BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy979
(176 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OMX|A Chain A, Crystal Structure Of Mouse Alpha-1,4-N-
Acetylhexosaminyltransferase (Extl2)
pdb|1OMX|B Chain B, Crystal Structure Of Mouse Alpha-1,4-N-
Acetylhexosaminyltransferase (Extl2)
pdb|1OMZ|A Chain A, Crystal Structure Of Mouse Alpha-1,4-N-
Acetylhexosaminyltransferase (Extl2) In Complex With
Udpgalnac
pdb|1OMZ|B Chain B, Crystal Structure Of Mouse Alpha-1,4-N-
Acetylhexosaminyltransferase (Extl2) In Complex With
Udpgalnac
pdb|1ON6|A Chain A, Crystal Structure Of Mouse Alpha-1,4-N-
Acetylhexosaminotransferase (Extl2) In Complex With
Udpglcnac
pdb|1ON6|B Chain B, Crystal Structure Of Mouse Alpha-1,4-N-
Acetylhexosaminotransferase (Extl2) In Complex With
Udpglcnac
pdb|1ON8|A Chain A, Crystal Structure Of Mouse
Alpha-1,4-N-Acetylhexosaminyltransferase (Extl2) With
Udp And Glcuab(1-3)galb(1-O)-Naphthalenelmethanol An
Acceptor Substrate Analog
pdb|1ON8|B Chain B, Crystal Structure Of Mouse
Alpha-1,4-N-Acetylhexosaminyltransferase (Extl2) With
Udp And Glcuab(1-3)galb(1-O)-Naphthalenelmethanol An
Acceptor Substrate Analog
Length = 293
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 69/194 (35%), Gaps = 73/194 (37%)
Query: 27 DRVHSLFLLMEQLALVPSVSKILVIWNNQAKSPP----------PVSKWPKISKSWTIIR 76
+R L L+ VPS+ K++V+WNN + P P+ P I K T
Sbjct: 38 NRTDLLLRLLNHYQAVPSLHKVIVVWNNVGEKGPEELWNSLGPHPI---PVIFKPQT--- 91
Query: 77 TDENKLSKRFYPYAEIETEAVLSIDDDITMLTPDELEFGFEYWN---------------- 120
NK+ R + E+ET AVL +DDD T+++ +L F F W
Sbjct: 92 --ANKMRNRLQVFPEVETNAVLMVDDD-TLISAQDLVFAFSIWQQFPDQIIGFVPRKHVS 148
Query: 121 -----YMYTA---------------------------------HMPTPIRTYVDSHMNCE 142
Y Y P + +D NC+
Sbjct: 149 TSSGIYSYGGFELQTPGPGNGDQYSMVLIGASFFNSKYLELFQKQPAAVHALIDETQNCD 208
Query: 143 DIAMNFLVAHITAK 156
DIAMNFLV T K
Sbjct: 209 DIAMNFLVTRHTGK 222
>pdb|2WP4|A Chain A, Crystal Structure Of Rv3119 From Mycobacterium
Tuberculosis
pdb|2WP4|B Chain B, Crystal Structure Of Rv3119 From Mycobacterium
Tuberculosis
Length = 147
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 16/92 (17%)
Query: 80 NKLSKRFYPYAEIETEAVLSIDDDITMLTPDEL-------------EFGFEYWNYMYTAH 126
N +++ YPY + T+ LS+D+ + ++ E G + Y A+
Sbjct: 3 NVVAEGAYPYCRL-TDQPLSVDEVLAAVSGPEQGGIVIFVGNVRDHNAGHDVTRLFYEAY 61
Query: 127 MPTPIRTYVDSHMNCEDIA--MNFLVAHITAK 156
P IRT + CED A + VAH T +
Sbjct: 62 PPMVIRTLMSIIGRCEDKAEGVRVAVAHRTGE 93
>pdb|2R8V|A Chain A, Native Structure Of N-Acetylglutamate Synthase From
Neisseria Gonorrhoeae
pdb|3B8G|A Chain A, Crysta Structure Of N-Acetylglutamate Synthase From
Neisseria Gonorrhoeae Complexed With Coenzyme A And
N-Acetyl-Glutamate
pdb|3D2P|A Chain A, Crystal Structure Of N-acetylglutamate Synthase From
Neisseria Gonorrhoeae Complexed With Coenzyme A And
L-arginine
pdb|3D2P|B Chain B, Crystal Structure Of N-acetylglutamate Synthase From
Neisseria Gonorrhoeae Complexed With Coenzyme A And
L-arginine
pdb|3D2M|A Chain A, Crystal Structure Of N-Acetylglutamate Synthase From
Neisseria Gonorrhoeae Complexed With Coenzyme A And
L-Glutamate
pdb|4I49|A Chain A, Structure Of Ngnags Bound With Bisubstrate Analog Coa-Nag
Length = 456
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 136 DSHMNCEDIAMNFLVAHITAKAPFIHSIRAHCTASGIEELL 176
SHMN D VAH AP+I +R +GI+ L
Sbjct: 18 GSHMNAPD----SFVAHFREAAPYIRQMRGTTLVAGIDGRL 54
>pdb|3ILV|A Chain A, Crystal Structure Of A Glutamine-Dependent Nad(+)
Synthetase From Cytophaga Hutchinsonii
Length = 634
Score = 26.9 bits (58), Expect = 6.0, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Query: 89 YAEIETEAVLSIDDDITMLTPDELEFGFEYW 119
YA+I T+ S + T+LT D+LE FE+W
Sbjct: 260 YADIATD---SAETPETVLTQDDLEKEFEFW 287
>pdb|1RP1|A Chain A, Dog Pancreatic Lipase Related Protein 1
Length = 450
Score = 26.6 bits (57), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/59 (20%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 42 VPSVSKILVIWNNQAKSPPPVSKWPKISKSWTIIRTDENKLSKRFYPYAEIETEAVLSI 100
V ++ K+ +WNN +P +PK+ + ++ E K F + + + +L++
Sbjct: 393 VGTIEKVKFLWNNNVVNP----TFPKVGAAKITVQKGEEKTVHSFCSESTVREDVLLTL 447
>pdb|3P0U|A Chain A, Crystal Structure Of The Ligand Binding Domain Of Human
Testicular Receptor 4
pdb|3P0U|B Chain B, Crystal Structure Of The Ligand Binding Domain Of Human
Testicular Receptor 4
Length = 249
Score = 26.2 bits (56), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 127 MPTPIRTYVDSHMNCEDIA-MNFLVAHITAKAPFIHSIRAHCTAS 170
MP+P+ Y++ H CE + + FL H P ++ C S
Sbjct: 26 MPSPMPEYLNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTS 70
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,329,522
Number of Sequences: 62578
Number of extensions: 202649
Number of successful extensions: 365
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 362
Number of HSP's gapped (non-prelim): 9
length of query: 176
length of database: 14,973,337
effective HSP length: 92
effective length of query: 84
effective length of database: 9,216,161
effective search space: 774157524
effective search space used: 774157524
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)