RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9785
         (63 letters)



>d1xa6a3 g.49.1.1 (A:209-270) Beta-chimaerin, middle domain {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 62

 Score = 37.7 bits (87), Expect = 3e-06
 Identities = 9/24 (37%), Positives = 14/24 (58%)

Query: 40 KDHKFIPRFFKQPTFCSHCKDFIW 63
          K H F    F+ P +C +C +F+W
Sbjct: 3  KTHNFKVHTFRGPHWCEYCANFMW 26


>d1faqa_ g.49.1.1 (A:) RAF-1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 52

 Score = 36.1 bits (83), Expect = 1e-05
 Identities = 7/25 (28%), Positives = 12/25 (48%)

Query: 39 VKDHKFIPRFFKQPTFCSHCKDFIW 63
          +  H F  + F +  FC  C+ F+ 
Sbjct: 1  LTTHNFARKTFLKLAFCDICQKFLL 25


>d1ptqa_ g.49.1.1 (A:) Protein kinase C-delta (PKCdelta) {Mouse
          (Mus musculus) [TaxId: 10090]}
          Length = 50

 Score = 36.2 bits (83), Expect = 1e-05
 Identities = 9/22 (40%), Positives = 12/22 (54%)

Query: 42 HKFIPRFFKQPTFCSHCKDFIW 63
          H+F    +  PTFC HC   +W
Sbjct: 1  HRFKVYNYMSPTFCDHCGSLLW 22


>d1tbna_ g.49.1.1 (A:) Protein kinase c-gamma {Rat (Rattus rattus)
          [TaxId: 10117]}
          Length = 66

 Score = 35.8 bits (82), Expect = 2e-05
 Identities = 9/24 (37%), Positives = 12/24 (50%)

Query: 40 KDHKFIPRFFKQPTFCSHCKDFIW 63
            HKF    +  PTFC HC   ++
Sbjct: 7  NKHKFRLHSYSSPTFCDHCGSLLY 30


>d1r79a_ g.49.1.1 (A:) Diacylglycerol kinase delta {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 84

 Score = 35.0 bits (80), Expect = 7e-05
 Identities = 3/22 (13%), Positives = 7/22 (31%)

Query: 42 HKFIPRFFKQPTFCSHCKDFIW 63
          H+++         C+ C     
Sbjct: 28 HQWLEGNLPVSAKCTVCDKTCG 49


>d1kbea_ g.49.1.1 (A:) Kinase suppressor of Ras, Ksr {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 49

 Score = 31.3 bits (71), Expect = 7e-04
 Identities = 4/22 (18%), Positives = 10/22 (45%), Gaps = 1/22 (4%)

Query: 42 HKFIPRFFKQPTFCSHCKDFIW 63
          H+F  + +     C+ C+  + 
Sbjct: 5  HRFSTKSWLSQV-CNVCQKSMI 25


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.134    0.418 

Gapped
Lambda     K      H
   0.267   0.0554    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 228,544
Number of extensions: 8100
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 9
Length of query: 63
Length of database: 2,407,596
Length adjustment: 32
Effective length of query: 31
Effective length of database: 1,968,236
Effective search space: 61015316
Effective search space used: 61015316
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.3 bits)