RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9783
(726 letters)
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO,
heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens}
PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A
Length = 640
Score = 495 bits (1276), Expect = e-167
Identities = 296/757 (39%), Positives = 391/757 (51%), Gaps = 172/757 (22%)
Query: 5 IPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFL 64
+ ++L + + +VLVVGAGGIGCELLKNLVL+GFS+I+++DLDTIDVSNLNRQFL
Sbjct: 3 LSRGLPRELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFL 62
Query: 65 FHKQHVGKSKAQVARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALN 124
Sbjct: 62 ------------------------------------------------------------ 62
Query: 125 FNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSII 184
F K+HVG+SKAQVA+ S L F P ANIVA+H SI+
Sbjct: 63 -------------------------FQKKHVGRSKAQVAKESVLQFYPKANIVAYHDSIM 97
Query: 185 SADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKKGETK 244
+ D+ V +F+QF LVMNALDNRAARNHVNRMCLA++VPLIESGTAGY GQV IKKG T+
Sbjct: 98 NPDYNVEFFRQFILVMNALDNRAARNHVNRMCLAADVPLIESGTAGYLGQVTTIKKGVTE 157
Query: 245 CYECDPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNYLERLMLMKRCPLILKIQKLLER 304
CYEC PKP +T+PG TIRNTPSEPIHCIVWAK+LFN L
Sbjct: 158 CYECHPKPTQRTFPGATIRNTPSEPIHCIVWAKYLFNQL--------------------- 196
Query: 305 LSAMNVIRSQLPKLIQAVQLGILRLNPFTVLSGLNICSSDAGAKAAASEATANGDVVRTS 364
+ ++ R +P A+A A + +GD+ R S
Sbjct: 197 ----------FGEEDADQEVSPDRADPEAAWEPTE-------AEARARASNEDGDIKRIS 239
Query: 365 TRAWASACGYDPRKLFAKFFDADIRYLISMSDLWKTRKAPQPLVWDTLSD----AVAGSS 420
T+ WA + GYDP KLF K F DIRYL++M LW+ RK P PL W + A
Sbjct: 240 TKEWAKSTGYDPVKLFTKLFKDDIRYLLTMDKLWRKRKPPVPLDWAEVQSQGEETNASDQ 299
Query: 421 KETDGGGLKDQRVWSVAECARVFERSVRELKTKFDAAVEKDEHLVWDKDDKPAMDFVAAC 480
+ GLKDQ+V V AR+F +S+ L+ A L+WDKDD AMDFV +
Sbjct: 300 QNEPQLGLKDQQVLDVKSYARLFSKSIETLRVHL-AEKGDGAELIWDKDDPSAMDFVTSA 358
Query: 481 ANIRAHVFSIPEKSRFDIKSMAGNIIPAIATSNAIVAGLVVLHAIHVLQARFSSCQTVYL 540
AN+R H+FS+ KSRFDIKSMAGNIIPAIAT+NA++AGL+VL + +L + C+T++L
Sbjct: 359 ANLRMHIFSMNMKSRFDIKSMAGNIIPAIATTNAVIAGLIVLEGLKILSGKIDQCRTIFL 418
Query: 541 RKKPNHRDQMIVPEKYLTAPNPTCPVCSPKPQRTIGLDVTKMTVAEFEEAVLKKTLNMSA 600
K+PN R +++VP L PNP C VC+ KP+ T+ L+V K+TV ++ ++K+ M A
Sbjct: 419 NKQPNPRKKLLVPCA-LDPPNPNCYVCASKPEVTVRLNVHKVTVLTLQDKIVKEKFAMVA 477
Query: 601 MVDVMVEASGSVIISSEEGETEANNDKPL-----EHG---------------LIISHRVS 640
+ + G+++ISSEEGETEANN K L +G + I H
Sbjct: 478 PDVQIEDGKGTILISSEEGETEANNHKKLSEFGIRNGSRLQADDFLQDYTLLINILHSED 537
Query: 641 ARDGPEFEIL-DQKDLPQPPAPDAAASTTDAAEEKM---------------------ETN 678
EFE++ D + P + AA + + E +
Sbjct: 538 LGKDVEFEVVGDAPEKVGPKQAEDAAKSITNGSDDGAQPSTSTAQEQDDVLIVDSDEEDS 597
Query: 679 GNGNGDVGTPDSKKRKVDSSDESLPAKKVRTDEKSTD 715
N S+KRK+D E+L AK+ R ++K
Sbjct: 598 SNNADVSEEERSRKRKLD-EKENLSAKRSRIEQKEEL 633
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase,
conformationa thioester, adenylation,
transthioesterification, ATP-bindin nucleotide-binding;
2.70A {Saccharomyces cerevisiae}
Length = 1015
Score = 286 bits (733), Expect = 3e-84
Identities = 138/688 (20%), Positives = 224/688 (32%), Gaps = 194/688 (28%)
Query: 8 VFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIE-----IVDLDTIDVSNLNRQ 62
VF D + I SKV +VG+G IGCE+LKN L G + + D D+I+ SNLNRQ
Sbjct: 414 VFGLDFQKKIANSKVFLVGSGAIGCEMLKNWALLGLGSGSDGYIVVTDNDSIEKSNLNRQ 473
Query: 63 FLFHKQHVGKSKAQVARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSA 122
FLF + VGK+K++VA +
Sbjct: 474 FLFRP----------------------------------------KDVGKNKSEVAAEAV 493
Query: 123 LNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTS 182
NPD + +
Sbjct: 494 CAMNPDLKGKINA----------------------------------------KIDKVGP 513
Query: 183 IISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKKGE 242
F ++++ V NALDN AR +V+R C+ PL+ESGT G +G ++I
Sbjct: 514 ETEEIFNDSFWESLDFVTNALDNVDARTYVDRRCVFYRKPLLESGTLGTKGNTQVIIPRL 573
Query: 243 TKCYECDPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNYLERLMLMKRCPLILKIQKLL 302
T+ Y P K+ P CT+R+ P++ H I WAK LF + + +
Sbjct: 574 TESYSSSRDPPEKSIPLCTLRSFPNKIDHTIAWAKSLFQGYFTDSAENVNMYLTQPNFVE 633
Query: 303 ERLSAMNVIRSQLPKLIQAVQLGILRLNPFTVLSGLNICSSDAGAKAAASEATANGDVVR 362
+ L ++ L + ++
Sbjct: 634 QTLKQSGDVKGVLESISDSL---------------------------------------- 653
Query: 363 TSTRAWASACGYDPRKLFAKFFDADIRYLI----------SMSDLWK-TRKAPQPLVWDT 411
+S C R F K F+ DI+ L+ + W ++AP PL +D
Sbjct: 654 SSKPHNFEDCIKWARLEFEKKFNHDIKQLLFNFPKDAKTSNGEPFWSGAKRAPTPLEFDI 713
Query: 412 --------------LSDAVAGSSKETDGGGLKDQRVWSVAECARVFERS--------VRE 449
L G + SV + + E + V +
Sbjct: 714 YNNDHFHFVVAGASLRAYNYGIKSDDSNSKPNVDEYKSVIDHMIIPEFTPNANLKIQVND 773
Query: 450 LKTKFDAAVEKDE------------------------HLVWDKDDKPAMDFVAACANIRA 485
+A D D ++F+ AC+N RA
Sbjct: 774 DDPDPNANAANGSDEIDQLVSSLPDPSTLAGFKLEPVDFEKDDDTNHHIEFITACSNCRA 833
Query: 486 HVFSIPEKSRFDIKSMAGNIIPAIATSNAIVAGLVVLHAIHVLQARFSSCQTVYLRKKPN 545
+ I R K +AG IIPAIAT+ ++V GLV L ++ + Q Y N
Sbjct: 834 QNYFIETADRQKTKFIAGRIIPAIATTTSLVTGLVNLELYKLIDNKTDIEQ--YKNGFVN 891
Query: 546 HRDQMIVPEKYLTAPNPTCPVCSPKPQRTIGLDVTK-MTVAEFEEAVLKKT-LNMSAMVD 603
+ + +P + D+ + +++ E K L ++
Sbjct: 892 LALPFFGFSEPIASPKGEYNNKK-YDKIWDRFDIKGDIKLSDLIEHFEKDEGLEIT---- 946
Query: 604 VMVEASGSVIISS--EEGETEANNDKPL 629
M+ S++ +S + + + P+
Sbjct: 947 -MLSYGVSLLYASFFPPKKLKERLNLPI 973
Score = 143 bits (362), Expect = 1e-35
Identities = 38/274 (13%), Positives = 78/274 (28%), Gaps = 94/274 (34%)
Query: 8 VFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHK 67
V K+ ++ S VL++G G+G E+ KN+VL+G ++ + D + + +++L+ QF +
Sbjct: 16 VLGKEAMLKMQTSNVLILGLKGLGVEIAKNVVLAGVKSMTVFDPEPVQLADLSTQFFLTE 75
Query: 68 QHVGKSKAQVARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNP 127
+ +G+ + V R N
Sbjct: 76 ----------------------------------------KDIGQKRGDVTRAKLAELNA 95
Query: 128 DANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISAD 187
+++ +
Sbjct: 96 Y--------------------------------------------------VPVNVLDSL 105
Query: 188 FGVNYFKQFTLV-MNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKKGETKCY 246
V QF +V + + +N C +S + I S T G G + E
Sbjct: 106 DDVTQLSQFQVVVATDTVSLEDKVKINEFCHSSGIRFISSETRGLFGNTFVDLGDEFTVL 165
Query: 247 ECDPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLF 280
+ + +T I + + +H
Sbjct: 166 DPTGEE-PRTGMVSDIEPDG--TVTMLDDNRHGL 196
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic
subunit chimera; multifunction macromolecular complex,
ubiquitin, ATP, conformational change, thioester,
switch, adenylation, protein turnover, ligase; HET: ATP;
2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Length = 805
Score = 259 bits (663), Expect = 1e-75
Identities = 85/294 (28%), Positives = 120/294 (40%), Gaps = 101/294 (34%)
Query: 8 VFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHK 67
+ L+ L+ KVLV+GAGG+GCELLKNL LSGF I ++D+DTIDVSNLNRQFL
Sbjct: 400 PSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFL--- 456
Query: 68 QHVGKSKAQVARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNP 127
F + +G+ KA+VA + P
Sbjct: 457 -------------------------------------FRPKDIGRPKAEVAAEFLNDRVP 479
Query: 128 DANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISAD 187
+ N+V H I D
Sbjct: 480 NCNVVPHFNKI-----------------------------------------------QD 492
Query: 188 FGVNYFKQFTLVMNALDNRAARNHVNRMCL------------ASEVPLIESGTAGYEGQV 235
F +++QF +++ LD+ AR +N M + +S VPLI+ GT G++G
Sbjct: 493 FNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNA 552
Query: 236 ELIKKGETKCYEC--DPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNYLERLM 287
+I G T C EC + P +P CTI + P P HCI + + L E+
Sbjct: 553 RVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPKEQPF 606
Score = 129 bits (326), Expect = 3e-31
Identities = 31/177 (17%), Positives = 62/177 (35%), Gaps = 14/177 (7%)
Query: 461 DEHLVWDKDDKPAMDFVAACANIRAHVFSIPEKSRFDIKSMAGNIIPAIATSNAIVAGLV 520
E + D DD + ++ + RA ++I + + + IIPA+A++NA++A +
Sbjct: 607 GEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVC 666
Query: 521 VLHAIHVLQARFSSCQTVYLRKKPNHRDQMIVPEKYLTAPNPTCPVCSPKPQRTIGLDVT 580
+ + + + + + + CP CS P + I
Sbjct: 667 ATEVFKIATSAYIPLNNYLVFNDVD----GLYTYTFEAERKENCPACSQLP-QNIQFS-P 720
Query: 581 KMTVAEFEEAVLKKT-LNMSAMVDVMVEASGSV------IISSEEGETEANNDKPLE 630
+ E + + L M + G ++S E T N K L+
Sbjct: 721 SAKLQEVLDYLTNSASLQMK-SPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLK 776
>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase;
2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B
3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*
Length = 434
Score = 247 bits (633), Expect = 5e-75
Identities = 85/300 (28%), Positives = 120/300 (40%), Gaps = 101/300 (33%)
Query: 8 VFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHK 67
+ L+ L+ KVLV+GAGG+GCELLKNL LSGF I ++D+DTIDVSNLNRQFL
Sbjct: 29 PSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFL--- 85
Query: 68 QHVGKSKAQVARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNP 127
F + +G+ KA+VA + P
Sbjct: 86 -------------------------------------FRPKDIGRPKAEVAAEFLNDRVP 108
Query: 128 DANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISAD 187
+ N+V H I D
Sbjct: 109 NCNVVPHFNKI-----------------------------------------------QD 121
Query: 188 FGVNYFKQFTLVMNALDNRAARNHVNRMCL------------ASEVPLIESGTAGYEGQV 235
F +++QF +++ LD+ AR +N M + +S VPLI+ GT G++G
Sbjct: 122 FNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNA 181
Query: 236 ELIKKGETKCYECDPK--PAAKTYPGCTIRNTPSEPIHCIVWAKHLFNYLERLMLMKRCP 293
+I G T C EC + P +P CTI + P P HCI + + L E+
Sbjct: 182 RVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPL 241
Score = 114 bits (286), Expect = 4e-27
Identities = 31/176 (17%), Positives = 65/176 (36%), Gaps = 12/176 (6%)
Query: 461 DEHLVWDKDDKPAMDFVAACANIRAHVFSIPEKSRFDIKSMAGNIIPAIATSNAIVAGLV 520
E + D DD + ++ + RA ++I + + + IIPA+A++NA++A +
Sbjct: 236 GEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVC 295
Query: 521 VLHAIHVLQARFSSCQTVYLRKKPNHRDQMIVPEKYLTAPNPTCPVCSPKPQRTIGLDVT 580
+ + + + + + + CP CS P + I
Sbjct: 296 ATEVFKIATSAYIPLNNYLV----FNDVDGLYTYTFEAERKENCPACSQLP-QNIQFS-P 349
Query: 581 KMTVAEFEEAVLKKT-LNMSAM-VDVMVEASGSVI----ISSEEGETEANNDKPLE 630
+ E + + L M + + +E + ++S E T N K L+
Sbjct: 350 SAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLK 405
>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase;
2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A
3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*
Length = 531
Score = 149 bits (377), Expect = 2e-38
Identities = 44/304 (14%), Positives = 83/304 (27%), Gaps = 93/304 (30%)
Query: 17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQ 76
++ + V ++ A G E+LKNLVL G + I+D + + + F +
Sbjct: 30 LESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQR--------- 80
Query: 77 VARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHT 136
+GK++A+ A N D +
Sbjct: 81 -------------------------------SSIGKNRAEAAMEFLQELNSDVSGSFVEE 109
Query: 137 SIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGVNYFKQF 196
S L D ++F +F
Sbjct: 110 SPENLL--------------------------------------------DNDPSFFCRF 125
Query: 197 TLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKKGETKCYECDPKPAAKT 256
T+V+ + + + S++PL+ T G G + +I K
Sbjct: 126 TVVVATQLPESTSLRLADVLWNSQIPLLICRTYGLVGYMRIIIKEHPVIESHPDNA---L 182
Query: 257 YPGCTIRNTPSEPIHCIVWAKHLFNYLERLMLMKRCPLILKIQKLLERLSAMNVIRSQLP 316
+ P H + + P I+ I K L + + ++P
Sbjct: 183 EDLRLDKPFPELREHFQSYDLDHMEKKDH----SHTPWIVIIAKYLAQWYSET--NGRIP 236
Query: 317 KLIQ 320
K +
Sbjct: 237 KTYK 240
>1z7l_A Ubiquitin-activating enzyme E1 1; SCCH, second catalytic cysteine
half-domain, ligase; HET: TBR; 2.80A {Mus musculus}
Length = 276
Score = 117 bits (294), Expect = 2e-29
Identities = 48/313 (15%), Positives = 88/313 (28%), Gaps = 89/313 (28%)
Query: 245 CYECDPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNYLERLMLMKRCPLILKIQKLLER 304
+ K+ P CT++N P+ H + WA+ F +
Sbjct: 2 GHHHHHHEFEKSIPICTLKNFPNAIEHTLQWARDEFE-----------------GLFKQP 44
Query: 305 LSAMNVIRSQLPKLIQAVQLGILRLNPFTVLSGLNICSSDAGAKAAASEATANGDVVRTS 364
+N + + + ++L AG + +V
Sbjct: 45 AENVNQYLTDSKFVERTLRL--------------------AGTQPLEVLEAVQRSLVLQR 84
Query: 365 TRAWASACGYDPRKLFAKFFDADIRYLISM----------SDLWK-TRKAPQPLVWDT-- 411
+ W C + + +IR L+ + W ++ P PL +D
Sbjct: 85 PQTWGD-CVTWACHHWHTQYCNNIRQLLHNFPPDQLTSSGAPFWSGPKRCPHPLTFDVNN 143
Query: 412 ------------LSDAVAGSSKETDGGGLKD------QRVWSVAECARVF---------- 443
L G + D + ++ ++
Sbjct: 144 TLHLDYVMAAANLFAQTYGLTGSQDRAAVASLLQSVQVPEFTPKSGVKIHVSDQELQSAN 203
Query: 444 --------ERSVRELKTKFDAAVEKDEHLVWDKDD--KPAMDFVAACANIRAHVFSIPEK 493
E L + K + ++KDD MDF+ A +N+RA + I
Sbjct: 204 ASVDDSRLEELKATLPSPDKLPGFKMYPIDFEKDDDSNFHMDFIVAASNLRAENYDISPA 263
Query: 494 SRFDIKSMAGNII 506
R K +AG II
Sbjct: 264 DRHKSKLIAGKII 276
>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold,
ATP-binding, UBL conjugation pathway, transfer
structural genomics consortium, SGC; HET: ATP; 2.00A
{Homo sapiens} PDB: 3guc_A*
Length = 292
Score = 113 bits (284), Expect = 8e-28
Identities = 48/249 (19%), Positives = 75/249 (30%), Gaps = 80/249 (32%)
Query: 17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQ 76
I+ V +VG GG+G + L G + + D D ++++N+NR
Sbjct: 34 IRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRL-------------- 79
Query: 77 VARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHT 136
F G SK Q A ++ N NPD H+
Sbjct: 80 ---------------------------FFQPHQAGLSKVQAAEHTLRNINPDVLFEVHNY 112
Query: 137 SIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGVNYFKQF 196
+I H ++ G+ K
Sbjct: 113 NI----------------------------------TTVENFQHFMDRISNGGLEEGKPV 138
Query: 197 TLVMNALDNRAARNHVNRMCLASEVPLIESG--TAGYEGQVELIKKGETKCYEC---DPK 251
LV++ +DN AR +N C +ESG G ++LI GE+ C+ C
Sbjct: 139 DLVLSCVDNFEARMTINTACNELGQTWMESGVSENAVSGHIQLIIPGESACFACAPPLVV 198
Query: 252 PAAKTYPGC 260
A
Sbjct: 199 AANIDEKTL 207
>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL,
ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A*
3kyc_A* 3kyd_A*
Length = 346
Score = 106 bits (266), Expect = 4e-25
Identities = 40/237 (16%), Positives = 70/237 (29%), Gaps = 88/237 (37%)
Query: 17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQ 76
++ S+VL+VG G+G E+ KNL+L+G + ++D + + + QFL VG+++
Sbjct: 34 LRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNR-- 91
Query: 77 VARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHT 136
A+ + A N NP ++
Sbjct: 92 --------------------------------------AEASLERAQNLNPMVDVKVDTE 113
Query: 137 SIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGVNYFKQF 196
I ++F QF
Sbjct: 114 DI-----------------------------------------------EKKPESFFTQF 126
Query: 197 TLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKKGETKCYECDPKPA 253
V +R V+++C + + GY G GE + E K A
Sbjct: 127 DAVCLTCCSRDVIVKVDQICHKNSIKFFTGDVFGYHGYT-FANLGEHEFVEEKTKVA 182
>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome
formation, non-canonical E1, ATP BI UBL, ATG8, ATG12,
ATG10, ATG3, UBL activation, thiolation; 1.91A
{Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*
Length = 340
Score = 104 bits (262), Expect = 1e-24
Identities = 44/257 (17%), Positives = 76/257 (29%), Gaps = 83/257 (32%)
Query: 15 DLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSK 74
D+IK +KVL++GAG +GC + + L+ G I VD T+ SN RQ L++ + GK K
Sbjct: 30 DIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPK 89
Query: 75 AQVARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAH 134
A ++A S P +
Sbjct: 90 A----------------------------------------ELAAASLKRIFPLMDATGV 109
Query: 135 HTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGVNYFK 194
SI H +V D K
Sbjct: 110 KLSIPMIGH-------------------------------KLVNEEAQHKDFDRLRALIK 138
Query: 195 QFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQV-------ELIKKGETKCYE 247
+ ++ +D+R +R + + +I + G++ + + + CY
Sbjct: 139 EHDIIFLLVDSRESRWLPSLLSNIENKTVI-NAALGFDSYLVMRHGNRDEQSSKQLGCYF 197
Query: 248 C----DPKPAAKTYPGC 260
C P +
Sbjct: 198 CHDVVAPTDSLTDRTLD 214
>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc
binding, metal binding protein; 3.00A {Saccharomyces
cerevisiae} PDB: 3vh2_A
Length = 598
Score = 101 bits (254), Expect = 1e-22
Identities = 45/255 (17%), Positives = 76/255 (29%), Gaps = 81/255 (31%)
Query: 15 DLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSK 74
D+IK +KVL++GAG +GC + + L+ G I VD T+ SN RQ L++ + GK K
Sbjct: 323 DIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPK 382
Query: 75 AQVARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAH 134
A ++A S P +
Sbjct: 383 A----------------------------------------ELAAASLKRIFPLMDATGV 402
Query: 135 HTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGVNYFK 194
SI H +V D K
Sbjct: 403 KLSIPMIGH-------------------------------KLVNEEAQHKDFDRLRALIK 431
Query: 195 QFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQV-------ELIKKGETKCYE 247
+ ++ +D+R +R + + +I + G++ + + + CY
Sbjct: 432 EHDIIFLLVDSRESRWLPSLLSNIENKTVI-NAALGFDSYLVMRHGNRDEQSSKQLGCYF 490
Query: 248 C-DPK-PAAKTYPGC 260
C D P
Sbjct: 491 CHDVVAPTDSLTDRT 505
>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein
structure, MCCC7, peptide antibiotics, N-P bond
formation, transferase; HET: ATP; 1.90A {Escherichia
coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A
Length = 353
Score = 97.5 bits (243), Expect = 5e-22
Identities = 49/258 (18%), Positives = 80/258 (31%), Gaps = 93/258 (36%)
Query: 17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQ 76
+K +KV+++G GGIG + L SG I ++D D I+ +NL RQ LF + VGK+K
Sbjct: 116 LKNAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKT- 174
Query: 77 VARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHT 136
+V + L N + ++
Sbjct: 175 ---------------------------------------EVIKRELLKRNSEISVSEIAL 195
Query: 137 SIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGVNYFKQF 196
+I D + +
Sbjct: 196 NI---------------------------------NDYTDLH-------------KVPEA 209
Query: 197 TLVMNALDNR-AARNHVNRMCLASEVPLIESGTAGYEGQV-ELIKKGETKCYEC-----D 249
+ + + D+ N VN+ C+ + P I +G L G+T CYEC D
Sbjct: 210 DIWVVSADHPFNLINWVNKYCVRANQPYINAGYVNDIAVFGPLYVPGKTGCYECQKVVAD 269
Query: 250 PKPAAKTYPGCTIRNTPS 267
+ K I+ S
Sbjct: 270 LYGSEKENIDHKIKLINS 287
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein
complex, THIF, TRAN biosynthetic protein complex; 1.98A
{Escherichia coli} PDB: 1zfn_A* 1zkm_A
Length = 251
Score = 91.0 bits (227), Expect = 1e-20
Identities = 49/249 (19%), Positives = 81/249 (32%), Gaps = 95/249 (38%)
Query: 17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQ 76
+ S+VL++G GG+G L +G + + D D + +SNL RQ LF + + + K+Q
Sbjct: 26 LLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQ 85
Query: 77 VARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHT 136
V++ R + LN PD + A
Sbjct: 86 VSQ--------------------------------------QRLTQLN--PDIQLTALQQ 105
Query: 137 SIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGVNYFKQF 196
L + +
Sbjct: 106 ------RLT---------------------------GEALKD-------------AVARA 119
Query: 197 TLVMNALDNRAARNHVNRMCLASEVPLIESGTA-GYEGQVELIK-KGETKCYEC---DPK 251
+V++ DN A R +N C+A PLI + +A G+ GQ+ ++ E CY C D +
Sbjct: 120 DVVLDCTDNMATRQEINAACVALNTPLI-TASAVGFGGQLMVLTPPWEQGCYRCLWPDNQ 178
Query: 252 PAAKTYPGC 260
C
Sbjct: 179 EPE---RNC 184
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann
fold, (2) Cys-X-X-Cys zinc-binding M MOAD:
ubiquitin-like fold; 1.70A {Escherichia coli} SCOP:
c.111.1.1 PDB: 1jwa_B* 1jwb_B*
Length = 249
Score = 89.9 bits (224), Expect = 3e-20
Identities = 59/249 (23%), Positives = 89/249 (35%), Gaps = 95/249 (38%)
Query: 17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQ 76
+K S+VL+VG GG+GC + L +G N+ ++D DT+ +SNL RQ L
Sbjct: 29 LKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHS---------- 78
Query: 77 VARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHT 136
DA + G+ K + AR++ NP I +
Sbjct: 79 -----------DATV-------------------GQPKVESARDALTRINPHIAITPVNA 108
Query: 137 SIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGVNYFKQF 196
L+ DA + A +
Sbjct: 109 ------LLD---------------------------DAELAAL-------------IAEH 122
Query: 197 TLVMNALDNRAARNHVNRMCLASEVPLIESGTA-GYEGQVELIKKGETK-CYEC---DPK 251
LV++ DN A RN +N C A++VPL+ SG A EGQ+ + + + CY C
Sbjct: 123 DLVLDCTDNVAVRNQLNAGCFAAKVPLV-SGAAIRMEGQITVFTYQDGEPCYRCLSRLFG 181
Query: 252 PAAKTYPGC 260
A C
Sbjct: 182 ENA---LTC 187
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 77.6 bits (190), Expect = 9e-15
Identities = 90/562 (16%), Positives = 164/562 (29%), Gaps = 173/562 (30%)
Query: 39 VLSGFSNIEIVDLDTIDVSNLNRQFLFHKQ--HVGKSKAQVARNSALNF----NPDANIY 92
+LS F + + + D DV ++ + L ++ H+ SK V+ L F + +
Sbjct: 21 ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL-FWTLLSKQEEMV 79
Query: 93 YQ-VDFHL--NRQFL---FHKQHVGKSKAQVARNSALN--FNPDANIVAHHTSIIRFLHL 144
+ V+ L N +FL + S + +N D + A + ++
Sbjct: 80 QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN-DNQVFAKY-------NV 131
Query: 145 NRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGVNYF-KQFTLVMNAL 203
+R + K R + L P N++ GV K + ++
Sbjct: 132 SRLQPYLK----------LRQALLELRPAKNVLID---------GVLGSGKT-WVALDVC 171
Query: 204 DNRAARNHVNRMCLASEVPLIESGTAGYEGQVE-LIKKGETKCYECDPKPAAKTYPGCTI 262
++ + + ++ + E +++ + Y+ DP +
Sbjct: 172 -----LSYKVQCKMDFKIFWL---NLKNCNSPETVLEMLQKLLYQIDP-------NWTSR 216
Query: 263 RNTPSEPIHCIVWAKHLFNYLERLMLMKRCPLILKIQKLLERLSAMNVIRSQLPKLIQAV 322
+ S I + L + + C L+L NV Q K A
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL-----------NV---QNAKAWNAF 262
Query: 323 QLG--ILRLNPFTVLSGLNICSSDAGAKAAASEATANGDVVRTSTRAWASACGYDPRK-- 378
L IL + + S AT + + P +
Sbjct: 263 NLSCKIL------------LTTRFKQVTDFLSAATTT--HISLDHHSM----TLTPDEVK 304
Query: 379 -LFAKFFDADIRYLISMSDLWKTRKAPQ--PLVWDTLSDAVAGSSKETDGGGLKDQRVWS 435
L K+ D DL R+ P LS + S DG D W
Sbjct: 305 SLLLKYLD------CRPQDL--PREVLTTNPRR---LS--IIAESIR-DGLATWDN--WK 348
Query: 436 VAEC---ARVFERSVR-----ELKTKFDA-AV-EKDEH-------LVW-DKDDKPAMDFV 477
C + E S+ E + FD +V H L+W D M V
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV 408
Query: 478 AACANIRAHVFSIPEKSRFDIKSMAGNIIPAIATSNAIVAGLVVLHAIHVLQARFSSCQT 537
H +S+ EK + + + +I++
Sbjct: 409 NKL-----HKYSLVEKQPKE--------------------STISIPSIYLE--------- 434
Query: 538 VYLRKKPNHRDQM---IVPEKY 556
L+ K + + IV + Y
Sbjct: 435 --LKVKLENEYALHRSIV-DHY 453
Score = 53.7 bits (128), Expect = 2e-07
Identities = 78/508 (15%), Positives = 153/508 (30%), Gaps = 138/508 (27%)
Query: 13 LEDLIKKSKVLVVGAGGIGCELLKN-LVLSGFSNIEIVDLDT-----IDVSNLNR----- 61
L +L VL+ G G G K + L + ++ +++ N N
Sbjct: 144 LLELRPAKNVLIDGVLGSG----KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199
Query: 62 ---QFLFHKQHVGKSKAQVARNSALNFNPDANIYYQVDF---HLNRQFLFHKQHVGKSKA 115
Q L + Q+ N + +NI ++ L R L K +
Sbjct: 200 EMLQKLLY---------QIDPNWTSRSDHSSNIKLRIHSIQAELRR-LLKSKPY------ 243
Query: 116 QVARNSALNFNPDANIVAH--HTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPD 173
N L ++ + + +L+ + L R + +
Sbjct: 244 ---ENCLL-------VLLNVQNAKAWNAFNLSCKILL-----------TTRFKQV-TDFL 281
Query: 174 ANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEV----PL------ 223
+ H S+ + + +L++ LD R L EV P
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ-------DLPREVLTTNPRRLSIIA 334
Query: 224 --IESGTAGYEG--QVELIKKGET--KCYEC-DPKPAAKTYPGCTI--RNTP-SEPIHCI 273
I G A ++ V K +P K + ++ + + +
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL 394
Query: 274 VWAKHLFNYLERLM--LMKRCPLILKIQKLLERLSAMNVIRSQLPKLIQAVQLGILRLNP 331
+W + + + ++ L K L+ K Q +S ++ KL L ++
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYS-LVEK-QPKESTISIPSIYLELKVKLENEYALHRSIVDH 452
Query: 332 FTVLSGLNICSSDAGAKAAASEATANGDVVRTSTRAWASACGY--------DPRKLFAKF 383
+ + S D D + + S G+ + LF
Sbjct: 453 YNIPKTF--DSDDLIPPYL--------D------QYFYSHIGHHLKNIEHPERMTLFRMV 496
Query: 384 FDADIRYLISMSDLWKTRKAPQPLVWDTLSDAVAGSSKETDGGGLKDQRVWS--VAECAR 441
F D R+L +K + D+ + +GS T L+ + + + +
Sbjct: 497 F-LDFRFL--------EQK----IRHDSTAWNASGSILNT----LQQLKFYKPYICDNDP 539
Query: 442 VFERSVRELKTKFDAAVEKDEHLVWDKD 469
+ER V + F +E E+L+ K
Sbjct: 540 KYERLVNAIL-DFLPKIE--ENLICSKY 564
Score = 44.8 bits (105), Expect = 1e-04
Identities = 61/508 (12%), Positives = 127/508 (25%), Gaps = 179/508 (35%)
Query: 247 ECD-----PKPAAKTYP--GCTIRNTPSEPIHCIVWAKHLFNY---LERLMLMKRCPLIL 296
E D + T + + E + V NY + + +R P ++
Sbjct: 50 EIDHIIMSKDAVSGTLRLFWT-LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMM 108
Query: 297 ---------KIQKLLERLSAMNVIRSQLPKLIQAVQLGILRLNP--FTVLSGLNICSSDA 345
++ + + NV R + ++ +L L P ++ G+
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSR---LQPYLKLRQALLELRPAKNVLIDGV------L 159
Query: 346 GA-KAA-ASEATANGDVVRTSTRA--WASACGYDPRKLFAKFFDADIRYLISMSDLWKTR 401
G+ K A + + V W + + L + L +
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIFWLN---------LKNCNSPETV-LEMLQKLL-YQ 208
Query: 402 KAPQPLVWDTLSDAVAGSSKETDGGGLKDQRVWSVAECARVFERSVRELKTKFDAAVEKD 461
P W + SD + + +R+ ++ +E + L
Sbjct: 209 IDPN---WTSRSDHSSNIKLRIHSIQAELRRLLK----SKPYENCLLVL----------L 251
Query: 462 EHLVWDKDDKPAMDFVAAC----------------ANIRAHVFSIPEKSRF--------- 496
V + A + +C A H+
Sbjct: 252 N--VQNAKAWNAFNL--SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307
Query: 497 ---------DIKSMAGNIIP-AIATSNAIVAGLVVLHAIHVLQARFSSCQTVYLRKKPNH 546
D+ P + +I+A +R
Sbjct: 308 LKYLDCRPQDLPREVLTTNPRRL----SIIAES--------------------IRDGLAT 343
Query: 547 RDQMIVPEKYLTAPNPTCPVCSPKPQRTIGLDVTKMTVAEFEE-----AVLKKTLNMSAM 601
D K++ K I + + AE+ + +V + ++ +
Sbjct: 344 WDNW----KHVN---------CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI 390
Query: 602 V--------------DVMVE-ASGSVIISSEEGET------------EANNDKPLEHGLI 634
+ V+ + S++ + T + N+ L H I
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL-HRSI 449
Query: 635 ISHRVSARDGPEFEILDQKDLPQPPAPD 662
+ H + D DL PP D
Sbjct: 450 VDHYNIPKT------FDSDDLI-PPYLD 470
Score = 44.5 bits (104), Expect = 1e-04
Identities = 50/327 (15%), Positives = 102/327 (31%), Gaps = 61/327 (18%)
Query: 6 PGVFEKDLEDLIKKSKVLVVGAGGIGCELLKN--LVLSGFSNIEIVDLDTIDVSNLNRQF 63
+ +++ L+ K L + E+L LS + L T D N
Sbjct: 296 MTLTPDEVKSLL--LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD--NW---- 347
Query: 64 LFHKQHVGKSKAQVARNSALN----------------FNPDANIYYQVDFHLNRQFLFH- 106
+HV K S+LN F P A+I + L ++
Sbjct: 348 ----KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL---L--SLIWFD 398
Query: 107 --KQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFL-HLNRQFLFHKQHVGKSKAQVA 163
K V ++ + S + P + ++ + + L ++ H+ V
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT 458
Query: 164 RNSALNFNPDA------NIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCL 217
+S + P + + HH I + F+ L L+ + +
Sbjct: 459 FDSD-DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNAS 517
Query: 218 ASEVPLIESGTAGYEGQVELIKKGETKCYECDPKPAAKTYPGCTIRNTPSEPIHCIVWAK 277
S + + Q++ K Y CD P + + P + I +K
Sbjct: 518 GSILNTL--------QQLKFYKP-----YICDNDPKYERLVNAILDFLPKIEENLIC-SK 563
Query: 278 HLFNYLERLMLMKRCPLILKIQKLLER 304
+ + L ++ + + + K ++R
Sbjct: 564 YT-DLLRIALMAEDEAIFEEAHKQVQR 589
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 73.5 bits (180), Expect = 2e-13
Identities = 105/631 (16%), Positives = 167/631 (26%), Gaps = 252/631 (39%)
Query: 35 LKNLVLS-GFSNIEIVDLDTIDVSN--------LNRQFLFHKQHVGKSKAQVARNSALNF 85
+ L LS G ++E + V L QF K + A +
Sbjct: 6 TRPLTLSHG--SLEH----VLLVPTASFFIASQLQEQFN-------KILPEPTEGFAADD 52
Query: 86 NPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFL--H 143
P L +FL + V+ + + V ++
Sbjct: 53 EPTTPA------ELVGKFLGY----------VSSLV------EPSKVGQFDQVLNLCLTE 90
Query: 144 LNRQFLFHKQ-HVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNA 202
+L H A A+ L D +V +I NY
Sbjct: 91 FENCYLEGNDIH-----ALAAK---LLQENDTTLVKTK-ELIK-----NYI--------- 127
Query: 203 LDNRAARNHVNR-MCLASEVPLIESGTAG----YE---GQVELIKKGET--------KCY 246
AR R S L + G GQ G T Y
Sbjct: 128 ----TARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQ------GNTDDYFEELRDLY 177
Query: 247 ECDPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNYLERLMLMKR-CPLILKIQKLLER- 304
+ TY + I A+ L + + ++ L I + LE
Sbjct: 178 Q--------TYHVLV-----GDLIKFS--AETLSELIRTTLDAEKVFTQGLNILEWLENP 222
Query: 305 --------LSAMNVIRSQLPKLIQAVQLG-------ILRLNP---FTVLSGLNICSSDAG 346
L ++ + S P LI +QL +L P + L G S G
Sbjct: 223 SNTPDKDYLLSIPI--S-CP-LIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHS--QG 276
Query: 347 AKAAASEATANGDVVRTSTRAWASACGYDPRKLFAKFFDADIRYLISMSDLW----KTRK 402
A A A D +W S FF + + + + +
Sbjct: 277 LVTAV--AIAETD-------SWES------------FFVSVRKAITVL--FFIGVRCYEA 313
Query: 403 APQPLVWDTLSDAVAGSSKETDGGG----LKDQRVWSVAECARVFERSVRELKTKFDAAV 458
P +L ++ S E + G L S+ L V
Sbjct: 314 YPNT----SLPPSILEDSLENNEGVPSPML-----------------SISNLT---QEQV 349
Query: 459 EKDEHLVWDKDDKPAMDFVAACANIRAHVFSIPEKSRFDIKSMAGNIIPAIATSNAIVAG 518
+ +V +H+ P + +I S+ N N +V+G
Sbjct: 350 QD---------------YVNKT---NSHL---PAGKQVEI-SLV-N-----GAKNLVVSG 381
Query: 519 LVV-LHAIHVLQARFSSCQTVYLRKK--PNHRDQMIVP---EK------YLTAPNP-TCP 565
L+ ++ + LRK P+ DQ +P K +L P P
Sbjct: 382 PPQSLYGLN-----------LTLRKAKAPSGLDQSRIPFSERKLKFSNRFL----PVASP 426
Query: 566 VCSP--KP-QRTIGLDVTKMTVAEFEEAVLK 593
S P I D+ K V F ++
Sbjct: 427 FHSHLLVPASDLINKDLVKNNV-SFNAKDIQ 456
Score = 39.6 bits (92), Expect = 0.004
Identities = 47/257 (18%), Positives = 73/257 (28%), Gaps = 111/257 (43%)
Query: 1 MATKIPGVFEKDLEDLIKK--------SKV---LVVGAGGIGCELLKNLVLSGFSNIEIV 49
M + I + ++ ++D + K +V LV GA KNLV+SG
Sbjct: 338 MLS-ISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGA--------KNLVVSGPP----Q 384
Query: 50 DLDTIDVSNLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIYY---QVDFHLNRQFL-- 104
L LN K Q + I + ++ F +FL
Sbjct: 385 SLY-----GLNLT--LRKAKAPSGLDQ------------SRIPFSERKLKFSN--RFLPV 423
Query: 105 ---FHKQHVGKSKAQV---ARNSALNFNP-DANIVAHHT-----------SIIRFL---- 142
FH + + + + ++FN D I + T SI +
Sbjct: 424 ASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCI 483
Query: 143 -----HLNRQFLFHKQHV-----GKSKAQ---VARN-----------SALNFNPDANIVA 178
F H+ G + RN L+ NPD
Sbjct: 484 IRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPD----- 538
Query: 179 HHTSIISADFGVNYFKQ 195
D+G FKQ
Sbjct: 539 -------DDYG---FKQ 545
Score = 37.3 bits (86), Expect = 0.021
Identities = 55/309 (17%), Positives = 92/309 (29%), Gaps = 106/309 (34%)
Query: 42 GFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARN--SALNF--NPDAN-----IY 92
GFS ++IV + ++++ F G K + R SA+ F D I+
Sbjct: 1658 GFSILDIVINNPVNLT-----IHF-----GGEKGKRIRENYSAMIFETIVDGKLKTEKIF 1707
Query: 93 YQVDFHLN-------RQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLN 145
+++ H + L Q Q A + F L
Sbjct: 1708 KEINEHSTSYTFRSEKGLLSATQF-----TQPA------------LTL--MEKAAFEDLK 1748
Query: 146 RQFLFHKQHVGKSKAQVA-----RNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVM 200
+ L + A A +AL A ++S + V +V
Sbjct: 1749 SKGLI------PADATFAGHSLGEYAAL---------ASLADVMSIESLVE------VV- 1786
Query: 201 NALDNRAARNHVNRMCLASEVPLIESGTAGY------EGQVELIKKGETKCYECDPKPAA 254
R M + VP E G + Y G+V E Y + +
Sbjct: 1787 ------FYRG----MTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVE-RVGK 1835
Query: 255 KTYPGCTI--RNTPSEPIHCIVWAKH------LFNYLERLMLMKRCPLILKIQKLLERLS 306
+T I N ++ V A + N L + L K + I +L + LS
Sbjct: 1836 RTGWLVEIVNYNVENQ---QYVAAGDLRALDTVTNVLNFIKLQK-----IDIIELQKSLS 1887
Query: 307 AMNVIRSQL 315
+ + L
Sbjct: 1888 -LEEVEGHL 1895
>3h4z_A Maltose-binding periplasmic protein fused with Al DERP7; MBP
fusion, AHA1/BPI domain-like, super roll, sugar T
transport, allergen; HET: GLC; 2.35A {Escherichia coli}
Length = 568
Score = 37.9 bits (88), Expect = 0.012
Identities = 6/48 (12%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 11 KDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSN 58
D D ++ ++ G + ++N+ + G ++ V + +
Sbjct: 405 PDHSDKFERHIGIIDLKGEL---DMRNIQVRGLKQMKRVGDANVKSED 449
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.12
Identities = 9/24 (37%), Positives = 11/24 (45%), Gaps = 4/24 (16%)
Query: 232 EGQVELIKKGET--KCYECDPKPA 253
E Q +KK + K Y D PA
Sbjct: 18 EKQA--LKKLQASLKLYADDSAPA 39
Score = 29.1 bits (64), Expect = 3.3
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 16/38 (42%)
Query: 691 KK--RKVDSS-----DESLPAKKVRTDEKSTDKVPEVE 721
K+ +K+ +S D+S PA + K+T +E
Sbjct: 19 KQALKKLQASLKLYADDSAPALAI----KAT-----ME 47
Score = 28.4 bits (62), Expect = 5.1
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 10/32 (31%)
Query: 492 EKSRFDIKSMAGNI-------IPAIATSNAIV 516
EK +K + ++ PA+A A +
Sbjct: 18 EKQ--ALKKLQASLKLYADDSAPALAI-KATM 46
>3ic5_A Putative saccharopine dehydrogenase; structural genomics,
APC63807.2, N-terminal domain, saccharo dehydrogenase,
PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Length = 118
Score = 32.5 bits (74), Expect = 0.12
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 18 KKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFL 64
+ + VVGAG IG + L S ++ + D D ++ LNR +
Sbjct: 4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGV 50
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain,
NAD, RCK domain, potassium transport, potassium
channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus
jannaschii} SCOP: c.2.1.9
Length = 140
Score = 32.1 bits (74), Expect = 0.22
Identities = 10/43 (23%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQF 63
+++ G G +G L K+L G +I ++D+D + +
Sbjct: 6 YIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAEI 47
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein,
lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A
{Dictyostelium discoideum} PDB: 2uuv_A*
Length = 584
Score = 33.6 bits (77), Expect = 0.25
Identities = 4/27 (14%), Positives = 9/27 (33%), Gaps = 2/27 (7%)
Query: 354 ATANGDVVRTSTRAWASACGYDPRKLF 380
T G + + S G + + +
Sbjct: 270 VTPTGTLELRNGAR--SGAGINYKHII 294
>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A
{Thermotoga maritima}
Length = 253
Score = 32.9 bits (76), Expect = 0.26
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 9 FEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIV 49
K LE + K V+VVGAGG ++ L+ G +I +V
Sbjct: 98 VVKSLEGVEVKEPVVVVGAGGAARAVIYALLQMGVKDIWVV 138
>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate
metabolism, stress response; HET: NAP ADP BMA; 2.36A
{Escherichia coli} PDB: 2x86_A*
Length = 357
Score = 33.0 bits (76), Expect = 0.29
Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 10/91 (10%)
Query: 12 DLEDLIKKSKVLVVGAGG-IGCELLKNLVLSGFSNIEIVD-LDTID-VSNLNRQFLFHKQ 68
I+ ++V G G IG ++K L G ++I +VD L NL +
Sbjct: 39 GGGSGIEGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLNIADYM 98
Query: 69 HVGKSKAQVARNSALNFNPDANIYYQVDFHL 99
Q+ + +A + FH
Sbjct: 99 DKEDFLIQIMAGEEFG-DVEA-----I-FHE 122
>3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein,
N-glycan biosynthesis, bacillosamine, structural
genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni}
SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A*
2npo_A
Length = 194
Score = 32.6 bits (75), Expect = 0.29
Identities = 23/142 (16%), Positives = 45/142 (31%), Gaps = 22/142 (15%)
Query: 18 KKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQH----VG-- 71
+ K+ + GA G G G+ +D D + + K +G
Sbjct: 2 RTEKIYIYGASGHGLVCEDVAKNMGYKECIFLD----DFKGMKFESTLPKYDFFIAIGNN 57
Query: 72 ---KSKAQVARNSALNF----NPDANIYYQVDFHLNRQ-FLFHKQHVGKSKAQVARNSAL 123
K Q + + A I N + + +KA++ + L
Sbjct: 58 EIRKKIYQKISENGFKIVNLIHKSALISPSAIVEENAGILIMPYVVIN-AKAKIEKGVIL 116
Query: 124 NFNPDANIVAHHTSIIRFLHLN 145
N + +++ H I F H++
Sbjct: 117 NTS---SVIEHECVIGEFSHVS 135
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A
{Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A
1pl6_A* 3qe3_A
Length = 356
Score = 32.9 bits (76), Expect = 0.31
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52
KVLV GAG IG L G + + + DL
Sbjct: 173 HKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLS 205
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid
cycle, structural genomics; HET: ADP; 2.25A {Brucella
melitensis biovar ABORTUS2308} PDB: 3gvh_A*
Length = 324
Score = 32.9 bits (76), Expect = 0.33
Identities = 8/39 (20%), Positives = 19/39 (48%)
Query: 14 EDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52
+ ++K+ ++G+G IG L L ++ + D+
Sbjct: 2 PGSMARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIA 40
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase;
HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5
d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A
2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A*
1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*
Length = 322
Score = 32.9 bits (76), Expect = 0.33
Identities = 9/37 (24%), Positives = 21/37 (56%)
Query: 16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52
+ K+K+++VG+G IG + +V ++ + D+
Sbjct: 1 MAPKAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIV 37
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase;
1.60A {Medicago sativa}
Length = 307
Score = 32.6 bits (74), Expect = 0.40
Identities = 8/32 (25%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 19 KSKVLVVGAGG-IGCELLKNLVLSGFSNIEIV 49
++K+L++G G IG ++ + +G +V
Sbjct: 2 ENKILILGPTGAIGRHIVWASIKAGNPTYALV 33
>3tl2_A Malate dehydrogenase; center for structural genomics of
infectious diseases, csgid dehydrogenase,
oxidoreductase, citric acid cycle; 1.70A {Bacillus
anthracis}
Length = 315
Score = 32.5 bits (75), Expect = 0.41
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTID 55
IK+ KV V+GAG G L +++ +VD+ ++
Sbjct: 6 IKRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQLE 44
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog
complex, oxidoreductase; HET: A3D; 2.00A
{Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A*
2fm3_A
Length = 317
Score = 32.5 bits (75), Expect = 0.47
Identities = 8/37 (21%), Positives = 21/37 (56%)
Query: 16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52
+I++ K+ V+G+G IG + + +++ + D+
Sbjct: 1 MIERRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIA 37
>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase,
oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A
{Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*
Length = 366
Score = 32.4 bits (74), Expect = 0.48
Identities = 10/32 (31%), Positives = 11/32 (34%)
Query: 21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52
KVLVVG G IG G +
Sbjct: 183 KVLVVGTGPIGVLFTLLFRTYGLEVWMANRRE 214
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural
genomics, center structural genomics of infectious
diseases, csgid; 2.20A {Francisella tularensis}
Length = 321
Score = 32.5 bits (75), Expect = 0.49
Identities = 9/36 (25%), Positives = 19/36 (52%)
Query: 17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52
+ + K+ +VGAG IG L ++ ++ + D+
Sbjct: 3 MARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIA 38
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center
for structural genomics, J protein structure
initiative, PSI-2; HET: AMP; 1.50A {Thermotoga
maritima} PDB: 3l4b_A*
Length = 155
Score = 31.0 bits (71), Expect = 0.56
Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQF 63
+++ G G +G + SG ++ +VD + LN +F
Sbjct: 21 YIVIFGCGRLGSLIANLASSSGH-SVVVVDKNEYAFHRLNSEF 62
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, plant protein; HET: NDP; 1.50A
{Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A*
3c3x_A* 2qw8_A*
Length = 318
Score = 31.8 bits (72), Expect = 0.68
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 19 KSKVLVVGAGG-IGCELLKNLVLSGFS 44
KSK+L+ G G IG ++K + G
Sbjct: 11 KSKILIFGGTGYIGNHMVKGSLKLGHP 37
>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold,
amino-acid biosynthesis, amino acid biosynthesis, NADP,
oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB:
3doo_A*
Length = 277
Score = 31.7 bits (73), Expect = 0.72
Identities = 8/44 (18%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 9 FEKDLEDL---IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIV 49
+ L+ + I+ + +L++GAGG + L + +
Sbjct: 104 YVNGLKQIYEGIEDAYILILGAGGASKGIANELYKIVRPTLTVA 147
>4g65_A TRK system potassium uptake protein TRKA; structural genomics,
center for structural genomics of infec diseases,
csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Length = 461
Score = 31.8 bits (73), Expect = 0.73
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQF 63
K++++GAG +G L +NLV +I IVD D + L ++
Sbjct: 5 KIIILGAGQVGGTLAENLVGENN-DITIVDKDGDRLRELQDKY 46
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural
genomics consortium, SGC, oxidoreductase; HET: CIT APR;
2.20A {Cryptosporidium parvum}
Length = 328
Score = 31.7 bits (73), Expect = 0.82
Identities = 9/37 (24%), Positives = 19/37 (51%)
Query: 16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52
+I + K+ ++GAG IG + L ++ + D+
Sbjct: 11 VIMRKKISIIGAGQIGSTIALLLGQKDLGDVYMFDII 47
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics,
PSI-2, protein structure initiative, MI center for
structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A
{Vibrio fischeri} PDB: 3pvz_A*
Length = 399
Score = 31.6 bits (72), Expect = 0.83
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 10 EKDLEDLIKKSKVLVVGAGG-IGCELLKNLVLSGFSNIEIVDL 51
EK+L+ ++ +S+ LV+G G IG + K + + +VD+
Sbjct: 26 EKELQSVVSQSRFLVLGGAGSIGQAVTKEIFKRNPQKLHVVDI 68
>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}
Length = 363
Score = 31.4 bits (72), Expect = 0.88
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52
VL+ GAG IG + +G + I D+D
Sbjct: 181 DPVLICGAGPIGLITMLCAKAAGACPLVITDID 213
>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis;
HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP:
a.151.1.1 c.2.1.7 d.58.39.1
Length = 404
Score = 31.4 bits (72), Expect = 0.93
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 10 EKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIV 49
E++L L VLVVGAG +G + K+LV G + +
Sbjct: 159 ERELGSL-HDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVA 197
>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase,
GDP-gulose, GDP-galactose, keto intermediate, vitamin
C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana}
SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*
Length = 379
Score = 31.2 bits (71), Expect = 1.1
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 18 KKSKVLVVGAGG-IGCELLKNLVLSGFSNIEIVDL 51
+ K+ + GAGG I + + L G I D
Sbjct: 28 ENLKISITGAGGFIASHIARRLKHEGHYVI-ASDW 61
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann
fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma
gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A*
1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*
Length = 331
Score = 31.4 bits (72), Expect = 1.1
Identities = 8/36 (22%), Positives = 19/36 (52%)
Query: 17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52
++ KV ++G+G IG + L +++ + D+
Sbjct: 7 QRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVV 42
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit;
flavoprotein, electron-transfer, FAD, oxidoreductase;
HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1
d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Length = 520
Score = 31.5 bits (72), Expect = 1.1
Identities = 8/26 (30%), Positives = 10/26 (38%)
Query: 355 TANGDVVRTSTRAWASACGYDPRKLF 380
ANGDV RT + + K
Sbjct: 188 LANGDVYRTGMGGVPGSNTWQIFKWG 213
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc,
PSI-biology, NEW YORK structura genomics research
consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Length = 370
Score = 31.4 bits (72), Expect = 1.2
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52
S V ++G G IG ++ L+G + + +
Sbjct: 184 STVAILGGGVIGLLTVQLARLAGATTVILSTRQ 216
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, oxidoreductase; HET: NAP;
1.80A {Clarkia breweri}
Length = 321
Score = 31.1 bits (70), Expect = 1.2
Identities = 5/32 (15%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 19 KSKVLVVGAGG-IGCELLKNLVLSGFSNIEIV 49
K+++ G G IG +++ +
Sbjct: 4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYA 35
>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine
reductase fold (domain II), alpha/beta protein; 1.70A
{Saccharomyces cerevisiae}
Length = 467
Score = 31.3 bits (70), Expect = 1.2
Identities = 6/34 (17%), Positives = 15/34 (44%)
Query: 19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52
VL++G+G + ++ L + N+ +
Sbjct: 23 GKNVLLLGSGFVAQPVIDTLAANDDINVTVACRT 56
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus
thermophilus}
Length = 219
Score = 30.5 bits (69), Expect = 1.3
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 355 TANGDVVRTSTRAWASACGYDPRKLFA 381
T G VR + GYD +LF
Sbjct: 69 TPKGRRVRAGGVVVKNVQGYDLVRLFV 95
>3sqn_A Conserved domain protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, MGA family; 2.31A
{Enterococcus faecalis}
Length = 485
Score = 31.0 bits (70), Expect = 1.4
Identities = 4/54 (7%), Positives = 17/54 (31%), Gaps = 4/54 (7%)
Query: 9 FEKDLEDLIKKSK-VLVVGAGGIG-CELLKNLVLSGFSNIEIVDLDTIDVSNLN 60
++ + + ++ + G L+ + + + I+ L+
Sbjct: 387 EKQAIYSIQAQTMTAYFLFQGEPAWKAFLQQELAAYLGTRVKL--QAIEYVELS 438
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase,
rubredoxin reductas NAD, flavoprotein, oxidoreductase;
HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Length = 384
Score = 31.0 bits (71), Expect = 1.4
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 8/47 (17%)
Query: 6 PGVFE-KDLED-------LIKKSKVLVVGAGGIGCELLKNLVLSGFS 44
++ DLED K +VL++GAG IGCE +L G+
Sbjct: 124 DALYPINDLEDYARFRQAAAGKRRVLLLGAGLIGCEFANDLSSGGYQ 170
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping
sickness, flavoPro redox-active center; HET: FAD WPF;
1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A*
2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A*
1bzl_A* 1aog_A*
Length = 495
Score = 30.6 bits (70), Expect = 1.8
Identities = 10/40 (25%), Positives = 13/40 (32%), Gaps = 7/40 (17%)
Query: 7 GVFEKDLEDLIKKSKVLVVGAGGIGCEL---LKNLVLSGF 43
F L + ++ VL VG G I E G
Sbjct: 183 EAF--YLPEPPRR--VLTVGGGFISVEFAGIFNAYKPPGG 218
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase,
flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia
fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A*
1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A*
2x50_A* 2ve2_A*
Length = 490
Score = 30.6 bits (70), Expect = 1.8
Identities = 10/40 (25%), Positives = 13/40 (32%), Gaps = 7/40 (17%)
Query: 7 GVFEKDLEDLIKKSKVLVVGAGGIGCEL---LKNLVLSGF 43
F L++ K+ L VG G I E G
Sbjct: 179 EAF--YLDEAPKR--ALCVGGGYISIEFAGIFNAYKARGG 214
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein,
FAD, mitochondrion, redox-active center, selenium,
selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus
musculus} PDB: 1zkq_A* 1zdl_A*
Length = 488
Score = 30.6 bits (70), Expect = 1.9
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 10/40 (25%)
Query: 3 TKIPGVFEK--------DLEDLIKKSKVLVVGAGGIGCEL 34
T++ G E L++ K LVVGA + E
Sbjct: 163 TQVKGALEYGITSDDIFWLKESPGK--TLVVGASYVALEC 200
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic
alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.50A {Thuja plicata}
SCOP: c.2.1.2
Length = 313
Score = 30.3 bits (68), Expect = 2.0
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 18 KKSKVLVVGAGG-IGCELLKNLVLSGFSNIEIV 49
KKS+VL+VG G IG ++ + G +
Sbjct: 3 KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLF 35
>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG
KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A
{Flavobacterium frigidimaris}
Length = 312
Score = 30.3 bits (69), Expect = 2.1
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 19 KSKVLVVGAGG-IGCELLKNLV-LSGFSNIEIVDLDTIDVSNLNRQFLFHK 67
K+L++GA G IG EL + L L G N+ D+ ++ +N F
Sbjct: 2 NPKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTDVVNS-GPFEV 51
>2zw2_A Putative uncharacterized protein STS178; purine metabolism, ligase;
1.55A {Sulfolobus tokodaii}
Length = 92
Score = 28.4 bits (64), Expect = 2.1
Identities = 8/53 (15%), Positives = 18/53 (33%), Gaps = 10/53 (18%)
Query: 194 KQFTLVMNALDNRAARNHVNRMC----LASEVPLIESGTAGYEGQVELIKKGE 242
K +N+ + A V ++ L + P++ E + I+
Sbjct: 45 KYLVFRVNSSSQQEATELVKKLADEMRLYN--PIVHK----IEIRANRIEDSS 91
>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics,
metal-binding, oxidoreductase, PSI-2, protein structure
initiative; 2.09A {Thermotoga maritima}
Length = 404
Score = 30.4 bits (69), Expect = 2.1
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52
V+++G G IG + L +G S + + +
Sbjct: 215 DNVVILGGGPIGLAAVAILKHAGASKVILSEPS 247
>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A
{Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB:
1p74_A*
Length = 272
Score = 30.2 bits (69), Expect = 2.2
Identities = 9/24 (37%), Positives = 12/24 (50%), Gaps = 3/24 (12%)
Query: 9 FEKDLEDL---IKKSKVLVVGAGG 29
DL+ L VL++GAGG
Sbjct: 106 LVTDLQRLNWLRPNQHVLILGAGG 129
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent
aromatic alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP:
c.2.1.2
Length = 308
Score = 30.2 bits (68), Expect = 2.4
Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 19 KSKVLVVGAGG-IGCELLKNLVLSGFS 44
+S++L++GA G IG + K + G
Sbjct: 4 RSRILLIGATGYIGRHVAKASLDLGHP 30
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex,
rossmann fold, HO pyridine nucleotide disulfide
oxidoreductase, electron TRAN oxidoreductase; HET: FAD;
2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A*
2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Length = 519
Score = 30.3 bits (69), Expect = 2.4
Identities = 12/38 (31%), Positives = 13/38 (34%), Gaps = 10/38 (26%)
Query: 5 IPGVFEK--------DLEDLIKKSKVLVVGAGGIGCEL 34
IPG E L K LVVGA + E
Sbjct: 190 IPGDKEYCISSDDLFSLPYCPGK--TLVVGASYVALEC 225
>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle;
HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP:
c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A*
1uxj_A* 1uxi_A*
Length = 309
Score = 30.2 bits (69), Expect = 2.5
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52
+ K+ ++GAG +G L +I ++D+
Sbjct: 2 RKKISIIGAGFVGSTTAHWLAAKELGDIVLLDIV 35
>2z2v_A Hypothetical protein PH1688; L-lysine dehydrogenase,
oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
PDB: 3a63_A* 3abi_A*
Length = 365
Score = 30.3 bits (68), Expect = 2.6
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 18 KKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52
+ KVL++GAG IG + + L ++ I D++
Sbjct: 15 RHMKVLILGAGNIGRAIAWD--LKDEFDVYIGDVN 47
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural
genomics, PSI-2, protein structure initiative; HET: FAD;
2.60A {Enterococcus faecalis}
Length = 452
Score = 30.1 bits (69), Expect = 2.6
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 8/45 (17%)
Query: 6 PGVFE-KDLED------LIKKSK-VLVVGAGGIGCELLKNLVLSG 42
+ + K L L++ S+ V V+GAG IG E + LV
Sbjct: 126 EKLLKYKFLSGALAAVPLLENSQTVAVIGAGPIGMEAIDFLVKMK 170
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short
chain dehydrogenase reductase, flavonoi oxidoreductase;
HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A*
3i6q_A*
Length = 346
Score = 30.0 bits (67), Expect = 2.7
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 19 KSKVLVVGAGG-IGCELLKNLVLSGFS 44
K +VL+ GA G IG + + +
Sbjct: 10 KGRVLIAGATGFIGQFVATASLDAHRP 36
>2x8g_A Thioredoxin glutathione reductase; redox-active center,
detoxification pathway, oxidoreductase, flavoprotein;
HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A*
2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Length = 598
Score = 30.4 bits (69), Expect = 2.7
Identities = 11/38 (28%), Positives = 13/38 (34%), Gaps = 10/38 (26%)
Query: 5 IPGVFEK--------DLEDLIKKSKVLVVGAGGIGCEL 34
IPG E L K LV+GA + E
Sbjct: 266 IPGAVEYGITSDDLFSLPYFPGK--TLVIGASYVALEC 301
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA,
persulfide reductase, rhodanese; HET: COA FAD; 1.99A
{Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Length = 565
Score = 30.3 bits (69), Expect = 2.7
Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 11/56 (19%)
Query: 6 PGVFE-KDLEDL--IKKS-------KVLVVGAGGIGCELLKNLVLSGFSNIEIVDL 51
P +++ D+ I ++ VVG G IG E++++L G +++L
Sbjct: 128 PLTHSLRNIPDMDRILQTIQMNNVEHATVVGGGFIGLEMMESLHHLGI-KTTLLEL 182
>2ftc_E L12MT, MRP-L12, 39S ribosomal protein L12, mitochondrial;
mitochondrial ribosome, large ribosomal subunit,
ribosomal R ribosome; 12.10A {Bos taurus}
Length = 137
Score = 29.0 bits (65), Expect = 2.9
Identities = 13/61 (21%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 297 KIQKLLERLSAMNVI-RSQLPKLIQAVQLGILRLNPFTVLSGLNICSSDAGAKAAASEAT 355
KIQ+L++ ++++ ++ S L +L++ L I + + + + A AA E
Sbjct: 2 KIQQLVQDIASLTLLEISDLNELLKK-TLKIQDVGLMPMGGMVPGAAPAPTAPEAAEEDV 60
Query: 356 A 356
Sbjct: 61 P 61
>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG,
PSI, protein structure initiative, joint center for S
genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2
c.2.1.1
Length = 380
Score = 29.9 bits (68), Expect = 3.2
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52
V++ GAG +G + G N+ ++
Sbjct: 197 KTVVIQGAGPLGLFGVVIARSLGAENVIVIAGS 229
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, melioidosis,
glanders; 2.10A {Burkholderia pseudomallei}
Length = 372
Score = 29.7 bits (67), Expect = 3.2
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 17 IKKSKVLVVGAGG-IGCELLKNLVLSGFSNIEIVDLDTIDVSNL--NRQFLFHKQHVGKS 73
+K KVL++G G IG L K ++ + + +D+ T + +L + + F + + +
Sbjct: 22 MKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVKHERMHFFEGDITIN 81
Query: 74 KAQV 77
K V
Sbjct: 82 KEWV 85
>1vl4_A PMBA-related protein; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PS regulation; 1.95A {Thermotoga maritima} SCOP:
d.283.1.1
Length = 447
Score = 30.0 bits (68), Expect = 3.3
Identities = 6/43 (13%), Positives = 14/43 (32%)
Query: 580 TKMTVAEFEEAVLKKTLNMSAMVDVMVEASGSVIISSEEGETE 622
MT EF++ + V + + + G+ +
Sbjct: 11 HHMTFEEFKDRLFALAKKNGVEVQISFLETREFSLRLANGDLD 53
>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for
structural genomics of infec diseases, csgid; HET: EPE;
1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A*
3pgj_A* 3o8q_B*
Length = 281
Score = 29.4 bits (67), Expect = 3.4
Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 9 FEKDLEDL---IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIV 49
+DL +K + +L++GAGG +LK L+ ++I +
Sbjct: 113 LVQDLLAQQVLLKGATILLIGAGGAARGVLKPLLDQQPASITVT 156
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium,
SGC, methyltransferase, LOC84291, transferase; HET:
SAH; 1.30A {Homo sapiens}
Length = 215
Score = 29.2 bits (65), Expect = 3.4
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 13 LEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQF 63
+L + ++LV+G G L L L GF N+ VD ++ V+ + +
Sbjct: 37 EPELRPEDRILVLGC-GNS-ALSYELFLGGFPNVTSVDYSSVVVAAMQACY 85
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase,
rossmann, flavoprotein, alternative initiati
mitochondrion, NADP; HET: FAD; 1.75A {Drosophila
melanogaster} PDB: 2nvk_X* 3dh9_A*
Length = 483
Score = 29.8 bits (68), Expect = 3.5
Identities = 15/38 (39%), Positives = 16/38 (42%), Gaps = 10/38 (26%)
Query: 5 IPGVFEK--------DLEDLIKKSKVLVVGAGGIGCEL 34
IPG E L+ K LVVGAG IG E
Sbjct: 167 IPGAVEYGITSDDLFSLDREPGK--TLVVGAGYIGLEC 202
>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft
separation, oxidoreductase; HET: NAP; 1.50A {Escherichia
coli} SCOP: c.2.1.7 c.58.1.5
Length = 271
Score = 29.4 bits (67), Expect = 3.6
Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 3/24 (12%)
Query: 9 FEKDLEDL---IKKSKVLVVGAGG 29
DLE L ++L++GAGG
Sbjct: 106 LLSDLERLSFIRPGLRILLIGAGG 129
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid,
amadoriase, deglycation, fructosamine oxidase; HET: MSE
FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Length = 438
Score = 29.8 bits (67), Expect = 3.7
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 18 KKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVD 50
K S +L+VGAG G +L G++N+ ++D
Sbjct: 5 KSSSLLIVGAGTWGTSTALHLARRGYTNVTVLD 37
>3qgm_A P-nitrophenyl phosphatase (PHO2); structural genomics, PSI-2,
protein structure initiative, MI center for structural
genomics, MCSG; HET: MSE; 2.00A {Archaeoglobus fulgidus}
Length = 268
Score = 29.4 bits (67), Expect = 3.7
Identities = 21/85 (24%), Positives = 29/85 (34%), Gaps = 18/85 (21%)
Query: 13 LEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTID--VSNLNRQFLFHKQHV 70
+ +KV G G+ EL +EIVD D + V NR+ F
Sbjct: 84 IAREKPNAKVFTTGEEGLIEELRLA-------GLEIVDYDEAEYLVVGSNRKINFELM-- 134
Query: 71 GKSKAQVA-RNSALNF---NPDANI 91
+KA A + NPD
Sbjct: 135 --TKALRACLRGIR-YIATNPDRIF 156
>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate
pathway, dehydrogenase, oxidoreductase; 2.00A
{Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB:
1e5l_A* 1e5q_A
Length = 450
Score = 29.9 bits (66), Expect = 3.8
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52
VL++G+G + L L SG + +
Sbjct: 5 SVLMLGSGFVTRPTLDVLTDSGI-KVTVACRT 35
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide,
acetylation, alternative initiation, cytoplasm, FAD,
flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A
{Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A*
1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A*
3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A*
1xan_A* 5grt_A* ...
Length = 478
Score = 29.8 bits (68), Expect = 3.8
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 4/28 (14%)
Query: 7 GVFEKDLEDLIKKSKVLVVGAGGIGCEL 34
G F LE+L + ++VGAG I E+
Sbjct: 179 GFF--QLEELPGR--SVIVGAGYIAVEM 202
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal
binding-site; 1.87A {Escherichia coli}
Length = 346
Score = 29.5 bits (67), Expect = 3.8
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52
V+++GAG IG ++ V G ++ +D+
Sbjct: 162 KNVIIIGAGTIGLLAIQCAVALGAKSVTAIDIS 194
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin,
flavin, electron transfer, hydride transfer,
oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia
coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Length = 671
Score = 30.0 bits (68), Expect = 3.8
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 21 KVLVVGAGGIGCEL 34
KV ++G GGIG +
Sbjct: 496 KVAIIGCGGIGFDT 509
>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein;
structural genomics, oxidoreductase, amino-acid
biosynthesis; 2.10A {Clostridium acetobutylicum}
Length = 282
Score = 29.4 bits (67), Expect = 3.8
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 9 FEKDLEDL---IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIV 49
F K L IK + +V+G+GG +L+ L + +I +V
Sbjct: 109 FGKMLSKFRVEIKNNICVVLGSGGAARAVLQYLKDNFAKDIYVV 152
>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha,
beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus
tokodaii}
Length = 273
Score = 29.5 bits (67), Expect = 3.9
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Query: 21 KVLVVGAGG-IGCELLKNL-----VLSGFSNIEIVDLDTIDVSNLN 60
+ L+ GA G +G EL + L V+ +++ EI +D+++
Sbjct: 2 RTLITGASGQLGIELSRLLSERHEVIKVYNSSEIQGGYKLDLTDFP 47
>4dna_A Probable glutathione reductase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; HET: FAD; 2.80A {Sinorhizobium
meliloti}
Length = 463
Score = 29.8 bits (68), Expect = 4.1
Identities = 9/28 (32%), Positives = 12/28 (42%), Gaps = 4/28 (14%)
Query: 7 GVFEKDLEDLIKKSKVLVVGAGGIGCEL 34
F DL L + +L+ G G I E
Sbjct: 162 EAF--DLPALPES--ILIAGGGYIAVEF 185
>2hx1_A Predicted sugar phosphatases of the HAD superfamily; ZP_00311070.1,
possible sugar phosphatase, structural genomics; HET:
MSE EPE; 2.10A {Cytophaga hutchinsonii}
Length = 284
Score = 29.1 bits (66), Expect = 4.1
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 12/57 (21%)
Query: 6 PGVFEKDLEDL-----IKKSKVLVVG-------AGGIGCELLKNLVLSGFSNIEIVD 50
+F + L I K ++L+VG GG L LVL+G + I+ +
Sbjct: 207 SQMFMFAYDMLRQKMEISKREILMVGDTLHTDILGGNKFGLDTALVLTGNTRIDDAE 263
Score = 28.4 bits (64), Expect = 9.1
Identities = 10/85 (11%), Positives = 26/85 (30%), Gaps = 8/85 (9%)
Query: 13 LEDLIKKSKVLVVGAGGIGCELLK-NLVLSGFSNIEIVDLDTID--VSNLNRQFLFHKQH 69
++ + V +G L+ + + S I+ ++ ++ V + F +
Sbjct: 91 IDLKVDGGIVAYLGTANSANYLVSDGIKMLPVSAIDDSNIGEVNALVLLDDEGFNWFHDL 150
Query: 70 VGKSKAQVARNSALNF---NPDANI 91
+ R + N D
Sbjct: 151 --NKTVNLLRKRTIPAIVANTDNTY 173
>2yx5_A UPF0062 protein MJ1593; anti parallel beta sheet, NPPSFA, national
project on protei structural and functional analyses;
2.30A {Methanocaldococcus jannaschii}
Length = 83
Score = 27.5 bits (62), Expect = 4.2
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 9/49 (18%)
Query: 194 KQFTLVMNALDNRAARNHVNRMC---LASEVPLIESGTAGYEGQVELIK 239
K ++M + + V MC LA+ P+I YE +VE I+
Sbjct: 41 KMIDIIMEGENEEKVKEEVEEMCKKLLAN--PVIHD----YEIKVEKIE 83
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide
oxidoreductase class I, rhodan coenzyme A, flavin
adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus
anthracis} PDB: 3icr_A* 3ict_A*
Length = 588
Score = 29.5 bits (67), Expect = 4.2
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 11/56 (19%)
Query: 6 PGVFE-KDLEDL--IKKS-------KVLVVGAGGIGCELLKNLVLSGFSNIEIVDL 51
+F +++ D IK V+G G IG E+++NL G + +V++
Sbjct: 164 KALFTLRNVPDTDRIKAYIDEKKPRHATVIGGGFIGVEMVENLRERGI-EVTLVEM 218
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed
with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A
{Saccharomyces cerevisiae}
Length = 479
Score = 29.4 bits (67), Expect = 4.4
Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 4/28 (14%)
Query: 7 GVFEKDLEDLIKKSKVLVVGAGGIGCEL 34
G F LE+ KK V+VVGAG IG EL
Sbjct: 177 GFF--RLEEQPKK--VVVVGAGYIGIEL 200
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle
structural genomics center for infectious gluathione
reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella
henselae}
Length = 484
Score = 29.4 bits (67), Expect = 4.4
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 4/28 (14%)
Query: 7 GVFEKDLEDLIKKSKVLVVGAGGIGCEL 34
+F DLE L K +++VG G IG E
Sbjct: 183 EIF--DLEKLPKS--IVIVGGGYIGVEF 206
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A,
flavin adenine dinucleotide, selenomethionine, F
flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis
str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Length = 480
Score = 29.4 bits (67), Expect = 4.5
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 11/56 (19%)
Query: 6 PGVFE-KDLEDL--IKKS-------KVLVVGAGGIGCELLKNLVLSGFSNIEIVDL 51
GV K + D I K+ V ++G G IG E+ + V G + +++
Sbjct: 163 QGVHLLKTIPDAERILKTLETNKVEDVTIIGGGAIGLEMAETFVELGK-KVRMIER 217
>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase;
HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB:
2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*
Length = 357
Score = 29.2 bits (66), Expect = 4.7
Identities = 9/44 (20%), Positives = 14/44 (31%)
Query: 20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQF 63
S V+G G +G L L + + L D +
Sbjct: 174 SSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDI 217
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity,
oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile}
PDB: 2rab_A*
Length = 463
Score = 29.4 bits (67), Expect = 4.8
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 4/28 (14%)
Query: 7 GVFEKDLEDLIKKSKVLVVGAGGIGCEL 34
G F L+ K+ V ++GAG IG EL
Sbjct: 158 GFF--ALQQQPKR--VAIIGAGYIGIEL 181
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A
{Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1geu_A* 1ger_A* 1get_A*
Length = 450
Score = 29.4 bits (67), Expect = 4.8
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 4/28 (14%)
Query: 7 GVFEKDLEDLIKKSKVLVVGAGGIGCEL 34
G F L L ++ V VVGAG IG EL
Sbjct: 159 GFF--ALPALPER--VAVVGAGYIGVEL 182
>2o3i_A Hypothetical protein; NESG, CVR68, Q7NTB2, structural genomics,
PSI-2, protein structure initiative; 2.30A
{Chromobacterium violaceum} SCOP: e.73.1.1
Length = 405
Score = 29.4 bits (65), Expect = 4.8
Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 6/52 (11%)
Query: 10 EKDLEDLIKKSKVLVVGAGG---IGCELLKNLVLSGFSN---IEIVDLDTID 55
DLE L++ + G GG L N + + +VD+D
Sbjct: 7 PSDLEPLLQGACFFGSGGGGTMISARHLAANFRKGDYYPTDKVRVVDVDEAT 58
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A
{Lactobacillus sanfranciscensis}
Length = 452
Score = 29.4 bits (67), Expect = 4.9
Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 9/54 (16%)
Query: 6 PGVFE-KDLEDL--IKKS-----KVLVVGAGGIGCELLKNLVLSGFSNIEIVDL 51
V+ K+ D + + + ++G+G IG EL + + N+ ++D
Sbjct: 128 SRVYLCKNYNDAKKLFEEAPKAKTITIIGSGYIGAELAEAYSNQNY-NVNLIDG 180
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase,
structural genomics structure initiative; 2.75A
{Pyrococcus horikoshii}
Length = 449
Score = 29.4 bits (67), Expect = 5.0
Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 11/56 (19%)
Query: 6 PGVFE-KDLEDL--IKKS-------KVLVVGAGGIGCELLKNLVLSGFSNIEIVDL 51
GVF D I++ V+++G G IG E+ + G N+ ++
Sbjct: 125 KGVFTADLPPDALAIREYMEKYKVENVVIIGGGYIGIEMAEAFAAQGK-NVTMIVR 179
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 29.5 bits (66), Expect = 5.0
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 3/23 (13%)
Query: 22 VLVVGAG--GIGCELLKNLVLSG 42
VL+ GAG IG E+L+ L L G
Sbjct: 479 VLITGAGKGSIGAEVLQGL-LQG 500
>3i83_A 2-dehydropantoate 2-reductase; structural genomics,
oxidoreductase, NADP, pantothenate BIOS PSI-2, protein
structure initiative; 1.90A {Methylococcus capsulatus}
Length = 320
Score = 29.1 bits (66), Expect = 5.2
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 21 KVLVVGAGGIGC 32
+LV+G G IG
Sbjct: 4 NILVIGTGAIGS 15
>3sze_A Serine protease ESPP; parallel beta-helix, hydrolase; 2.50A
{Escherichia coli O157}
Length = 968
Score = 29.2 bits (64), Expect = 5.6
Identities = 20/162 (12%), Positives = 45/162 (27%), Gaps = 3/162 (1%)
Query: 52 DTIDVSNLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVG 111
D F F H+ S V RN+ + + A+ + + + + H G
Sbjct: 568 DLSQPDWETGTFRFGTLHLENSDFSVGRNANVIGDIQAS---KSNITIGDTTAYIDLHAG 624
Query: 112 KSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFN 171
K+ N + + + + K S N+
Sbjct: 625 KNITGDGFGFRQNIVRGNSQGETLFTGGITAEDSTIVIKDKAKALFSNYVYLLNTKATIE 684
Query: 172 PDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVN 213
A++ ++D ++ T + + ++N
Sbjct: 685 NGADVTTQSGMFSTSDISISGNLSMTGNPDKDNKFEPSIYLN 726
>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A
{Staphylococcus aureus}
Length = 438
Score = 29.0 bits (66), Expect = 5.7
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 11/56 (19%)
Query: 6 PGVFE-KDLEDL--IKKS-------KVLVVGAGGIGCELLKNLVLSGFSNIEIVDL 51
F ++LED I + KVLVVGAG + E+L+NL G + ++
Sbjct: 125 DITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGL-HPTLIHR 179
>1q1r_A Putidaredoxin reductase; glutathione reductase fold,
oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida}
SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Length = 431
Score = 29.1 bits (66), Expect = 5.7
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 14 EDLIKKSKVLVVGAGGIGCEL 34
LI ++++V+G G IG E+
Sbjct: 144 RQLIADNRLVVIGGGYIGLEV 164
>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607;
structural genomics, PSI, protein structure initiative;
1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5
Length = 271
Score = 28.6 bits (65), Expect = 5.9
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 10/47 (21%)
Query: 9 FEKDLED--LIKKSKVLVVGAGG----IGCELLKNLVLSGFSNIEIV 49
K +E L K +KV+V G+GG + SGF ++I
Sbjct: 107 IVKLIEKYHLNKNAKVIVHGSGGMAKAVVAAFKN----SGFEKLKIY 149
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Length = 286
Score = 28.9 bits (64), Expect = 6.0
Identities = 7/30 (23%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 15 DLIKKSKVLVVGAGG-IGCELLKNLVLSGF 43
+ + V ++GAGG +G + + + S
Sbjct: 7 NDVGPKTVAILGAGGKMGARITRKIHDSAH 36
>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE
protein structure initiative; 2.50A {Geobacter
metallireducens}
Length = 312
Score = 28.7 bits (65), Expect = 6.1
Identities = 5/12 (41%), Positives = 9/12 (75%)
Query: 21 KVLVVGAGGIGC 32
++ +VGAG +G
Sbjct: 4 RIAIVGAGALGL 15
>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint
center for structural genomics, JCSG, protein structu
initiative; HET: NAI UNL; 2.05A {Clostridium
acetobutylicum} SCOP: c.2.1.2
Length = 292
Score = 28.6 bits (65), Expect = 6.1
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 21 KVLVVGAGG-IGCELLKNLVLSGFSNIEIVDLDTIDVSNLN 60
K+L+ GA G +G E+ K L I D+ +D++N+
Sbjct: 14 KILITGANGQLGREIQKQLKGKNVEVIP-TDVQDLDITNVL 53
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A
{Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 500
Score = 29.1 bits (66), Expect = 6.1
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 21 KVLVVGAGGIGCEL 34
K+ +VG+G I EL
Sbjct: 178 KIGIVGSGYIAVEL 191
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide
oxidoreductase, C(4A)-peroxyflavin, crystallography,
conformational dynamics; HET: FAD; 2.00A {Streptococcus
pyogenes} PDB: 2bcp_A* 2bc1_A*
Length = 490
Score = 29.1 bits (66), Expect = 6.2
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 21 KVLVVGAGGIGCELLKNLVLSGF 43
+V VVGAG IG EL + G
Sbjct: 196 RVAVVGAGYIGVELAEAFQRKGK 218
>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural
genomics of infec diseases, csgid; HET: NAD SKM; 1.45A
{Listeria monocytogenes} PDB: 3toz_A*
Length = 315
Score = 28.7 bits (65), Expect = 6.6
Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 11/48 (22%)
Query: 9 FEKDLEDL---IKKSKVLVVGAGG----IGCELLKNLVLSGFSNIEIV 49
+ + L++ I K+ + GAGG I + G I I
Sbjct: 141 YMRALKEAGHDIIGKKMTICGAGGAATAICIQAAL----DGVKEISIF 184
>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex,
amino-acid biosynthesis, aromatic A biosynthesis, NAD,
oxidoreductase; HET: NAD; 1.00A {Corynebacterium
glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A
Length = 283
Score = 28.7 bits (65), Expect = 6.6
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 11/49 (22%)
Query: 9 FEKDLEDL---IKKSKVLVVGAGG----IGCELLKNLVLSGFSNIEIVD 50
F + +E+ K V+ VGAGG + L+ G +++ D
Sbjct: 114 FGRGMEEGLPNAKLDSVVQVGAGGVGNAVAYALVT----HGVQKLQVAD 158
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics,
infectious diseases, bacillus anthracis STR. AMES,
rhamnose biosynthetic pathway; HET: NAP; 2.65A
{Bacillus anthracis}
Length = 287
Score = 28.6 bits (65), Expect = 6.7
Identities = 10/41 (24%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 21 KVLVVGAGG-IGCELLKNLVLSGFSNIEIVDLDTIDVSNLN 60
+V++ GA G +G +L + L + D +D++N++
Sbjct: 7 RVIITGANGQLGKQLQEELNPEEYDIYP-FDKKLLDITNIS 46
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces
lactis}
Length = 1236
Score = 29.2 bits (66), Expect = 6.8
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 9/49 (18%)
Query: 415 AVAGSSKETDGGGLKDQRVWSVAECARVFERSVRELKTKF-DAAV--EK 460
+ AG GGG+ Q+V S + RVFE + K+ F DA V E+
Sbjct: 187 STAG------GGGIGLQKVDSEDDIERVFETVQHQGKSYFGDAGVFMER 229
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET:
NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5
d.162.1.1 PDB: 1lth_T*
Length = 319
Score = 28.6 bits (65), Expect = 6.9
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 14 EDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD 52
E +K +K+ V+GAG +G L G + EIV D
Sbjct: 2 ETTVKPTKLAVIGAGAVGSTLAFAAAQRGIAR-EIVLED 39
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase;
HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5
d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Length = 493
Score = 28.9 bits (65), Expect = 7.0
Identities = 5/21 (23%), Positives = 11/21 (52%)
Query: 14 EDLIKKSKVLVVGAGGIGCEL 34
+ + + ++G G +G EL
Sbjct: 175 KISREVKSITIIGGGFLGSEL 195
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F
flavoprotein, oxidoreductase; HET: FAD; 2.20A
{Rhodopseudomonas palustris}
Length = 404
Score = 28.7 bits (65), Expect = 7.1
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 14 EDLIKKSKVLVVGAGGIGCEL 34
+ + K V+V+GAG IG E
Sbjct: 137 QRMPDKKHVVVIGAGFIGLEF 157
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A
{Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A*
1f8w_A*
Length = 447
Score = 28.6 bits (65), Expect = 7.2
Identities = 9/47 (19%), Positives = 20/47 (42%), Gaps = 10/47 (21%)
Query: 6 PGVFE-KDLEDL--IKKS-------KVLVVGAGGIGCELLKNLVLSG 42
++ + + +K+ V+V+G+G IG E + +G
Sbjct: 126 DNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAG 172
>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme,
structural genomics, JCS protein structure initiative,
PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3
PDB: 2hae_A*
Length = 388
Score = 28.6 bits (65), Expect = 7.2
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 11/51 (21%)
Query: 2 ATKIPGVFEKDLEDLIKKSKVLVVGAG--GIGCELLKNLVLSGFSNIEIVD 50
A K+ K +E++ KV+V G G G +K L+ G N+ VD
Sbjct: 182 ALKLTE---KKIEEV----KVVVNGIGAAGYNI--VKFLLDLGVKNVVAVD 223
>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics,
PSI-2, protein STRU initiative; HET: NAD; 2.50A
{Legionella pneumophila subsp}
Length = 480
Score = 28.9 bits (64), Expect = 7.3
Identities = 7/45 (15%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 21 KVLVVGAGGIG---CELLKNLVLSGFSNIEIVDLDTIDVSNLNRQ 62
+ +++G G +G L+ S + I+ + V +
Sbjct: 15 RFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEGTKVDVAQQY 59
>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL
oxidoreductase, alpha/beta domain, rossmann fold; HET:
SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A*
3phj_A*
Length = 269
Score = 28.7 bits (65), Expect = 7.4
Identities = 7/21 (33%), Positives = 10/21 (47%), Gaps = 1/21 (4%)
Query: 9 FEKDLEDLIKKSKVLVVGAGG 29
F L+ L++GAGG
Sbjct: 109 FYLSLKQK-NYQNALILGAGG 128
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A
{Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A*
2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Length = 408
Score = 28.7 bits (65), Expect = 7.5
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 14 EDLIKKSKVLVVGAGGIGCEL 34
L +S++L+VG G IG EL
Sbjct: 140 AGLRPQSRLLIVGGGVIGLEL 160
>1gtd_A MTH169; synthetase, FGAM synthetase, purine synthesis pathway, PSI,
protein structure initiative, NESG; 2.56A
{Methanobacterium thermoautotrophicum} SCOP: d.284.1.1
Length = 85
Score = 26.8 bits (60), Expect = 8.0
Identities = 9/36 (25%), Positives = 12/36 (33%), Gaps = 5/36 (13%)
Query: 194 KQFTLVMNALDNRAARNHVNRMC---LASEVPLIES 226
T M+ A V MC L + P+I
Sbjct: 41 DVITFTMDEDSLEAVEREVEDMCQRLLCN--PVIHD 74
>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase
(decarboxylating)); hypothetical protein, structural
genomics, PSI; 2.50A {Streptococcus pyogenes}
Length = 398
Score = 28.6 bits (65), Expect = 8.4
Identities = 11/49 (22%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
Query: 2 ATKIPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVD 50
+ K+ K L+++ ++V G G G + + L+ +G + + +VD
Sbjct: 178 SLKLLK---KSLDEV----SIVVNGGGSAGLSITRKLLAAGATKVTVVD 219
>1vq3_A Phosphoribosylformylglycinamidine synthase, PURS; TM1244, PURS SUB
6.3.5.3), structural genomics, joint center for
structural JCSG; 1.90A {Thermotoga maritima} SCOP:
d.284.1.1 PDB: 3d54_B*
Length = 94
Score = 26.8 bits (60), Expect = 8.5
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 5/36 (13%)
Query: 194 KQFTLVMNALDNRAARNHVNRMC---LASEVPLIES 226
K L + A + A V + C L + P++E
Sbjct: 55 KSIHLEVEAENKEKAYEIVKKACEELLVN--PVVEE 88
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD
binding protein, NADH binding protein, aromatic hydrocar
catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida}
Length = 410
Score = 28.7 bits (65), Expect = 8.5
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 14 EDLIKKSKVLVVGAGGIGCEL 34
+ +++L+VG G IGCE+
Sbjct: 138 DSWTSATRLLIVGGGLIGCEV 158
>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction,
structural genomics, NPPSFA; 2.25A {Geobacillus
kaustophilus}
Length = 297
Score = 28.3 bits (64), Expect = 9.4
Identities = 10/45 (22%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 9 FEKDLEDL----IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIV 49
+ + LE+ + ++LV+GAGG + +L+ + I++
Sbjct: 127 YVQALEEEMNITLDGKRILVIGAGGGARGIYFSLLSTAAERIDMA 171
>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A,
GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter
vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A*
Length = 220
Score = 28.1 bits (63), Expect = 9.6
Identities = 25/166 (15%), Positives = 54/166 (32%), Gaps = 26/166 (15%)
Query: 18 KKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQV 77
V+++G GG ++++L G + IVD ++ R+ + VG A
Sbjct: 11 AIGGVVIIGGGGHAKVVIESLRACGETVAAIVD------ADPTRRAVLGVPVVGDDLA-- 62
Query: 78 ARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTS 137
L + ++ + + RQ L K AR+ + N +
Sbjct: 63 --LPMLREQGLSRLFVAIGDNRLRQKLGRK----------ARDHGFSL---VNAIHPSAV 107
Query: 138 IIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSI 183
+ + L + + + + +N +V H +
Sbjct: 108 VSPSVRLGEGVAVMAGVAINADSWIGDLAIINTG---AVVDHDCRL 150
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.132 0.385
Gapped
Lambda K H
0.267 0.0777 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,951,879
Number of extensions: 672519
Number of successful extensions: 1904
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1863
Number of HSP's successfully gapped: 196
Length of query: 726
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 625
Effective length of database: 3,881,772
Effective search space: 2426107500
Effective search space used: 2426107500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.2 bits)