RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9785
(63 letters)
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation,
transferase; HET: TPO SEP ANP; 4.00A {Rattus
norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Length = 674
Score = 66.2 bits (161), Expect = 4e-15
Identities = 29/39 (74%), Positives = 33/39 (84%)
Query: 25 RGRKGALKKKNVYNVKDHKFIPRFFKQPTFCSHCKDFIW 63
RKGAL++KNV+ VK+HKF RFFKQPTFCSHC DFIW
Sbjct: 21 FARKGALRQKNVHEVKNHKFTARFFKQPTFCSHCTDFIW 59
Score = 41.2 bits (96), Expect = 3e-06
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 42 HKFIPRFFKQPTFCSHCKDFIW 63
HKF + PTFC HC ++
Sbjct: 103 HKFKIHTYSSPTFCDHCGSLLY 124
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding,
DAG/PE-binding protein, diacylglycerol, phorbol ester,
TCR, T-cell, structural genomics; NMR {Homo sapiens}
Length = 77
Score = 61.3 bits (149), Expect = 5e-15
Identities = 20/37 (54%), Positives = 28/37 (75%)
Query: 27 RKGALKKKNVYNVKDHKFIPRFFKQPTFCSHCKDFIW 63
R+GA+K+ V++VK H+F FF QPTFCS C +F+W
Sbjct: 9 RRGAIKQAKVHHVKCHEFTATFFPQPTFCSVCHEFVW 45
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 83
Score = 58.3 bits (141), Expect = 1e-13
Identities = 20/39 (51%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 26 GRKG-ALKKKNVYNVKDHKFIPRFFKQPTFCSHCKDFIW 63
G G + K+ ++ +K+H+FI FF QPTFCS CKDF+W
Sbjct: 1 GSSGSSGKQAKIHYIKNHEFIATFFGQPTFCSVCKDFVW 39
>2db6_A SH3 and cysteine rich domain 3; STAC3, C1 domain, cystein-rich
domain, zinc-binding domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 74
Score = 45.3 bits (107), Expect = 1e-08
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 32 KKKNVYNVKDHKFIPRFFKQPTFCSHCKDFIW 63
+ + N K HKF FFK+P FC C I
Sbjct: 8 EPPKLVNDKPHKFKDHFFKKPKFCDVCARMIV 39
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto-
oncogene, zinc, ATP-binding, phorbol-ester binding; NMR
{Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Length = 52
Score = 44.7 bits (106), Expect = 1e-08
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 39 VKDHKFIPRFFKQPTFCSHCKDFIW 63
+ H F + F + FC C+ F+
Sbjct: 1 LTTHNFARKTFLKLAFCDICQKFLL 25
>2row_A RHO-associated protein kinase 2; ATP-binding, coiled coil,
cytoplasm, membrane, metal-binding, nucleotide-binding,
phorbol-ester binding; NMR {Rattus norvegicus}
Length = 84
Score = 42.8 bits (100), Expect = 1e-07
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 33 KKNVYNVKDHKFIPRFFKQPTFCSHCKDFIW 63
K N K H+FIP + PT C C +W
Sbjct: 16 KSNYICHKGHEFIPTLYHFPTNCEACMKPLW 46
>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain,
zinc-binding domain, endocytosis/exocytosis,signaling
protein complex; NMR {Rattus norvegicus}
Length = 66
Score = 41.7 bits (98), Expect = 3e-07
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 42 HKFIPRFFKQPTFCSHCKDFIW 63
H F PT+C C+ +W
Sbjct: 14 HNFEVWTATTPTYCYECEGLLW 35
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus
musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Length = 50
Score = 40.1 bits (94), Expect = 9e-07
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 42 HKFIPRFFKQPTFCSHCKDFIW 63
H+F + PTFC HC +W
Sbjct: 1 HRFKVYNYMSPTFCDHCGSLLW 22
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding,
DAG/PE-binding protein, diacylglycerol, phorbol ester,
TCR, T-cell, structural genomics; NMR {Homo sapiens}
Length = 65
Score = 40.1 bits (94), Expect = 1e-06
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 40 KDHKFIPRFFKQPTFCSHCKDFIW 63
H+F +K PTFC HC +W
Sbjct: 11 MPHRFKVYNYKSPTFCEHCGTLLW 34
>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 85
Score = 39.5 bits (92), Expect = 3e-06
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 40 KDHKFIPRFFKQPTFCSHCKDFIW 63
HKF + PTFC HC ++
Sbjct: 16 SKHKFKIHTYGSPTFCDHCGSLLY 39
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal
transduction, apoptosis, cysteine rich domain, metal
binding protein; NMR {Mus musculus}
Length = 59
Score = 37.2 bits (86), Expect = 2e-05
Identities = 5/25 (20%), Positives = 10/25 (40%), Gaps = 1/25 (4%)
Query: 40 KDHKFIP-RFFKQPTFCSHCKDFIW 63
+ H+F+ P +C C +
Sbjct: 9 EGHRFVELALRGGPGWCDLCGREVL 33
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction,
apoptosis, cysteine rich domain; NMR {Mus musculus}
Length = 72
Score = 36.5 bits (84), Expect = 4e-05
Identities = 5/25 (20%), Positives = 10/25 (40%), Gaps = 1/25 (4%)
Query: 40 KDHKFIP-RFFKQPTFCSHCKDFIW 63
+ H+F+ P +C C +
Sbjct: 22 EGHRFVELALRGGPGWCDLCGREVL 46
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC,
gtpas activation, metal-binding, phorbol-ester binding,
SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Length = 463
Score = 33.7 bits (77), Expect = 0.001
Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 2 AEEENSNEENSANDMNTKFGLKIRGRKGALKKKNVYNV-KDHKFIPRFFKQPTFCSHCKD 60
E + + + ++ K + R + + + K H F F+ P +C +C +
Sbjct: 169 KETHDERDSTGQDGVSEKRLTSLVRRATLKENEQIPKYEKIHNFKVHTFRGPHWCEYCAN 228
Query: 61 FIW 63
F+W
Sbjct: 229 FMW 231
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding,
metal-binding, phosphoprotein, exchange factor, RAC,
GTPase, membrane domain; 1.85A {Mus musculus} PDB:
3bji_A 1f5x_A
Length = 406
Score = 25.9 bits (57), Expect = 0.89
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 40 KDHKFIPRFFKQPTFCSHCKDFIW 63
H F F++ T C C+ +
Sbjct: 345 NGHDFQMFSFEETTSCKACQMLLR 368
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain,
pleckst homology domain, C1 domain, guanine-nucleotide
releasing FA metal-binding; 2.73A {Homo sapiens} PDB:
2d86_A
Length = 587
Score = 25.0 bits (54), Expect = 1.5
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 40 KDHKFIPRFFKQPTFCSHCKDFIW 63
H F F++ T C C+ +
Sbjct: 517 NGHDFQMFSFEETTSCKACQMLLR 540
>3jr7_A Uncharacterized EGV family protein COG1307; structural genomics,
PSI2, MCSG, protein struct initiative; HET: PG6; 2.00A
{Ruminococcus gnavus}
Length = 298
Score = 23.7 bits (52), Expect = 5.1
Identities = 7/11 (63%), Positives = 7/11 (63%)
Query: 23 KIRGRKGALKK 33
K RG K AL K
Sbjct: 222 KARGMKKALVK 232
>1pzx_A Hypothetical protein APC36103; structural genomics, two domains
containing mixed alpha/beta structures, PSI; HET: PLM;
2.00A {Geobacillus stearothermophilus} SCOP: c.119.1.1
Length = 289
Score = 23.7 bits (52), Expect = 5.3
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 23 KIRGRKGALKK 33
K RGRK LK+
Sbjct: 206 KWRGRKKVLKR 216
>3pl5_A SMU_165, putative uncharacterized protein; fatty acid binding
protein, lipid binding protein; HET: PLM; 2.04A
{Streptococcus mutans}
Length = 320
Score = 23.4 bits (51), Expect = 5.4
Identities = 6/11 (54%), Positives = 9/11 (81%)
Query: 23 KIRGRKGALKK 33
K+RGRK +K+
Sbjct: 241 KLRGRKKGMKE 251
>1mgp_A Hypothetical protein TM841; two domain structure with mixed
alpha/beta structures in BOTH domains, structural
genomics; HET: PLM; 2.00A {Thermotoga maritima} SCOP:
c.119.1.1 PDB: 1vpv_A*
Length = 313
Score = 23.4 bits (51), Expect = 5.8
Identities = 5/11 (45%), Positives = 8/11 (72%)
Query: 23 KIRGRKGALKK 33
K+RG K A++
Sbjct: 230 KVRGDKKAIEA 240
>3lup_A DEGV family protein; PSI-2, MCSG, structural genomics, fatty acid
binding, protei structure initiative; HET: ELA; 2.65A
{Streptococcus agalactiae}
Length = 285
Score = 23.3 bits (51), Expect = 5.9
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 23 KIRGRKGALKK 33
K+R K ALK+
Sbjct: 206 KVRTEKKALKR 216
>3fdj_A DEGV family protein; GUT microbiome, structural genomics, PSI-2,
protein ST initiative, midwest center for structural
genomics, MCSG; HET: MSE P6G PG4; 1.80A {Eubacterium
eligens}
Length = 278
Score = 23.3 bits (51), Expect = 6.5
Identities = 6/11 (54%), Positives = 6/11 (54%)
Query: 23 KIRGRKGALKK 33
K RG K L K
Sbjct: 201 KCRGDKKLLVK 211
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.418
Gapped
Lambda K H
0.267 0.0745 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 889,428
Number of extensions: 36095
Number of successful extensions: 89
Number of sequences better than 10.0: 1
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 23
Length of query: 63
Length of database: 6,701,793
Length adjustment: 34
Effective length of query: 29
Effective length of database: 5,752,479
Effective search space: 166821891
Effective search space used: 166821891
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.4 bits)