BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9785
(63 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 68.6 bits (166), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 29/38 (76%), Positives = 33/38 (86%)
Query: 26 GRKGALKKKNVYNVKDHKFIPRFFKQPTFCSHCKDFIW 63
RKGAL++KNV+ VK+HKF RFFKQPTFCSHC DFIW
Sbjct: 22 ARKGALRQKNVHEVKNHKFTARFFKQPTFCSHCTDFIW 59
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 42 HKFIPRFFKQPTFCSHCKDFIW 63
HKF + PTFC HC ++
Sbjct: 103 HKFKIHTYSSPTFCDHCGSLLY 124
>pdb|2ENN|A Chain A, Solution Structure Of The First C1 Domain From Human
Protein Kinase C Theta
Length = 77
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 28/37 (75%)
Query: 27 RKGALKKKNVYNVKDHKFIPRFFKQPTFCSHCKDFIW 63
R+GA+K+ V++VK H+F FF QPTFCS C +F+W
Sbjct: 9 RRGAIKQAKVHHVKCHEFTATFFPQPTFCSVCHEFVW 45
>pdb|2YUU|A Chain A, Solution Structure Of The First Phorbol
EstersDIACYLGLYCEROL BINDING DOMAIN OF HUMAN PROTEIN
Kinase C, Delta
Length = 83
Score = 47.8 bits (112), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 32 KKKNVYNVKDHKFIPRFFKQPTFCSHCKDFIW 63
K+ ++ +K+H+FI FF QPTFCS CKDF+W
Sbjct: 8 KQAKIHYIKNHEFIATFFGQPTFCSVCKDFVW 39
>pdb|2E73|A Chain A, Solution Structure Of The Phorbol EstersDIACYLGLYCEROL
Binding Domain Of Protein Kinase C Gamma
Length = 77
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/22 (86%), Positives = 19/22 (86%)
Query: 42 HKFIPRFFKQPTFCSHCKDFIW 63
HKF RFFKQPTFCSHC DFIW
Sbjct: 8 HKFTARFFKQPTFCSHCTDFIW 29
>pdb|4FKD|A Chain A, Identification Of The Activator Binding Residues In The
Second Cysteine-rich Regulatory Domain Of Protein
Kinase C Theta
Length = 65
Score = 31.6 bits (70), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 38 NVKDHKFIPRFFKQPTFCSHCKDFIW 63
+V H+F +K PTFC HC +W
Sbjct: 6 SVGSHRFKVYNYKSPTFCEHCGTLLW 31
>pdb|3UGD|A Chain A, Structural And Functional Characterization Of An
Anesthetic Binding Site In The Second Cysteine-Rich
Domain Of Protein Kinase C Delta
pdb|3UGD|B Chain B, Structural And Functional Characterization Of An
Anesthetic Binding Site In The Second Cysteine-Rich
Domain Of Protein Kinase C Delta
Length = 65
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 38 NVKDHKFIPRFFKQPTFCSHCKDFIW 63
+V H+F + PTFC HC +W
Sbjct: 6 SVGSHRFKVHNYMSPTFCDHCGSLLW 31
>pdb|3UFF|A Chain A, Structural And Functional Characterization Of An
Anesthetic Binding Site In The Second Cysteine-Rich
Domain Of Protein Kinase Cdelta
pdb|3UFF|B Chain B, Structural And Functional Characterization Of An
Anesthetic Binding Site In The Second Cysteine-Rich
Domain Of Protein Kinase Cdelta
Length = 65
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 38 NVKDHKFIPRFFKQPTFCSHCKDFIW 63
+V H+F + PTFC HC +W
Sbjct: 6 SVGSHRFKVTNYMSPTFCDHCGSLLW 31
>pdb|2ENZ|A Chain A, Solution Structure Of The Second C1 Domain From Human
Protein Kinase C Theta
Length = 65
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 42 HKFIPRFFKQPTFCSHCKDFIW 63
H+F +K PTFC HC +W
Sbjct: 13 HRFKVYNYKSPTFCEHCGTLLW 34
>pdb|3UEJ|A Chain A, Structural And Functional Characterization Of An
Anesthetic Binding Site In The Second Cysteine-Rich
Domain Of Protein Kinase Cdelta
pdb|3UEJ|B Chain B, Structural And Functional Characterization Of An
Anesthetic Binding Site In The Second Cysteine-Rich
Domain Of Protein Kinase Cdelta
pdb|3UGI|A Chain A, Structural And Functional Characterization Of An
Anesthetic Binding Site In The Second Cysteine-Rich
Domain Of Protein Kinase C Delta
pdb|3UGI|B Chain B, Structural And Functional Characterization Of An
Anesthetic Binding Site In The Second Cysteine-Rich
Domain Of Protein Kinase C Delta
pdb|3UGL|A Chain A, Structural And Functional Characterization Of An
Anesthetic Binding Site In The Second Cysteine-Rich
Domain Of Protein Kinase C Delta
pdb|3UGL|B Chain B, Structural And Functional Characterization Of An
Anesthetic Binding Site In The Second Cysteine-Rich
Domain Of Protein Kinase C Delta
Length = 65
Score = 29.6 bits (65), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 38 NVKDHKFIPRFFKQPTFCSHCKDFIW 63
+V H+F + PTFC HC +W
Sbjct: 6 SVGSHRFKVYNYMSPTFCDHCGSLLW 31
>pdb|1XA6|A Chain A, Crystal Structure Of The Human Beta2-Chimaerin
Length = 466
Score = 29.6 bits (65), Expect = 0.48, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 27 RKGALK-KKNVYNV-KDHKFIPRFFKQPTFCSHCKDFIW 63
R+ AL N +N K H F F+ P +C +C +F+W
Sbjct: 196 RRAALTHNDNHFNYEKTHNFKVHTFRGPHWCEYCANFMW 234
>pdb|3UEY|A Chain A, Structural And Functional Characterization Of An
Anesthetic Binding Site In The Second Cysteine-Rich
Domain Of Protein Kinase Cdelta
pdb|3UEY|B Chain B, Structural And Functional Characterization Of An
Anesthetic Binding Site In The Second Cysteine-Rich
Domain Of Protein Kinase Cdelta
Length = 65
Score = 28.9 bits (63), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 38 NVKDHKFIPRFFKQPTFCSHCKDFIW 63
+V H+F + PTFC HC +W
Sbjct: 6 SVGSHRFKVFNYMSPTFCDHCGSLLW 31
>pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
pdb|3VPS|B Chain B, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
Length = 321
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 36 VYNVKDHKFIPRFFKQP 52
VY++ HK +PR FKQP
Sbjct: 73 VYHLASHKSVPRSFKQP 89
>pdb|3CXL|A Chain A, Crystal Structure Of Human Chimerin 1 (Chn1)
Length = 463
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 40 KDHKFIPRFFKQPTFCSHCKDFIW 63
K H F F+ P +C +C +F+W
Sbjct: 208 KIHNFKVHTFRGPHWCEYCANFMW 231
>pdb|1PTQ|A Chain A, Protein Kinase C Delta Cys2 Domain
pdb|1PTR|A Chain A, Protein Kinase C Delta Cys2 Domain Complexed With
Phorbol- 13-Acetate
Length = 50
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 42 HKFIPRFFKQPTFCSHCKDFIW 63
H+F + PTFC HC +W
Sbjct: 1 HRFKVYNYMSPTFCDHCGSLLW 22
>pdb|1TBN|A Chain A, Nmr Structure Of A Protein Kinase C-G Phorbol-Binding
Domain, Minimized Average Structure
pdb|1TBO|A Chain A, Nmr Structure Of A Protein Kinase C-g Phorbol-binding
Domain, 30 Structures
Length = 82
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 42 HKFIPRFFKQPTFCSHCKDFIW 63
HKF + PTFC HC ++
Sbjct: 11 HKFRLHSYSSPTFCDHCGSLLY 32
>pdb|2DB6|A Chain A, Solution Structure Of Rsgi Ruh-051, A C1 Domain Of Stac3
From Human Cdna
Length = 74
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 36 VYNVKDHKFIPRFFKQPTFCSHCKDFI 62
+ N K HKF FFK+P FC C I
Sbjct: 12 LVNDKPHKFKDHFFKKPKFCDVCARMI 38
>pdb|2ELI|A Chain A, Solution Structure Of The Second Phorbol
EstersDIACYLGLYCEROL BINDING DOMAIN OF HUMAN PROTEIN
Kinase C Alpha Type
Length = 85
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 42 HKFIPRFFKQPTFCSHCKDFIW 63
HKF + PTFC HC ++
Sbjct: 18 HKFKIHTYGSPTFCDHCGSLLY 39
>pdb|2ROW|A Chain A, The C1 Domain Of Rock Ii
Length = 84
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 32 KKKNVYNVKDHKFIPRFFKQPTFCSHCKDFIW 63
+K N K H+FIP + PT C C +W
Sbjct: 15 EKSNYICHKGHEFIPTLYHFPTNCEACMKPLW 46
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.330 0.144 0.487
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,482,790
Number of Sequences: 62578
Number of extensions: 40905
Number of successful extensions: 94
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75
Number of HSP's gapped (non-prelim): 19
length of query: 63
length of database: 14,973,337
effective HSP length: 34
effective length of query: 29
effective length of database: 12,845,685
effective search space: 372524865
effective search space used: 372524865
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 45 (21.9 bits)