Query psy9785
Match_columns 63
No_of_seqs 103 out of 236
Neff 4.5
Searched_HMMs 29240
Date Fri Aug 16 19:31:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9785.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9785hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2enn_A NPKC-theta, protein kin 99.5 2E-15 6.9E-20 89.4 3.2 42 22-63 4-45 (77)
2 2yuu_A NPKC-delta, protein kin 99.3 7E-13 2.4E-17 79.1 2.6 37 27-63 3-39 (83)
3 3pfq_A PKC-B, PKC-beta, protei 99.2 2.7E-12 9.1E-17 96.8 0.0 42 22-63 18-59 (674)
4 2row_A RHO-associated protein 98.9 5.6E-10 1.9E-14 68.0 2.8 30 34-63 17-46 (84)
5 3uej_A NPKC-delta, protein kin 98.8 1.7E-09 5.9E-14 61.5 2.3 29 35-63 3-31 (65)
6 2db6_A SH3 and cysteine rich d 98.7 3.5E-09 1.2E-13 61.9 2.0 30 34-63 10-39 (74)
7 1faq_A RAF-1; transferase, ser 98.6 1.8E-08 6.2E-13 54.6 1.9 25 39-63 1-25 (52)
8 2enz_A NPKC-theta, protein kin 98.5 5.4E-08 1.9E-12 55.3 2.4 29 35-63 6-34 (65)
9 1y8f_A UNC-13 homolog A, MUNC1 98.3 2.3E-07 7.8E-12 52.9 2.6 26 38-63 10-35 (66)
10 1ptq_A Protein kinase C delta 98.3 4.5E-07 1.5E-11 48.5 2.3 22 42-63 1-22 (50)
11 2eli_A Protein kinase C alpha 98.3 4E-07 1.4E-11 54.2 2.3 26 38-63 14-39 (85)
12 1rfh_A RAS association (ralgds 98.2 3.8E-07 1.3E-11 51.3 1.5 27 37-63 6-33 (59)
13 2fnf_X Putative RAS effector N 98.1 1.1E-06 3.7E-11 51.4 2.1 25 39-63 21-46 (72)
14 3cxl_A N-chimerin; SH2, RHO-GA 97.6 2.8E-05 9.6E-10 56.9 2.6 38 26-63 192-231 (463)
15 4b6d_A RAC GTPase-activating p 97.6 3.7E-05 1.3E-09 43.7 2.4 25 39-63 6-30 (61)
16 3ky9_A Proto-oncogene VAV; cal 97.3 0.00011 3.7E-09 54.8 2.3 26 38-63 515-540 (587)
17 2vrw_B P95VAV, VAV1, proto-onc 97.0 0.00021 7.3E-09 50.5 1.9 26 38-63 343-368 (406)
18 1kbe_A Kinase suppressor of RA 96.9 0.00051 1.7E-08 37.7 2.3 23 40-63 3-25 (49)
19 3pfq_A PKC-B, PKC-beta, protei 93.4 0.027 9.1E-07 42.4 1.6 24 40-63 101-124 (674)
20 1r79_A Diacylglycerol kinase, 78.3 1.2 4.2E-05 26.3 2.0 25 39-63 25-49 (84)
21 2uzg_A Ubiquitin carboxyl-term 27.4 22 0.00075 20.9 1.0 26 37-62 63-88 (97)
22 2i50_A Ubiquitin carboxyl-term 24.6 30 0.001 21.4 1.3 23 40-62 84-106 (126)
23 3ga8_A HTH-type transcriptiona 22.9 49 0.0017 18.2 1.9 27 36-63 21-47 (78)
No 1
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=99.55 E-value=2e-15 Score=89.39 Aligned_cols=42 Identities=48% Similarity=0.949 Sum_probs=39.9
Q ss_pred cccccccchhhhcceeecCCceeeeeecCCccccCCCCCccC
Q psy9785 22 LKIRGRKGALKKKNVYNVKDHKFIPRFFKQPTFCSHCKDFIW 63 (63)
Q Consensus 22 ~~~~~RrgA~r~kKVh~v~GH~F~a~~f~qptfCa~C~efIW 63 (63)
..+++|+||+|+++||+++||.|.++.|.+||||++|.++||
T Consensus 4 ~~~~~r~ga~r~~~~~~~~~H~F~~~~f~~pt~C~~C~~~lw 45 (77)
T 2enn_A 4 GSSGQRRGAIKQAKVHHVKCHEFTATFFPQPTFCSVCHEFVW 45 (77)
T ss_dssp CCCCCCCCCCCCCCCEESSSCEEEEECCSSCEECSSSCCEEC
T ss_pred ccccccCccccccccccCCCCccEEEcCCCCcCccccChhhc
Confidence 457889999999999999999999999999999999999999
No 2
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=7e-13 Score=79.07 Aligned_cols=37 Identities=49% Similarity=1.038 Sum_probs=35.5
Q ss_pred ccchhhhcceeecCCceeeeeecCCccccCCCCCccC
Q psy9785 27 RKGALKKKNVYNVKDHKFIPRFFKQPTFCSHCKDFIW 63 (63)
Q Consensus 27 RrgA~r~kKVh~v~GH~F~a~~f~qptfCa~C~efIW 63 (63)
|.+|+|+++||+++||.|+++.|.+||+|++|.++||
T Consensus 3 ~~~a~r~~k~~~~~~H~F~~~~~~~pt~C~~C~~~lw 39 (83)
T 2yuu_A 3 SGSSGKQAKIHYIKNHEFIATFFGQPTFCSVCKDFVW 39 (83)
T ss_dssp CCCCCCCCCEECGGGCCEEEECCSSCCCCSSSCCCCC
T ss_pred cccccchhhCcccCCCceEeEeCCCCcChhhcChhhc
Confidence 6789999999999999999999999999999999999
No 3
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=99.17 E-value=2.7e-12 Score=96.76 Aligned_cols=42 Identities=69% Similarity=1.218 Sum_probs=0.0
Q ss_pred cccccccchhhhcceeecCCceeeeeecCCccccCCCCCccC
Q psy9785 22 LKIRGRKGALKKKNVYNVKDHKFIPRFFKQPTFCSHCKDFIW 63 (63)
Q Consensus 22 ~~~~~RrgA~r~kKVh~v~GH~F~a~~f~qptfCa~C~efIW 63 (63)
+..+.|+||+|++++|+++||.|.+++|++||||+||+++||
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~H~f~~~~~~~p~~C~~C~~~i~ 59 (674)
T 3pfq_A 18 TVRFARKGALRQKNVHEVKNHKFTARFFKQPTFCSHCTDFIW 59 (674)
T ss_dssp ------------------------------------------
T ss_pred hhhhhccCcccccCCcccCCceEEeeeCCCCCcccccccccc
Confidence 445568999999899999999999999999999999999999
No 4
>2row_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}
Probab=98.91 E-value=5.6e-10 Score=68.00 Aligned_cols=30 Identities=37% Similarity=0.822 Sum_probs=28.2
Q ss_pred cceeecCCceeeeeecCCccccCCCCCccC
Q psy9785 34 KNVYNVKDHKFIPRFFKQPTFCSHCKDFIW 63 (63)
Q Consensus 34 kKVh~v~GH~F~a~~f~qptfCa~C~efIW 63 (63)
..+++++||.|+++.|++||||++|+++||
T Consensus 17 ~~~~~~~~H~F~~~~~~~PT~Cd~C~~~lW 46 (84)
T 2row_A 17 SNYICHKGHEFIPTLYHFPTNCEACMKPLW 46 (84)
T ss_dssp CCCEEETTEEEEEECCSSCEECSSSSSEEC
T ss_pred cceEEcCCcceEeEcCCCCcchhhcCHhhh
Confidence 457789999999999999999999999999
No 5
>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*
Probab=98.80 E-value=1.7e-09 Score=61.49 Aligned_cols=29 Identities=34% Similarity=0.868 Sum_probs=27.9
Q ss_pred ceeecCCceeeeeecCCccccCCCCCccC
Q psy9785 35 NVYNVKDHKFIPRFFKQPTFCSHCKDFIW 63 (63)
Q Consensus 35 KVh~v~GH~F~a~~f~qptfCa~C~efIW 63 (63)
|+|++++|.|.++.|.+||+|++|+++||
T Consensus 3 ~~~~~~~H~F~~~~~~~pt~C~~C~~~l~ 31 (65)
T 3uej_A 3 RRASVGSHRFKVYNYMSPTFCDHCGSLLW 31 (65)
T ss_dssp CCEEEEECCEEEECCSSCCBCTTTCCBCC
T ss_pred cceEeCCceEEeEeCCCCCcccccChhhh
Confidence 67999999999999999999999999998
No 6
>2db6_A SH3 and cysteine rich domain 3; STAC3, C1 domain, cystein-rich domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.73 E-value=3.5e-09 Score=61.92 Aligned_cols=30 Identities=43% Similarity=0.838 Sum_probs=28.3
Q ss_pred cceeecCCceeeeeecCCccccCCCCCccC
Q psy9785 34 KNVYNVKDHKFIPRFFKQPTFCSHCKDFIW 63 (63)
Q Consensus 34 kKVh~v~GH~F~a~~f~qptfCa~C~efIW 63 (63)
.+++...||.|.++.|.+||||++|+++||
T Consensus 10 ~k~~~~~~H~F~~~~f~~pt~C~~C~~~lw 39 (74)
T 2db6_A 10 PKLVNDKPHKFKDHFFKKPKFCDVCARMIV 39 (74)
T ss_dssp CCCSCSSBCCEEEEECSSCEECSSSCCEEC
T ss_pred cccccCCCCceEEeeCCCCcCchhcChhhc
Confidence 467888999999999999999999999999
No 7
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=98.58 E-value=1.8e-08 Score=54.59 Aligned_cols=25 Identities=28% Similarity=0.781 Sum_probs=24.0
Q ss_pred cCCceeeeeecCCccccCCCCCccC
Q psy9785 39 VKDHKFIPRFFKQPTFCSHCKDFIW 63 (63)
Q Consensus 39 v~GH~F~a~~f~qptfCa~C~efIW 63 (63)
+++|.|.++.|.+||+|++|+++||
T Consensus 1 ~~~H~F~~~~~~~pt~C~~C~~~l~ 25 (52)
T 1faq_A 1 LTTHNFARKTFLKLAFCDICQKFLL 25 (52)
T ss_dssp CCCCCCEEECCSSCEECTTSSSEEC
T ss_pred CCCceeEeEeCCCCcCCCCcccccc
Confidence 5799999999999999999999998
No 8
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=98.49 E-value=5.4e-08 Score=55.29 Aligned_cols=29 Identities=34% Similarity=0.773 Sum_probs=26.3
Q ss_pred ceeecCCceeeeeecCCccccCCCCCccC
Q psy9785 35 NVYNVKDHKFIPRFFKQPTFCSHCKDFIW 63 (63)
Q Consensus 35 KVh~v~GH~F~a~~f~qptfCa~C~efIW 63 (63)
+++...+|.|.++.|.+||+|++|+++||
T Consensus 6 ~~~~~~~H~F~~~~~~~pt~C~~C~~~l~ 34 (65)
T 2enz_A 6 SGKIDMPHRFKVYNYKSPTFCEHCGTLLW 34 (65)
T ss_dssp CCCCCCCCCEEECCCCSCCBCSSSCCBCC
T ss_pred cCCCCCCCccEeEcCCCCcCchhcChhhe
Confidence 45556899999999999999999999999
No 9
>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain, zinc-binding domain, endocytosis/exocytosis,signaling protein complex; NMR {Rattus norvegicus}
Probab=98.34 E-value=2.3e-07 Score=52.90 Aligned_cols=26 Identities=27% Similarity=0.721 Sum_probs=22.7
Q ss_pred ecCCceeeeeecCCccccCCCCCccC
Q psy9785 38 NVKDHKFIPRFFKQPTFCSHCKDFIW 63 (63)
Q Consensus 38 ~v~GH~F~a~~f~qptfCa~C~efIW 63 (63)
...+|.|.++.|.+||+|++|.++||
T Consensus 10 ~~~~H~F~~~~~~~pt~C~~C~~~l~ 35 (66)
T 1y8f_A 10 GGIQHNFEVWTATTPTYCYECEGLLW 35 (66)
T ss_dssp ---CCCEEEEECSSCCCCTTTCCCCC
T ss_pred CCCCcccEeeeCCCCcChhhcChhhc
Confidence 44799999999999999999999999
No 10
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=98.26 E-value=4.5e-07 Score=48.53 Aligned_cols=22 Identities=41% Similarity=1.147 Sum_probs=21.5
Q ss_pred ceeeeeecCCccccCCCCCccC
Q psy9785 42 HKFIPRFFKQPTFCSHCKDFIW 63 (63)
Q Consensus 42 H~F~a~~f~qptfCa~C~efIW 63 (63)
|.|.++.|.+||+|++|+++||
T Consensus 1 H~F~~~~~~~pt~C~~C~~~l~ 22 (50)
T 1ptq_A 1 HRFKVYNYMSPTFCDHCGSLLW 22 (50)
T ss_dssp CCEEEECCSSCCBCTTTCCBCC
T ss_pred CCCEeecCCCCCCcCCCCceee
Confidence 8999999999999999999999
No 11
>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.25 E-value=4e-07 Score=54.25 Aligned_cols=26 Identities=35% Similarity=0.855 Sum_probs=24.4
Q ss_pred ecCCceeeeeecCCccccCCCCCccC
Q psy9785 38 NVKDHKFIPRFFKQPTFCSHCKDFIW 63 (63)
Q Consensus 38 ~v~GH~F~a~~f~qptfCa~C~efIW 63 (63)
...+|.|.++.|.+||+|++|.++||
T Consensus 14 ~~~~H~F~~~~~~~pt~C~~C~~~l~ 39 (85)
T 2eli_A 14 PRSKHKFKIHTYGSPTFCDHCGSLLY 39 (85)
T ss_dssp TTTSCCCEEECCSSCCBCSSSCCBCC
T ss_pred CCCCcccEeeeCCCCcCCcccCcccc
Confidence 45799999999999999999999999
No 12
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=98.21 E-value=3.8e-07 Score=51.30 Aligned_cols=27 Identities=19% Similarity=0.480 Sum_probs=24.2
Q ss_pred eecCCceeee-eecCCccccCCCCCccC
Q psy9785 37 YNVKDHKFIP-RFFKQPTFCSHCKDFIW 63 (63)
Q Consensus 37 h~v~GH~F~a-~~f~qptfCa~C~efIW 63 (63)
....||.|.+ +.|.+||+|++|+++||
T Consensus 6 ~~~~~H~F~~~~~~~~pt~C~~C~~~i~ 33 (59)
T 1rfh_A 6 ERGEGHRFVELALRGGPGWCDLCGREVL 33 (59)
T ss_dssp CCCSSCCCEECCCSSCCEECTTTCSEEC
T ss_pred cCCCCCcCeeeeccCCCeEchhcchhhh
Confidence 4558999999 99999999999999884
No 13
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=98.11 E-value=1.1e-06 Score=51.36 Aligned_cols=25 Identities=20% Similarity=0.550 Sum_probs=23.1
Q ss_pred cCCceeee-eecCCccccCCCCCccC
Q psy9785 39 VKDHKFIP-RFFKQPTFCSHCKDFIW 63 (63)
Q Consensus 39 v~GH~F~a-~~f~qptfCa~C~efIW 63 (63)
..||.|.+ +.|.+||||++|+++||
T Consensus 21 ~~~H~F~~~~~~~~pt~C~~C~~~l~ 46 (72)
T 2fnf_X 21 GEGHRFVELALRGGPGWCDLCGREVL 46 (72)
T ss_dssp CSSCCCEECCCCSSCCBCTTTSSBCS
T ss_pred CCCCccceeecCCCCcchhhhhHHHH
Confidence 47999999 99999999999999984
No 14
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=97.59 E-value=2.8e-05 Score=56.87 Aligned_cols=38 Identities=32% Similarity=0.733 Sum_probs=24.2
Q ss_pred cccchhhhccee--ecCCceeeeeecCCccccCCCCCccC
Q psy9785 26 GRKGALKKKNVY--NVKDHKFIPRFFKQPTFCSHCKDFIW 63 (63)
Q Consensus 26 ~RrgA~r~kKVh--~v~GH~F~a~~f~qptfCa~C~efIW 63 (63)
.|++++.+..-| .+..|.|..+.|..||+|.+|+++||
T Consensus 192 ~rea~l~~~~~H~niv~~h~f~~~~~~~pt~C~~C~~~l~ 231 (463)
T 3cxl_A 192 VRRATLKENEQIPKYEKIHNFKVHTFRGPHWCEYCANFMW 231 (463)
T ss_dssp ---------------CBCCCEEEECCSSCCBCTTTCCBCC
T ss_pred cccccccccccccccCCCcceEEeecCCCCcchhhhhhhh
Confidence 456665543334 56899999999999999999999998
No 15
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=97.57 E-value=3.7e-05 Score=43.74 Aligned_cols=25 Identities=24% Similarity=0.529 Sum_probs=23.1
Q ss_pred cCCceeeeeecCCccccCCCCCccC
Q psy9785 39 VKDHKFIPRFFKQPTFCSHCKDFIW 63 (63)
Q Consensus 39 v~GH~F~a~~f~qptfCa~C~efIW 63 (63)
..+|.|+++.|..|++|++|++.||
T Consensus 6 ~~~H~F~~kt~~~~~~C~~Cg~~i~ 30 (61)
T 4b6d_A 6 MRLHDFVSKTVIKPESCVPCGKRIK 30 (61)
T ss_dssp BCCCCEEEEECCSCEECTTTCCEEC
T ss_pred ccceeEEeeeccCCcccccccCEEE
Confidence 4689999999999999999999886
No 16
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=97.27 E-value=0.00011 Score=54.83 Aligned_cols=26 Identities=23% Similarity=0.493 Sum_probs=24.5
Q ss_pred ecCCceeeeeecCCccccCCCCCccC
Q psy9785 38 NVKDHKFIPRFFKQPTFCSHCKDFIW 63 (63)
Q Consensus 38 ~v~GH~F~a~~f~qptfCa~C~efIW 63 (63)
..+||.|..+.|.+||+|++|+++||
T Consensus 515 ~~~~H~F~~~~~~~~t~C~~C~~~l~ 540 (587)
T 3ky9_A 515 TANGHDFQMFSFEETTSCKACQMLLR 540 (587)
T ss_dssp TGGGCCEEEECCSSCCBCTTTCSBCC
T ss_pred cccCCceeEEeCCCCccccccccccc
Confidence 45899999999999999999999998
No 17
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=97.05 E-value=0.00021 Score=50.49 Aligned_cols=26 Identities=23% Similarity=0.493 Sum_probs=24.4
Q ss_pred ecCCceeeeeecCCccccCCCCCccC
Q psy9785 38 NVKDHKFIPRFFKQPTFCSHCKDFIW 63 (63)
Q Consensus 38 ~v~GH~F~a~~f~qptfCa~C~efIW 63 (63)
.++||.|..+.|.+||+|.+|++++|
T Consensus 343 ~~~~h~f~~~~~~~~t~C~~C~~~~~ 368 (406)
T 2vrw_B 343 TANGHDFQMFSFEETTSCKACQMLLR 368 (406)
T ss_dssp TGGGCCEEEECCSSCCBCTTTCCBCC
T ss_pred cCCCCCCccccCCCCCCCccccchhc
Confidence 45899999999999999999999998
No 18
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A
Probab=96.92 E-value=0.00051 Score=37.73 Aligned_cols=23 Identities=17% Similarity=0.522 Sum_probs=20.6
Q ss_pred CCceeeeeecCCccccCCCCCccC
Q psy9785 40 KDHKFIPRFFKQPTFCSHCKDFIW 63 (63)
Q Consensus 40 ~GH~F~a~~f~qptfCa~C~efIW 63 (63)
-+|.|..+.|. +|+|.+|+++||
T Consensus 3 i~HrF~~~t~~-~t~C~~C~k~i~ 25 (49)
T 1kbe_A 3 VTHRFSTKSWL-SQVCNVCQKSMI 25 (49)
T ss_dssp CCCCEEEECCS-SCCCSSSCCSSC
T ss_pred CCcccCccCCC-CcCccccCceeE
Confidence 36999999887 699999999998
No 19
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=93.45 E-value=0.027 Score=42.43 Aligned_cols=24 Identities=38% Similarity=0.982 Sum_probs=21.7
Q ss_pred CCceeeeeecCCccccCCCCCccC
Q psy9785 40 KDHKFIPRFFKQPTFCSHCKDFIW 63 (63)
Q Consensus 40 ~GH~F~a~~f~qptfCa~C~efIW 63 (63)
..|.|+.+.+..|+||.+|+++||
T Consensus 101 ~~h~~~~~~~~~~~~C~~C~~~l~ 124 (674)
T 3pfq_A 101 SKHKFKIHTYSSPTFCDHCGSLLY 124 (674)
T ss_dssp -CCCCCEECCSSCCCCSSSCSCCB
T ss_pred CCcceeecCCCCCCCCCccccccc
Confidence 569999999999999999999876
No 20
>1r79_A Diacylglycerol kinase, delta; C1 domain, cystein-rich zinc binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: g.49.1.1
Probab=78.32 E-value=1.2 Score=26.34 Aligned_cols=25 Identities=12% Similarity=0.283 Sum_probs=21.3
Q ss_pred cCCceeeeeecCCccccCCCCCccC
Q psy9785 39 VKDHKFIPRFFKQPTFCSHCKDFIW 63 (63)
Q Consensus 39 v~GH~F~a~~f~qptfCa~C~efIW 63 (63)
+.-|.+++-.+..+++|+.|.+.+|
T Consensus 25 ~~~H~WveGNl~~~s~C~vC~k~c~ 49 (84)
T 1r79_A 25 AMPHQWLEGNLPVSAKCTVCDKTCG 49 (84)
T ss_dssp CBCCCEEESCCCTTCBCSSSCCBCC
T ss_pred cceeeEEccCCCCCCEeCCCCCEeC
Confidence 3569999999988999999998764
No 21
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=27.39 E-value=22 Score=20.93 Aligned_cols=26 Identities=12% Similarity=0.289 Sum_probs=22.4
Q ss_pred eecCCceeeeeecCCccccCCCCCcc
Q psy9785 37 YNVKDHKFIPRFFKQPTFCSHCKDFI 62 (63)
Q Consensus 37 h~v~GH~F~a~~f~qptfCa~C~efI 62 (63)
++..||.++...=..-.||..|.++|
T Consensus 63 ~~~t~H~~~~~l~~~~vwCy~cdd~V 88 (97)
T 2uzg_A 63 SQETKHYLTVNLTTLRVWCYACSKEV 88 (97)
T ss_dssp HHHTTCCEEEETTTTEEEETTTTEEE
T ss_pred hhhcCCcEEEECCCCCEEECCCCcEe
Confidence 35689999998888899999999875
No 22
>2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger, ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding protein, USP; NMR {Homo sapiens}
Probab=24.63 E-value=30 Score=21.39 Aligned_cols=23 Identities=13% Similarity=0.391 Sum_probs=20.0
Q ss_pred CCceeeeeecCCccccCCCCCcc
Q psy9785 40 KDHKFIPRFFKQPTFCSHCKDFI 62 (63)
Q Consensus 40 ~GH~F~a~~f~qptfCa~C~efI 62 (63)
.||.++..+=....+|..|.++|
T Consensus 84 t~H~l~~~l~t~~vwCY~cd~~V 106 (126)
T 2i50_A 84 EPHCLVLSLDNWSVWCYVCDNEV 106 (126)
T ss_dssp SCCCEEEETTTCCEEETTTTEEE
T ss_pred CCCcEEEECCCCeEEeCCCCcEE
Confidence 69999988777779999999876
No 23
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=22.89 E-value=49 Score=18.22 Aligned_cols=27 Identities=22% Similarity=0.566 Sum_probs=18.7
Q ss_pred eeecCCceeeeeecCCccccCCCCCccC
Q psy9785 36 VYNVKDHKFIPRFFKQPTFCSHCKDFIW 63 (63)
Q Consensus 36 Vh~v~GH~F~a~~f~qptfCa~C~efIW 63 (63)
.++..|+..+.+.+ .-.+|..|++-++
T Consensus 21 ~~~~~G~~~~I~~V-p~~~C~~CGE~~~ 47 (78)
T 3ga8_A 21 PYTFRGRKTVLKGI-HGLYCVHCEESIM 47 (78)
T ss_dssp EEEETTEEEEEEEE-EEEEETTTCCEEC
T ss_pred EEEECCEEEEEcCc-eeEECCCCCCEEE
Confidence 35668888766554 3458999998653
Done!