87 E-value=1.7 Score=45.86 Aligned_cols=56 Identities=30% Similarity=0.451 Sum_probs=42.2
Q ss_pred HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHHHHhhhcCCCCceee
Q psy9783 17 IKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIYY 93 (726)
Q Consensus 17 L~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~~~l~~~np~~~v~~ 93 (726)
+.+++++++| |||||-++.|.|..-|+..+.|.|. . .| .+ +-..|+.+||.+.+-+
T Consensus 3 ~tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~--~--En----------------~~-a~akL~ai~p~~~v~F 59 (261)
T KOG4169|consen 3 LTGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDS--E--EN----------------PE-AIAKLQAINPSVSVIF 59 (261)
T ss_pred ccCceEEEecCCchhhHHHHHHHHHcCchheeehhh--h--hC----------------HH-HHHHHhccCCCceEEE
Confidence 4578888885 9999999999999999998888652 1 12 22 2235788899887664
No 270
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=78.86 E-value=3.3 Score=36.36 Aligned_cols=23 Identities=39% Similarity=0.777 Sum_probs=21.8
Q ss_pred cEEEEcCchHHHHHHHHHHHhCC
Q psy9783 21 KVLVVGAGGIGCELLKNLVLSGF 43 (726)
Q Consensus 21 kVlvVGaGgiGceiaknLal~Gv 43 (726)
||.+||+|.+|..+++.|+..|+
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~ 23 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGI 23 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS
T ss_pred CEEEECCCHHHHHHHHHHHHCCC
Confidence 68999999999999999999995
No 271
>PRK05867 short chain dehydrogenase; Provisional
Probab=78.83 E-value=2.7 Score=43.12 Aligned_cols=34 Identities=26% Similarity=0.438 Sum_probs=28.3
Q ss_pred HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 17 IKKSKVLVVGA-GGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 17 L~~~kVlvVGa-GgiGceiaknLal~Gv~~i~iiD~ 51 (726)
+.+++++|.|+ ||||.++++.|+..|. ++.+++.
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r 41 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGA-QVAIAAR 41 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcC
Confidence 56788999995 8999999999999997 4666653
No 272
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=78.81 E-value=9.2 Score=43.13 Aligned_cols=35 Identities=9% Similarity=0.317 Sum_probs=29.0
Q ss_pred cccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccC
Q psy9783 193 FKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTA 229 (726)
Q Consensus 193 ~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~ 229 (726)
++++|+|+.|+.+-.++.++..+ ..+.++|+.+..
T Consensus 102 ~~~~DvVf~Alp~~~s~~i~~~~--~~g~~VIDlSs~ 136 (381)
T PLN02968 102 FSDVDAVFCCLPHGTTQEIIKAL--PKDLKIVDLSAD 136 (381)
T ss_pred hcCCCEEEEcCCHHHHHHHHHHH--hCCCEEEEcCch
Confidence 47899999999999999999886 467888886643
No 273
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=78.78 E-value=2.2 Score=47.18 Aligned_cols=34 Identities=32% Similarity=0.532 Sum_probs=30.1
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCcc
Q psy9783 20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTI 54 (726)
Q Consensus 20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~I 54 (726)
..|+|||+|..|+.+|-.|++.|+ +++|+|....
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~-~v~viE~~~~ 36 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQGSGL-EVLLLDGGPL 36 (405)
T ss_pred ccEEEECccHHHHHHHHHHhcCCC-EEEEEcCCCc
Confidence 479999999999999999999997 5899997653
No 274
>PRK06753 hypothetical protein; Provisional
Probab=78.75 E-value=2.7 Score=45.75 Aligned_cols=33 Identities=21% Similarity=0.330 Sum_probs=29.3
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783 20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDT 53 (726)
Q Consensus 20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~ 53 (726)
.+|+|||+|-.|+.+|..|++.|+. ++|++.+.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~-v~v~E~~~ 33 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHE-VKVFEKNE 33 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCc-EEEEecCC
Confidence 3799999999999999999999986 88888654
No 275
>PRK06940 short chain dehydrogenase; Provisional
Probab=78.74 E-value=2.7 Score=44.13 Aligned_cols=32 Identities=34% Similarity=0.684 Sum_probs=26.2
Q ss_pred cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
++.++|.|+||||.++++.|+ .| .++.++|.+
T Consensus 2 ~k~~lItGa~gIG~~la~~l~-~G-~~Vv~~~r~ 33 (275)
T PRK06940 2 KEVVVVIGAGGIGQAIARRVG-AG-KKVLLADYN 33 (275)
T ss_pred CCEEEEECCChHHHHHHHHHh-CC-CEEEEEeCC
Confidence 457888899999999999996 78 468887753
No 276
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=78.72 E-value=2 Score=46.49 Aligned_cols=35 Identities=17% Similarity=0.256 Sum_probs=31.8
Q ss_pred HHhcCcEEEEcCch-HHHHHHHHHHHhCCCeEEEEeC
Q psy9783 16 LIKKSKVLVVGAGG-IGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 16 kL~~~kVlvVGaGg-iGceiaknLal~Gv~~i~iiD~ 51 (726)
.+..++|+|+|+|+ +|.-++..|...|. .+++++.
T Consensus 156 ~l~Gk~vvViG~gg~vGkpia~~L~~~ga-tVtv~~~ 191 (283)
T PRK14192 156 ELAGKHAVVVGRSAILGKPMAMMLLNANA-TVTICHS 191 (283)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCC-EEEEEeC
Confidence 36788999999999 99999999999998 8999874
No 277
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=78.70 E-value=2.5 Score=48.95 Aligned_cols=32 Identities=25% Similarity=0.499 Sum_probs=28.6
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
.+|.|||+|.+|+.++.+|+..|+ .++++|.+
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~-~V~v~D~~ 36 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGI-DVAVFDPH 36 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCC
Confidence 479999999999999999999997 68888863
No 278
>PRK06523 short chain dehydrogenase; Provisional
Probab=78.65 E-value=2.3 Score=43.63 Aligned_cols=37 Identities=22% Similarity=0.363 Sum_probs=31.3
Q ss_pred HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783 16 LIKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLDT 53 (726)
Q Consensus 16 kL~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D~ 53 (726)
++.+++|+|.| .||||.++++.|+..|. ++.+++.+.
T Consensus 6 ~~~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~r~~ 43 (260)
T PRK06523 6 ELAGKRALVTGGTKGIGAATVARLLEAGA-RVVTTARSR 43 (260)
T ss_pred CCCCCEEEEECCCCchhHHHHHHHHHCCC-EEEEEeCCh
Confidence 46778999998 58999999999999997 588887653
No 279
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=78.54 E-value=2.4 Score=46.20 Aligned_cols=36 Identities=25% Similarity=0.215 Sum_probs=30.2
Q ss_pred HHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 15 DLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 15 ~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~ 51 (726)
..|.+++|.|||.|.||.++|+.+.-.|. ++..+|.
T Consensus 141 ~~L~gktvGIiG~G~IG~~vA~~~~~fgm-~V~~~d~ 176 (311)
T PRK08410 141 GEIKGKKWGIIGLGTIGKRVAKIAQAFGA-KVVYYST 176 (311)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhhcCC-EEEEECC
Confidence 36899999999999999999999976665 5666665
No 280
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=78.54 E-value=2.7 Score=46.10 Aligned_cols=33 Identities=42% Similarity=0.567 Sum_probs=29.6
Q ss_pred CcEEEEcC-chHHHHHHHHHHHhCC-CeEEEEeCC
Q psy9783 20 SKVLVVGA-GGIGCELLKNLVLSGF-SNIEIVDLD 52 (726)
Q Consensus 20 ~kVlvVGa-GgiGceiaknLal~Gv-~~i~iiD~D 52 (726)
.||.|||+ |.+|+.+|-.|+..|+ .+|.|+|-.
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~ 35 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV 35 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC
Confidence 38999999 9999999999999997 589999965
No 281
>PRK07576 short chain dehydrogenase; Provisional
Probab=78.51 E-value=2.4 Score=44.01 Aligned_cols=36 Identities=19% Similarity=0.360 Sum_probs=30.4
Q ss_pred HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 16 LIKKSKVLVVGA-GGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 16 kL~~~kVlvVGa-GgiGceiaknLal~Gv~~i~iiD~D 52 (726)
++.+++|+|.|+ ||||.++++.|+..|.. +.++|.+
T Consensus 6 ~~~~k~ilItGasggIG~~la~~l~~~G~~-V~~~~r~ 42 (264)
T PRK07576 6 DFAGKNVVVVGGTSGINLGIAQAFARAGAN-VAVASRS 42 (264)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCC
Confidence 467889999985 89999999999999864 7887754
No 282
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=78.50 E-value=2.7 Score=43.13 Aligned_cols=35 Identities=29% Similarity=0.360 Sum_probs=29.3
Q ss_pred HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 16 LIKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 16 kL~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~ 51 (726)
++.+++++|.| .||||.++++.|+..|. ++.++|.
T Consensus 5 ~~~~k~vlVtGas~gIG~~la~~l~~~G~-~v~~~~r 40 (260)
T PRK12823 5 RFAGKVVVVTGAAQGIGRGVALRAAAEGA-RVVLVDR 40 (260)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 46778899998 58999999999999996 5777764
No 283
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=78.46 E-value=7.2 Score=43.21 Aligned_cols=35 Identities=20% Similarity=0.238 Sum_probs=28.2
Q ss_pred ccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEc
Q psy9783 192 YFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESG 227 (726)
Q Consensus 192 ~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg 227 (726)
+..++|+|+.|+.+..++.++..+ .+.++.+|+.+
T Consensus 65 ~~~~~DvVf~alP~~~s~~~~~~~-~~~G~~VIDlS 99 (346)
T TIGR01850 65 IAEDADVVFLALPHGVSAELAPEL-LAAGVKVIDLS 99 (346)
T ss_pred hhcCCCEEEECCCchHHHHHHHHH-HhCCCEEEeCC
Confidence 345799999999999888888765 45788888865
No 284
>PRK08507 prephenate dehydrogenase; Validated
Probab=78.26 E-value=3 Score=44.21 Aligned_cols=31 Identities=26% Similarity=0.270 Sum_probs=26.6
Q ss_pred cEEEEcCchHHHHHHHHHHHhCCC-eEEEEeC
Q psy9783 21 KVLVVGAGGIGCELLKNLVLSGFS-NIEIVDL 51 (726)
Q Consensus 21 kVlvVGaGgiGceiaknLal~Gv~-~i~iiD~ 51 (726)
+|.|||+|.+|..++..|...|+. .+.++|.
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~ 33 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDH 33 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 699999999999999999999974 5666653
No 285
>PRK06932 glycerate dehydrogenase; Provisional
Probab=78.24 E-value=2.2 Score=46.57 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=29.1
Q ss_pred HHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEe
Q psy9783 15 DLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVD 50 (726)
Q Consensus 15 ~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD 50 (726)
..|..++|.|||.|.||.++++.|.-.|. ++..+|
T Consensus 143 ~~l~gktvgIiG~G~IG~~va~~l~~fg~-~V~~~~ 177 (314)
T PRK06932 143 TDVRGSTLGVFGKGCLGTEVGRLAQALGM-KVLYAE 177 (314)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhcCCC-EEEEEC
Confidence 36899999999999999999999987776 355554
No 286
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=78.22 E-value=2.9 Score=43.46 Aligned_cols=35 Identities=26% Similarity=0.510 Sum_probs=29.7
Q ss_pred HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 17 IKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 17 L~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
+.+++++|.| .||||.++++.|+..|. ++.++|.+
T Consensus 8 ~~~k~vlVtGas~giG~~ia~~l~~~G~-~V~~~~r~ 43 (278)
T PRK08277 8 LKGKVAVITGGGGVLGGAMAKELARAGA-KVAILDRN 43 (278)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 5678899998 58999999999999997 58887754
No 287
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=78.02 E-value=0.81 Score=48.11 Aligned_cols=38 Identities=32% Similarity=0.517 Sum_probs=31.5
Q ss_pred eeecchhhhhhhhchhhhhhccccCcchhhhHHHHHHh
Q psy9783 132 VAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALN 169 (726)
Q Consensus 132 ~~~~~~~~~~~~l~~q~l~~~~hvg~sk~~~ak~~~~~ 169 (726)
...-.-.++..+||||+||+..|+|++|+..+++.+++
T Consensus 27 ~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~ 64 (234)
T cd01484 27 HVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVND 64 (234)
T ss_pred EEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHH
Confidence 33334457788999999999999999999999988865
No 288
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=77.97 E-value=1.4 Score=50.76 Aligned_cols=41 Identities=24% Similarity=0.315 Sum_probs=35.2
Q ss_pred ccccCHHHH----HHHhcCcEEEEcCchHHHHHHHHHHHhCCCeE
Q psy9783 6 PGVFEKDLE----DLIKKSKVLVVGAGGIGCELLKNLVLSGFSNI 46 (726)
Q Consensus 6 ~~~~g~~~q----~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i 46 (726)
-|+|+.... ..|++++|+|||+|.+|..-+-||--+|+..+
T Consensus 19 ~r~~~r~ef~~~~~~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVv 63 (487)
T PRK05225 19 CRFMDRDEFADGASYLKGKKIVIVGCGAQGLNQGLNMRDSGLDIS 63 (487)
T ss_pred ceecchhhccchhHHhCCCEEEEEccCHHHHHHhCCCccccceeE
Confidence 467777766 78999999999999999999999999998533
No 289
>PRK06949 short chain dehydrogenase; Provisional
Probab=77.92 E-value=3.1 Score=42.46 Aligned_cols=34 Identities=21% Similarity=0.442 Sum_probs=28.8
Q ss_pred HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 17 IKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 17 L~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~ 51 (726)
+.+++|+|.| .|+||.++++.|+..|. ++.+++.
T Consensus 7 ~~~k~ilItGasg~IG~~~a~~l~~~G~-~Vi~~~r 41 (258)
T PRK06949 7 LEGKVALVTGASSGLGARFAQVLAQAGA-KVVLASR 41 (258)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 5678999998 59999999999999997 5777654
No 290
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=77.92 E-value=3.1 Score=48.18 Aligned_cols=42 Identities=19% Similarity=0.363 Sum_probs=34.1
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcC
Q psy9783 20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQ 62 (726)
Q Consensus 20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQ 62 (726)
..|+|||.|.+||.+|..|++.|++ +.|+|...+-...-.|.
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~rGl~-V~LvEk~d~~~GtS~~s 48 (508)
T PRK12266 7 YDLLVIGGGINGAGIARDAAGRGLS-VLLCEQDDLASATSSAS 48 (508)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCe-EEEEecCCCCCCccccc
Confidence 5699999999999999999999986 89999876644333343
No 291
>PRK06847 hypothetical protein; Provisional
Probab=77.89 E-value=3 Score=45.40 Aligned_cols=34 Identities=32% Similarity=0.516 Sum_probs=29.8
Q ss_pred cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783 19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDT 53 (726)
Q Consensus 19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~ 53 (726)
..+|+|||+|..|+.+|..|++.|+. ++|+|.+.
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~-v~v~E~~~ 37 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIA-VDLVEIDP 37 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCC-EEEEecCC
Confidence 35799999999999999999999985 88888653
No 292
>PRK05717 oxidoreductase; Validated
Probab=77.77 E-value=3 Score=42.79 Aligned_cols=35 Identities=34% Similarity=0.554 Sum_probs=29.2
Q ss_pred HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 17 IKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 17 L~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
+.+++|+|.| .|+||.++++.|+..|. ++.++|.+
T Consensus 8 ~~~k~vlItG~sg~IG~~~a~~l~~~g~-~v~~~~~~ 43 (255)
T PRK05717 8 HNGRVALVTGAARGIGLGIAAWLIAEGW-QVVLADLD 43 (255)
T ss_pred cCCCEEEEeCCcchHHHHHHHHHHHcCC-EEEEEcCC
Confidence 4567899998 69999999999999995 68888743
No 293
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=77.73 E-value=2.5 Score=50.43 Aligned_cols=41 Identities=24% Similarity=0.453 Sum_probs=33.8
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCc
Q psy9783 20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNR 61 (726)
Q Consensus 20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnR 61 (726)
..|+|||.|.+||.+|..|++.|.+ +.|||.+.+--..-.|
T Consensus 72 ~DVvVIGGGi~Ga~~A~~lA~rGl~-V~LvE~~d~a~GtSsr 112 (627)
T PLN02464 72 LDVLVVGGGATGAGVALDAATRGLR-VGLVEREDFSSGTSSR 112 (627)
T ss_pred cCEEEECCCHHHHHHHHHHHhCCCE-EEEEeccccCCCcccc
Confidence 4699999999999999999999985 9999988664443333
No 294
>PLN02253 xanthoxin dehydrogenase
Probab=77.69 E-value=2.9 Score=43.55 Aligned_cols=35 Identities=34% Similarity=0.467 Sum_probs=29.3
Q ss_pred HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 16 LIKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 16 kL~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~ 51 (726)
.|.+++++|.| +||||.++++.|+..|. ++.++|.
T Consensus 15 ~l~~k~~lItGas~gIG~~la~~l~~~G~-~v~~~~~ 50 (280)
T PLN02253 15 RLLGKVALVTGGATGIGESIVRLFHKHGA-KVCIVDL 50 (280)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeC
Confidence 46678899998 78999999999999995 5777764
No 295
>PRK06184 hypothetical protein; Provisional
Probab=77.65 E-value=2.5 Score=48.54 Aligned_cols=33 Identities=33% Similarity=0.548 Sum_probs=30.0
Q ss_pred cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
...|+|||+|..|..+|-.|++.|+. ++|+|..
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~-v~viE~~ 35 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVS-FRLIEKA 35 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCc-EEEEeCC
Confidence 56799999999999999999999995 9999964
No 296
>PRK12829 short chain dehydrogenase; Provisional
Probab=77.58 E-value=3 Score=42.55 Aligned_cols=38 Identities=29% Similarity=0.505 Sum_probs=32.0
Q ss_pred HHHHHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 13 LEDLIKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 13 ~q~kL~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~ 51 (726)
....+++++++|.| .|+||..+++.|+..|.. +.+++.
T Consensus 5 ~~~~~~~~~vlItGa~g~iG~~~a~~L~~~g~~-V~~~~r 43 (264)
T PRK12829 5 LLKPLDGLRVLVTGGASGIGRAIAEAFAEAGAR-VHVCDV 43 (264)
T ss_pred HhhccCCCEEEEeCCCCcHHHHHHHHHHHCCCE-EEEEeC
Confidence 34457889999998 599999999999999974 888774
No 297
>PRK08163 salicylate hydroxylase; Provisional
Probab=77.44 E-value=2.9 Score=45.88 Aligned_cols=34 Identities=24% Similarity=0.376 Sum_probs=30.3
Q ss_pred cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783 19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDT 53 (726)
Q Consensus 19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~ 53 (726)
..+|+|||+|-.|..+|-.|++.|+. ++|+|...
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~-v~v~Er~~ 37 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIK-VKLLEQAA 37 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCc-EEEEeeCc
Confidence 46899999999999999999999984 89998753
No 298
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=77.42 E-value=16 Score=42.60 Aligned_cols=32 Identities=25% Similarity=0.411 Sum_probs=27.7
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
.+|.+||+|-.|..+++||+..|+ ++++.|.+
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~-~V~V~NRt 38 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGF-PISVYNRT 38 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCC-eEEEECCC
Confidence 479999999999999999999997 57777643
No 299
>PRK12862 malic enzyme; Reviewed
Probab=77.42 E-value=2.3 Score=51.94 Aligned_cols=40 Identities=30% Similarity=0.401 Sum_probs=35.9
Q ss_pred HHHhcCcEEEEcCchHHHHHHHHHHHhCCC--eEEEEeCCcc
Q psy9783 15 DLIKKSKVLVVGAGGIGCELLKNLVLSGFS--NIEIVDLDTI 54 (726)
Q Consensus 15 ~kL~~~kVlvVGaGgiGceiaknLal~Gv~--~i~iiD~D~I 54 (726)
.+|.+.||+++|||+.|..+++.|+..|++ +|.++|..-+
T Consensus 189 ~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~ 230 (763)
T PRK12862 189 KDIEDVKLVASGAGAAALACLDLLVSLGVKRENIWVTDIKGV 230 (763)
T ss_pred CChhhcEEEEEChhHHHHHHHHHHHHcCCCcccEEEEcCCCe
Confidence 467889999999999999999999999996 9999996654
No 300
>PRK12939 short chain dehydrogenase; Provisional
Probab=77.40 E-value=3.2 Score=41.90 Aligned_cols=34 Identities=26% Similarity=0.464 Sum_probs=27.8
Q ss_pred HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 17 IKKSKVLVVGA-GGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 17 L~~~kVlvVGa-GgiGceiaknLal~Gv~~i~iiD~ 51 (726)
+.+++|+|.|+ |+||.++++.|+..|. ++.+++.
T Consensus 5 ~~~~~vlItGa~g~iG~~la~~l~~~G~-~v~~~~r 39 (250)
T PRK12939 5 LAGKRALVTGAARGLGAAFAEALAEAGA-TVAFNDG 39 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHcCC-EEEEEeC
Confidence 45788999985 9999999999999996 4666653
No 301
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=77.37 E-value=7.2 Score=43.12 Aligned_cols=34 Identities=6% Similarity=0.202 Sum_probs=27.3
Q ss_pred cccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEc
Q psy9783 193 FKQFTLVMNALDNRAARNHVNRMCLASEVPLIESG 227 (726)
Q Consensus 193 ~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg 227 (726)
+.++|+|+.|+.+..++.+..++ .+.+..+|+..
T Consensus 59 ~~~~D~v~~a~g~~~s~~~a~~~-~~~G~~VID~s 92 (339)
T TIGR01296 59 FEGIDIALFSAGGSVSKEFAPKA-AKCGAIVIDNT 92 (339)
T ss_pred hcCCCEEEECCCHHHHHHHHHHH-HHCCCEEEECC
Confidence 47899999999999998887765 45677788655
No 302
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=77.36 E-value=2.6 Score=46.26 Aligned_cols=32 Identities=31% Similarity=0.515 Sum_probs=28.7
Q ss_pred CcEEEEcC-chHHHHHHHHHHHhCCC------eEEEEeC
Q psy9783 20 SKVLVVGA-GGIGCELLKNLVLSGFS------NIEIVDL 51 (726)
Q Consensus 20 ~kVlvVGa-GgiGceiaknLal~Gv~------~i~iiD~ 51 (726)
.||.|+|+ |.+|+.+|-.|+..|+- +|.|+|-
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di 41 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLEL 41 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEec
Confidence 58999999 99999999999998884 6999985
No 303
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=77.34 E-value=2.9 Score=46.16 Aligned_cols=34 Identities=29% Similarity=0.477 Sum_probs=30.4
Q ss_pred cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783 19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDT 53 (726)
Q Consensus 19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~ 53 (726)
..+|+|||+|..|+.+|-.|++.|+ +++|+|...
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~ 51 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGL-RIALIEAQP 51 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCC-EEEEEecCC
Confidence 3579999999999999999999997 589999765
No 304
>PRK05866 short chain dehydrogenase; Provisional
Probab=77.26 E-value=3.2 Score=44.25 Aligned_cols=35 Identities=23% Similarity=0.367 Sum_probs=29.2
Q ss_pred HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 16 LIKKSKVLVVGA-GGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 16 kL~~~kVlvVGa-GgiGceiaknLal~Gv~~i~iiD~ 51 (726)
.+.+++|+|.|+ ||||.++++.|+..|. ++.+++.
T Consensus 37 ~~~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R 72 (293)
T PRK05866 37 DLTGKRILLTGASSGIGEAAAEQFARRGA-TVVAVAR 72 (293)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEEC
Confidence 456788999985 9999999999999996 6777764
No 305
>PLN03139 formate dehydrogenase; Provisional
Probab=77.19 E-value=2.6 Score=47.60 Aligned_cols=35 Identities=31% Similarity=0.278 Sum_probs=30.6
Q ss_pred HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~ 51 (726)
.|.+++|.|||+|.||..+++.|...|+. +..+|.
T Consensus 196 ~L~gktVGIVG~G~IG~~vA~~L~afG~~-V~~~d~ 230 (386)
T PLN03139 196 DLEGKTVGTVGAGRIGRLLLQRLKPFNCN-LLYHDR 230 (386)
T ss_pred CCCCCEEEEEeecHHHHHHHHHHHHCCCE-EEEECC
Confidence 58899999999999999999999988874 666664
No 306
>PRK07680 late competence protein ComER; Validated
Probab=77.15 E-value=3.3 Score=43.87 Aligned_cols=31 Identities=26% Similarity=0.513 Sum_probs=26.3
Q ss_pred cEEEEcCchHHHHHHHHHHHhCC---CeEEEEeC
Q psy9783 21 KVLVVGAGGIGCELLKNLVLSGF---SNIEIVDL 51 (726)
Q Consensus 21 kVlvVGaGgiGceiaknLal~Gv---~~i~iiD~ 51 (726)
+|.|||+|.+|..+++.|...|+ ..+.++|.
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r 35 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNR 35 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECC
Confidence 69999999999999999999995 45666654
No 307
>PRK07588 hypothetical protein; Provisional
Probab=77.06 E-value=3.2 Score=45.72 Aligned_cols=32 Identities=28% Similarity=0.261 Sum_probs=29.1
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
.+|+|||+|..|+.+|..|++.|+. ++|++..
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~-v~v~E~~ 32 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHE-PTLIERA 32 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCc-eEEEeCC
Confidence 3799999999999999999999986 8999876
No 308
>PRK07326 short chain dehydrogenase; Provisional
Probab=76.97 E-value=3 Score=41.98 Aligned_cols=34 Identities=26% Similarity=0.561 Sum_probs=27.6
Q ss_pred HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 17 IKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 17 L~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~ 51 (726)
+.+.+|+|+| .|+||.++++.|+..|.. +.+++.
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~~~g~~-V~~~~r 38 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALLAEGYK-VAITAR 38 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCCCE-EEEeeC
Confidence 3457899998 589999999999999874 777653
No 309
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=76.94 E-value=3 Score=45.22 Aligned_cols=33 Identities=27% Similarity=0.555 Sum_probs=29.4
Q ss_pred cEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCcc
Q psy9783 21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTI 54 (726)
Q Consensus 21 kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~I 54 (726)
.|+|||+|..|+.+|..|++.|+ +++|+|...-
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~-~v~v~Er~~~ 33 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGL-KIALIEATPA 33 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCC-EEEEEeCCCc
Confidence 38999999999999999999997 6899987754
No 310
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=76.91 E-value=3.2 Score=40.89 Aligned_cols=29 Identities=21% Similarity=0.476 Sum_probs=22.6
Q ss_pred EEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 23 LVVGAGGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 23 lvVGaGgiGceiaknLal~Gv~~i~iiD~ 51 (726)
+|||+|.-|-..|..|...|+..++|+|.
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~ 29 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLER 29 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEES
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeC
Confidence 69999999999999999999988999994
No 311
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=76.90 E-value=14 Score=40.70 Aligned_cols=32 Identities=31% Similarity=0.589 Sum_probs=27.8
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
++|.|||+|-.|+-+|..++..| -.+++.|..
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G-~~V~l~D~~ 35 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAG-YDVVLKDIS 35 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcC-CceEEEeCC
Confidence 58999999999999999999955 558888855
No 312
>PLN02256 arogenate dehydrogenase
Probab=76.85 E-value=3 Score=45.43 Aligned_cols=43 Identities=28% Similarity=0.417 Sum_probs=33.8
Q ss_pred ccCHHHHHHH---hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 8 VFEKDLEDLI---KKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 8 ~~g~~~q~kL---~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~ 51 (726)
=+....|+.+ +..+|.|||+|.+|..+++.|...|. ++.++|.
T Consensus 22 ~~~~~~~~~~~~~~~~kI~IIG~G~mG~slA~~L~~~G~-~V~~~d~ 67 (304)
T PLN02256 22 DYESRLQEELEKSRKLKIGIVGFGNFGQFLAKTFVKQGH-TVLATSR 67 (304)
T ss_pred ChHhHHhHhhccCCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEEC
Confidence 3455566655 45689999999999999999999884 6778774
No 313
>PRK08017 oxidoreductase; Provisional
Probab=76.83 E-value=3.7 Score=41.79 Aligned_cols=32 Identities=28% Similarity=0.423 Sum_probs=27.1
Q ss_pred CcEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 20 SKVLVVGA-GGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 20 ~kVlvVGa-GgiGceiaknLal~Gv~~i~iiD~D 52 (726)
++|+|.|+ |+||..+++.|+..|. ++.+++.+
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~-~v~~~~r~ 35 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGY-RVLAACRK 35 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 57999998 9999999999999996 57776643
No 314
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=76.81 E-value=2.9 Score=45.99 Aligned_cols=32 Identities=31% Similarity=0.554 Sum_probs=28.3
Q ss_pred CcEEEEcC-chHHHHHHHHHHHhCC-C-----eEEEEeC
Q psy9783 20 SKVLVVGA-GGIGCELLKNLVLSGF-S-----NIEIVDL 51 (726)
Q Consensus 20 ~kVlvVGa-GgiGceiaknLal~Gv-~-----~i~iiD~ 51 (726)
.||.|||+ |.+|+.++-.|+..|+ + +|.|+|-
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di 42 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDI 42 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEec
Confidence 58999998 9999999999999987 4 6888874
No 315
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=76.72 E-value=2.5 Score=46.90 Aligned_cols=33 Identities=24% Similarity=0.420 Sum_probs=29.6
Q ss_pred cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
...|+|||+|..|..+|-.|++.|+. ++|+|..
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~-v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLR-IAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCE-EEEEcCC
Confidence 45799999999999999999999985 8999874
No 316
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=76.72 E-value=0.89 Score=49.40 Aligned_cols=37 Identities=41% Similarity=0.571 Sum_probs=30.1
Q ss_pred EeeecchhhhhhhhchhhhhhccccCcchhhhHHHHH
Q psy9783 131 IVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSA 167 (726)
Q Consensus 131 i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~~~ak~~~ 167 (726)
|...-...++..+||||+||+..|+|++|++.|++.+
T Consensus 26 I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l 62 (291)
T cd01488 26 IHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFV 62 (291)
T ss_pred EEEECCCEecccccCcCcccChHHcchHHHHHHHHHH
Confidence 3333444677889999999999999999999887776
No 317
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=76.71 E-value=2.9 Score=46.47 Aligned_cols=36 Identities=19% Similarity=0.443 Sum_probs=31.8
Q ss_pred hcCcEEEEcCchHHHHHHHHHHHhCCC-eEEEEeCCc
Q psy9783 18 KKSKVLVVGAGGIGCELLKNLVLSGFS-NIEIVDLDT 53 (726)
Q Consensus 18 ~~~kVlvVGaGgiGceiaknLal~Gv~-~i~iiD~D~ 53 (726)
+..+|+|||+|..|...|..|.+.|.. .|+|+|.+.
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~ 38 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDER 38 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCC
Confidence 467899999999999999999999984 899998653
No 318
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=76.69 E-value=11 Score=45.22 Aligned_cols=39 Identities=23% Similarity=0.365 Sum_probs=30.4
Q ss_pred HHHHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 14 EDLIKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 14 q~kL~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
...-++++|||.| +|-||+++++.|...|=.+++.+|..
T Consensus 310 ~~~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~ 349 (660)
T PRK08125 310 CSAKRRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIG 349 (660)
T ss_pred hhhhcCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCC
Confidence 3445677899999 69999999999998643467777754
No 319
>PRK09072 short chain dehydrogenase; Provisional
Probab=76.67 E-value=3.5 Score=42.54 Aligned_cols=35 Identities=34% Similarity=0.631 Sum_probs=29.4
Q ss_pred HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 17 IKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 17 L~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
|.+++|+|.| +|+||.++++.|+..|. ++.+++.+
T Consensus 3 ~~~~~vlItG~s~~iG~~ia~~l~~~G~-~V~~~~r~ 38 (263)
T PRK09072 3 LKDKRVLLTGASGGIGQALAEALAAAGA-RLLLVGRN 38 (263)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECC
Confidence 4567899998 69999999999999995 58888753
No 320
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=76.65 E-value=3.1 Score=45.76 Aligned_cols=33 Identities=30% Similarity=0.467 Sum_probs=29.0
Q ss_pred CcEEEEcC-chHHHHHHHHHHHhCCC------eEEEEeCC
Q psy9783 20 SKVLVVGA-GGIGCELLKNLVLSGFS------NIEIVDLD 52 (726)
Q Consensus 20 ~kVlvVGa-GgiGceiaknLal~Gv~------~i~iiD~D 52 (726)
.||+|+|| |.+|+.++..|+..|+- +|.++|..
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~ 42 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIP 42 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcC
Confidence 47999998 99999999999998874 79999864
No 321
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=76.61 E-value=3.4 Score=39.19 Aligned_cols=33 Identities=27% Similarity=0.451 Sum_probs=28.5
Q ss_pred CcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 20 SKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 20 ~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
+.|+|+| .||||-++++.|+..|-.++.+++.+
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~ 34 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRS 34 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESS
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeec
Confidence 3578887 89999999999999998888888754
No 322
>PRK05868 hypothetical protein; Validated
Probab=76.53 E-value=3.3 Score=45.75 Aligned_cols=32 Identities=28% Similarity=0.346 Sum_probs=29.2
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
.+|+|||+|-.|+.+|-.|++.|+. ++|+|..
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~-v~viE~~ 33 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYS-VTMVERH 33 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCC-EEEEcCC
Confidence 4799999999999999999999986 9999975
No 323
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=76.30 E-value=2.9 Score=45.57 Aligned_cols=32 Identities=28% Similarity=0.558 Sum_probs=28.6
Q ss_pred cEEEEcCchHHHHHHHHHHHhC-CCeEEEEeCCc
Q psy9783 21 KVLVVGAGGIGCELLKNLVLSG-FSNIEIVDLDT 53 (726)
Q Consensus 21 kVlvVGaGgiGceiaknLal~G-v~~i~iiD~D~ 53 (726)
.|+|||+|..|+.+|..|++.| + +++|+|...
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~-~v~v~E~~~ 33 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKI-KIALIEANS 33 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCc-eEEEEeCCC
Confidence 3899999999999999999999 8 489998764
No 324
>PRK07856 short chain dehydrogenase; Provisional
Probab=76.27 E-value=3.5 Score=42.21 Aligned_cols=36 Identities=22% Similarity=0.453 Sum_probs=30.1
Q ss_pred HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783 17 IKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLDT 53 (726)
Q Consensus 17 L~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D~ 53 (726)
+.+++++|.| .||||.++++.|+..|. ++.++|.+.
T Consensus 4 ~~~k~~lItGas~gIG~~la~~l~~~g~-~v~~~~r~~ 40 (252)
T PRK07856 4 LTGRVVLVTGGTRGIGAGIARAFLAAGA-TVVVCGRRA 40 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCh
Confidence 5678899998 68999999999999997 688887653
No 325
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=76.25 E-value=3 Score=45.83 Aligned_cols=31 Identities=32% Similarity=0.574 Sum_probs=27.9
Q ss_pred cEEEEcC-chHHHHHHHHHHHhCCC------eEEEEeC
Q psy9783 21 KVLVVGA-GGIGCELLKNLVLSGFS------NIEIVDL 51 (726)
Q Consensus 21 kVlvVGa-GgiGceiaknLal~Gv~------~i~iiD~ 51 (726)
||+|+|+ |.+|+.++-.|+..|+- .|.|+|-
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~ 38 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDI 38 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEec
Confidence 6999999 99999999999998885 4999985
No 326
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.11 E-value=3.2 Score=41.93 Aligned_cols=35 Identities=23% Similarity=0.455 Sum_probs=29.8
Q ss_pred HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 17 IKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 17 L~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
+.+++++|.| .|+||..+++.|+..|. ++.+++.+
T Consensus 5 ~~~~~vlVtG~sg~iG~~l~~~L~~~G~-~Vi~~~r~ 40 (239)
T PRK07666 5 LQGKNALITGAGRGIGRAVAIALAKEGV-NVGLLART 40 (239)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 4567899998 77999999999999997 78888754
No 327
>PRK07035 short chain dehydrogenase; Provisional
Probab=76.09 E-value=3.8 Score=41.82 Aligned_cols=35 Identities=26% Similarity=0.377 Sum_probs=30.0
Q ss_pred HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 17 IKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 17 L~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
|.+++|+|.| .|+||.++++.|+..|. ++.++|.+
T Consensus 6 l~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~ 41 (252)
T PRK07035 6 LTGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRK 41 (252)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 5678899998 88999999999999996 78888753
No 328
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=76.08 E-value=3.6 Score=45.05 Aligned_cols=34 Identities=29% Similarity=0.313 Sum_probs=31.0
Q ss_pred cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
.++|+|||.|-+|+|+|..|...|+.+++|++..
T Consensus 172 g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~ 205 (352)
T PRK12770 172 GKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRR 205 (352)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeec
Confidence 5799999999999999999999999989998754
No 329
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=76.03 E-value=3.2 Score=37.22 Aligned_cols=34 Identities=38% Similarity=0.784 Sum_probs=28.0
Q ss_pred cCcEEEEcCchHHHHHHH-HHHHhCCCeEEEEeCC
Q psy9783 19 KSKVLVVGAGGIGCELLK-NLVLSGFSNIEIVDLD 52 (726)
Q Consensus 19 ~~kVlvVGaGgiGceiak-nLal~Gv~~i~iiD~D 52 (726)
..+|+|||+|++|..++- .+...|++-..++|.|
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~ 37 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVD 37 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEEC
T ss_pred CCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcC
Confidence 568999999999998864 4557799988999855
No 330
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=76.02 E-value=4 Score=41.88 Aligned_cols=29 Identities=34% Similarity=0.463 Sum_probs=25.4
Q ss_pred cEEEEc-CchHHHHHHHHHHHhCCCeEEEEe
Q psy9783 21 KVLVVG-AGGIGCELLKNLVLSGFSNIEIVD 50 (726)
Q Consensus 21 kVlvVG-aGgiGceiaknLal~Gv~~i~iiD 50 (726)
||.||| +|.+|+.+++.|+..| .+++++|
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G-~~V~v~~ 31 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAG-NKIIIGS 31 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCC-CEEEEEE
Confidence 699997 8999999999999999 5677765
No 331
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=75.79 E-value=2.9 Score=51.02 Aligned_cols=40 Identities=33% Similarity=0.421 Sum_probs=35.9
Q ss_pred HHHhcCcEEEEcCchHHHHHHHHHHHhCCC--eEEEEeCCcc
Q psy9783 15 DLIKKSKVLVVGAGGIGCELLKNLVLSGFS--NIEIVDLDTI 54 (726)
Q Consensus 15 ~kL~~~kVlvVGaGgiGceiaknLal~Gv~--~i~iiD~D~I 54 (726)
.+|.+.||++.|+|+.|..+++.|...|++ +|.++|..-+
T Consensus 181 ~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~ 222 (752)
T PRK07232 181 KKIEDVKIVVSGAGAAAIACLNLLVALGAKKENIIVCDSKGV 222 (752)
T ss_pred CChhhcEEEEECccHHHHHHHHHHHHcCCCcccEEEEcCCCe
Confidence 467889999999999999999999999995 9999996644
No 332
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=75.74 E-value=3.1 Score=45.63 Aligned_cols=30 Identities=20% Similarity=0.519 Sum_probs=27.3
Q ss_pred EEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 22 VLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 22 VlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
|+|||+|..|+.+|..|++.|. +++|+|..
T Consensus 2 viIiGaG~AGl~~A~~la~~g~-~v~liE~~ 31 (388)
T TIGR01790 2 LAVIGGGPAGLAIALELARPGL-RVQLIEPH 31 (388)
T ss_pred EEEECCCHHHHHHHHHHHhCCC-eEEEEccC
Confidence 8999999999999999999997 68999864
No 333
>PRK08339 short chain dehydrogenase; Provisional
Probab=75.63 E-value=3.7 Score=42.79 Aligned_cols=35 Identities=14% Similarity=0.326 Sum_probs=28.9
Q ss_pred HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 17 IKKSKVLVVGA-GGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 17 L~~~kVlvVGa-GgiGceiaknLal~Gv~~i~iiD~D 52 (726)
|.++.++|.|+ ||||.++++.|+..|. ++.++|.+
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~ 41 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRN 41 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCC
Confidence 56678899985 7999999999999996 58787743
No 334
>PRK07024 short chain dehydrogenase; Provisional
Probab=75.60 E-value=4.1 Score=41.91 Aligned_cols=33 Identities=27% Similarity=0.472 Sum_probs=28.0
Q ss_pred cCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 19 KSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 19 ~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
.++|+|.| .||||.++++.|+..|. ++.++|.+
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~-~v~~~~r~ 35 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGA-TLGLVARR 35 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 35788887 89999999999999997 68888754
No 335
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=75.57 E-value=3.6 Score=45.42 Aligned_cols=32 Identities=41% Similarity=0.457 Sum_probs=29.5
Q ss_pred cEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 21 kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
+|+|+|+|.||.-.+..+.+.|.+.|.++|.+
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~ 202 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRS 202 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Confidence 79999999999988999999999999999854
No 336
>PRK07825 short chain dehydrogenase; Provisional
Probab=75.57 E-value=3.5 Score=42.76 Aligned_cols=34 Identities=32% Similarity=0.482 Sum_probs=27.8
Q ss_pred HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 17 IKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 17 L~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~ 51 (726)
|..++|+|.| .||||.++++.|+..|.. +.+++.
T Consensus 3 ~~~~~ilVtGasggiG~~la~~l~~~G~~-v~~~~r 37 (273)
T PRK07825 3 LRGKVVAITGGARGIGLATARALAALGAR-VAIGDL 37 (273)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEEC
Confidence 4567899998 599999999999999965 666654
No 337
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=75.44 E-value=3.6 Score=41.53 Aligned_cols=35 Identities=31% Similarity=0.491 Sum_probs=29.9
Q ss_pred HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 17 IKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 17 L~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
+.+++|+|.| .|++|.++++.|+..|. ++.+++.+
T Consensus 4 ~~~~~ilItGasg~iG~~l~~~l~~~g~-~V~~~~r~ 39 (251)
T PRK12826 4 LEGRVALVTGAARGIGRAIAVRLAADGA-EVIVVDIC 39 (251)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCC
Confidence 4677899998 79999999999999996 67887765
No 338
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=75.42 E-value=3.2 Score=47.12 Aligned_cols=36 Identities=22% Similarity=0.271 Sum_probs=30.7
Q ss_pred HHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 15 DLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 15 ~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~ 51 (726)
..|.+++|.|||.|.||..+|+.|...|. ++..+|.
T Consensus 147 ~~L~gktvGIiG~G~IG~~vA~~~~~fGm-~V~~~d~ 182 (409)
T PRK11790 147 FEVRGKTLGIVGYGHIGTQLSVLAESLGM-RVYFYDI 182 (409)
T ss_pred ccCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECC
Confidence 35899999999999999999999997776 5667673
No 339
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=75.40 E-value=4 Score=41.65 Aligned_cols=34 Identities=35% Similarity=0.576 Sum_probs=28.7
Q ss_pred HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 17 IKKSKVLVVGA-GGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 17 L~~~kVlvVGa-GgiGceiaknLal~Gv~~i~iiD~ 51 (726)
+.+++++|.|+ |+||..+++.|+..|. ++.+++.
T Consensus 5 ~~~~~vlItGasg~iG~~la~~l~~~G~-~v~~~~r 39 (262)
T PRK13394 5 LNGKTAVVTGAASGIGKEIALELARAGA-AVAIADL 39 (262)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeC
Confidence 55678999985 9999999999999997 5777764
No 340
>PLN02240 UDP-glucose 4-epimerase
Probab=75.39 E-value=3.4 Score=44.41 Aligned_cols=33 Identities=30% Similarity=0.668 Sum_probs=28.3
Q ss_pred HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEe
Q psy9783 17 IKKSKVLVVGA-GGIGCELLKNLVLSGFSNIEIVD 50 (726)
Q Consensus 17 L~~~kVlvVGa-GgiGceiaknLal~Gv~~i~iiD 50 (726)
|++++|+|.|+ |.||.++++.|+..|. +++++|
T Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~ 36 (352)
T PLN02240 3 LMGRTILVTGGAGYIGSHTVLQLLLAGY-KVVVID 36 (352)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEe
Confidence 45689999985 9999999999999995 688776
No 341
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=75.37 E-value=4.1 Score=46.07 Aligned_cols=33 Identities=39% Similarity=0.540 Sum_probs=29.3
Q ss_pred cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
..+|+|||+|.+|+|++..|...|. +++|++..
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g~-~Vtli~~~ 180 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERGL-HPTLIHRS 180 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC-cEEEEecc
Confidence 3689999999999999999999996 69999853
No 342
>PLN02306 hydroxypyruvate reductase
Probab=75.36 E-value=3 Score=47.02 Aligned_cols=35 Identities=37% Similarity=0.473 Sum_probs=28.7
Q ss_pred HHhcCcEEEEcCchHHHHHHHHHH-HhCCCeEEEEeC
Q psy9783 16 LIKKSKVLVVGAGGIGCELLKNLV-LSGFSNIEIVDL 51 (726)
Q Consensus 16 kL~~~kVlvVGaGgiGceiaknLa-l~Gv~~i~iiD~ 51 (726)
.|.+++|.|||.|.||.++++.|. -.|+ ++..+|.
T Consensus 162 ~L~gktvGIiG~G~IG~~vA~~l~~~fGm-~V~~~d~ 197 (386)
T PLN02306 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDL 197 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhcCCC-EEEEECC
Confidence 588999999999999999999985 4454 5666664
No 343
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=75.35 E-value=3.2 Score=41.79 Aligned_cols=32 Identities=28% Similarity=0.480 Sum_probs=26.5
Q ss_pred HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEE
Q psy9783 17 IKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIV 49 (726)
Q Consensus 17 L~~~kVlvVG-aGgiGceiaknLal~Gv~~i~ii 49 (726)
|..++++|+| .|+||.++++.|+..|.. +.++
T Consensus 3 ~~~~~ilI~Gasg~iG~~la~~l~~~g~~-v~~~ 35 (247)
T PRK05565 3 LMGKVAIVTGASGGIGRAIAELLAKEGAK-VVIA 35 (247)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEE
Confidence 5677899998 599999999999999975 4444
No 344
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=75.35 E-value=3.4 Score=48.87 Aligned_cols=40 Identities=25% Similarity=0.463 Sum_probs=35.0
Q ss_pred HHHhcCcEEEEcCchHHHHHHHHHHH-----hCC------CeEEEEeCCcc
Q psy9783 15 DLIKKSKVLVVGAGGIGCELLKNLVL-----SGF------SNIEIVDLDTI 54 (726)
Q Consensus 15 ~kL~~~kVlvVGaGgiGceiaknLal-----~Gv------~~i~iiD~D~I 54 (726)
.+|.+.||+++|||+.|.-+++.|+. .|+ .+|.++|.+-+
T Consensus 317 ~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GL 367 (581)
T PLN03129 317 GDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGL 367 (581)
T ss_pred CchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCe
Confidence 46888999999999999999999998 487 59999998754
No 345
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=75.32 E-value=5.4 Score=44.39 Aligned_cols=32 Identities=31% Similarity=0.576 Sum_probs=28.7
Q ss_pred cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~ 51 (726)
.++|+|||.|.+|+|+|..|...|. +++|++.
T Consensus 144 ~~~vvViGgG~ig~E~A~~l~~~g~-~Vtlv~~ 175 (396)
T PRK09754 144 ERSVVIVGAGTIGLELAASATQRRC-KVTVIEL 175 (396)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-eEEEEec
Confidence 4789999999999999999999997 5898875
No 346
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=75.31 E-value=3.1 Score=45.73 Aligned_cols=34 Identities=24% Similarity=0.373 Sum_probs=29.3
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCC-eEEEEeCCc
Q psy9783 20 SKVLVVGAGGIGCELLKNLVLSGFS-NIEIVDLDT 53 (726)
Q Consensus 20 ~kVlvVGaGgiGceiaknLal~Gv~-~i~iiD~D~ 53 (726)
..|+|||+|..|+.+|-.|++.|.+ +++|+|...
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~ 36 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAP 36 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCC
Confidence 3699999999999999999999754 689998753
No 347
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=75.25 E-value=11 Score=38.38 Aligned_cols=61 Identities=16% Similarity=0.111 Sum_probs=39.0
Q ss_pred HHHhhCCCCeEEEEecccccccccccccccccEEEEc--cCcHHHHHHHHHHhhhcCCcEEEEccCCccc
Q psy9783 166 SALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNA--LDNRAARNHVNRMCLASEVPLIESGTAGYEG 233 (726)
Q Consensus 166 ~~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~a--lDn~~aR~~in~~c~~~~iPlI~sg~~G~~G 233 (726)
.+.+..++++|+...+. .+-++++|+|+++ ++..++|..--+.+.++|+.-...-|.|.+|
T Consensus 51 ~~~~~~~~~~v~~ttd~-------~eAl~gADfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG 113 (183)
T PF02056_consen 51 MVEEAGADLKVEATTDR-------REALEGADFVINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGG 113 (183)
T ss_dssp HHHHCTTSSEEEEESSH-------HHHHTTESEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHH
T ss_pred HHHhcCCCeEEEEeCCH-------HHHhCCCCEEEEEeeecchHHHHHHHHHHHHhCCccccccccCccH
Confidence 34445556666554433 2447889999997 5678889888888888887654444444443
No 348
>PRK08703 short chain dehydrogenase; Provisional
Probab=75.23 E-value=3.8 Score=41.49 Aligned_cols=35 Identities=23% Similarity=0.461 Sum_probs=29.1
Q ss_pred HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 17 IKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 17 L~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
|.+++|+|.| .|+||.++++.|+..|. ++.+++.+
T Consensus 4 l~~k~vlItG~sggiG~~la~~l~~~g~-~V~~~~r~ 39 (239)
T PRK08703 4 LSDKTILVTGASQGLGEQVAKAYAAAGA-TVILVARH 39 (239)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCC
Confidence 4567899998 59999999999999997 57777643
No 349
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=75.20 E-value=3.3 Score=45.46 Aligned_cols=33 Identities=24% Similarity=0.584 Sum_probs=29.5
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783 20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDT 53 (726)
Q Consensus 20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~ 53 (726)
..|+|||+|..|+.+|-.|++.|+ +++|+|...
T Consensus 6 ~dViIvGgG~aGl~~A~~La~~G~-~V~liE~~~ 38 (391)
T PRK08020 6 TDIAIVGGGMVGAALALGLAQHGF-SVAVLEHAA 38 (391)
T ss_pred ccEEEECcCHHHHHHHHHHhcCCC-EEEEEcCCC
Confidence 579999999999999999999997 599999763
No 350
>PRK15076 alpha-galactosidase; Provisional
Probab=75.18 E-value=18 Score=41.46 Aligned_cols=45 Identities=13% Similarity=0.053 Sum_probs=28.9
Q ss_pred cccccccEEEEccCc--HHHHH-HHHHHhhhcCCcEEEEccCCccceE
Q psy9783 191 NYFKQFTLVMNALDN--RAARN-HVNRMCLASEVPLIESGTAGYEGQV 235 (726)
Q Consensus 191 ~~~~~~DlVi~alDn--~~aR~-~in~~c~~~~iPlI~sg~~G~~G~v 235 (726)
+-++++|+|+.+.-- .++++ .--++.++||+----..+.|.+|..
T Consensus 71 eal~dADfVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~ 118 (431)
T PRK15076 71 EALQGADYVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIM 118 (431)
T ss_pred HHhCCCCEEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchh
Confidence 346889999998765 45454 4457888888752112566666644
No 351
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=75.10 E-value=3.5 Score=43.97 Aligned_cols=31 Identities=26% Similarity=0.524 Sum_probs=27.0
Q ss_pred cEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 21 kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
+|.|||+|.+|+.++++|+..|+ +++++|.+
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~-~V~~~dr~ 31 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGY-QLHVTTIG 31 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCC-eEEEEcCC
Confidence 58999999999999999999996 57777654
No 352
>PRK06196 oxidoreductase; Provisional
Probab=75.08 E-value=3.8 Score=43.87 Aligned_cols=35 Identities=20% Similarity=0.398 Sum_probs=28.8
Q ss_pred HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 17 IKKSKVLVVGA-GGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 17 L~~~kVlvVGa-GgiGceiaknLal~Gv~~i~iiD~D 52 (726)
+.+++|+|.|+ ||||.++++.|+..|. ++.+++.+
T Consensus 24 l~~k~vlITGasggIG~~~a~~L~~~G~-~Vv~~~R~ 59 (315)
T PRK06196 24 LSGKTAIVTGGYSGLGLETTRALAQAGA-HVIVPARR 59 (315)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 46678999985 8999999999999996 57777643
No 353
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=75.06 E-value=4.4 Score=46.23 Aligned_cols=40 Identities=35% Similarity=0.463 Sum_probs=34.2
Q ss_pred HHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 12 DLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 12 ~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
++-..+..++|+|+|.|..|..+++.|...|. .+++.|.+
T Consensus 7 ~~~~~~~~~~i~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~ 46 (458)
T PRK01710 7 EFKKFIKNKKVAVVGIGVSNIPLIKFLVKLGA-KVTAFDKK 46 (458)
T ss_pred HHhhhhcCCeEEEEcccHHHHHHHHHHHHCCC-EEEEECCC
Confidence 34456778899999999999999999999996 68898854
No 354
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=75.02 E-value=4 Score=42.11 Aligned_cols=34 Identities=32% Similarity=0.612 Sum_probs=28.4
Q ss_pred HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 17 IKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 17 L~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~ 51 (726)
|.+++++|.| .||||.++++.|+..|. ++.++|.
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r 37 (262)
T TIGR03325 3 LKGEVVLVTGGASGLGRAIVDRFVAEGA-RVAVLDK 37 (262)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 4678899998 57999999999999996 5777764
No 355
>PRK08244 hypothetical protein; Provisional
Probab=75.02 E-value=3.5 Score=47.15 Aligned_cols=32 Identities=25% Similarity=0.510 Sum_probs=29.0
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
..|+|||+|..|..+|-.|++.|+. ++|+|..
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~-v~viEr~ 34 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVK-TCVIERL 34 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCc-EEEEecC
Confidence 5799999999999999999999985 8888864
No 356
>PRK06125 short chain dehydrogenase; Provisional
Probab=74.89 E-value=4.1 Score=41.89 Aligned_cols=35 Identities=29% Similarity=0.557 Sum_probs=30.1
Q ss_pred HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 17 IKKSKVLVVGA-GGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 17 L~~~kVlvVGa-GgiGceiaknLal~Gv~~i~iiD~D 52 (726)
|.+++++|.|+ ||||.++++.|+..|. ++.+++.+
T Consensus 5 ~~~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r~ 40 (259)
T PRK06125 5 LAGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVARD 40 (259)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCC
Confidence 56788999996 7999999999999998 78887754
No 357
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=74.88 E-value=11 Score=41.55 Aligned_cols=34 Identities=9% Similarity=0.220 Sum_probs=26.9
Q ss_pred cccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEc
Q psy9783 193 FKQFTLVMNALDNRAARNHVNRMCLASEVPLIESG 227 (726)
Q Consensus 193 ~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg 227 (726)
+.++|+||.|+....++.+..++ .+.+..+|+..
T Consensus 61 ~~~vDvVf~A~g~g~s~~~~~~~-~~~G~~VIDlS 94 (334)
T PRK14874 61 FSGVDIALFSAGGSVSKKYAPKA-AAAGAVVIDNS 94 (334)
T ss_pred HcCCCEEEECCChHHHHHHHHHH-HhCCCEEEECC
Confidence 36899999999999999888775 45677777644
No 358
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=74.85 E-value=25 Score=40.24 Aligned_cols=57 Identities=16% Similarity=0.118 Sum_probs=40.2
Q ss_pred hCCCCeEEEEecccccccccccccccccEEEEc--cCcHHHHHHHHHHhhhcCCcEEEEccCCccceE
Q psy9783 170 FNPDANIVAHHTSIISADFGVNYFKQFTLVMNA--LDNRAARNHVNRMCLASEVPLIESGTAGYEGQV 235 (726)
Q Consensus 170 ~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~a--lDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v 235 (726)
..++++|++..+. .+-++++|+||++ ++..++|..--+.+++||+-= ..|.|.+|..
T Consensus 56 ~g~~~~v~~ttD~-------~~Al~gADfVi~~irvGg~~~r~~De~Iplk~G~~g--qeT~G~GG~~ 114 (425)
T cd05197 56 VGADIKFEKTMDL-------EDAIIDADFVINQFRVGGLTYREKDEQIPLKYGVIG--QETVGPGGTF 114 (425)
T ss_pred hCCCeEEEEeCCH-------HHHhCCCCEEEEeeecCChHHHHHHHhHHHHcCccc--ccccCcchhh
Confidence 3445555554433 2447889999997 567889999899999998644 5677777754
No 359
>PRK06172 short chain dehydrogenase; Provisional
Probab=74.80 E-value=4.1 Score=41.59 Aligned_cols=35 Identities=29% Similarity=0.404 Sum_probs=29.1
Q ss_pred HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 17 IKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 17 L~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
|.+++|+|.| .|+||.++++.|+..|. ++.+++.+
T Consensus 5 l~~k~ilItGas~~iG~~ia~~l~~~G~-~v~~~~r~ 40 (253)
T PRK06172 5 FSGKVALVTGGAAGIGRATALAFAREGA-KVVVADRD 40 (253)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCC
Confidence 4578999998 58999999999999995 57777643
No 360
>PRK06545 prephenate dehydrogenase; Validated
Probab=74.68 E-value=3.5 Score=45.72 Aligned_cols=32 Identities=34% Similarity=0.498 Sum_probs=27.6
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
.+|.|||+|.+|..+++.|...|. .+.++|.|
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~-~v~i~~~~ 32 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGP-DVFIIGYD 32 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCC-CeEEEEeC
Confidence 379999999999999999999997 56777754
No 361
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=74.62 E-value=3.7 Score=45.45 Aligned_cols=31 Identities=23% Similarity=0.411 Sum_probs=28.0
Q ss_pred cEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 21 kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
.|+|||+|..|+..|..|++.|+. +.|+|..
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~~-V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGIE-TILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCc-EEEEECC
Confidence 589999999999999999999975 8888875
No 362
>PRK12861 malic enzyme; Reviewed
Probab=74.61 E-value=3 Score=50.93 Aligned_cols=40 Identities=35% Similarity=0.473 Sum_probs=36.1
Q ss_pred HHHhcCcEEEEcCchHHHHHHHHHHHhCCC--eEEEEeCCcc
Q psy9783 15 DLIKKSKVLVVGAGGIGCELLKNLVLSGFS--NIEIVDLDTI 54 (726)
Q Consensus 15 ~kL~~~kVlvVGaGgiGceiaknLal~Gv~--~i~iiD~D~I 54 (726)
.+|.+.||++.|||+.|..+++.|...|++ +|.++|..-+
T Consensus 185 k~l~d~~iv~~GAGaAg~~ia~~l~~~G~~~~~i~~~D~~Gl 226 (764)
T PRK12861 185 KSIKEVKVVTSGAGAAALACLDLLVDLGLPVENIWVTDIEGV 226 (764)
T ss_pred CChhHcEEEEECHhHHHHHHHHHHHHcCCChhhEEEEcCCCe
Confidence 467889999999999999999999999997 8999997654
No 363
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=74.60 E-value=4 Score=41.29 Aligned_cols=35 Identities=29% Similarity=0.609 Sum_probs=28.6
Q ss_pred HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 17 IKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 17 L~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
|.+++++|.| .|+||.++++.|+..|. ++.++|.+
T Consensus 1 ~~~~~ilItGas~~iG~~la~~l~~~g~-~v~~~~r~ 36 (250)
T TIGR03206 1 LKDKTAIVTGGGGGIGGATCRRFAEEGA-KVAVFDLN 36 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecCC
Confidence 4578899998 68999999999999986 57776643
No 364
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=74.59 E-value=14 Score=41.06 Aligned_cols=34 Identities=15% Similarity=0.149 Sum_probs=27.9
Q ss_pred cccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEc
Q psy9783 193 FKQFTLVMNALDNRAARNHVNRMCLASEVPLIESG 227 (726)
Q Consensus 193 ~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg 227 (726)
|.++|+|+.|+.+-.++.+..++ .+.++++|+..
T Consensus 64 ~~~~Dvvf~a~p~~~s~~~~~~~-~~~g~~VIDlS 97 (336)
T PRK08040 64 WSQAQLAFFVAGREASAAYAEEA-TNAGCLVIDSS 97 (336)
T ss_pred ccCCCEEEECCCHHHHHHHHHHH-HHCCCEEEECC
Confidence 47899999999998888887776 55789999755
No 365
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=74.51 E-value=4 Score=46.01 Aligned_cols=33 Identities=21% Similarity=0.392 Sum_probs=29.4
Q ss_pred cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
..+|+|||+|.+|+|+|..|+..|. ++++++..
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~-~Vtli~~~ 189 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGS-KVTVLDAA 189 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Confidence 5789999999999999999999996 58888764
No 366
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=74.39 E-value=4.4 Score=45.79 Aligned_cols=33 Identities=27% Similarity=0.311 Sum_probs=28.1
Q ss_pred CcEEEEcC-chHHHHHHHHHHHhCCCe------EEEEeCC
Q psy9783 20 SKVLVVGA-GGIGCELLKNLVLSGFSN------IEIVDLD 52 (726)
Q Consensus 20 ~kVlvVGa-GgiGceiaknLal~Gv~~------i~iiD~D 52 (726)
.||.|||+ |.+|+.+|-.|+..|+-. |+|+|.|
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD 84 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSE 84 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccC
Confidence 48999999 999999999999999853 6667654
No 367
>PRK14727 putative mercuric reductase; Provisional
Probab=74.39 E-value=4.2 Score=46.59 Aligned_cols=33 Identities=15% Similarity=0.301 Sum_probs=29.2
Q ss_pred cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
..+|+|||.|.+|+|++..|...|. +++|+..+
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G~-~Vtlv~~~ 220 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLGS-RVTILARS 220 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-EEEEEEcC
Confidence 4789999999999999999999996 68988754
No 368
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=74.32 E-value=13 Score=39.58 Aligned_cols=36 Identities=14% Similarity=0.207 Sum_probs=29.0
Q ss_pred ccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCc
Q psy9783 194 KQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGY 231 (726)
Q Consensus 194 ~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~ 231 (726)
..+|+||+++ ...+-..+-..|.++++|+|..-+ |+
T Consensus 67 ~~~DvVIdfT-~p~~~~~~~~~al~~g~~vVigtt-g~ 102 (266)
T TIGR00036 67 TDPDVLIDFT-TPEGVLNHLKFALEHGVRLVVGTT-GF 102 (266)
T ss_pred CCCCEEEECC-ChHHHHHHHHHHHHCCCCEEEECC-CC
Confidence 4579999999 667777788899999999997665 54
No 369
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=74.29 E-value=4.4 Score=43.36 Aligned_cols=34 Identities=26% Similarity=0.232 Sum_probs=28.7
Q ss_pred hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 18 KKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 18 ~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~ 51 (726)
...+|+|+|+|++|...+..+..+|+..+.++|.
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~ 177 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWET 177 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Confidence 4568999999999998888777889988877763
No 370
>KOG1371|consensus
Probab=74.23 E-value=8.4 Score=42.66 Aligned_cols=37 Identities=46% Similarity=0.742 Sum_probs=30.9
Q ss_pred CcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCC
Q psy9783 20 SKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFL 64 (726)
Q Consensus 20 ~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfL 64 (726)
.+|||.| +|=||++.+-.|...|.+ +.++| ||+|-.+
T Consensus 3 ~~VLVtGgaGyiGsht~l~L~~~gy~-v~~vD-------Nl~n~~~ 40 (343)
T KOG1371|consen 3 KHVLVTGGAGYIGSHTVLALLKRGYG-VVIVD-------NLNNSYL 40 (343)
T ss_pred cEEEEecCCcceehHHHHHHHhCCCc-EEEEe-------cccccch
Confidence 5789986 999999999999999966 66666 8888763
No 371
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=74.21 E-value=5.1 Score=44.88 Aligned_cols=34 Identities=29% Similarity=0.519 Sum_probs=29.6
Q ss_pred hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 18 KKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 18 ~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
..++|+|||.|.+|+|+|..|...|. ++++++..
T Consensus 136 ~~~~vvViGgG~~g~e~A~~l~~~g~-~Vtli~~~ 169 (427)
T TIGR03385 136 KVENVVIIGGGYIGIEMAEALRERGK-NVTLIHRS 169 (427)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCC-cEEEEECC
Confidence 35799999999999999999999986 58888754
No 372
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=74.20 E-value=3.5 Score=45.46 Aligned_cols=32 Identities=19% Similarity=0.373 Sum_probs=29.1
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
.+|+|||+|-.|..+|-.|++.|+ +++|+|..
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~-~v~l~E~~ 35 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGR-SVAVIEGG 35 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCC-cEEEEcCC
Confidence 579999999999999999999996 68999965
No 373
>PRK07814 short chain dehydrogenase; Provisional
Probab=74.19 E-value=4.4 Score=41.95 Aligned_cols=35 Identities=17% Similarity=0.365 Sum_probs=29.7
Q ss_pred HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 17 IKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 17 L~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
+.+++++|.| .||||.++++.|+..|. ++.++|.+
T Consensus 8 ~~~~~vlItGasggIG~~~a~~l~~~G~-~Vi~~~r~ 43 (263)
T PRK07814 8 LDDQVAVVTGAGRGLGAAIALAFAEAGA-DVLIAART 43 (263)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 5678899998 56899999999999997 78888754
No 374
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=74.18 E-value=4 Score=46.61 Aligned_cols=32 Identities=31% Similarity=0.448 Sum_probs=29.0
Q ss_pred cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~ 51 (726)
.++|+|||+|.+|+|++..|.+.|. +++|++.
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~-~Vtlie~ 205 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGA-QVTVVEY 205 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-eEEEEeC
Confidence 5799999999999999999999996 6889874
No 375
>PRK09186 flagellin modification protein A; Provisional
Probab=74.11 E-value=4.3 Score=41.36 Aligned_cols=33 Identities=30% Similarity=0.505 Sum_probs=27.1
Q ss_pred HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEe
Q psy9783 17 IKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVD 50 (726)
Q Consensus 17 L~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD 50 (726)
+.+++|+|.| .|+||.++++.|+..|. ++.+++
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~-~v~~~~ 35 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGG-IVIAAD 35 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEe
Confidence 3567899998 58999999999999996 466664
No 376
>PRK07478 short chain dehydrogenase; Provisional
Probab=74.10 E-value=4.3 Score=41.50 Aligned_cols=34 Identities=18% Similarity=0.310 Sum_probs=28.4
Q ss_pred HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 17 IKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 17 L~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~ 51 (726)
+.+++++|.| .||||.++++.|+..|. ++.+++.
T Consensus 4 ~~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r 38 (254)
T PRK07478 4 LNGKVAIITGASSGIGRAAAKLFAREGA-KVVVGAR 38 (254)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 4567899998 58999999999999997 5777764
No 377
>PRK13529 malate dehydrogenase; Provisional
Probab=74.04 E-value=3.8 Score=48.25 Aligned_cols=40 Identities=23% Similarity=0.593 Sum_probs=35.2
Q ss_pred HHHhcCcEEEEcCchHHHHHHHHHHH----hCC------CeEEEEeCCcc
Q psy9783 15 DLIKKSKVLVVGAGGIGCELLKNLVL----SGF------SNIEIVDLDTI 54 (726)
Q Consensus 15 ~kL~~~kVlvVGaGgiGceiaknLal----~Gv------~~i~iiD~D~I 54 (726)
.+|.+.||+++|||+.|.-+++.|+. .|+ .+|.++|..-+
T Consensus 291 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GL 340 (563)
T PRK13529 291 EPLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGL 340 (563)
T ss_pred CChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCe
Confidence 46788999999999999999999997 599 49999997754
No 378
>PRK12742 oxidoreductase; Provisional
Probab=74.02 E-value=3.9 Score=41.10 Aligned_cols=32 Identities=31% Similarity=0.648 Sum_probs=26.7
Q ss_pred HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEE
Q psy9783 17 IKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIV 49 (726)
Q Consensus 17 L~~~kVlvVG-aGgiGceiaknLal~Gv~~i~ii 49 (726)
|.+++|+|.| .||||.++++.|+..|.. +.++
T Consensus 4 ~~~k~vlItGasggIG~~~a~~l~~~G~~-v~~~ 36 (237)
T PRK12742 4 FTGKKVLVLGGSRGIGAAIVRRFVTDGAN-VRFT 36 (237)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEe
Confidence 5678999999 589999999999999974 5554
No 379
>PRK08013 oxidoreductase; Provisional
Probab=73.97 E-value=3.6 Score=45.70 Aligned_cols=34 Identities=21% Similarity=0.414 Sum_probs=30.2
Q ss_pred cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783 19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDT 53 (726)
Q Consensus 19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~ 53 (726)
+..|+|||+|..|+.+|-.|++.|+. ++|+|...
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~-v~viE~~~ 36 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLR-VAVLEQRV 36 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCE-EEEEeCCC
Confidence 45899999999999999999999975 89999765
No 380
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=73.89 E-value=4 Score=42.97 Aligned_cols=35 Identities=17% Similarity=0.282 Sum_probs=29.0
Q ss_pred HHHhcCcEEEEcC---chHHHHHHHHHHHhCCCeEEEEe
Q psy9783 15 DLIKKSKVLVVGA---GGIGCELLKNLVLSGFSNIEIVD 50 (726)
Q Consensus 15 ~kL~~~kVlvVGa---GgiGceiaknLal~Gv~~i~iiD 50 (726)
.+|.++.++|.|+ +|||-++++.|+..|. ++.+++
T Consensus 6 ~~~~~k~~lItGas~~~GIG~aia~~la~~G~-~V~l~~ 43 (272)
T PRK08159 6 GLMAGKRGLILGVANNRSIAWGIAKACRAAGA-ELAFTY 43 (272)
T ss_pred ccccCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEc
Confidence 3566788999998 5999999999999997 566664
No 381
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=73.88 E-value=3.4 Score=45.25 Aligned_cols=34 Identities=24% Similarity=0.443 Sum_probs=30.2
Q ss_pred hcCcEEEEcCchHHHHHHHHHHHh---CCCeEEEEeCC
Q psy9783 18 KKSKVLVVGAGGIGCELLKNLVLS---GFSNIEIVDLD 52 (726)
Q Consensus 18 ~~~kVlvVGaGgiGceiaknLal~---Gv~~i~iiD~D 52 (726)
....|+|||+|..|+.+|-.|++. |+. ++|+|.+
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~-v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLP-VALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCE-EEEEeCC
Confidence 456899999999999999999998 975 9999975
No 382
>PRK07045 putative monooxygenase; Reviewed
Probab=73.88 E-value=4.1 Score=44.80 Aligned_cols=33 Identities=27% Similarity=0.413 Sum_probs=29.7
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783 20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDT 53 (726)
Q Consensus 20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~ 53 (726)
.+|+|||+|..|+.+|-.|++.|+ +++|++...
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~~G~-~v~v~E~~~ 38 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGARGH-SVTVVERAA 38 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCC-cEEEEeCCC
Confidence 479999999999999999999998 589998664
No 383
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=73.73 E-value=3.9 Score=45.27 Aligned_cols=44 Identities=23% Similarity=0.335 Sum_probs=36.5
Q ss_pred EeeecchhhhhhhhchhhhhhccccC--cchhhhHHHHHHhhCCCC
Q psy9783 131 IVAHHTSIIRFLHLNRQFLFHKQHVG--KSKAQVARNSALNFNPDA 174 (726)
Q Consensus 131 i~~~~~~~~~~~~l~~q~l~~~~hvg--~sk~~~ak~~~~~~np~~ 174 (726)
|...-...++..|||||++|...++| .+|+.++++.+.++||++
T Consensus 51 i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v 96 (339)
T PRK07688 51 VTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDV 96 (339)
T ss_pred EEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCc
Confidence 34444466788999999999999995 599999999999999864
No 384
>PRK14694 putative mercuric reductase; Provisional
Probab=73.68 E-value=4.6 Score=46.11 Aligned_cols=33 Identities=21% Similarity=0.387 Sum_probs=29.6
Q ss_pred cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
..+|+|||.|.+|+|++..|...|. ++++++.+
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~-~Vtlv~~~ 210 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGS-RVTVLARS 210 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-eEEEEECC
Confidence 5799999999999999999999996 68888765
No 385
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=73.62 E-value=3.9 Score=47.06 Aligned_cols=36 Identities=25% Similarity=0.431 Sum_probs=31.4
Q ss_pred HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
.+..++|+|||||..|-..|+.|.+.|+ +++|++..
T Consensus 7 ~~~~~~VaIIGAG~aGL~aA~~l~~~G~-~v~vfE~~ 42 (461)
T PLN02172 7 PINSQHVAVIGAGAAGLVAARELRREGH-TVVVFERE 42 (461)
T ss_pred CCCCCCEEEECCcHHHHHHHHHHHhcCC-eEEEEecC
Confidence 4567899999999999999999999997 68888753
No 386
>PRK05876 short chain dehydrogenase; Provisional
Probab=73.61 E-value=4.5 Score=42.58 Aligned_cols=35 Identities=23% Similarity=0.378 Sum_probs=28.8
Q ss_pred HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 17 IKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 17 L~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
+.++.++|.| .||||.++++.|+..|. ++.++|.+
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~-~Vv~~~r~ 39 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGA-RVVLGDVD 39 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 4567788887 88999999999999997 47777643
No 387
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=73.60 E-value=4.2 Score=46.28 Aligned_cols=34 Identities=26% Similarity=0.428 Sum_probs=30.4
Q ss_pred hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 18 KKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 18 ~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
...+|+|||+|..|.+.|..|++.|. +++|+|..
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~-~V~vie~~ 165 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGH-SVTVFEAL 165 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCC-cEEEEecC
Confidence 45789999999999999999999997 59999964
No 388
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=73.59 E-value=4.2 Score=42.93 Aligned_cols=34 Identities=24% Similarity=0.277 Sum_probs=27.9
Q ss_pred hcCcEEEEcCchHHHHHHHHHHHhCC---CeEEEEeC
Q psy9783 18 KKSKVLVVGAGGIGCELLKNLVLSGF---SNIEIVDL 51 (726)
Q Consensus 18 ~~~kVlvVGaGgiGceiaknLal~Gv---~~i~iiD~ 51 (726)
.+.||.+||+|-+|+.+++.|...|. .++.++|.
T Consensus 2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~ 38 (260)
T PTZ00431 2 ENIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTP 38 (260)
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECC
Confidence 45789999999999999999999984 24666654
No 389
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=73.58 E-value=5.6 Score=47.26 Aligned_cols=34 Identities=26% Similarity=0.477 Sum_probs=30.6
Q ss_pred cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783 19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDT 53 (726)
Q Consensus 19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~ 53 (726)
+.+|+|+|+|.+|..+++.|...|+ .+++||.|.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~ 433 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKM-RITVLERDI 433 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCC-CEEEEECCH
Confidence 4689999999999999999999997 589999874
No 390
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=73.48 E-value=3.8 Score=45.09 Aligned_cols=32 Identities=16% Similarity=0.306 Sum_probs=29.0
Q ss_pred cEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783 21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDT 53 (726)
Q Consensus 21 kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~ 53 (726)
.|+|||+|..|..+|-.|++.|+ +++|+|...
T Consensus 3 dV~IvGgG~~Gl~~A~~L~~~G~-~v~l~E~~~ 34 (374)
T PRK06617 3 NTVILGCGLSGMLTALSFAQKGI-KTTIFESKS 34 (374)
T ss_pred cEEEECCCHHHHHHHHHHHcCCC-eEEEecCCC
Confidence 69999999999999999999998 589999764
No 391
>KOG1298|consensus
Probab=73.46 E-value=4 Score=46.17 Aligned_cols=43 Identities=26% Similarity=0.480 Sum_probs=37.3
Q ss_pred cEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCC
Q psy9783 21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFL 64 (726)
Q Consensus 21 kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfL 64 (726)
-|+|||||-+||.++-.|++-| +++++|..|-=|+.-+---++
T Consensus 47 DvIIVGAGV~GsaLa~~L~kdG-RrVhVIERDl~EPdRivGEll 89 (509)
T KOG1298|consen 47 DVIIVGAGVAGSALAYALAKDG-RRVHVIERDLSEPDRIVGELL 89 (509)
T ss_pred cEEEECCcchHHHHHHHHhhCC-cEEEEEecccccchHHHHHhc
Confidence 4999999999999999999999 889999999888776655554
No 392
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=73.45 E-value=4.5 Score=41.36 Aligned_cols=34 Identities=35% Similarity=0.515 Sum_probs=28.1
Q ss_pred HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 17 IKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 17 L~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~ 51 (726)
|.+++++|.| .||||.++++.|+..|. ++.++|.
T Consensus 7 l~~k~~lItGas~giG~~ia~~L~~~G~-~vvl~~r 41 (254)
T PRK08085 7 LAGKNILITGSAQGIGFLLATGLAEYGA-EIIINDI 41 (254)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCC-EEEEEcC
Confidence 5677899998 68999999999999996 5666653
No 393
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=73.45 E-value=4 Score=47.81 Aligned_cols=34 Identities=24% Similarity=0.365 Sum_probs=30.5
Q ss_pred hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 18 KKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 18 ~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
...+|+|||+|.+|-..|..|++.|. +++|+|..
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~-~V~v~e~~ 169 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGH-AVTIFEAG 169 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecC
Confidence 46799999999999999999999998 59999854
No 394
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=73.45 E-value=5.9 Score=33.46 Aligned_cols=28 Identities=21% Similarity=0.463 Sum_probs=24.7
Q ss_pred EEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 24 VVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 24 vVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
|||+|.-|...|..|.+.|. +++|+|..
T Consensus 1 IiGaG~sGl~aA~~L~~~g~-~v~v~E~~ 28 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGY-RVTVFEKN 28 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTS-EEEEEESS
T ss_pred CEeeCHHHHHHHHHHHHCCC-cEEEEecC
Confidence 79999999999999999998 89999854
No 395
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=73.44 E-value=4.5 Score=44.23 Aligned_cols=33 Identities=27% Similarity=0.417 Sum_probs=29.7
Q ss_pred cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
..+|+|||+|..|++.|..|++.|. +++++|.+
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~~g~-~v~lie~~ 50 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLACLGY-EVHVYDKL 50 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCC-cEEEEeCC
Confidence 4689999999999999999999996 68999875
No 396
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=73.40 E-value=3.8 Score=42.09 Aligned_cols=35 Identities=31% Similarity=0.490 Sum_probs=29.2
Q ss_pred HhcCcEEEEcCc---hHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 17 IKKSKVLVVGAG---GIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 17 L~~~kVlvVGaG---giGceiaknLal~Gv~~i~iiD~D 52 (726)
|+.++|+|.|++ |||.++++.|+..|. ++.+++..
T Consensus 3 l~~k~vlItGas~~~giG~~la~~l~~~G~-~vi~~~r~ 40 (256)
T PRK12748 3 LMKKIALVTGASRLNGIGAAVCRRLAAKGI-DIFFTYWS 40 (256)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHcCC-cEEEEcCC
Confidence 456789999984 799999999999996 68887653
No 397
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=73.36 E-value=4.4 Score=43.16 Aligned_cols=32 Identities=31% Similarity=0.522 Sum_probs=27.4
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
.+|.|||+|.+|..++++|+..|+ .+.++|.+
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~-~v~~~d~~ 34 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGY-SLVVYDRN 34 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCC-eEEEEcCC
Confidence 479999999999999999999996 46777654
No 398
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=73.35 E-value=4 Score=47.44 Aligned_cols=35 Identities=34% Similarity=0.568 Sum_probs=30.5
Q ss_pred hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783 18 KKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDT 53 (726)
Q Consensus 18 ~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~ 53 (726)
....|+|||+|..|..+|-.|++.|+. ++|+|...
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~-v~viE~~~ 56 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVP-VVLLDDDD 56 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCc-EEEEeCCC
Confidence 345899999999999999999999985 88888654
No 399
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=73.33 E-value=4 Score=44.83 Aligned_cols=34 Identities=26% Similarity=0.352 Sum_probs=27.3
Q ss_pred HHhcCcEEEEcCchHHHHHHHHHHHhCCC-eEEEEe
Q psy9783 16 LIKKSKVLVVGAGGIGCELLKNLVLSGFS-NIEIVD 50 (726)
Q Consensus 16 kL~~~kVlvVGaGgiGceiaknLal~Gv~-~i~iiD 50 (726)
.|..++|.|||.|.||.++++.|. .||| ++...|
T Consensus 142 ~L~gktvGIiG~G~IG~~va~~l~-~~fgm~V~~~~ 176 (323)
T PRK15409 142 DVHHKTLGIVGMGRIGMALAQRAH-FGFNMPILYNA 176 (323)
T ss_pred CCCCCEEEEEcccHHHHHHHHHHH-hcCCCEEEEEC
Confidence 588999999999999999999986 4565 344444
No 400
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=73.32 E-value=4.5 Score=41.96 Aligned_cols=36 Identities=19% Similarity=0.276 Sum_probs=29.6
Q ss_pred HHhcCcEEEEcCc---hHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 16 LIKKSKVLVVGAG---GIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 16 kL~~~kVlvVGaG---giGceiaknLal~Gv~~i~iiD~D 52 (726)
.+.++.++|.|++ |||.++++.|+..|. ++.++|.+
T Consensus 7 ~~~~k~~lItGas~g~GIG~a~a~~la~~G~-~v~l~~r~ 45 (258)
T PRK07533 7 PLAGKRGLVVGIANEQSIAWGCARAFRALGA-ELAVTYLN 45 (258)
T ss_pred ccCCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCC
Confidence 3567889999975 899999999999996 57777653
No 401
>PRK06398 aldose dehydrogenase; Validated
Probab=73.21 E-value=4.7 Score=41.71 Aligned_cols=36 Identities=28% Similarity=0.463 Sum_probs=30.1
Q ss_pred HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783 17 IKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLDT 53 (726)
Q Consensus 17 L~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D~ 53 (726)
|++++++|.| .||||.++++.|+..|. ++.+++.+.
T Consensus 4 l~gk~vlItGas~gIG~~ia~~l~~~G~-~Vi~~~r~~ 40 (258)
T PRK06398 4 LKDKVAIVTGGSQGIGKAVVNRLKEEGS-NVINFDIKE 40 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCc
Confidence 5678899998 67999999999999996 677777553
No 402
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=73.20 E-value=4.9 Score=41.11 Aligned_cols=35 Identities=26% Similarity=0.436 Sum_probs=30.3
Q ss_pred HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 17 IKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 17 L~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
+.+++|+|.| .|+||..+++.|+..|. ++.+++.+
T Consensus 9 ~~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~ 44 (256)
T PRK06124 9 LAGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRN 44 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCC
Confidence 5678899998 68999999999999997 68888765
No 403
>PRK06475 salicylate hydroxylase; Provisional
Probab=73.10 E-value=4.4 Score=44.99 Aligned_cols=33 Identities=24% Similarity=0.468 Sum_probs=29.6
Q ss_pred cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
+.+|+|||+|-.|..+|-.|++.|+. ++|++..
T Consensus 2 ~~~V~IvGgGiaGl~~A~~L~~~G~~-V~i~E~~ 34 (400)
T PRK06475 2 RGSPLIAGAGVAGLSAALELAARGWA-VTIIEKA 34 (400)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCc-EEEEecC
Confidence 47899999999999999999999985 8888864
No 404
>PRK05993 short chain dehydrogenase; Provisional
Probab=73.08 E-value=5.1 Score=41.92 Aligned_cols=33 Identities=24% Similarity=0.409 Sum_probs=27.5
Q ss_pred cCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 19 KSKVLVVGA-GGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 19 ~~kVlvVGa-GgiGceiaknLal~Gv~~i~iiD~D 52 (726)
+++|+|.|+ ||||.++++.|+..|. ++.+++.+
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G~-~Vi~~~r~ 37 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDGW-RVFATCRK 37 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence 457999996 9999999999999996 57777654
No 405
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=73.04 E-value=3.9 Score=47.81 Aligned_cols=35 Identities=23% Similarity=0.316 Sum_probs=30.6
Q ss_pred HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~ 51 (726)
.|.+++|.|||+|.||..+++.|...|. ++..+|.
T Consensus 137 ~l~gktvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~ 171 (526)
T PRK13581 137 ELYGKTLGIIGLGRIGSEVAKRAKAFGM-KVIAYDP 171 (526)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECC
Confidence 5889999999999999999999998887 5777664
No 406
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=73.03 E-value=5.1 Score=48.26 Aligned_cols=32 Identities=22% Similarity=0.322 Sum_probs=29.0
Q ss_pred cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~ 51 (726)
..+|+|||.|.+|+|++..|+..|. +++||+.
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~-eVTLIe~ 343 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGS-EVVSFEY 343 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCC-eEEEEec
Confidence 3689999999999999999999995 6999985
No 407
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=73.01 E-value=4.7 Score=44.64 Aligned_cols=34 Identities=26% Similarity=0.450 Sum_probs=30.2
Q ss_pred cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783 19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDT 53 (726)
Q Consensus 19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~ 53 (726)
..+|+|||+|..|+.+|-.|++.|+. ++|+|...
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~-v~v~E~~~ 35 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGID-SVVLERRS 35 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCC-EEEEEcCC
Confidence 46799999999999999999999986 78888665
No 408
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=72.95 E-value=5 Score=40.36 Aligned_cols=34 Identities=24% Similarity=0.367 Sum_probs=28.4
Q ss_pred HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 17 IKKSKVLVVGA-GGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 17 L~~~kVlvVGa-GgiGceiaknLal~Gv~~i~iiD~ 51 (726)
|++++|+|.|+ |+||..+++.|+..|. ++.+++.
T Consensus 3 ~~~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r 37 (238)
T PRK05786 3 LKGKKVAIIGVSEGLGYAVAYFALKEGA-QVCINSR 37 (238)
T ss_pred cCCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 46789999985 8899999999999997 5777654
No 409
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=72.80 E-value=4.5 Score=41.46 Aligned_cols=34 Identities=24% Similarity=0.445 Sum_probs=28.5
Q ss_pred HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEe
Q psy9783 16 LIKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVD 50 (726)
Q Consensus 16 kL~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD 50 (726)
+|.+++|+|+| .|+||.++++.|+..|.. +.++|
T Consensus 8 ~l~~k~vlVtG~s~gIG~~la~~l~~~G~~-vv~~~ 42 (255)
T PRK06113 8 RLDGKCAIITGAGAGIGKEIAITFATAGAS-VVVSD 42 (255)
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHCCCe-EEEEe
Confidence 36788999998 789999999999999964 66655
No 410
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=72.72 E-value=4.1 Score=44.90 Aligned_cols=35 Identities=26% Similarity=0.299 Sum_probs=29.9
Q ss_pred HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~ 51 (726)
.|..++|.|||+|.||..+++.|...|+. +...|.
T Consensus 139 el~gkTvGIiG~G~IG~~va~~l~afgm~-v~~~d~ 173 (324)
T COG0111 139 ELAGKTVGIIGLGRIGRAVAKRLKAFGMK-VIGYDP 173 (324)
T ss_pred cccCCEEEEECCCHHHHHHHHHHHhCCCe-EEEECC
Confidence 57799999999999999999999999976 555553
No 411
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=72.61 E-value=5.1 Score=40.69 Aligned_cols=34 Identities=41% Similarity=0.589 Sum_probs=28.0
Q ss_pred HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 17 IKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 17 L~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~ 51 (726)
+.+++|+|.| .|+||.++++.|+..|. ++.+++.
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g~-~v~~~~r 36 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEGA-KVVIADL 36 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeC
Confidence 4567899998 69999999999999986 5666653
No 412
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=72.58 E-value=4.3 Score=47.78 Aligned_cols=40 Identities=18% Similarity=0.298 Sum_probs=35.0
Q ss_pred HHHhcCcEEEEcCchHHHHHHHHHHH----hCC------CeEEEEeCCcc
Q psy9783 15 DLIKKSKVLVVGAGGIGCELLKNLVL----SGF------SNIEIVDLDTI 54 (726)
Q Consensus 15 ~kL~~~kVlvVGaGgiGceiaknLal----~Gv------~~i~iiD~D~I 54 (726)
.+|.+.||+++|||+.|.-+++.|+. .|+ .+|.++|..-+
T Consensus 293 ~~l~d~riv~~GAGsAgiGia~ll~~~m~~~Gls~eeA~~~i~~vD~~GL 342 (559)
T PTZ00317 293 VPPEEQRIVFFGAGSAAIGVANNIADLAAEYGVTREEALKSFYLVDSKGL 342 (559)
T ss_pred CChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCe
Confidence 46888999999999999999999884 799 79999997754
No 413
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=72.57 E-value=3.4 Score=47.22 Aligned_cols=34 Identities=24% Similarity=0.519 Sum_probs=31.5
Q ss_pred HHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEE
Q psy9783 15 DLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIV 49 (726)
Q Consensus 15 ~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~ii 49 (726)
+.++.+||+|||+|.-|+.++-.|+..| .++++.
T Consensus 171 ~~~~GKrV~VIG~GaSA~di~~~l~~~g-a~vt~~ 204 (443)
T COG2072 171 EDLRGKRVLVIGAGASAVDIAPELAEVG-ASVTLS 204 (443)
T ss_pred cccCCCeEEEECCCccHHHHHHHHHhcC-CeeEEE
Confidence 4688999999999999999999999999 888885
No 414
>PRK07890 short chain dehydrogenase; Provisional
Probab=72.53 E-value=5 Score=40.88 Aligned_cols=34 Identities=24% Similarity=0.368 Sum_probs=29.1
Q ss_pred HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 17 IKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 17 L~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~ 51 (726)
|.+++|+|.| .|+||..+++.|+.-|. ++.++|.
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~-~V~~~~r 37 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGA-DVVLAAR 37 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeC
Confidence 5678899998 58999999999999996 6888774
No 415
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=72.52 E-value=15 Score=40.96 Aligned_cols=34 Identities=3% Similarity=0.137 Sum_probs=27.7
Q ss_pred cccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEc
Q psy9783 193 FKQFTLVMNALDNRAARNHVNRMCLASEVPLIESG 227 (726)
Q Consensus 193 ~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg 227 (726)
+.++|+|+.|+.+-.++.++-++ .+.++.+|+..
T Consensus 67 ~~~~D~vf~a~p~~~s~~~~~~~-~~~g~~VIDlS 100 (344)
T PLN02383 67 FDGVDIALFSAGGSISKKFGPIA-VDKGAVVVDNS 100 (344)
T ss_pred HcCCCEEEECCCcHHHHHHHHHH-HhCCCEEEECC
Confidence 47899999999998888888765 45688899755
No 416
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=72.47 E-value=4.2 Score=43.82 Aligned_cols=35 Identities=20% Similarity=0.298 Sum_probs=28.7
Q ss_pred HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 17 IKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 17 L~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
+.+++|||.| +|+||+++++.|+..|. +++++|.+
T Consensus 4 ~~~~~vlVTGatGfiG~~l~~~L~~~G~-~V~~~~r~ 39 (340)
T PLN02653 4 PPRKVALITGITGQDGSYLTEFLLSKGY-EVHGIIRR 39 (340)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCCC-EEEEEecc
Confidence 3467899999 59999999999999996 57777653
No 417
>PRK08589 short chain dehydrogenase; Validated
Probab=72.47 E-value=4.5 Score=42.24 Aligned_cols=33 Identities=27% Similarity=0.389 Sum_probs=27.8
Q ss_pred HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEe
Q psy9783 17 IKKSKVLVVGA-GGIGCELLKNLVLSGFSNIEIVD 50 (726)
Q Consensus 17 L~~~kVlvVGa-GgiGceiaknLal~Gv~~i~iiD 50 (726)
|.+++++|.|+ ||||.++++.|+..|. ++.+++
T Consensus 4 l~~k~vlItGas~gIG~aia~~l~~~G~-~vi~~~ 37 (272)
T PRK08589 4 LENKVAVITGASTGIGQASAIALAQEGA-YVLAVD 37 (272)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEe
Confidence 56788999985 8999999999999995 576765
No 418
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=72.46 E-value=3.9 Score=42.16 Aligned_cols=34 Identities=29% Similarity=0.455 Sum_probs=28.8
Q ss_pred HHhcCcEEEEcCc---hHHHHHHHHHHHhCCCeEEEEe
Q psy9783 16 LIKKSKVLVVGAG---GIGCELLKNLVLSGFSNIEIVD 50 (726)
Q Consensus 16 kL~~~kVlvVGaG---giGceiaknLal~Gv~~i~iiD 50 (726)
+|.+++|+|.|++ |||.++++.|+..|. ++.+++
T Consensus 3 ~l~~k~vlVtGas~~~giG~~~a~~l~~~G~-~vi~~~ 39 (256)
T PRK12859 3 QLKNKVAVVTGVSRLDGIGAAICKELAEAGA-DIFFTY 39 (256)
T ss_pred CcCCcEEEEECCCCCCChHHHHHHHHHHCCC-eEEEEe
Confidence 5778899999984 899999999999997 466654
No 419
>PRK07806 short chain dehydrogenase; Provisional
Probab=72.46 E-value=4.4 Score=41.16 Aligned_cols=33 Identities=27% Similarity=0.399 Sum_probs=27.1
Q ss_pred HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEe
Q psy9783 17 IKKSKVLVVGA-GGIGCELLKNLVLSGFSNIEIVD 50 (726)
Q Consensus 17 L~~~kVlvVGa-GgiGceiaknLal~Gv~~i~iiD 50 (726)
+.+++++|.|+ |+||..+++.|+..|. ++.+++
T Consensus 4 ~~~k~vlItGasggiG~~l~~~l~~~G~-~V~~~~ 37 (248)
T PRK07806 4 LPGKTALVTGSSRGIGADTAKILAGAGA-HVVVNY 37 (248)
T ss_pred CCCcEEEEECCCCcHHHHHHHHHHHCCC-EEEEEe
Confidence 45678999995 9999999999999996 465554
No 420
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=72.36 E-value=28 Score=36.44 Aligned_cols=73 Identities=16% Similarity=0.118 Sum_probs=48.7
Q ss_pred HHHHHhhCCCCeEEEEecccccccccccccc--cccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccceEEE
Q psy9783 164 RNSALNFNPDANIVAHHTSIISADFGVNYFK--QFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVEL 237 (726)
Q Consensus 164 k~~~~~~np~~~i~~~~~~i~~~~~~~~~~~--~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~ 237 (726)
.+.+.++-|..+++.-+..+....+...--. +.| |.-|-|+.+|...+-+++.+.+.--|++|..--...++.
T Consensus 115 ae~va~~lp~akVVkAFn~i~a~~l~~~~~~~~~~~-v~vagDD~~Ak~~v~~L~~~iG~~~ld~G~L~~a~~le~ 189 (211)
T COG2085 115 AEIVAKLLPGAKVVKAFNTIPAAVLADLAKPGGRRD-VLVAGDDAEAKAVVAELAEDIGFRPLDAGPLENARILEP 189 (211)
T ss_pred HHHHHHHCCCcchhhhhcccCHHHhccCCCcCCcee-EEEecCcHHHHHHHHHHHHhcCcceeecccccccccccc
Confidence 3677777888876655555543222211112 233 455789999999999999999999999997765554443
No 421
>PRK05442 malate dehydrogenase; Provisional
Probab=72.36 E-value=4.2 Score=44.82 Aligned_cols=32 Identities=28% Similarity=0.546 Sum_probs=28.4
Q ss_pred CcEEEEcC-chHHHHHHHHHHHhCC-C-----eEEEEeC
Q psy9783 20 SKVLVVGA-GGIGCELLKNLVLSGF-S-----NIEIVDL 51 (726)
Q Consensus 20 ~kVlvVGa-GgiGceiaknLal~Gv-~-----~i~iiD~ 51 (726)
.||.|||+ |.+|+.+|-.|+..|+ + +|.|+|-
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi 43 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEI 43 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEec
Confidence 58999998 9999999999998887 4 6999984
No 422
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=72.34 E-value=4.6 Score=46.90 Aligned_cols=35 Identities=20% Similarity=0.206 Sum_probs=30.0
Q ss_pred cCcEEEEcCchHHHHHHHHHHHhCCC-eEEEEeCCc
Q psy9783 19 KSKVLVVGAGGIGCELLKNLVLSGFS-NIEIVDLDT 53 (726)
Q Consensus 19 ~~kVlvVGaGgiGceiaknLal~Gv~-~i~iiD~D~ 53 (726)
...|+|||+|-+||.+|..|+..+-+ +|+|+|.+.
T Consensus 5 ~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~ 40 (494)
T PRK05257 5 KTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLD 40 (494)
T ss_pred cceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCC
Confidence 35799999999999999999997543 899999764
No 423
>PRK06138 short chain dehydrogenase; Provisional
Probab=72.33 E-value=4.8 Score=40.81 Aligned_cols=34 Identities=24% Similarity=0.369 Sum_probs=28.2
Q ss_pred HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 17 IKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 17 L~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~ 51 (726)
|++++++|.| .|+||.++++.|+..|. ++.+++.
T Consensus 3 ~~~k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r 37 (252)
T PRK06138 3 LAGRVAIVTGAGSGIGRATAKLFAREGA-RVVVADR 37 (252)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCC-eEEEecC
Confidence 4577899998 58999999999999995 5777664
No 424
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=72.24 E-value=4.8 Score=42.80 Aligned_cols=26 Identities=19% Similarity=0.383 Sum_probs=23.3
Q ss_pred hcCcEEEEcCchHHHHHHHHHHHhCC
Q psy9783 18 KKSKVLVVGAGGIGCELLKNLVLSGF 43 (726)
Q Consensus 18 ~~~kVlvVGaGgiGceiaknLal~Gv 43 (726)
...+|.+||+|.+|..+++.|...|+
T Consensus 2 ~~mkI~~IG~G~mG~aia~~l~~~g~ 27 (279)
T PRK07679 2 SIQNISFLGAGSIAEAIIGGLLHANV 27 (279)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCC
Confidence 34689999999999999999999984
No 425
>PRK07190 hypothetical protein; Provisional
Probab=72.12 E-value=4.5 Score=46.70 Aligned_cols=33 Identities=30% Similarity=0.420 Sum_probs=29.6
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783 20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDT 53 (726)
Q Consensus 20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~ 53 (726)
..|+|||+|..|.-+|-.|++.|+. +.|+|...
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar~Gi~-V~llEr~~ 38 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQLCGLN-TVIVDKSD 38 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCC-EEEEeCCC
Confidence 4799999999999999999999986 88888664
No 426
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=72.10 E-value=15 Score=40.66 Aligned_cols=34 Identities=18% Similarity=0.207 Sum_probs=26.8
Q ss_pred cccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEc
Q psy9783 193 FKQFTLVMNALDNRAARNHVNRMCLASEVPLIESG 227 (726)
Q Consensus 193 ~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg 227 (726)
+.++|+|+.|+.+.....++.. +.+.++++|+..
T Consensus 66 ~~~vD~Vf~alP~~~~~~~v~~-a~~aG~~VID~S 99 (343)
T PRK00436 66 LAGADVVFLALPHGVSMDLAPQ-LLEAGVKVIDLS 99 (343)
T ss_pred hcCCCEEEECCCcHHHHHHHHH-HHhCCCEEEECC
Confidence 4679999999999777766665 466899999865
No 427
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=72.09 E-value=4.8 Score=46.48 Aligned_cols=35 Identities=17% Similarity=0.408 Sum_probs=30.6
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccC
Q psy9783 20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTID 55 (726)
Q Consensus 20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie 55 (726)
-.|+|||.|.+|+.+|..|++.|. ++.|+|...+-
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~rG~-~V~LlEk~d~~ 41 (502)
T PRK13369 7 YDLFVIGGGINGAGIARDAAGRGL-KVLLCEKDDLA 41 (502)
T ss_pred cCEEEECCCHHHHHHHHHHHhCCC-cEEEEECCCCC
Confidence 469999999999999999999997 58888877553
No 428
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=72.06 E-value=4.8 Score=42.49 Aligned_cols=34 Identities=26% Similarity=0.345 Sum_probs=28.3
Q ss_pred HhcCcEEEEcC---chHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 17 IKKSKVLVVGA---GGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 17 L~~~kVlvVGa---GgiGceiaknLal~Gv~~i~iiD~ 51 (726)
|.++.++|.|+ +|||-++++.|+..|. ++.++|.
T Consensus 3 l~~k~~lItGas~~~GIG~aiA~~la~~G~-~Vil~~r 39 (274)
T PRK08415 3 MKGKKGLIVGVANNKSIAYGIAKACFEQGA-ELAFTYL 39 (274)
T ss_pred cCCcEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEec
Confidence 45688999998 5999999999999997 5767664
No 429
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=72.06 E-value=5 Score=44.16 Aligned_cols=28 Identities=25% Similarity=0.290 Sum_probs=24.4
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEE
Q psy9783 20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIV 49 (726)
Q Consensus 20 ~kVlvVGaGgiGceiaknLal~Gv~~i~ii 49 (726)
.||.|+|+|.+|+.++..|+..| +++++
T Consensus 8 mkI~IiGaGa~G~alA~~La~~g--~v~l~ 35 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARRG--PTLQW 35 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC--CEEEE
Confidence 68999999999999999999998 45544
No 430
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=72.03 E-value=3.4 Score=46.48 Aligned_cols=41 Identities=34% Similarity=0.474 Sum_probs=33.3
Q ss_pred cEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcC
Q psy9783 21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQ 62 (726)
Q Consensus 21 kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQ 62 (726)
+|.|||+|-+|..++..|+..|. +++++|.+.-....|+++
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~-~V~~~d~~~~~v~~l~~g 42 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGH-EVTGVDIDQEKVDKLNKG 42 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCC-eEEEEECCHHHHHHhhcC
Confidence 69999999999999999999997 588898765444445443
No 431
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=72.03 E-value=4.8 Score=41.47 Aligned_cols=35 Identities=20% Similarity=0.517 Sum_probs=29.0
Q ss_pred HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 17 IKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 17 L~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
+.+++++|.| .||||.++++.|+..|. ++.++|.+
T Consensus 4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~ 39 (263)
T PRK06200 4 LHGQVALITGGGSGIGRALVERFLAEGA-RVAVLERS 39 (263)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 5678899998 58999999999999996 47777754
No 432
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=72.01 E-value=5.8 Score=40.64 Aligned_cols=33 Identities=21% Similarity=0.523 Sum_probs=27.3
Q ss_pred cCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 19 KSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 19 ~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
+++|+|.| .|+||.++++.|+..|. ++.++|.+
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g~-~vi~~~r~ 35 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEGY-RVAVADIN 35 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence 45789998 57999999999999995 68888744
No 433
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=71.98 E-value=6 Score=45.04 Aligned_cols=44 Identities=16% Similarity=0.164 Sum_probs=34.5
Q ss_pred cCcEEEEcCchHHHHHHHHHHHhCC-CeEEEEeCCccCccCCCcC
Q psy9783 19 KSKVLVVGAGGIGCELLKNLVLSGF-SNIEIVDLDTIDVSNLNRQ 62 (726)
Q Consensus 19 ~~kVlvVGaGgiGceiaknLal~Gv-~~i~iiD~D~Ie~sNLnRQ 62 (726)
...|+|||+|-+|+.+|-.|++.+- .+++|+|.+.+--..-.|.
T Consensus 24 ~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~g~GaSgrn 68 (460)
T TIGR03329 24 QADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLCGAGASGRN 68 (460)
T ss_pred eeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCcccccccccc
Confidence 3579999999999999999999832 4799999988753333433
No 434
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=71.78 E-value=4.2 Score=42.61 Aligned_cols=34 Identities=15% Similarity=0.316 Sum_probs=28.6
Q ss_pred HhcCcEEEEcCc---hHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 17 IKKSKVLVVGAG---GIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 17 L~~~kVlvVGaG---giGceiaknLal~Gv~~i~iiD~ 51 (726)
+.++.++|.|+| |||.++++.|+..|. ++.++|.
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la~~G~-~vil~~r 40 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQ 40 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHHHCCC-EEEEEec
Confidence 567889999986 899999999999996 4777664
No 435
>PLN02503 fatty acyl-CoA reductase 2
Probab=71.75 E-value=19 Score=43.09 Aligned_cols=41 Identities=15% Similarity=0.349 Sum_probs=34.2
Q ss_pred CHHHHHHHhcCcEEEEcC-chHHHHHHHHHHHhC--CCeEEEEe
Q psy9783 10 EKDLEDLIKKSKVLVVGA-GGIGCELLKNLVLSG--FSNIEIVD 50 (726)
Q Consensus 10 g~~~q~kL~~~kVlvVGa-GgiGceiaknLal~G--v~~i~iiD 50 (726)
|...++.+++++|||-|+ |-||..+++.|++.+ +++|.++.
T Consensus 110 ~~~I~~f~~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~Lv 153 (605)
T PLN02503 110 GIGIAEFLRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLI 153 (605)
T ss_pred CcchhhhhcCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 445678899999999996 999999999999865 67888764
No 436
>PRK13748 putative mercuric reductase; Provisional
Probab=71.69 E-value=5.2 Score=46.55 Aligned_cols=33 Identities=18% Similarity=0.336 Sum_probs=29.4
Q ss_pred cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
.++|+|||.|.+|+|+|..|...|. +++|+..+
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~-~Vtli~~~ 302 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGS-KVTILARS 302 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-EEEEEecC
Confidence 4799999999999999999999996 68998754
No 437
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=71.67 E-value=4.9 Score=41.70 Aligned_cols=34 Identities=15% Similarity=0.344 Sum_probs=29.0
Q ss_pred HhcCcEEEEcC---chHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 17 IKKSKVLVVGA---GGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 17 L~~~kVlvVGa---GgiGceiaknLal~Gv~~i~iiD~ 51 (726)
+.++.++|.|+ +|||.++++.|+..|. ++.++|.
T Consensus 5 ~~~k~~lItGa~~s~GIG~a~a~~la~~G~-~v~l~~r 41 (256)
T PRK07889 5 LEGKRILVTGVITDSSIAFHVARVAQEQGA-EVVLTGF 41 (256)
T ss_pred ccCCEEEEeCCCCcchHHHHHHHHHHHCCC-EEEEecC
Confidence 66788999996 7999999999999996 5777764
No 438
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=71.65 E-value=4.7 Score=44.93 Aligned_cols=54 Identities=20% Similarity=0.406 Sum_probs=38.3
Q ss_pred HHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeE--EEEeCCcc--CccCCCcCCCCC
Q psy9783 13 LEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNI--EIVDLDTI--DVSNLNRQFLFH 66 (726)
Q Consensus 13 ~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i--~iiD~D~I--e~sNLnRQfLf~ 66 (726)
.+.--.+.+|.|||.||-||-++..|.+.|+..+ ..+|.|.- +.+...+-.++.
T Consensus 11 ~~~~~~~~~i~viGvGg~G~n~v~~l~~~~~~~~~~iainTD~~~L~~~~a~~ki~iG 68 (349)
T TIGR00065 11 LIQPSNKAKIKVIGVGGGGNNTVNRMLEEGVEGVEFIAINTDAQHLKTTKADKKILIG 68 (349)
T ss_pred hcCcccCCeEEEEEeCCcHHHHHHHHHHcCCCceEEEEEECCHHHHhcCCCCeEEEcC
Confidence 3333456799999999999999999999998754 55788763 333333444443
No 439
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=71.62 E-value=5.3 Score=44.00 Aligned_cols=33 Identities=42% Similarity=0.613 Sum_probs=29.1
Q ss_pred hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 18 KKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 18 ~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~ 51 (726)
..++|+|||+|.+|+|+|..|+..|. ++++++.
T Consensus 140 ~~~~vvViGgG~~g~e~A~~L~~~g~-~Vtlv~~ 172 (377)
T PRK04965 140 DAQRVLVVGGGLIGTELAMDLCRAGK-AVTLVDN 172 (377)
T ss_pred cCCeEEEECCCHHHHHHHHHHHhcCC-eEEEEec
Confidence 35799999999999999999999985 6888875
No 440
>PRK05086 malate dehydrogenase; Provisional
Probab=71.59 E-value=4.8 Score=43.95 Aligned_cols=33 Identities=39% Similarity=0.479 Sum_probs=27.0
Q ss_pred CcEEEEcC-chHHHHHHHHHHH-hCC-CeEEEEeCC
Q psy9783 20 SKVLVVGA-GGIGCELLKNLVL-SGF-SNIEIVDLD 52 (726)
Q Consensus 20 ~kVlvVGa-GgiGceiaknLal-~Gv-~~i~iiD~D 52 (726)
.||+|||+ |++|+.++..|.. .+. ..++++|..
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~ 36 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIA 36 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecC
Confidence 48999999 9999999998865 455 468998853
No 441
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=71.56 E-value=5.1 Score=43.11 Aligned_cols=32 Identities=22% Similarity=0.610 Sum_probs=28.1
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
.+|.|||+|-+|..++.+|+..|. .++++|.+
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~-~V~v~d~~ 33 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGH-QLQVFDVN 33 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCC-eEEEEcCC
Confidence 379999999999999999999995 68888754
No 442
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=71.54 E-value=5 Score=45.71 Aligned_cols=33 Identities=24% Similarity=0.411 Sum_probs=29.5
Q ss_pred cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
.++|+|||+|.+|+|++..|+..|. ++++++..
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~-~Vtli~~~ 201 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGT-RVTIVNRS 201 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCC-cEEEEEcc
Confidence 5799999999999999999999995 69999853
No 443
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=71.47 E-value=4.7 Score=48.19 Aligned_cols=34 Identities=24% Similarity=0.434 Sum_probs=30.6
Q ss_pred hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 18 KKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 18 ~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
...+|+|||+|..|...|..|++.|.. ++|+|.+
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~-V~V~E~~ 359 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVA-VTVYDRH 359 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCe-EEEEecC
Confidence 467999999999999999999999975 9999864
No 444
>PRK08226 short chain dehydrogenase; Provisional
Probab=71.44 E-value=4.3 Score=41.71 Aligned_cols=35 Identities=20% Similarity=0.421 Sum_probs=29.3
Q ss_pred HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 16 LIKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 16 kL~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~ 51 (726)
++.+++++|.| .|+||..+++.|+..|.. +.+++.
T Consensus 3 ~~~~~~~lItG~s~giG~~la~~l~~~G~~-Vv~~~r 38 (263)
T PRK08226 3 KLTGKTALITGALQGIGEGIARVFARHGAN-LILLDI 38 (263)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEecC
Confidence 35678899997 889999999999999964 778764
No 445
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=71.41 E-value=5.1 Score=46.57 Aligned_cols=35 Identities=26% Similarity=0.404 Sum_probs=30.6
Q ss_pred hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783 18 KKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDT 53 (726)
Q Consensus 18 ~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~ 53 (726)
...+|+|||+|..|..+|-.|++.|+ +++|+|...
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~~G~-~v~v~Er~~ 43 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQYGV-RVLVLERWP 43 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Confidence 45789999999999999999999998 588888653
No 446
>PRK06834 hypothetical protein; Provisional
Probab=71.38 E-value=4.5 Score=46.67 Aligned_cols=34 Identities=29% Similarity=0.524 Sum_probs=30.0
Q ss_pred cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783 19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDT 53 (726)
Q Consensus 19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~ 53 (726)
...|+|||+|..|+.+|-.|++.|+. ++|+|...
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~-v~vlEr~~ 36 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVD-VAIVERRP 36 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCc-EEEEecCC
Confidence 46799999999999999999999986 88888654
No 447
>PRK07538 hypothetical protein; Provisional
Probab=71.34 E-value=5 Score=44.72 Aligned_cols=33 Identities=27% Similarity=0.375 Sum_probs=29.3
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783 20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDT 53 (726)
Q Consensus 20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~ 53 (726)
.+|+|||+|-.|+.+|..|.+.|+. ++|+|...
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~-v~v~E~~~ 33 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIE-VVVFEAAP 33 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCc-EEEEEcCC
Confidence 3699999999999999999999985 89998653
No 448
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=71.26 E-value=4.9 Score=46.83 Aligned_cols=33 Identities=24% Similarity=0.468 Sum_probs=28.1
Q ss_pred cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
=++|.|||+|..|+.||.+|+.+|+ .++++|.+
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~-~V~l~d~~ 37 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGH-QVLLYDIR 37 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCC
Confidence 3579999999999999999999995 47777743
No 449
>PRK08177 short chain dehydrogenase; Provisional
Probab=71.18 E-value=5.9 Score=39.89 Aligned_cols=33 Identities=21% Similarity=0.488 Sum_probs=28.3
Q ss_pred CcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783 20 SKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLDT 53 (726)
Q Consensus 20 ~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D~ 53 (726)
++|+|.| .|+||.++++.|+..|. ++.++|.+.
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r~~ 35 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERGW-QVTATVRGP 35 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCCC-EEEEEeCCC
Confidence 4688888 89999999999999996 788888653
No 450
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=71.10 E-value=5.5 Score=42.73 Aligned_cols=33 Identities=24% Similarity=0.377 Sum_probs=27.5
Q ss_pred hcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 18 KKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 18 ~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~ 51 (726)
.+++|+|.| .||||.++++.|+..| .++.+++.
T Consensus 5 ~~k~vlVTGas~gIG~~~a~~L~~~G-~~V~~~~r 38 (322)
T PRK07453 5 AKGTVIITGASSGVGLYAAKALAKRG-WHVIMACR 38 (322)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHCC-CEEEEEEC
Confidence 456788998 6999999999999999 46777764
No 451
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=71.08 E-value=5.1 Score=40.13 Aligned_cols=32 Identities=28% Similarity=0.469 Sum_probs=26.1
Q ss_pred HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEE
Q psy9783 17 IKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIV 49 (726)
Q Consensus 17 L~~~kVlvVG-aGgiGceiaknLal~Gv~~i~ii 49 (726)
+.+++|+|.| .|+||.++++.|+..|.. +.++
T Consensus 3 ~~~~~vlItG~sg~iG~~l~~~l~~~G~~-v~~~ 35 (248)
T PRK05557 3 LEGKVALVTGASRGIGRAIAERLAAQGAN-VVIN 35 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEE
Confidence 3567899998 699999999999999975 4443
No 452
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=71.06 E-value=4.8 Score=45.67 Aligned_cols=33 Identities=21% Similarity=0.268 Sum_probs=29.1
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783 20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDT 53 (726)
Q Consensus 20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~ 53 (726)
.+|.|||+|-+|.-+|..|+..|. +++.+|.|.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~-~V~~~D~~~ 36 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQK-QVIGVDINQ 36 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCC-EEEEEeCCH
Confidence 689999999999999999999994 588888654
No 453
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=70.95 E-value=7.3 Score=41.29 Aligned_cols=34 Identities=24% Similarity=0.371 Sum_probs=29.2
Q ss_pred hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 18 KKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 18 ~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
....|+|||+|..|+..|..|+..|.. +.|+|..
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G~~-V~liEk~ 57 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGLK-VAVFERK 57 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCCCe-EEEEecC
Confidence 356899999999999999999999975 7787753
No 454
>PLN02572 UDP-sulfoquinovose synthase
Probab=70.87 E-value=4.6 Score=46.03 Aligned_cols=35 Identities=37% Similarity=0.515 Sum_probs=30.2
Q ss_pred HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 16 LIKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 16 kL~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~ 51 (726)
++++++|||.| +|.||+++++.|+..|. +++++|.
T Consensus 44 ~~~~k~VLVTGatGfIGs~Lv~~L~~~G~-~V~~~d~ 79 (442)
T PLN02572 44 SSKKKKVMVIGGDGYCGWATALHLSKRGY-EVAIVDN 79 (442)
T ss_pred cccCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEec
Confidence 56778899998 69999999999999995 6888884
No 455
>KOG0069|consensus
Probab=70.86 E-value=3.7 Score=45.56 Aligned_cols=30 Identities=30% Similarity=0.347 Sum_probs=26.4
Q ss_pred HHHHHhcCcEEEEcCchHHHHHHHHHHHhC
Q psy9783 13 LEDLIKKSKVLVVGAGGIGCELLKNLVLSG 42 (726)
Q Consensus 13 ~q~kL~~~kVlvVGaGgiGceiaknLal~G 42 (726)
.-..+..++|.|+|+|.||.++|+.|.-.|
T Consensus 156 ~g~~~~gK~vgilG~G~IG~~ia~rL~~Fg 185 (336)
T KOG0069|consen 156 LGYDLEGKTVGILGLGRIGKAIAKRLKPFG 185 (336)
T ss_pred ccccccCCEEEEecCcHHHHHHHHhhhhcc
Confidence 345788999999999999999999999855
No 456
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=70.86 E-value=6.3 Score=40.32 Aligned_cols=31 Identities=23% Similarity=0.390 Sum_probs=26.1
Q ss_pred CcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 20 SKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 20 ~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~ 51 (726)
++|+|+| .|+||.++++.|+..|. ++.+++.
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~-~V~~~~r 32 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGH-KVIATGR 32 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC-EEEEEEC
Confidence 3689998 59999999999999996 5777764
No 457
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=70.85 E-value=5.4 Score=41.00 Aligned_cols=36 Identities=22% Similarity=0.289 Sum_probs=29.3
Q ss_pred HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 16 LIKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 16 kL~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
+|.+++|+|.| .||||..+++.|+..|.. +.+++.+
T Consensus 12 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~-v~~~~~~ 48 (258)
T PRK06935 12 SLDGKVAIVTGGNTGLGQGYAVALAKAGAD-IIITTHG 48 (258)
T ss_pred cCCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCC
Confidence 36778999998 689999999999999974 6666543
No 458
>PLN02985 squalene monooxygenase
Probab=70.84 E-value=5.2 Score=46.65 Aligned_cols=34 Identities=29% Similarity=0.481 Sum_probs=30.2
Q ss_pred cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783 19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDT 53 (726)
Q Consensus 19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~ 53 (726)
...|+|||+|..|+.+|..|++.|. +++|+|.+.
T Consensus 43 ~~DViIVGAG~aGlalA~aLa~~G~-~V~vlEr~~ 76 (514)
T PLN02985 43 ATDVIIVGAGVGGSALAYALAKDGR-RVHVIERDL 76 (514)
T ss_pred CceEEEECCCHHHHHHHHHHHHcCC-eEEEEECcC
Confidence 4579999999999999999999995 599999874
No 459
>PRK06370 mercuric reductase; Validated
Probab=70.81 E-value=5.5 Score=45.27 Aligned_cols=33 Identities=18% Similarity=0.425 Sum_probs=29.4
Q ss_pred cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
.++|+|||.|.+|+|+|..|...|. +++|++..
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~-~Vtli~~~ 203 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGS-EVTVIERG 203 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC-eEEEEEcC
Confidence 4799999999999999999999996 58998753
No 460
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=70.79 E-value=5 Score=45.37 Aligned_cols=33 Identities=21% Similarity=0.308 Sum_probs=29.2
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783 20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDT 53 (726)
Q Consensus 20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~ 53 (726)
..|+|||+|..|+..|..|++.|+ ++.|+|...
T Consensus 6 ~DViIVGaGpAG~~aA~~La~~G~-~V~llEr~~ 38 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAREGA-QVLVIERGN 38 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHhCCC-eEEEEEcCC
Confidence 579999999999999999999997 588888653
No 461
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=70.79 E-value=4.9 Score=41.76 Aligned_cols=33 Identities=15% Similarity=0.275 Sum_probs=28.0
Q ss_pred HhcCcEEEEcC---chHHHHHHHHHHHhCCCeEEEEe
Q psy9783 17 IKKSKVLVVGA---GGIGCELLKNLVLSGFSNIEIVD 50 (726)
Q Consensus 17 L~~~kVlvVGa---GgiGceiaknLal~Gv~~i~iiD 50 (726)
+.++.++|.|+ +|||.++++.|+..|. ++.+++
T Consensus 5 ~~~k~~lItGa~~s~GIG~aia~~la~~G~-~v~~~~ 40 (257)
T PRK08594 5 LEGKTYVVMGVANKRSIAWGIARSLHNAGA-KLVFTY 40 (257)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEec
Confidence 56788999997 5999999999999997 576665
No 462
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=70.71 E-value=9 Score=42.51 Aligned_cols=51 Identities=25% Similarity=0.460 Sum_probs=35.8
Q ss_pred EEEEcCchHHHHHHHHH--HHhCCCeEEEEeCCccCccCCCcCCCCCCCccChh
Q psy9783 22 VLVVGAGGIGCELLKNL--VLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKS 73 (726)
Q Consensus 22 VlvVGaGgiGceiaknL--al~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~ 73 (726)
|+|||+|..|+.+|..| +..|. ++.|||...--.-.-++-..|-..+++..
T Consensus 2 viIvGaGpAGlslA~~l~~~~~g~-~Vllid~~~~~~~~~~~tW~~~~~~~~~~ 54 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADARPGL-SVLLIDPKPKPPWPNDRTWCFWEKDLGPL 54 (374)
T ss_pred EEEECCcHHHHHHHHHHHhcCCCC-EEEEEcCCccccccCCcccccccccccch
Confidence 78999999999999999 55553 79999976543222333444555666653
No 463
>PRK07074 short chain dehydrogenase; Provisional
Probab=70.63 E-value=6.4 Score=40.28 Aligned_cols=33 Identities=39% Similarity=0.671 Sum_probs=27.6
Q ss_pred cCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 19 KSKVLVVGA-GGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 19 ~~kVlvVGa-GgiGceiaknLal~Gv~~i~iiD~D 52 (726)
+++++|.|+ |+||.++++.|+..|. ++.++|.+
T Consensus 2 ~k~ilItGat~~iG~~la~~L~~~g~-~v~~~~r~ 35 (257)
T PRK07074 2 KRTALVTGAAGGIGQALARRFLAAGD-RVLALDID 35 (257)
T ss_pred CCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 467999986 8999999999999995 68887753
No 464
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=70.60 E-value=5.4 Score=45.08 Aligned_cols=33 Identities=18% Similarity=0.449 Sum_probs=29.3
Q ss_pred cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
.++|+|||+|.+|+|++..|...|. ++++++..
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~-~Vtli~~~ 202 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGS-KVTVIEML 202 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-cEEEEEcC
Confidence 4689999999999999999999996 58998854
No 465
>PRK07577 short chain dehydrogenase; Provisional
Probab=70.58 E-value=5.8 Score=39.78 Aligned_cols=35 Identities=29% Similarity=0.350 Sum_probs=28.7
Q ss_pred hcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783 18 KKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLDT 53 (726)
Q Consensus 18 ~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D~ 53 (726)
.+++|+|+| .|+||.++++.|+..|. ++.+++.+.
T Consensus 2 ~~k~vlItG~s~~iG~~ia~~l~~~G~-~v~~~~r~~ 37 (234)
T PRK07577 2 SSRTVLVTGATKGIGLALSLRLANLGH-QVIGIARSA 37 (234)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEEeCCc
Confidence 356899998 58999999999999995 677877653
No 466
>PTZ00052 thioredoxin reductase; Provisional
Probab=70.52 E-value=5.7 Score=45.99 Aligned_cols=32 Identities=34% Similarity=0.404 Sum_probs=28.3
Q ss_pred cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~ 51 (726)
..+|+|||.|.+|+|+|..|+..|. +++++..
T Consensus 182 ~~~vvIIGgG~iG~E~A~~l~~~G~-~Vtli~~ 213 (499)
T PTZ00052 182 PGKTLIVGASYIGLETAGFLNELGF-DVTVAVR 213 (499)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-cEEEEEc
Confidence 3589999999999999999999995 5889864
No 467
>PRK06126 hypothetical protein; Provisional
Probab=70.49 E-value=5.3 Score=46.35 Aligned_cols=33 Identities=30% Similarity=0.480 Sum_probs=29.5
Q ss_pred cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
..+|+|||+|..|..+|-.|++.|+. ++|+|..
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~G~~-v~viEr~ 39 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRRGVD-SILVERK 39 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCc-EEEEeCC
Confidence 46899999999999999999999986 8888854
No 468
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=70.39 E-value=5.4 Score=45.78 Aligned_cols=34 Identities=26% Similarity=0.403 Sum_probs=30.1
Q ss_pred hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 18 KKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 18 ~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
...+|+|||+|..|.+.|..|++.|.. ++|+|..
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~-V~i~e~~ 173 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQ-VVVFDRH 173 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCe-EEEEecC
Confidence 457899999999999999999999975 8888764
No 469
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=70.38 E-value=5.9 Score=43.18 Aligned_cols=33 Identities=24% Similarity=0.373 Sum_probs=29.5
Q ss_pred CcEEEEcC-chHHHHHHHHHHHhCCC-eEEEEeCC
Q psy9783 20 SKVLVVGA-GGIGCELLKNLVLSGFS-NIEIVDLD 52 (726)
Q Consensus 20 ~kVlvVGa-GgiGceiaknLal~Gv~-~i~iiD~D 52 (726)
.||.|+|+ |.+|..++..|+..|+. +|+++|.+
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~ 35 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRP 35 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECc
Confidence 47999998 99999999999999975 79999963
No 470
>PRK06181 short chain dehydrogenase; Provisional
Probab=70.36 E-value=6.5 Score=40.37 Aligned_cols=31 Identities=29% Similarity=0.448 Sum_probs=26.5
Q ss_pred CcEEEEcC-chHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 20 SKVLVVGA-GGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 20 ~kVlvVGa-GgiGceiaknLal~Gv~~i~iiD~ 51 (726)
++|+|.|+ |+||.++++.|+..|. +++++|.
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~-~Vi~~~r 33 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGA-QLVLAAR 33 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 57899986 9999999999999995 7888764
No 471
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=70.30 E-value=4.9 Score=47.03 Aligned_cols=35 Identities=23% Similarity=0.258 Sum_probs=30.2
Q ss_pred HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~ 51 (726)
.|.+++|.|||.|.||.++|+.|...|. ++..+|.
T Consensus 135 ~l~gktvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~ 169 (525)
T TIGR01327 135 ELYGKTLGVIGLGRIGSIVAKRAKAFGM-KVLAYDP 169 (525)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECC
Confidence 5888999999999999999999987776 5777663
No 472
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=70.30 E-value=5.4 Score=45.71 Aligned_cols=31 Identities=29% Similarity=0.517 Sum_probs=27.9
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~ 51 (726)
.+|+|||+|.+|+|++..|...|. +++|+..
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~-~Vtlv~~ 205 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGS-EVDVVEM 205 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCC-CEEEEec
Confidence 689999999999999999999996 5888864
No 473
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=70.30 E-value=5.6 Score=49.91 Aligned_cols=42 Identities=29% Similarity=0.391 Sum_probs=35.6
Q ss_pred hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCC
Q psy9783 18 KKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLN 60 (726)
Q Consensus 18 ~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLn 60 (726)
..+||+|||+|..|-+.|..|++.|. +++++|.-.++.-|..
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh-~Vtv~E~~~i~gl~~~ 423 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGH-NVTAIDGLKITLLPFD 423 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCC-eEEEEccccccccccc
Confidence 67899999999999999999999995 5999998766655543
No 474
>PRK08278 short chain dehydrogenase; Provisional
Probab=70.25 E-value=6 Score=41.40 Aligned_cols=35 Identities=23% Similarity=0.384 Sum_probs=29.5
Q ss_pred HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 17 IKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 17 L~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
+.+++++|.| .||||.++++.|+..|. ++.+++..
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~ 39 (273)
T PRK08278 4 LSGKTLFITGASRGIGLAIALRAARDGA-NIVIAAKT 39 (273)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecc
Confidence 4567899998 69999999999999996 68887754
No 475
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=70.24 E-value=5.9 Score=39.68 Aligned_cols=38 Identities=24% Similarity=0.549 Sum_probs=29.0
Q ss_pred HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCcc
Q psy9783 16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTI 54 (726)
Q Consensus 16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~I 54 (726)
.|..++++|+|.|-+|.-+|+.|..+| -+++|+|-|.+
T Consensus 20 ~l~Gk~vvV~GYG~vG~g~A~~lr~~G-a~V~V~e~DPi 57 (162)
T PF00670_consen 20 MLAGKRVVVIGYGKVGKGIARALRGLG-ARVTVTEIDPI 57 (162)
T ss_dssp --TTSEEEEE--SHHHHHHHHHHHHTT--EEEEE-SSHH
T ss_pred eeCCCEEEEeCCCcccHHHHHHHhhCC-CEEEEEECChH
Confidence 467789999999999999999999999 56899998764
No 476
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=70.24 E-value=5.4 Score=39.90 Aligned_cols=28 Identities=29% Similarity=0.362 Sum_probs=24.2
Q ss_pred hcCcEEEEc-CchHHHHHHHHHHHhCCCe
Q psy9783 18 KKSKVLVVG-AGGIGCELLKNLVLSGFSN 45 (726)
Q Consensus 18 ~~~kVlvVG-aGgiGceiaknLal~Gv~~ 45 (726)
..++|+|+| .|+||.++++.|+..|..-
T Consensus 5 ~~~~vlItGasg~iG~~l~~~l~~~g~~v 33 (249)
T PRK12825 5 MGRVALVTGAARGLGRAIALRLARAGADV 33 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCeE
Confidence 456899998 6999999999999999853
No 477
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=70.23 E-value=21 Score=39.60 Aligned_cols=38 Identities=13% Similarity=0.198 Sum_probs=30.3
Q ss_pred cccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccC
Q psy9783 191 NYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTA 229 (726)
Q Consensus 191 ~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~ 229 (726)
+++.++|+|++|+.....+.... .+.++|+++|.++..
T Consensus 74 el~~~vDVVIdaT~~~~~~e~a~-~~~~aGk~VI~~~~~ 111 (341)
T PRK04207 74 DLLEKADIVVDATPGGVGAKNKE-LYEKAGVKAIFQGGE 111 (341)
T ss_pred HhhccCCEEEECCCchhhHHHHH-HHHHCCCEEEEcCCC
Confidence 34568999999998887777654 778889999988854
No 478
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=70.21 E-value=5.6 Score=45.27 Aligned_cols=33 Identities=33% Similarity=0.342 Sum_probs=28.8
Q ss_pred cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
..+|+|||.|.+|+|+|..|+..|. +++|++..
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~-~Vtli~~~ 198 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGS-ETHLVIRH 198 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-cEEEEecC
Confidence 4799999999999999999999995 58888643
No 479
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=70.20 E-value=5.4 Score=45.68 Aligned_cols=32 Identities=22% Similarity=0.383 Sum_probs=28.6
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
..|+|||+|..|+..|..|++.|+. +.|+|..
T Consensus 40 ~DViIVGaGPAG~~aA~~LA~~G~~-VlllEr~ 71 (450)
T PLN00093 40 LRVAVIGGGPAGACAAETLAKGGIE-TFLIERK 71 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCc-EEEEecC
Confidence 4699999999999999999999985 8888864
No 480
>PRK08628 short chain dehydrogenase; Provisional
Probab=70.16 E-value=5.6 Score=40.69 Aligned_cols=34 Identities=32% Similarity=0.413 Sum_probs=28.1
Q ss_pred HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 17 IKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 17 L~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~ 51 (726)
|.+++++|.| .||||.++++.|+..|.. +.+++.
T Consensus 5 l~~~~ilItGasggiG~~la~~l~~~G~~-v~~~~r 39 (258)
T PRK08628 5 LKDKVVIVTGGASGIGAAISLRLAEEGAI-PVIFGR 39 (258)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHcCCc-EEEEcC
Confidence 6678999998 679999999999999975 566543
No 481
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=70.16 E-value=5.3 Score=46.58 Aligned_cols=32 Identities=25% Similarity=0.483 Sum_probs=28.2
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
++|.|||+|..|+.++.+|+++|+ .++++|.+
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~-~V~l~D~~ 39 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGH-TVLLYDAR 39 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-eEEEEeCC
Confidence 579999999999999999999996 47888754
No 482
>PLN02688 pyrroline-5-carboxylate reductase
Probab=70.08 E-value=6.2 Score=41.30 Aligned_cols=30 Identities=33% Similarity=0.474 Sum_probs=24.9
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCC---CeEEEE
Q psy9783 20 SKVLVVGAGGIGCELLKNLVLSGF---SNIEIV 49 (726)
Q Consensus 20 ~kVlvVGaGgiGceiaknLal~Gv---~~i~ii 49 (726)
.||.+||+|.+|..+++.|...|. ..|+++
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~ 33 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTA 33 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEE
Confidence 369999999999999999999985 245554
No 483
>PRK12827 short chain dehydrogenase; Provisional
Probab=69.92 E-value=5.5 Score=40.12 Aligned_cols=33 Identities=27% Similarity=0.636 Sum_probs=28.1
Q ss_pred HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEe
Q psy9783 17 IKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVD 50 (726)
Q Consensus 17 L~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD 50 (726)
|.+++++|+| .|+||.++++.|+..|.. +.+++
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~g~~-v~~~~ 37 (249)
T PRK12827 4 LDSRRVLITGGSGGLGRAIAVRLAADGAD-VIVLD 37 (249)
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCCe-EEEEc
Confidence 4567899998 799999999999999974 77776
No 484
>PRK08643 acetoin reductase; Validated
Probab=69.89 E-value=6.7 Score=40.11 Aligned_cols=32 Identities=44% Similarity=0.712 Sum_probs=26.6
Q ss_pred cCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 19 KSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 19 ~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~ 51 (726)
+++++|.| .|+||.++++.|+..|. ++.++|.
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~-~v~~~~r 34 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGF-KVAIVDY 34 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 45778887 88999999999999996 6777763
No 485
>KOG0024|consensus
Probab=69.74 E-value=6.4 Score=43.60 Aligned_cols=35 Identities=46% Similarity=0.426 Sum_probs=30.7
Q ss_pred hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 18 KKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 18 ~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
..++|||.|||.||-....-+-.+|.++|.++|.+
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~ 203 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLV 203 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecC
Confidence 35799999999999988888888999999999854
No 486
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=69.72 E-value=6 Score=45.65 Aligned_cols=32 Identities=25% Similarity=0.454 Sum_probs=28.3
Q ss_pred cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~ 51 (726)
-++++|||.|.||+|++-.+.++|+. +||+..
T Consensus 173 P~~lvIiGgG~IGlE~a~~~~~LG~~-VTiie~ 204 (454)
T COG1249 173 PKSLVIVGGGYIGLEFASVFAALGSK-VTVVER 204 (454)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCc-EEEEec
Confidence 46799999999999999999999965 888764
No 487
>PRK13018 cell division protein FtsZ; Provisional
Probab=69.72 E-value=6.8 Score=44.23 Aligned_cols=74 Identities=23% Similarity=0.428 Sum_probs=49.4
Q ss_pred HhcCcEEEEcCchHHHHHHHHHHHhCCC--eEEEEeCCc--cCccCCCcCCCCCCC-----------ccChhHHHHHHHH
Q psy9783 17 IKKSKVLVVGAGGIGCELLKNLVLSGFS--NIEIVDLDT--IDVSNLNRQFLFHKQ-----------HVGKSKAQVARNS 81 (726)
Q Consensus 17 L~~~kVlvVGaGgiGceiaknLal~Gv~--~i~iiD~D~--Ie~sNLnRQfLf~~~-----------dvGk~Ka~va~~~ 81 (726)
..+.+|.|||+||-||-++..|...|+. ++..++.|. ++.+...+-.++.++ .+|+.-++-..+.
T Consensus 26 ~~~~~I~ViGvGGaG~N~v~~m~~~~~~~v~~iaiNTD~q~L~~~~a~~ki~iG~~~t~G~GaG~dp~~G~~aaee~~d~ 105 (378)
T PRK13018 26 FGNPKIVVVGCGGAGNNTINRLYEIGIEGAETIAINTDAQHLAMIKADKKILIGKSLTRGLGAGGDPEVGRKAAEESRDE 105 (378)
T ss_pred cCCCeEEEEEeCCcHHHHHHHHHHcCCCCceEEEEECCHHHHhcCCCCcEEecCCccCCCCCCCCChHHHHHHHHHHHHH
Confidence 3567999999999999999999999987 567778877 333434344444321 2455555555566
Q ss_pred hhhcCCCCc
Q psy9783 82 ALNFNPDAN 90 (726)
Q Consensus 82 l~~~np~~~ 90 (726)
+++.--++.
T Consensus 106 I~~~le~~D 114 (378)
T PRK13018 106 IKEVLKGAD 114 (378)
T ss_pred HHHHhcCCC
Confidence 666544443
No 488
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=69.69 E-value=5.7 Score=44.93 Aligned_cols=33 Identities=24% Similarity=0.564 Sum_probs=29.3
Q ss_pred cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
.++|+|||.|.+|+|++..|+..|. ++++++..
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~-~Vtli~~~ 207 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGV-KVTLINTR 207 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Confidence 5799999999999999999999995 58888753
No 489
>PRK06114 short chain dehydrogenase; Provisional
Probab=69.62 E-value=6.5 Score=40.36 Aligned_cols=35 Identities=26% Similarity=0.508 Sum_probs=29.1
Q ss_pred HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 17 IKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 17 L~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
+.++.++|.| .||||.++++.|+..|. ++.++|.+
T Consensus 6 ~~~k~~lVtG~s~gIG~~ia~~l~~~G~-~v~~~~r~ 41 (254)
T PRK06114 6 LDGQVAFVTGAGSGIGQRIAIGLAQAGA-DVALFDLR 41 (254)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 5677888887 78999999999999996 67777743
No 490
>PRK07677 short chain dehydrogenase; Provisional
Probab=69.58 E-value=6.8 Score=40.11 Aligned_cols=32 Identities=25% Similarity=0.465 Sum_probs=27.2
Q ss_pred CcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 20 SKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 20 ~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
++++|.| .||||.++++.|+..|. ++.++|.+
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~ 34 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRT 34 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 5788887 67899999999999997 78887755
No 491
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=69.56 E-value=6.3 Score=39.65 Aligned_cols=33 Identities=33% Similarity=0.520 Sum_probs=27.3
Q ss_pred HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEe
Q psy9783 17 IKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVD 50 (726)
Q Consensus 17 L~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD 50 (726)
+++++++|.| .|+||.++++.|+..|. .+.+.+
T Consensus 4 ~~~~~vlItGa~g~iG~~la~~l~~~g~-~v~~~~ 37 (245)
T PRK12936 4 LSGRKALVTGASGGIGEEIARLLHAQGA-IVGLHG 37 (245)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEc
Confidence 4578899998 69999999999999996 555554
No 492
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=69.55 E-value=6.4 Score=44.18 Aligned_cols=34 Identities=12% Similarity=0.185 Sum_probs=29.9
Q ss_pred CcEEEEcCchHHHHHHHHHHHhCC-CeEEEEeCCc
Q psy9783 20 SKVLVVGAGGIGCELLKNLVLSGF-SNIEIVDLDT 53 (726)
Q Consensus 20 ~kVlvVGaGgiGceiaknLal~Gv-~~i~iiD~D~ 53 (726)
++|+|||+|..|.+.|..|.+.|- .+|+|||...
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~ 35 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTD 35 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCC
Confidence 379999999999999999999885 3899999754
No 493
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=69.46 E-value=5.7 Score=41.74 Aligned_cols=34 Identities=18% Similarity=0.341 Sum_probs=28.1
Q ss_pred HhcCcEEEEcCc---hHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 17 IKKSKVLVVGAG---GIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 17 L~~~kVlvVGaG---giGceiaknLal~Gv~~i~iiD~ 51 (726)
|.++.++|.|++ |||.++++.|+..|. ++.+++.
T Consensus 5 l~~k~~lVTGas~~~GIG~aiA~~la~~Ga-~V~~~~r 41 (271)
T PRK06505 5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGA-ELAFTYQ 41 (271)
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHhCCC-EEEEecC
Confidence 556788999987 899999999999996 5666653
No 494
>PRK06924 short chain dehydrogenase; Provisional
Probab=69.44 E-value=6.7 Score=39.86 Aligned_cols=32 Identities=19% Similarity=0.402 Sum_probs=26.9
Q ss_pred CcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 20 SKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 20 ~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
++|+|.| .||||..+++.|+..|. ++.+++..
T Consensus 2 k~vlItGasggiG~~ia~~l~~~g~-~V~~~~r~ 34 (251)
T PRK06924 2 RYVIITGTSQGLGEAIANQLLEKGT-HVISISRT 34 (251)
T ss_pred cEEEEecCCchHHHHHHHHHHhcCC-EEEEEeCC
Confidence 4689998 69999999999999997 67777653
No 495
>PRK06182 short chain dehydrogenase; Validated
Probab=69.36 E-value=6.3 Score=40.93 Aligned_cols=34 Identities=26% Similarity=0.414 Sum_probs=27.1
Q ss_pred hcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 18 KKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 18 ~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
++++|+|.| .||||.++++.|+..|. ++.+++.+
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~ 36 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGY-TVYGAARR 36 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 357899998 49999999999999986 46666543
No 496
>PRK12320 hypothetical protein; Provisional
Probab=69.32 E-value=22 Score=43.32 Aligned_cols=30 Identities=20% Similarity=0.505 Sum_probs=26.2
Q ss_pred cEEEEc-CchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 21 KVLVVG-AGGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 21 kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~ 51 (726)
||||.| +|-||+++++.|...|. +++.+|.
T Consensus 2 kILVTGAaGFIGs~La~~Ll~~G~-~Vi~ldr 32 (699)
T PRK12320 2 QILVTDATGAVGRSVTRQLIAAGH-TVSGIAQ 32 (699)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCC-EEEEEeC
Confidence 799999 79999999999999994 6777774
No 497
>PRK06720 hypothetical protein; Provisional
Probab=69.27 E-value=6.7 Score=38.92 Aligned_cols=36 Identities=25% Similarity=0.383 Sum_probs=29.7
Q ss_pred HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 16 LIKKSKVLVVGA-GGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 16 kL~~~kVlvVGa-GgiGceiaknLal~Gv~~i~iiD~D 52 (726)
.|.++.++|.|+ ||||.++++.|+..| .++.++|.+
T Consensus 13 ~l~gk~~lVTGa~~GIG~aia~~l~~~G-~~V~l~~r~ 49 (169)
T PRK06720 13 KLAGKVAIVTGGGIGIGRNTALLLAKQG-AKVIVTDID 49 (169)
T ss_pred ccCCCEEEEecCCChHHHHHHHHHHHCC-CEEEEEECC
Confidence 367788888885 579999999999999 568888855
No 498
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=69.22 E-value=5.4 Score=44.94 Aligned_cols=34 Identities=26% Similarity=0.332 Sum_probs=29.7
Q ss_pred hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 18 KKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 18 ~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
...+|+|||.|++|..+|+.|...|. +++..|.+
T Consensus 2 ~~~~i~iiGlG~~G~slA~~l~~~G~-~V~g~D~~ 35 (418)
T PRK00683 2 GLQRVVVLGLGVTGKSIARFLAQKGV-YVIGVDKS 35 (418)
T ss_pred CCCeEEEEEECHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 34689999999999999999999996 68888854
No 499
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=69.21 E-value=6.6 Score=42.33 Aligned_cols=31 Identities=23% Similarity=0.456 Sum_probs=26.7
Q ss_pred cEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783 21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52 (726)
Q Consensus 21 kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D 52 (726)
+|.|||+|.+|..++++|+..|. ++.+.|.+
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~-~V~~~dr~ 32 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGH-DCVGYDHD 32 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCC-EEEEEECC
Confidence 69999999999999999999995 46677654
No 500
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=69.12 E-value=6.2 Score=45.52 Aligned_cols=32 Identities=28% Similarity=0.307 Sum_probs=28.0
Q ss_pred cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783 19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL 51 (726)
Q Consensus 19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~ 51 (726)
..+|+|||.|.+|+|+|..|+..|. +++|+..
T Consensus 180 ~~~vvIIGgG~iG~E~A~~l~~~G~-~Vtli~~ 211 (484)
T TIGR01438 180 PGKTLVVGASYVALECAGFLAGIGL-DVTVMVR 211 (484)
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCC-cEEEEEe
Confidence 3689999999999999999999996 6888753
Done!