RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9785
(63 letters)
>gnl|CDD|215738 pfam00130, C1_1, Phorbol esters/diacylglycerol binding domain (C1
domain). This domain is also known as the Protein
kinase C conserved region 1 (C1) domain.
Length = 53
Score = 40.5 bits (95), Expect = 8e-07
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 42 HKFIPRFFKQPTFCSHCKDFIW 63
H F+ R FK PTFC HC +F+W
Sbjct: 1 HHFVHRTFKSPTFCDHCGEFLW 22
>gnl|CDD|237996 cd00029, C1, Protein kinase C conserved region 1 (C1) .
Cysteine-rich zinc binding domain. Some members of this
domain family bind phorbol esters and diacylglycerol,
some are reported to bind RasGTP. May occur in tandem
arrangement. Diacylglycerol (DAG) is a second
messenger, released by activation of Phospholipase D.
Phorbol Esters (PE) can act as analogues of DAG and
mimic its downstream effects in, for example, tumor
promotion. Protein Kinases C are activated by DAG/PE,
this activation is mediated by their N-terminal
conserved region (C1). DAG/PE binding may be
phospholipid dependent. C1 domains may also mediate
DAG/PE signals in chimaerins (a family of Rac GTPase
activating proteins), RasGRPs (exchange factors for
Ras/Rap1), and Munc13 isoforms (scaffolding proteins
involved in exocytosis).
Length = 50
Score = 36.3 bits (84), Expect = 4e-05
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 42 HKFIPRFFKQPTFCSHCKDFIW 63
H+F+ + F +PTFC C+ IW
Sbjct: 1 HRFVRKSFFKPTFCDVCRKSIW 22
>gnl|CDD|197519 smart00109, C1, Protein kinase C conserved region 1 (C1) domains
(Cysteine-rich domains). Some bind phorbol esters and
diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Length = 50
Score = 34.4 bits (79), Expect = 2e-04
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 42 HKFIPRFFKQPTFCSHCKDFIW 63
HK + R F +PTFC C+ IW
Sbjct: 1 HKHVFRTFTKPTFCCVCRKSIW 22
>gnl|CDD|188751 cd09365, LIM2_LIMK, The second LIM domain of LIMK (LIM domain
Kinase ). The second LIM domain of LIMK (LIM domain
Kinase ): LIMK protein family is comprised of two
members LIMK1 and LIMK2. LIMK contains two LIM domains,
a PDZ domain and a kinase domain. LIMK is involved in
the regulation of actin polymerization and microtubule
disassembly. LIMK influences architecture of the actin
cytoskeleton by regulating the activity of the cofilin
family proteins cofilin1, cofilin2, and destrin. The
mechanism of the activation is to phosphorylates
cofilin on serine 3 and inactivates its actin-severing
activity, and altering the rate of actin
depolymerization. LIMKs can function in both cytoplasm
and nucleus and are expressed in all tissues. Both
LIMK1 and LIMK2 can act in the nucleus to suppress
Rac/Cdc42-dependent cyclin D1 expression. However,
LIMK1 and LIMk2 have different cellular locations.
While LIMK1 localizes mainly at focal adhesions, LIMK2
is found in cytoplasmic punctae, suggesting that they
may have different cellular functions. The LIM domains
of LIMK have been shown to play an important role in
regulating kinase activity and likely also contribute
to LIMK function by acting as sites of
protein-to-protein interactions. All LIM domains are
50-60 amino acids in size and share two characteristic
zinc finger motifs. The two zinc fingers contain eight
conserved residues, mostly cysteines and histidines,
which coordinately bond to two zinc atoms. LIM domains
function as adaptors or scaffolds to support the
assembly of multimeric protein complexes.
Length = 54
Score = 26.9 bits (60), Expect = 0.21
Identities = 12/22 (54%), Positives = 12/22 (54%), Gaps = 4/22 (18%)
Query: 41 DHKFIPRFFKQPTFCSHCKDFI 62
DHKF P F CS CK FI
Sbjct: 17 DHKFHPECFS----CSSCKAFI 34
>gnl|CDD|165563 PHA03308, PHA03308, transcriptional regulator ICP4; Provisional.
Length = 1463
Score = 27.8 bits (61), Expect = 0.33
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 2 AEEENSNEENSANDMNTKFGLKIRGRKGALKKKNVYNVKDHK 43
+ EE+ +E+N D G K RGR+ + VY +D++
Sbjct: 1273 SSEEDGDEKNEKEDRERAGGGKRRGRQRLPIRDRVYRGRDYR 1314
>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein.
[Transport and binding proteins, Anions].
Length = 237
Score = 25.5 bits (56), Expect = 1.9
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 17 NTKFGLKIRGRKGALKKKNVYNV 39
N FGL+IR A K V +
Sbjct: 92 NIAFGLEIRKHPKAKIKARVEEL 114
>gnl|CDD|224662 COG1748, LYS9, Saccharopine dehydrogenase and related proteins
[Amino acid transport and metabolism].
Length = 389
Score = 24.6 bits (54), Expect = 3.8
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 18 TKFGLKIRGRKGALKKKNVYNVKDHKF 44
T G++++G K K YNVKDH
Sbjct: 292 TVIGVEVKGTKDGRDKTVFYNVKDHAE 318
>gnl|CDD|227554 COG5229, LOC7, Chromosome condensation complex Condensin, subunit H
[Chromatin structure and dynamics / Cell division and
chromosome partitioning].
Length = 662
Score = 24.0 bits (51), Expect = 7.8
Identities = 13/59 (22%), Positives = 17/59 (28%)
Query: 3 EEENSNEENSANDMNTKFGLKIRGRKGALKKKNVYNVKDHKFIPRFFKQPTFCSHCKDF 61
E + E D N + + R G + K I P F C DF
Sbjct: 88 EGLGGDIEIDDPDRNNTEERRKKQRVGKTTLVKFEKITIKKNICELNIDPLFKKRCVDF 146
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.134 0.418
Gapped
Lambda K H
0.267 0.0654 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 2,983,099
Number of extensions: 201365
Number of successful extensions: 169
Number of sequences better than 10.0: 1
Number of HSP's gapped: 169
Number of HSP's successfully gapped: 8
Length of query: 63
Length of database: 10,937,602
Length adjustment: 34
Effective length of query: 29
Effective length of database: 9,429,566
Effective search space: 273457414
Effective search space used: 273457414
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.4 bits)