Query psy979
Match_columns 176
No_of_seqs 107 out of 263
Neff 5.5
Searched_HMMs 46136
Date Fri Aug 16 19:47:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy979.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/979hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1022|consensus 100.0 7.1E-54 1.5E-58 391.2 11.8 160 12-172 438-650 (691)
2 PF09258 Glyco_transf_64: Glyc 100.0 4.1E-54 8.9E-59 364.4 8.7 145 19-165 1-194 (247)
3 KOG2264|consensus 100.0 2.1E-52 4.7E-57 383.9 11.1 151 17-169 649-849 (907)
4 cd04184 GT2_RfbC_Mx_like Myxoc 96.4 0.0064 1.4E-07 47.3 5.1 97 18-117 2-106 (202)
5 PF00535 Glycos_transf_2: Glyc 96.4 0.00058 1.3E-08 50.3 -0.9 95 20-117 1-101 (169)
6 cd06439 CESA_like_1 CESA_like_ 96.3 0.0062 1.3E-07 49.4 4.4 100 15-117 27-132 (251)
7 cd06437 CESA_CaSu_A2 Cellulose 95.9 0.017 3.6E-07 46.6 5.3 94 18-115 2-108 (232)
8 PF13641 Glyco_tranf_2_3: Glyc 95.8 0.006 1.3E-07 48.6 2.4 97 17-115 1-107 (228)
9 cd02525 Succinoglycan_BP_ExoA 95.8 0.019 4.1E-07 45.8 5.2 97 18-117 1-104 (249)
10 cd06434 GT2_HAS Hyaluronan syn 95.6 0.027 5.9E-07 44.9 5.4 95 19-117 2-100 (235)
11 cd04186 GT_2_like_c Subfamily 95.5 0.027 5.8E-07 41.7 4.7 95 21-117 1-97 (166)
12 cd06423 CESA_like CESA_like is 95.2 0.037 7.9E-07 40.3 4.6 92 21-115 1-99 (180)
13 cd06421 CESA_CelA_like CESA_Ce 95.2 0.03 6.5E-07 44.4 4.3 97 18-117 2-107 (234)
14 cd04192 GT_2_like_e Subfamily 94.9 0.033 7.1E-07 43.8 3.8 94 21-117 1-105 (229)
15 cd04185 GT_2_like_b Subfamily 94.9 0.051 1.1E-06 42.5 4.8 93 21-117 1-102 (202)
16 cd02522 GT_2_like_a GT_2_like_ 94.3 0.11 2.3E-06 41.0 5.3 94 19-117 1-95 (221)
17 PRK11204 N-glycosyltransferase 93.4 0.1 2.2E-06 46.3 4.1 100 15-117 52-157 (420)
18 cd02511 Beta4Glucosyltransfera 93.0 0.18 3.9E-06 41.1 4.8 93 18-117 1-94 (229)
19 cd06433 GT_2_WfgS_like WfgS an 92.9 0.078 1.7E-06 40.4 2.4 91 20-115 1-96 (202)
20 cd02510 pp-GalNAc-T pp-GalNAc- 92.8 0.2 4.4E-06 42.4 5.0 95 20-117 1-106 (299)
21 cd02526 GT2_RfbF_like RfbF is 92.8 0.4 8.6E-06 38.2 6.5 90 21-116 1-97 (237)
22 cd02514 GT13_GLCNAC-TI GT13_GL 91.7 0.25 5.5E-06 44.2 4.4 92 20-114 3-117 (334)
23 cd06420 GT2_Chondriotin_Pol_N 91.7 0.41 8.8E-06 36.5 5.0 94 21-117 1-102 (182)
24 cd04196 GT_2_like_d Subfamily 91.3 0.91 2E-05 35.1 6.8 95 20-117 1-102 (214)
25 cd06442 DPM1_like DPM1_like re 91.3 0.26 5.6E-06 38.9 3.7 94 21-117 1-101 (224)
26 TIGR03472 HpnI hopanoid biosyn 90.7 0.81 1.8E-05 40.5 6.6 97 15-116 39-148 (373)
27 cd02520 Glucosylceramide_synth 90.6 0.3 6.4E-06 38.5 3.5 97 17-117 1-109 (196)
28 cd00761 Glyco_tranf_GTA_type G 90.1 0.3 6.4E-06 34.6 2.7 92 21-115 1-98 (156)
29 TIGR03111 glyc2_xrt_Gpos1 puta 89.5 0.76 1.6E-05 41.7 5.5 101 14-116 46-153 (439)
30 cd06435 CESA_NdvC_like NdvC_li 88.9 0.89 1.9E-05 36.3 5.0 96 20-117 1-107 (236)
31 cd04195 GT2_AmsE_like GT2_AmsE 88.5 0.55 1.2E-05 36.4 3.5 95 20-117 1-103 (201)
32 cd04179 DPM_DPG-synthase_like 88.4 0.4 8.7E-06 36.5 2.6 94 21-117 1-102 (185)
33 TIGR01556 rhamnosyltran L-rham 88.4 0.84 1.8E-05 38.1 4.7 89 25-117 2-96 (281)
34 COG0463 WcaA Glycosyltransfera 87.6 1 2.2E-05 32.1 4.1 95 16-114 2-102 (291)
35 TIGR03469 HonB hopene-associat 87.5 1.1 2.5E-05 39.7 5.3 100 15-117 38-156 (384)
36 cd06913 beta3GnTL1_like Beta 1 86.9 1.4 3E-05 35.0 5.0 92 21-116 1-106 (219)
37 PRK10073 putative glycosyl tra 86.6 1.6 3.6E-05 38.1 5.7 98 16-116 5-107 (328)
38 COG1216 Predicted glycosyltran 86.2 2 4.4E-05 36.7 6.0 99 16-117 2-107 (305)
39 PRK10018 putative glycosyl tra 86.2 1.2 2.6E-05 38.3 4.5 99 16-117 4-108 (279)
40 cd04187 DPM1_like_bac Bacteria 83.9 1.1 2.4E-05 34.3 3.0 95 21-118 1-104 (181)
41 cd06427 CESA_like_2 CESA_like_ 82.3 2.6 5.6E-05 34.2 4.7 97 18-117 2-107 (241)
42 PRK10714 undecaprenyl phosphat 81.7 2.9 6.3E-05 36.6 5.1 100 16-118 5-114 (325)
43 PLN02726 dolichyl-phosphate be 77.8 4.9 0.00011 32.7 5.0 97 14-117 6-116 (243)
44 cd06438 EpsO_like EpsO protein 76.2 3.4 7.5E-05 31.9 3.5 94 21-117 1-104 (183)
45 PRK10063 putative glycosyl tra 75.9 7.5 0.00016 32.5 5.7 86 18-105 2-95 (248)
46 PF05060 MGAT2: N-acetylglucos 67.8 8.2 0.00018 35.1 4.3 41 15-55 29-69 (356)
47 KOG2791|consensus 66.3 9.8 0.00021 35.0 4.5 43 13-55 113-155 (455)
48 PRK14583 hmsR N-glycosyltransf 64.8 13 0.00028 33.7 5.1 97 16-116 74-177 (444)
49 PTZ00260 dolichyl-phosphate be 64.7 24 0.00053 30.9 6.6 102 13-117 66-185 (333)
50 cd04188 DPG_synthase DPG_synth 60.8 20 0.00044 28.1 5.0 94 21-117 1-105 (211)
51 TIGR03030 CelA cellulose synth 60.6 16 0.00035 35.5 5.2 101 15-117 129-251 (713)
52 PRK13915 putative glucosyl-3-p 58.3 17 0.00036 31.7 4.4 100 15-116 29-138 (306)
53 cd04888 ACT_PheB-BS C-terminal 54.2 33 0.00071 22.6 4.5 34 18-51 42-75 (76)
54 PF10111 Glyco_tranf_2_2: Glyc 49.4 20 0.00043 30.3 3.4 94 20-117 1-111 (281)
55 cd04191 Glucan_BSP_ModH Glucan 40.2 1E+02 0.0022 26.0 6.3 93 19-117 1-118 (254)
56 cd06436 GlcNAc-1-P_transferase 40.2 39 0.00085 26.4 3.6 93 21-117 1-112 (191)
57 PRK11498 bcsA cellulose syntha 31.0 1.3E+02 0.0027 30.6 6.1 94 15-115 258-360 (852)
58 COG3062 NapD Uncharacterized p 28.0 1.5E+02 0.0032 22.2 4.6 39 18-56 42-80 (94)
59 PF08078 PsaX: PsaX family; I 27.0 42 0.0009 20.8 1.3 10 144-153 23-32 (37)
60 PRK15039 transcriptional repre 26.1 78 0.0017 23.2 2.9 22 130-151 24-45 (90)
61 PF02583 Trns_repr_metal: Meta 24.3 69 0.0015 22.8 2.3 22 130-151 20-41 (85)
62 PRK15489 nfrB bacteriophage N4 24.0 2.3E+02 0.005 28.1 6.5 100 12-114 66-183 (703)
63 PRK06455 riboflavin synthase; 23.8 1.4E+02 0.003 24.2 4.2 38 17-54 2-39 (155)
64 PRK04435 hypothetical protein; 23.4 1.7E+02 0.0037 22.8 4.6 35 17-51 110-144 (147)
65 cd06403 PB1_Par6 The PB1 domai 23.4 1.5E+02 0.0033 21.5 3.8 44 13-57 8-51 (80)
66 cd02516 CDP-ME_synthetase CDP- 20.7 70 0.0015 25.3 1.9 91 26-117 25-119 (218)
67 COG1215 Glycosyltransferases, 20.3 2E+02 0.0044 25.0 4.9 96 16-117 53-160 (439)
68 cd04190 Chitin_synth_C C-termi 20.0 2.3E+02 0.005 23.0 4.9 80 21-117 1-96 (244)
No 1
>KOG1022|consensus
Probab=100.00 E-value=7.1e-54 Score=391.24 Aligned_cols=160 Identities=48% Similarity=0.740 Sum_probs=151.5
Q ss_pred hhcCCCceEEEEeccCCchHHHHHHHHHhcCCCcceEEEEecCCCCCCCCCCCCCCCCCceEEEeCCCcccccccCCCCC
Q psy979 12 IAGSTVRKYIPHDCIDRVHSLFLLMEQLALVPSVSKILVIWNNQAKSPPPVSKWPKISKSWTIIRTDENKLSKRFYPYAE 91 (176)
Q Consensus 12 ~~~~~~r~~i~i~Ty~R~~~L~~~l~~~~~~p~l~~IvVvWn~~~~~pP~~~~~p~~~vpV~v~~~~~nsLnnRF~P~~~ 91 (176)
++|....+|.+|+||+|.++|+++|+||++||+|+||+|||||.+..||+++.||.+++|+++++++.|||||||.|+++
T Consensus 438 ik~~~qgFTlim~TYdR~d~L~k~v~~ys~vPsL~kIlVVWNnq~k~PP~es~~~~~~VPlr~r~qkeNsLnNRF~~~pe 517 (691)
T KOG1022|consen 438 IKGHSQGFTLIMLTYDRVDLLKKLVKHYSRVPSLKKILVVWNNQGKNPPPESLEPDIAVPLRFRQQKENSLNNRFEPYPE 517 (691)
T ss_pred CCCcccceeeeeehHHHHHHHHHHHHHHhhCCCcceEEEEecCCCCCCChhhccccCCccEEEEehhhhhhhcccccCcc
Confidence 57888999999999999999999999999999999999999999889999989999999999999999999999999999
Q ss_pred CCcceEEEeeCCCCCCChHHHHHHhh------------------------------------------------hccccc
Q psy979 92 IETEAVLSIDDDITMLTPDELEFGFE------------------------------------------------YWNYMY 123 (176)
Q Consensus 92 I~T~AVlslDDDv~~l~~~eLeFaF~------------------------------------------------~y~~~Y 123 (176)
|||+|||++|||+.| .|+||+|||+ ||+++|
T Consensus 518 ieT~AVL~IDDDIim-~~ddldFgf~VWrefPD~lVGF~pR~H~~t~s~~k~~y~sewt~qySMVLtGAAFfhk~y~~lY 596 (691)
T KOG1022|consen 518 IETEAVLEIDDDIIM-PCDDLDFGFEVWREFPDRLVGFVPRFHVWTMSYSKWKYESEWTNQYSMVLTGAAFFHKKYLDLY 596 (691)
T ss_pred cccceeEEecCceee-ecchhHHHHHHHHhCccceeccCcceeecccccchhhheeecCCceEEEEechhHHHHHHHHHh
Confidence 999999999999985 6999999999 678999
Q ss_pred cccCcHhHHHHhcCCCChhHHHHHHHHHHhhCCCCeEeeeee-----eeccccc
Q psy979 124 TAHMPTPIRTYVDSHMNCEDIAMNFLVAHITAKAPFIHSIRA-----HCTASGI 172 (176)
Q Consensus 124 t~~lp~~ir~~VD~~~NCEDIaMNflVa~~T~~pPi~V~~r~-----~~~~~~~ 172 (176)
++.||+.+|++||++|||||||||||+|++||+|+|||++|+ .|++.++
T Consensus 597 t~~mPa~ir~~vDe~~NCEDIAMNFLiANatg~~aI~Vkp~~~~~~~~~sg~~g 650 (691)
T KOG1022|consen 597 TSDMPADIRVFVDEHMNCEDIAMNFLIANATGKPAIKVKPRKKFKCPECSGVAG 650 (691)
T ss_pred hhcccchHHHhhhcccCHHHHHHHHHhhhccCCCceEEeCcccccCccccccee
Confidence 999999999999999999999999999999999999999996 5555544
No 2
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=100.00 E-value=4.1e-54 Score=364.38 Aligned_cols=145 Identities=48% Similarity=0.823 Sum_probs=120.6
Q ss_pred eEEEEec-cCCchHHHHHHHHHhcCCCcceEEEEecCCCCCCCCCCCCCCCCCceEEEeCCCcccccccCCCCCCCcceE
Q psy979 19 KYIPHDC-IDRVHSLFLLMEQLALVPSVSKILVIWNNQAKSPPPVSKWPKISKSWTIIRTDENKLSKRFYPYAEIETEAV 97 (176)
Q Consensus 19 ~~i~i~T-y~R~~~L~~~l~~~~~~p~l~~IvVvWn~~~~~pP~~~~~p~~~vpV~v~~~~~nsLnnRF~P~~~I~T~AV 97 (176)
+|++|+| |+|.+.|+++|+||++||+|+||+||||++ .+||+...|+..++||+++++++|||||||+|+++|+|+||
T Consensus 1 fTvvi~t~~~R~~~L~~~l~~l~~~~~l~~IvVvWn~~-~~~P~~~~~~~~~vpV~~~~~~~nsLnnRF~p~~~i~T~AV 79 (247)
T PF09258_consen 1 FTVVINTSYKRSDLLKRLLRHLASSPSLRKIVVVWNNP-NPPPPSSKWPSTGVPVRVVRSSRNSLNNRFLPDPEIETDAV 79 (247)
T ss_dssp EEEEEEE-SS-HHHHHHHHHHHTTSTTEEEEEEEEE-T-S--THHHHHT---S-EEEEEESSHHGGGGGS--TT--SSEE
T ss_pred CEEEEEecccchHHHHHHHHHHHcCCCCCeEEEEeCCC-CCCCcccccCCCCceEEEEecCCccHHhcCcCccccCcceE
Confidence 6999999 999999999999999999999999999995 56665568888899999999999999999999999999999
Q ss_pred EEeeCCCCCCChHHHHHHhh------------------------------------------------hccccccccCcH
Q psy979 98 LSIDDDITMLTPDELEFGFE------------------------------------------------YWNYMYTAHMPT 129 (176)
Q Consensus 98 lslDDDv~~l~~~eLeFaF~------------------------------------------------~y~~~Yt~~lp~ 129 (176)
|++|||+. ++++||+|||+ +|+++|++.||+
T Consensus 80 l~~DDDv~-~~~~~l~faF~~W~~~pdrlVGf~~R~h~~~~~~~~~~Y~~~~~~~ySmvLt~aaf~h~~yl~~Y~~~~p~ 158 (247)
T PF09258_consen 80 LSLDDDVM-LSCDELEFAFQVWREFPDRLVGFPPRSHSWDPSSGRWKYTSEWSNEYSMVLTGAAFYHRYYLELYTHWLPA 158 (247)
T ss_dssp EEEETTEE-E-HHHHHHHHHHHCCSTTSEEES-EEEEEEE-ETTEEEEE-SSS--BSEE-TTEEEEETHHHHHHHT-S-H
T ss_pred EEecCCcc-cCHHHHHHHHHHHHhChhheeCCccceeecCCCccccccccCCCCcchhhhhhhHhhcchHHHHHhcCcHH
Confidence 99999996 89999999999 678999999999
Q ss_pred hHHHHhcCCCChhHHHHHHHHHHhhCCCCeEeeeee
Q psy979 130 PIRTYVDSHMNCEDIAMNFLVAHITAKAPFIHSIRA 165 (176)
Q Consensus 130 ~ir~~VD~~~NCEDIaMNflVa~~T~~pPi~V~~r~ 165 (176)
++|+|||+++||||||||||||++||+|||||++++
T Consensus 159 ~~r~~Vd~~~NCEDI~mNflvs~~T~~pPi~v~~~~ 194 (247)
T PF09258_consen 159 SIREYVDEHFNCEDIAMNFLVSNLTGKPPIKVTSRK 194 (247)
T ss_dssp HHHHHHHHHTS-HHHHHHHHHHHHHSS-SE--SSEE
T ss_pred HHHHHHhccCCHHHHHHHHHHHHhccCCCCcccccc
Confidence 999999999999999999999999999999999998
No 3
>KOG2264|consensus
Probab=100.00 E-value=2.1e-52 Score=383.91 Aligned_cols=151 Identities=45% Similarity=0.747 Sum_probs=144.5
Q ss_pred CceEEEEeccCCchHHHHHHHHHhcCCCcceEEEEecCCCCCCCCCCCCCCCCCceEEEeCCCcccccccCCCCCCCcce
Q psy979 17 VRKYIPHDCIDRVHSLFLLMEQLALVPSVSKILVIWNNQAKSPPPVSKWPKISKSWTIIRTDENKLSKRFYPYAEIETEA 96 (176)
Q Consensus 17 ~r~~i~i~Ty~R~~~L~~~l~~~~~~p~l~~IvVvWn~~~~~pP~~~~~p~~~vpV~v~~~~~nsLnnRF~P~~~I~T~A 96 (176)
+.+||+|+||+|.+.|...++.+.+.|+++||+||||++ ++||....||++++||.|++.++|||||||+|++.|+|+|
T Consensus 649 EQFTvVmLTYERe~VLm~sLeRL~gLPYLnKvvVVWNsp-k~P~ddl~WPdigvPv~viR~~~NsLNNRFlPwd~IETEA 727 (907)
T KOG2264|consen 649 EQFTVVMLTYEREAVLMGSLERLHGLPYLNKVVVVWNSP-KDPPDDLTWPDIGVPVEVIRVAENSLNNRFLPWDRIETEA 727 (907)
T ss_pred ceEEEEEEEehHHHHHHHHHHHhhCCcccceEEEEeCCC-CCChhcccCcCCCCceEEEEcccccccccccCchhhhhee
Confidence 358999999999999999999999999999999999999 4777777999999999999999999999999999999999
Q ss_pred EEEeeCCCCCCChHHHHHHhh------------------------------------------------hccccccccCc
Q psy979 97 VLSIDDDITMLTPDELEFGFE------------------------------------------------YWNYMYTAHMP 128 (176)
Q Consensus 97 VlslDDDv~~l~~~eLeFaF~------------------------------------------------~y~~~Yt~~lp 128 (176)
|||+|||+. +.++||-|||+ ||+|+||+.||
T Consensus 728 vLS~DDDah-LrhdEI~fgFRVWRE~RDRiVGFPgRyHAwd~p~~sw~YNSNysCelSMvLTGAAF~HKyYlylYtY~mP 806 (907)
T KOG2264|consen 728 VLSLDDDAH-LRHDEIIFGFRVWRENRDRIVGFPGRYHAWDGPHDSWFYNSNYSCELSMVLTGAAFIHKYYLYLYTYEMP 806 (907)
T ss_pred eeecccchh-hhhhheeeeeehhhhcccccccCCcccccccCCCcceeecCCcceEEeeeehhhHHHHHHHHHhhhhhch
Confidence 999999996 89999999999 89999999999
Q ss_pred HhHHHHhcCCCChhHHHHHHHHHHhhCCCCeEeeeee--eecc
Q psy979 129 TPIRTYVDSHMNCEDIAMNFLVAHITAKAPFIHSIRA--HCTA 169 (176)
Q Consensus 129 ~~ir~~VD~~~NCEDIaMNflVa~~T~~pPi~V~~r~--~~~~ 169 (176)
++||++||+.+|||||||||||||+||||||||++|| +|..
T Consensus 807 qaIRd~Vdey~NCEDIAMNfLVSHiTRKPPiKvTSRWTfrCPg 849 (907)
T KOG2264|consen 807 QAIRDHVDEYKNCEDIAMNFLVSHITRKPPIKVTSRWTFRCPG 849 (907)
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHhccCCCceeeceeEEeCCC
Confidence 9999999999999999999999999999999999999 6643
No 4
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=96.40 E-value=0.0064 Score=47.34 Aligned_cols=97 Identities=15% Similarity=0.092 Sum_probs=62.0
Q ss_pred ceEEEEeccCCc-hHHHHHHHHHhcCCCc-ceEEEEecCCCCCCCCCC----CCCCCCCceEEEeCCCcc-c-ccccCCC
Q psy979 18 RKYIPHDCIDRV-HSLFLLMEQLALVPSV-SKILVIWNNQAKSPPPVS----KWPKISKSWTIIRTDENK-L-SKRFYPY 89 (176)
Q Consensus 18 r~~i~i~Ty~R~-~~L~~~l~~~~~~p~l-~~IvVvWn~~~~~pP~~~----~~p~~~vpV~v~~~~~ns-L-nnRF~P~ 89 (176)
+++|+|.+|++. +.|.+.|+++.+..+- -+|+||.++.. .+... .+......++++..+.|. . .+|=.-.
T Consensus 2 ~vsiii~~~n~~~~~l~~~l~sl~~q~~~~~eiivvd~gs~--d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~ 79 (202)
T cd04184 2 LISIVMPVYNTPEKYLREAIESVRAQTYPNWELCIADDAST--DPEVKRVLKKYAAQDPRIKVVFREENGGISAATNSAL 79 (202)
T ss_pred eEEEEEecccCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCC--ChHHHHHHHHHHhcCCCEEEEEcccCCCHHHHHHHHH
Confidence 589999999999 9999999999654433 38999988852 21111 111112346666555432 1 1121222
Q ss_pred CCCCcceEEEeeCCCCCCChHHHHHHhh
Q psy979 90 AEIETEAVLSIDDDITMLTPDELEFGFE 117 (176)
Q Consensus 90 ~~I~T~AVlslDDDv~~l~~~eLeFaF~ 117 (176)
...+++-|+.+|+|.. +.++-|+.+-+
T Consensus 80 ~~a~~d~i~~ld~D~~-~~~~~l~~~~~ 106 (202)
T cd04184 80 ELATGEFVALLDHDDE-LAPHALYEVVK 106 (202)
T ss_pred HhhcCCEEEEECCCCc-CChHHHHHHHH
Confidence 3567899999999996 78876655544
No 5
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=96.38 E-value=0.00058 Score=50.26 Aligned_cols=95 Identities=21% Similarity=0.178 Sum_probs=64.3
Q ss_pred EEEEeccCCchHHHHHHHHHhc-CCCcceEEEEecCCCCCCCCC---CCCCCCCCceEEEeCCCcc--cccccCCCCCCC
Q psy979 20 YIPHDCIDRVHSLFLLMEQLAL-VPSVSKILVIWNNQAKSPPPV---SKWPKISKSWTIIRTDENK--LSKRFYPYAEIE 93 (176)
Q Consensus 20 ~i~i~Ty~R~~~L~~~l~~~~~-~p~l~~IvVvWn~~~~~pP~~---~~~p~~~vpV~v~~~~~ns--LnnRF~P~~~I~ 93 (176)
||+|.||++.+.|.++|+.+.+ ...-.+|+|+-|+.. +-.. ..+.....+++++..+.|. -.+|-.-.....
T Consensus 1 Svvip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~--d~~~~~~~~~~~~~~~i~~i~~~~n~g~~~~~n~~~~~a~ 78 (169)
T PF00535_consen 1 SVVIPTYNEAEYLERTLESLLKQTDPDFEIIVVDDGST--DETEEILEEYAESDPNIRYIRNPENLGFSAARNRGIKHAK 78 (169)
T ss_dssp EEEEEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS-S--SSHHHHHHHHHCCSTTEEEEEHCCCSHHHHHHHHHHHH--
T ss_pred CEEEEeeCCHHHHHHHHHHHhhccCCCEEEEEeccccc--cccccccccccccccccccccccccccccccccccccccc
Confidence 6999999999999999999864 467789999888851 1111 0111135789999887663 233444456788
Q ss_pred cceEEEeeCCCCCCChHHHHHHhh
Q psy979 94 TEAVLSIDDDITMLTPDELEFGFE 117 (176)
Q Consensus 94 T~AVlslDDDv~~l~~~eLeFaF~ 117 (176)
++-|+.+|||.. +.++-|+-..+
T Consensus 79 ~~~i~~ld~D~~-~~~~~l~~l~~ 101 (169)
T PF00535_consen 79 GEYILFLDDDDI-ISPDWLEELVE 101 (169)
T ss_dssp SSEEEEEETTEE-E-TTHHHHHHH
T ss_pred eeEEEEeCCCce-EcHHHHHHHHH
Confidence 999999999996 67766766666
No 6
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=96.26 E-value=0.0062 Score=49.38 Aligned_cols=100 Identities=16% Similarity=0.095 Sum_probs=63.9
Q ss_pred CCCceEEEEeccCCchHHHHHHHHHhcCCCc---ceEEEEecCCCCCCCCCCCCCCCCC-ceEEEeCCCc--ccccccCC
Q psy979 15 STVRKYIPHDCIDRVHSLFLLMEQLALVPSV---SKILVIWNNQAKSPPPVSKWPKISK-SWTIIRTDEN--KLSKRFYP 88 (176)
Q Consensus 15 ~~~r~~i~i~Ty~R~~~L~~~l~~~~~~p~l---~~IvVvWn~~~~~pP~~~~~p~~~v-pV~v~~~~~n--sLnnRF~P 88 (176)
+..+++|+|.+|++...|.+.|+++.+.... -+|+|+=++. ..........+.. .++++..+.| .-.+|-.-
T Consensus 27 ~~~~isVvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s--~d~t~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g 104 (251)
T cd06439 27 YLPTVTIIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGS--TDGTAEIAREYADKGVKLLRFPERRGKAAALNRA 104 (251)
T ss_pred CCCEEEEEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCC--CccHHHHHHHHhhCcEEEEEcCCCCChHHHHHHH
Confidence 4567999999999999999999998654332 3788884442 2222211111111 4777766544 23333333
Q ss_pred CCCCCcceEEEeeCCCCCCChHHHHHHhh
Q psy979 89 YAEIETEAVLSIDDDITMLTPDELEFGFE 117 (176)
Q Consensus 89 ~~~I~T~AVlslDDDv~~l~~~eLeFaF~ 117 (176)
.....+|-|+.+|+|.. +.++-|+-..+
T Consensus 105 i~~a~~d~i~~lD~D~~-~~~~~l~~l~~ 132 (251)
T cd06439 105 LALATGEIVVFTDANAL-LDPDALRLLVR 132 (251)
T ss_pred HHHcCCCEEEEEccccC-cCHHHHHHHHH
Confidence 45677899999999997 67766655544
No 7
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=95.91 E-value=0.017 Score=46.61 Aligned_cols=94 Identities=14% Similarity=0.097 Sum_probs=58.8
Q ss_pred ceEEEEeccCCchHHHHHHHHHhcCCCc---ceEEEEecCCCCCCCCCC-------CCCCCCCceEEEeCCCc-c--ccc
Q psy979 18 RKYIPHDCIDRVHSLFLLMEQLALVPSV---SKILVIWNNQAKSPPPVS-------KWPKISKSWTIIRTDEN-K--LSK 84 (176)
Q Consensus 18 r~~i~i~Ty~R~~~L~~~l~~~~~~p~l---~~IvVvWn~~~~~pP~~~-------~~p~~~vpV~v~~~~~n-s--Lnn 84 (176)
+++|+|.+|+..+.|.+.|+++.+..+. -+|+|+ ++ ... .... .++..+.+++++....+ . -.+
T Consensus 2 ~vSViIp~yNe~~~l~~~L~sl~~q~~~~~~~eIiVv-D~-s~D-~t~~~~~~~~~~~~~~~~~i~~~~~~~~~G~k~~a 78 (232)
T cd06437 2 MVTVQLPVFNEKYVVERLIEAACALDYPKDRLEIQVL-DD-STD-ETVRLAREIVEEYAAQGVNIKHVRRADRTGYKAGA 78 (232)
T ss_pred ceEEEEecCCcHHHHHHHHHHHHhcCCCccceEEEEE-EC-CCC-cHHHHHHHHHHHHhhcCCceEEEECCCCCCCchHH
Confidence 6899999999999999999999764443 367776 44 322 2110 11222456766653322 1 112
Q ss_pred ccCCCCCCCcceEEEeeCCCCCCChHHHHHH
Q psy979 85 RFYPYAEIETEAVLSIDDDITMLTPDELEFG 115 (176)
Q Consensus 85 RF~P~~~I~T~AVlslDDDv~~l~~~eLeFa 115 (176)
+=.-....+.+-|+.+|.|.. +.++-|+-.
T Consensus 79 ~n~g~~~a~~~~i~~~DaD~~-~~~~~l~~~ 108 (232)
T cd06437 79 LAEGMKVAKGEYVAIFDADFV-PPPDFLQKT 108 (232)
T ss_pred HHHHHHhCCCCEEEEEcCCCC-CChHHHHHh
Confidence 211223568999999999996 788766553
No 8
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=95.83 E-value=0.006 Score=48.62 Aligned_cols=97 Identities=19% Similarity=0.121 Sum_probs=50.2
Q ss_pred CceEEEEeccCCchHHHHHHHHHhcCCCcceEEEEecCCCCCCCCCCCC----CCC-CCceEEEeCCCcc-----ccccc
Q psy979 17 VRKYIPHDCIDRVHSLFLLMEQLALVPSVSKILVIWNNQAKSPPPVSKW----PKI-SKSWTIIRTDENK-----LSKRF 86 (176)
Q Consensus 17 ~r~~i~i~Ty~R~~~L~~~l~~~~~~p~l~~IvVvWn~~~~~pP~~~~~----p~~-~vpV~v~~~~~ns-----LnnRF 86 (176)
++++|+|.+|++.+.|.+.|+++.+..+-+--+||-.+.. ..+..... ... ...|+++....|. -.++-
T Consensus 1 P~v~Vvip~~~~~~~l~~~l~sl~~~~~~~~~v~vvd~~~-~~~~~~~~~~~~~~~~~~~v~vi~~~~~~g~~~k~~a~n 79 (228)
T PF13641_consen 1 PRVSVVIPAYNEDDVLRRCLESLLAQDYPRLEVVVVDDGS-DDETAEILRALAARYPRVRVRVIRRPRNPGPGGKARALN 79 (228)
T ss_dssp --EEEE--BSS-HHHHHHHHHHHTTSHHHTEEEEEEEE-S-SS-GCTTHHHHHHTTGG-GEEEEE----HHHHHHHHHHH
T ss_pred CEEEEEEEecCCHHHHHHHHHHHHcCCCCCeEEEEEECCC-ChHHHHHHHHHHHHcCCCceEEeecCCCCCcchHHHHHH
Confidence 4689999999999999999999987655333334444432 23322111 011 3467877654422 12222
Q ss_pred CCCCCCCcceEEEeeCCCCCCChHHHHHH
Q psy979 87 YPYAEIETEAVLSIDDDITMLTPDELEFG 115 (176)
Q Consensus 87 ~P~~~I~T~AVlslDDDv~~l~~~eLeFa 115 (176)
.-....+++-|+.+|||.. +.++-|+..
T Consensus 80 ~~~~~~~~d~i~~lD~D~~-~~p~~l~~~ 107 (228)
T PF13641_consen 80 EALAAARGDYILFLDDDTV-LDPDWLERL 107 (228)
T ss_dssp HHHHH---SEEEEE-SSEE-E-CHHHHHH
T ss_pred HHHHhcCCCEEEEECCCcE-ECHHHHHHH
Confidence 2233577999999999996 788777764
No 9
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=95.79 E-value=0.019 Score=45.78 Aligned_cols=97 Identities=11% Similarity=0.054 Sum_probs=60.5
Q ss_pred ceEEEEeccCCchHHHHHHHHHhcCC---CcceEEEEecCCCCCCCCCC---CCCCCCCceEEEeCCCcccc-cccCCCC
Q psy979 18 RKYIPHDCIDRVHSLFLLMEQLALVP---SVSKILVIWNNQAKSPPPVS---KWPKISKSWTIIRTDENKLS-KRFYPYA 90 (176)
Q Consensus 18 r~~i~i~Ty~R~~~L~~~l~~~~~~p---~l~~IvVvWn~~~~~pP~~~---~~p~~~vpV~v~~~~~nsLn-nRF~P~~ 90 (176)
|++|+|.||++.+.|.++|+++.+.. .--+|+|+ .+.+. ..... .+..-...|+++..+.+... ++=.-..
T Consensus 1 ~~sIiip~~n~~~~l~~~l~sl~~q~~~~~~~evivv-d~~s~-d~~~~~~~~~~~~~~~v~~i~~~~~~~~~a~N~g~~ 78 (249)
T cd02525 1 FVSIIIPVRNEEKYIEELLESLLNQSYPKDLIEIIVV-DGGST-DGTREIVQEYAAKDPRIRLIDNPKRIQSAGLNIGIR 78 (249)
T ss_pred CEEEEEEcCCchhhHHHHHHHHHhccCCCCccEEEEE-eCCCC-ccHHHHHHHHHhcCCeEEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999999996433 34578777 44322 21111 11212234777765443321 1111123
Q ss_pred CCCcceEEEeeCCCCCCChHHHHHHhh
Q psy979 91 EIETEAVLSIDDDITMLTPDELEFGFE 117 (176)
Q Consensus 91 ~I~T~AVlslDDDv~~l~~~eLeFaF~ 117 (176)
..++|-|+.+|+|.. ++++-|+-..+
T Consensus 79 ~a~~d~v~~lD~D~~-~~~~~l~~~~~ 104 (249)
T cd02525 79 NSRGDIIIRVDAHAV-YPKDYILELVE 104 (249)
T ss_pred HhCCCEEEEECCCcc-CCHHHHHHHHH
Confidence 458999999999996 78776766554
No 10
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=95.58 E-value=0.027 Score=44.91 Aligned_cols=95 Identities=14% Similarity=0.085 Sum_probs=59.9
Q ss_pred eEEEEeccCCc-hHHHHHHHHHhcCCCcceEEEEecCCCCCCCCCCCC--CCCCCceEEEeCCCc-ccccccCCCCCCCc
Q psy979 19 KYIPHDCIDRV-HSLFLLMEQLALVPSVSKILVIWNNQAKSPPPVSKW--PKISKSWTIIRTDEN-KLSKRFYPYAEIET 94 (176)
Q Consensus 19 ~~i~i~Ty~R~-~~L~~~l~~~~~~p~l~~IvVvWn~~~~~pP~~~~~--p~~~vpV~v~~~~~n-sLnnRF~P~~~I~T 94 (176)
.+|+|.||++. +.|.+.|+++.+.. -.+|+||=++. . .+..... ..-...++++..+.. .-+++-.-....++
T Consensus 2 isVvIp~~ne~~~~l~~~l~sl~~q~-~~eiivvdd~s-~-d~~~~~l~~~~~~~~~~v~~~~~~g~~~a~n~g~~~a~~ 78 (235)
T cd06434 2 VTVIIPVYDEDPDVFRECLRSILRQK-PLEIIVVTDGD-D-EPYLSILSQTVKYGGIFVITVPHPGKRRALAEGIRHVTT 78 (235)
T ss_pred eEEEEeecCCChHHHHHHHHHHHhCC-CCEEEEEeCCC-C-hHHHHHHHhhccCCcEEEEecCCCChHHHHHHHHHHhCC
Confidence 58999999999 99999999986543 45888884443 2 2222111 111223455543322 22333223345689
Q ss_pred ceEEEeeCCCCCCChHHHHHHhh
Q psy979 95 EAVLSIDDDITMLTPDELEFGFE 117 (176)
Q Consensus 95 ~AVlslDDDv~~l~~~eLeFaF~ 117 (176)
+-|+.+|+|.. +.++.|+-..+
T Consensus 79 d~v~~lD~D~~-~~~~~l~~l~~ 100 (235)
T cd06434 79 DIVVLLDSDTV-WPPNALPEMLK 100 (235)
T ss_pred CEEEEECCCce-eChhHHHHHHH
Confidence 99999999996 78887776665
No 11
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=95.49 E-value=0.027 Score=41.74 Aligned_cols=95 Identities=16% Similarity=0.099 Sum_probs=57.9
Q ss_pred EEEeccCCchHHHHHHHHHhcCCCcceEEEEecCCCCCCCCCCCCCCCCCceEEEeCCCc--ccccccCCCCCCCcceEE
Q psy979 21 IPHDCIDRVHSLFLLMEQLALVPSVSKILVIWNNQAKSPPPVSKWPKISKSWTIIRTDEN--KLSKRFYPYAEIETEAVL 98 (176)
Q Consensus 21 i~i~Ty~R~~~L~~~l~~~~~~p~l~~IvVvWn~~~~~pP~~~~~p~~~vpV~v~~~~~n--sLnnRF~P~~~I~T~AVl 98 (176)
|+|.+|+|.+.|.++++++.+...-..-+|+..+.+. .+...........++++..+.| .-.+|-.-.....++-|+
T Consensus 1 vii~~~~~~~~l~~~l~sl~~~~~~~~~iiivdd~s~-~~~~~~~~~~~~~~~~~~~~~~~g~~~a~n~~~~~~~~~~i~ 79 (166)
T cd04186 1 IIIVNYNSLEYLKACLDSLLAQTYPDFEVIVVDNAST-DGSVELLRELFPEVRLIRNGENLGFGAGNNQGIREAKGDYVL 79 (166)
T ss_pred CEEEecCCHHHHHHHHHHHHhccCCCeEEEEEECCCC-chHHHHHHHhCCCeEEEecCCCcChHHHhhHHHhhCCCCEEE
Confidence 5789999999999999999765432333444555332 2221111111223666665443 223333344566899999
Q ss_pred EeeCCCCCCChHHHHHHhh
Q psy979 99 SIDDDITMLTPDELEFGFE 117 (176)
Q Consensus 99 slDDDv~~l~~~eLeFaF~ 117 (176)
.+|||.. ++++.++-..+
T Consensus 80 ~~D~D~~-~~~~~l~~~~~ 97 (166)
T cd04186 80 LLNPDTV-VEPGALLELLD 97 (166)
T ss_pred EECCCcE-ECccHHHHHHH
Confidence 9999996 77776665555
No 12
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=95.23 E-value=0.037 Score=40.34 Aligned_cols=92 Identities=16% Similarity=0.191 Sum_probs=58.4
Q ss_pred EEEeccCCchHHHHHHHHHhcCC-CcceEEEEecCCCCCCCCCC---CCCCC-CCceEEEeCCCc--ccccccCCCCCCC
Q psy979 21 IPHDCIDRVHSLFLLMEQLALVP-SVSKILVIWNNQAKSPPPVS---KWPKI-SKSWTIIRTDEN--KLSKRFYPYAEIE 93 (176)
Q Consensus 21 i~i~Ty~R~~~L~~~l~~~~~~p-~l~~IvVvWn~~~~~pP~~~---~~p~~-~vpV~v~~~~~n--sLnnRF~P~~~I~ 93 (176)
|+|.||+|.+.|.++|+++.+.. .--+|+|+-++.. ..... .+... ...+.++....| .-.+|-.-.....
T Consensus 1 Viip~~n~~~~l~~~l~sl~~q~~~~~~iivvdd~s~--d~t~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~n~~~~~~~ 78 (180)
T cd06423 1 IIVPAYNEEAVIERTIESLLALDYPKLEVIVVDDGST--DDTLEILEELAALYIRRVLVVRDKENGGKAGALNAGLRHAK 78 (180)
T ss_pred CeecccChHHHHHHHHHHHHhCCCCceEEEEEeCCCc--cchHHHHHHHhccccceEEEEEecccCCchHHHHHHHHhcC
Confidence 57899999999999999986432 3568999987753 22111 11111 122444444433 2343433445668
Q ss_pred cceEEEeeCCCCCCChHHHHHH
Q psy979 94 TEAVLSIDDDITMLTPDELEFG 115 (176)
Q Consensus 94 T~AVlslDDDv~~l~~~eLeFa 115 (176)
++.|+.+|+|.. +.++-|+-.
T Consensus 79 ~~~i~~~D~D~~-~~~~~l~~~ 99 (180)
T cd06423 79 GDIVVVLDADTI-LEPDALKRL 99 (180)
T ss_pred CCEEEEECCCCC-cChHHHHHH
Confidence 999999999996 677766655
No 13
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=95.18 E-value=0.03 Score=44.42 Aligned_cols=97 Identities=11% Similarity=0.097 Sum_probs=58.9
Q ss_pred ceEEEEeccCCc-hHHHHHHHHHhcCCCcc---eEEEEecCCCCCCCCCCCCCCC--CCceEEEeCCCcccc---cccCC
Q psy979 18 RKYIPHDCIDRV-HSLFLLMEQLALVPSVS---KILVIWNNQAKSPPPVSKWPKI--SKSWTIIRTDENKLS---KRFYP 88 (176)
Q Consensus 18 r~~i~i~Ty~R~-~~L~~~l~~~~~~p~l~---~IvVvWn~~~~~pP~~~~~p~~--~vpV~v~~~~~nsLn---nRF~P 88 (176)
+.+|+|.+|++. +.|.+.|+++.+..+-. +|+|| .+.+ ........-.+ ..+++++....|... ++=.-
T Consensus 2 ~vsviip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivv-dd~s-~d~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~ 79 (234)
T cd06421 2 TVDVFIPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVL-DDGR-RPELRALAAELGVEYGYRYLTRPDNRHAKAGNLNNA 79 (234)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHhcCCCcccEEEEEE-cCCC-chhHHHHHHHhhcccCceEEEeCCCCCCcHHHHHHH
Confidence 689999999986 68999999998776665 77777 4432 22111000111 124555554443321 11111
Q ss_pred CCCCCcceEEEeeCCCCCCChHHHHHHhh
Q psy979 89 YAEIETEAVLSIDDDITMLTPDELEFGFE 117 (176)
Q Consensus 89 ~~~I~T~AVlslDDDv~~l~~~eLeFaF~ 117 (176)
......|-|+.+|+|.. +.++-|+-..+
T Consensus 80 ~~~a~~d~i~~lD~D~~-~~~~~l~~l~~ 107 (234)
T cd06421 80 LAHTTGDFVAILDADHV-PTPDFLRRTLG 107 (234)
T ss_pred HHhCCCCEEEEEccccC-cCccHHHHHHH
Confidence 23457899999999996 78776665554
No 14
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=94.90 E-value=0.033 Score=43.83 Aligned_cols=94 Identities=10% Similarity=0.080 Sum_probs=56.9
Q ss_pred EEEeccCCchHHHHHHHHHhcCCCc---ceEEEEecCCCCCCCCC-C-CCCCCCCceEEEeCCCcccccccC------CC
Q psy979 21 IPHDCIDRVHSLFLLMEQLALVPSV---SKILVIWNNQAKSPPPV-S-KWPKISKSWTIIRTDENKLSKRFY------PY 89 (176)
Q Consensus 21 i~i~Ty~R~~~L~~~l~~~~~~p~l---~~IvVvWn~~~~~pP~~-~-~~p~~~vpV~v~~~~~nsLnnRF~------P~ 89 (176)
|+|.||++.+.|.+.|+.+.+..+- -+|+||-++........ . ........++++..+. -.++.. -.
T Consensus 1 viip~~n~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~v~~~~~~~--~~~~g~~~a~n~g~ 78 (229)
T cd04192 1 VVIAARNEAENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILEFAAAKPNFQLKILNNSR--VSISGKKNALTTAI 78 (229)
T ss_pred CEEEecCcHHHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHHHHHhCCCcceEEeeccC--cccchhHHHHHHHH
Confidence 6899999999999999998544332 48999988742111110 0 0011123455555432 111111 11
Q ss_pred CCCCcceEEEeeCCCCCCChHHHHHHhh
Q psy979 90 AEIETEAVLSIDDDITMLTPDELEFGFE 117 (176)
Q Consensus 90 ~~I~T~AVlslDDDv~~l~~~eLeFaF~ 117 (176)
....+|-|+.+|+|.. +.++-|+-.-+
T Consensus 79 ~~~~~d~i~~~D~D~~-~~~~~l~~l~~ 105 (229)
T cd04192 79 KAAKGDWIVTTDADCV-VPSNWLLTFVA 105 (229)
T ss_pred HHhcCCEEEEECCCcc-cCHHHHHHHHH
Confidence 3457899999999996 78777766544
No 15
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=94.85 E-value=0.051 Score=42.51 Aligned_cols=93 Identities=18% Similarity=0.205 Sum_probs=56.2
Q ss_pred EEEeccCCchHHHHHHHHHhcCCC-cceEEEEecCCCCCCCCCCCC-CC--CCCceEEEeCCCcc-----cccccCCCCC
Q psy979 21 IPHDCIDRVHSLFLLMEQLALVPS-VSKILVIWNNQAKSPPPVSKW-PK--ISKSWTIIRTDENK-----LSKRFYPYAE 91 (176)
Q Consensus 21 i~i~Ty~R~~~L~~~l~~~~~~p~-l~~IvVvWn~~~~~pP~~~~~-p~--~~vpV~v~~~~~ns-----LnnRF~P~~~ 91 (176)
|+|.||++.+.|.+.|+.+.+... -.+| ||+.+.+.. ... .+ -+ -..+++++..+.|. +|.=+.--..
T Consensus 1 viI~~~n~~~~l~~~l~sl~~q~~~~~ei-iivD~~s~d-~t~-~~~~~~~~~~~i~~~~~~~n~g~~~~~n~~~~~a~~ 77 (202)
T cd04185 1 AVVVTYNRLDLLKECLDALLAQTRPPDHI-IVIDNASTD-GTA-EWLTSLGDLDNIVYLRLPENLGGAGGFYEGVRRAYE 77 (202)
T ss_pred CEEEeeCCHHHHHHHHHHHHhccCCCceE-EEEECCCCc-chH-HHHHHhcCCCceEEEECccccchhhHHHHHHHHHhc
Confidence 578899999999999999965433 3355 445554322 111 11 01 12347777766552 2211111114
Q ss_pred CCcceEEEeeCCCCCCChHHHHHHhh
Q psy979 92 IETEAVLSIDDDITMLTPDELEFGFE 117 (176)
Q Consensus 92 I~T~AVlslDDDv~~l~~~eLeFaF~ 117 (176)
...+.|+.+|||.. +.++-++-..+
T Consensus 78 ~~~d~v~~ld~D~~-~~~~~l~~l~~ 102 (202)
T cd04185 78 LGYDWIWLMDDDAI-PDPDALEKLLA 102 (202)
T ss_pred cCCCEEEEeCCCCC-cChHHHHHHHH
Confidence 56789999999996 78777766655
No 16
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=94.25 E-value=0.11 Score=40.97 Aligned_cols=94 Identities=17% Similarity=0.114 Sum_probs=58.5
Q ss_pred eEEEEeccCCchHHHHHHHHHhcCC-CcceEEEEecCCCCCCCCCCCCCCCCCceEEEeCCCcccccccCCCCCCCcceE
Q psy979 19 KYIPHDCIDRVHSLFLLMEQLALVP-SVSKILVIWNNQAKSPPPVSKWPKISKSWTIIRTDENKLSKRFYPYAEIETEAV 97 (176)
Q Consensus 19 ~~i~i~Ty~R~~~L~~~l~~~~~~p-~l~~IvVvWn~~~~~pP~~~~~p~~~vpV~v~~~~~nsLnnRF~P~~~I~T~AV 97 (176)
.+|+|.+|++.+.|.++|+.+.+.. .--+|+|| ++... ........ ...+.+...+.+.=.+|-.-.....++-|
T Consensus 1 vsvii~~~n~~~~l~~~l~sl~~q~~~~~evivv-dd~s~-d~~~~~~~--~~~~~~~~~~~g~~~a~n~g~~~a~~~~i 76 (221)
T cd02522 1 LSIIIPTLNEAENLPRLLASLRRLNPLPLEIIVV-DGGST-DGTVAIAR--SAGVVVISSPKGRARQMNAGAAAARGDWL 76 (221)
T ss_pred CEEEEEccCcHHHHHHHHHHHHhccCCCcEEEEE-eCCCC-ccHHHHHh--cCCeEEEeCCcCHHHHHHHHHHhccCCEE
Confidence 4799999999999999999886543 34577777 55432 22111111 13455554443322222223345679999
Q ss_pred EEeeCCCCCCChHHHHHHhh
Q psy979 98 LSIDDDITMLTPDELEFGFE 117 (176)
Q Consensus 98 lslDDDv~~l~~~eLeFaF~ 117 (176)
+.+|+|.. +.++-++-.+.
T Consensus 77 ~~~D~D~~-~~~~~l~~l~~ 95 (221)
T cd02522 77 LFLHADTR-LPPDWDAAIIE 95 (221)
T ss_pred EEEcCCCC-CChhHHHHHHH
Confidence 99999996 78877777544
No 17
>PRK11204 N-glycosyltransferase; Provisional
Probab=93.35 E-value=0.1 Score=46.27 Aligned_cols=100 Identities=16% Similarity=0.133 Sum_probs=62.4
Q ss_pred CCCceEEEEeccCCchHHHHHHHHHhcCCCc-ceEEEEecCCCCCCCCCCC---CCCCCCceEEEeCCCcc--cccccCC
Q psy979 15 STVRKYIPHDCIDRVHSLFLLMEQLALVPSV-SKILVIWNNQAKSPPPVSK---WPKISKSWTIIRTDENK--LSKRFYP 88 (176)
Q Consensus 15 ~~~r~~i~i~Ty~R~~~L~~~l~~~~~~p~l-~~IvVvWn~~~~~pP~~~~---~p~~~vpV~v~~~~~ns--LnnRF~P 88 (176)
..++++|+|.+|++.+.+.+.++++.+..+- -+|+|+-++.. +..... +..-...++++..+.|. -.++-.-
T Consensus 52 ~~p~vsViIp~yne~~~i~~~l~sl~~q~yp~~eiiVvdD~s~--d~t~~~l~~~~~~~~~v~~i~~~~n~Gka~aln~g 129 (420)
T PRK11204 52 EYPGVSILVPCYNEGENVEETISHLLALRYPNYEVIAINDGSS--DNTGEILDRLAAQIPRLRVIHLAENQGKANALNTG 129 (420)
T ss_pred CCCCEEEEEecCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCC--ccHHHHHHHHHHhCCcEEEEEcCCCCCHHHHHHHH
Confidence 3467999999999999999999998654333 47888876642 211110 11111237777644332 1122112
Q ss_pred CCCCCcceEEEeeCCCCCCChHHHHHHhh
Q psy979 89 YAEIETEAVLSIDDDITMLTPDELEFGFE 117 (176)
Q Consensus 89 ~~~I~T~AVlslDDDv~~l~~~eLeFaF~ 117 (176)
....++|-|+.+|+|.. +.++-|+..-+
T Consensus 130 ~~~a~~d~i~~lDaD~~-~~~d~L~~l~~ 157 (420)
T PRK11204 130 AAAARSEYLVCIDGDAL-LDPDAAAYMVE 157 (420)
T ss_pred HHHcCCCEEEEECCCCC-CChhHHHHHHH
Confidence 23467899999999996 78876665544
No 18
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=93.02 E-value=0.18 Score=41.05 Aligned_cols=93 Identities=15% Similarity=0.112 Sum_probs=58.7
Q ss_pred ceEEEEeccCCchHHHHHHHHHhcCCCcceEEEEecCCCCCCCCCCCCCCCCCceEEEeCCCccc-ccccCCCCCCCcce
Q psy979 18 RKYIPHDCIDRVHSLFLLMEQLALVPSVSKILVIWNNQAKSPPPVSKWPKISKSWTIIRTDENKL-SKRFYPYAEIETEA 96 (176)
Q Consensus 18 r~~i~i~Ty~R~~~L~~~l~~~~~~p~l~~IvVvWn~~~~~pP~~~~~p~~~vpV~v~~~~~nsL-nnRF~P~~~I~T~A 96 (176)
+++|+|.||+....|.+.|+++... ..+|+||=++. +. ....... ...++++....... ..|=.-.....++-
T Consensus 1 ~isvii~~~Ne~~~l~~~l~sl~~~--~~eiivvD~gS-tD-~t~~i~~--~~~~~v~~~~~~g~~~~~n~~~~~a~~d~ 74 (229)
T cd02511 1 TLSVVIITKNEERNIERCLESVKWA--VDEIIVVDSGS-TD-RTVEIAK--EYGAKVYQRWWDGFGAQRNFALELATNDW 74 (229)
T ss_pred CEEEEEEeCCcHHHHHHHHHHHhcc--cCEEEEEeCCC-Cc-cHHHHHH--HcCCEEEECCCCChHHHHHHHHHhCCCCE
Confidence 4789999999999999999999755 35899887763 21 1111011 12345554422111 22222334577899
Q ss_pred EEEeeCCCCCCChHHHHHHhh
Q psy979 97 VLSIDDDITMLTPDELEFGFE 117 (176)
Q Consensus 97 VlslDDDv~~l~~~eLeFaF~ 117 (176)
|+.+|.|-. ++++-++...+
T Consensus 75 vl~lDaD~~-~~~~~~~~l~~ 94 (229)
T cd02511 75 VLSLDADER-LTPELADEILA 94 (229)
T ss_pred EEEEeCCcC-cCHHHHHHHHH
Confidence 999999996 78776665444
No 19
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=92.92 E-value=0.078 Score=40.39 Aligned_cols=91 Identities=14% Similarity=0.077 Sum_probs=51.9
Q ss_pred EEEEeccCCchHHHHHHHHHhc--CCCcceEEEEecCCCCCCCCCCCC-CCCCC-ceEEEeCCCccc-ccccCCCCCCCc
Q psy979 20 YIPHDCIDRVHSLFLLMEQLAL--VPSVSKILVIWNNQAKSPPPVSKW-PKISK-SWTIIRTDENKL-SKRFYPYAEIET 94 (176)
Q Consensus 20 ~i~i~Ty~R~~~L~~~l~~~~~--~p~l~~IvVvWn~~~~~pP~~~~~-p~~~v-pV~v~~~~~nsL-nnRF~P~~~I~T 94 (176)
||+|.||++.+.|.+.|..+.+ .+. -+|+|| ++.+ .+..... ..... .+.++..+.... .+|=.-....+.
T Consensus 1 sivi~~~n~~~~l~~~l~sl~~q~~~~-~evivv-Dd~s--~d~~~~~~~~~~~~~~~~~~~~~~g~~~a~n~~~~~a~~ 76 (202)
T cd06433 1 SIITPTYNQAETLEETIDSVLSQTYPN-IEYIVI-DGGS--TDGTVDIIKKYEDKITYWISEPDKGIYDAMNKGIALATG 76 (202)
T ss_pred CEEEeccchHHHHHHHHHHHHhCCCCC-ceEEEE-eCCC--CccHHHHHHHhHhhcEEEEecCCcCHHHHHHHHHHHcCC
Confidence 5899999999999999999853 444 477777 4422 2211111 11111 133333222111 112112235578
Q ss_pred ceEEEeeCCCCCCChHHHHHH
Q psy979 95 EAVLSIDDDITMLTPDELEFG 115 (176)
Q Consensus 95 ~AVlslDDDv~~l~~~eLeFa 115 (176)
+-|+.+|+|.. +.++.+...
T Consensus 77 ~~v~~ld~D~~-~~~~~~~~~ 96 (202)
T cd06433 77 DIIGFLNSDDT-LLPGALLAV 96 (202)
T ss_pred CEEEEeCCCcc-cCchHHHHH
Confidence 99999999886 666666554
No 20
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=92.84 E-value=0.2 Score=42.35 Aligned_cols=95 Identities=11% Similarity=0.129 Sum_probs=60.5
Q ss_pred EEEEeccCCc-hHHHHHHHHHh-cCC-Cc-ceEEEEecCCCCCCCCCCCC-----CCCCCceEEEeCCCcc--cccccCC
Q psy979 20 YIPHDCIDRV-HSLFLLMEQLA-LVP-SV-SKILVIWNNQAKSPPPVSKW-----PKISKSWTIIRTDENK--LSKRFYP 88 (176)
Q Consensus 20 ~i~i~Ty~R~-~~L~~~l~~~~-~~p-~l-~~IvVvWn~~~~~pP~~~~~-----p~~~vpV~v~~~~~ns--LnnRF~P 88 (176)
||+|.||++. +.|.+.|+++. +.+ .. .+|+||=|+.. .+..... -.....|++++.+.|. -..|=.-
T Consensus 1 SIIIp~~N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~--d~t~~~~~~~~~~~~~~~v~vi~~~~n~G~~~a~N~g 78 (299)
T cd02510 1 SVIIIFHNEALSTLLRTVHSVINRTPPELLKEIILVDDFSD--KPELKLLLEEYYKKYLPKVKVLRLKKREGLIRARIAG 78 (299)
T ss_pred CEEEEEecCcHHHHHHHHHHHHhcCchhcCCEEEEEECCCC--chHHHHHHHHHHhhcCCcEEEEEcCCCCCHHHHHHHH
Confidence 5899999999 99999999985 333 22 48888876642 2221111 1123458888876653 1222222
Q ss_pred CCCCCcceEEEeeCCCCCCChHHHHHHhh
Q psy979 89 YAEIETEAVLSIDDDITMLTPDELEFGFE 117 (176)
Q Consensus 89 ~~~I~T~AVlslDDDv~~l~~~eLeFaF~ 117 (176)
...-+.+-|+.+|+|+. ++++-|+-..+
T Consensus 79 ~~~A~gd~i~fLD~D~~-~~~~wL~~ll~ 106 (299)
T cd02510 79 ARAATGDVLVFLDSHCE-VNVGWLEPLLA 106 (299)
T ss_pred HHHccCCEEEEEeCCcc-cCccHHHHHHH
Confidence 23457899999999997 77766655543
No 21
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=92.82 E-value=0.4 Score=38.21 Aligned_cols=90 Identities=22% Similarity=0.171 Sum_probs=58.0
Q ss_pred EEEeccCCc-hHHHHHHHHHhcCCCcceEEEEecCCCCCCCCCCCCCCC-CCceEEEeCCCcc-c---ccc-cCCCCCCC
Q psy979 21 IPHDCIDRV-HSLFLLMEQLALVPSVSKILVIWNNQAKSPPPVSKWPKI-SKSWTIIRTDENK-L---SKR-FYPYAEIE 93 (176)
Q Consensus 21 i~i~Ty~R~-~~L~~~l~~~~~~p~l~~IvVvWn~~~~~pP~~~~~p~~-~vpV~v~~~~~ns-L---nnR-F~P~~~I~ 93 (176)
++|.||++. +.|.++|+++.+- ..+|+||=|+. .+.....-.. ..++++++.+.|. . .|+ +.--.+..
T Consensus 1 ~vI~~yn~~~~~l~~~l~sl~~q--~~~iivvDn~s---~~~~~~~~~~~~~~i~~i~~~~n~G~~~a~N~g~~~a~~~~ 75 (237)
T cd02526 1 AVVVTYNPDLSKLKELLAALAEQ--VDKVVVVDNSS---GNDIELRLRLNSEKIELIHLGENLGIAKALNIGIKAALENG 75 (237)
T ss_pred CEEEEecCCHHHHHHHHHHHhcc--CCEEEEEeCCC---CccHHHHhhccCCcEEEEECCCceehHHhhhHHHHHHHhCC
Confidence 368899999 9999999998764 57888884442 1221112112 4567777766542 1 111 11111224
Q ss_pred cceEEEeeCCCCCCChHHHHHHh
Q psy979 94 TEAVLSIDDDITMLTPDELEFGF 116 (176)
Q Consensus 94 T~AVlslDDDv~~l~~~eLeFaF 116 (176)
++-|+.+|+|.. +.++.|+...
T Consensus 76 ~d~v~~lD~D~~-~~~~~l~~l~ 97 (237)
T cd02526 76 ADYVLLFDQDSV-PPPDMVEKLL 97 (237)
T ss_pred CCEEEEECCCCC-cCHhHHHHHH
Confidence 699999999997 7898898884
No 22
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=91.72 E-value=0.25 Score=44.18 Aligned_cols=92 Identities=17% Similarity=0.217 Sum_probs=54.2
Q ss_pred EEEEeccCCchHHHHHHHHHhcC-CC--cceEEEEecCCCCCCCCCCCCCCCCCceEEEeCCCccccc-----ccCCCC-
Q psy979 20 YIPHDCIDRVHSLFLLMEQLALV-PS--VSKILVIWNNQAKSPPPVSKWPKISKSWTIIRTDENKLSK-----RFYPYA- 90 (176)
Q Consensus 20 ~i~i~Ty~R~~~L~~~l~~~~~~-p~--l~~IvVvWn~~~~~pP~~~~~p~~~vpV~v~~~~~nsLnn-----RF~P~~- 90 (176)
-|++.+|+|++.|++.|+.+.+. |+ -.+|+|. .+.....+ ...--.....|+++.+...+..| .|..+.
T Consensus 3 PVlv~ayNRp~~l~r~LesLl~~~p~~~~~~liIs-~DG~~~~~-~~~v~~~~~~i~~i~~~~~~~~~~~~~~~~~~y~~ 80 (334)
T cd02514 3 PVLVIACNRPDYLRRMLDSLLSYRPSAEKFPIIVS-QDGGYEEV-ADVAKSFGDGVTHIQHPPISIKNVNPPHKFQGYYR 80 (334)
T ss_pred CEEEEecCCHHHHHHHHHHHHhccccCCCceEEEE-eCCCchHH-HHHHHhhccccEEEEcccccccccCcccccchhhH
Confidence 38999999999999999999765 23 3356666 33222211 11111122356666654333222 222222
Q ss_pred --------------CCCcceEEEeeCCCCCCChHHHHH
Q psy979 91 --------------EIETEAVLSIDDDITMLTPDELEF 114 (176)
Q Consensus 91 --------------~I~T~AVlslDDDv~~l~~~eLeF 114 (176)
....+.|..+|||.. ++++=++|
T Consensus 81 ia~hyk~aln~vF~~~~~~~vIILEDDl~-~sPdFf~y 117 (334)
T cd02514 81 IARHYKWALTQTFNLFGYSFVIILEDDLD-IAPDFFSY 117 (334)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEECCCCc-cCHhHHHH
Confidence 224689999999996 78774444
No 23
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=91.66 E-value=0.41 Score=36.45 Aligned_cols=94 Identities=13% Similarity=0.151 Sum_probs=52.9
Q ss_pred EEEeccCCchHHHHHHHHHhcCCCcceEEEEecCCCCCCCCCCC----CCC-CCCceEEEeCCCcccc---cccCCCCCC
Q psy979 21 IPHDCIDRVHSLFLLMEQLALVPSVSKILVIWNNQAKSPPPVSK----WPK-ISKSWTIIRTDENKLS---KRFYPYAEI 92 (176)
Q Consensus 21 i~i~Ty~R~~~L~~~l~~~~~~p~l~~IvVvWn~~~~~pP~~~~----~p~-~~vpV~v~~~~~nsLn---nRF~P~~~I 92 (176)
|+|.+|++...|.++|+.+.+.....-=+||+++.+ ...... +.. ...++..+....+... +|=.-...-
T Consensus 1 ivip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s--~d~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~g~~~a 78 (182)
T cd06420 1 LIITTYNRPEALELVLKSVLNQSILPFEVIIADDGS--TEETKELIEEFKSQFPIPIKHVWQEDEGFRKAKIRNKAIAAA 78 (182)
T ss_pred CEEeecCChHHHHHHHHHHHhccCCCCEEEEEeCCC--chhHHHHHHHHHhhcCCceEEEEcCCcchhHHHHHHHHHHHh
Confidence 689999999999999999975433333344556642 221101 111 1223333322221110 111112345
Q ss_pred CcceEEEeeCCCCCCChHHHHHHhh
Q psy979 93 ETEAVLSIDDDITMLTPDELEFGFE 117 (176)
Q Consensus 93 ~T~AVlslDDDv~~l~~~eLeFaF~ 117 (176)
+++-|+.+|+|.. ++++-|+...+
T Consensus 79 ~g~~i~~lD~D~~-~~~~~l~~~~~ 102 (182)
T cd06420 79 KGDYLIFIDGDCI-PHPDFIADHIE 102 (182)
T ss_pred cCCEEEEEcCCcc-cCHHHHHHHHH
Confidence 7899999999996 77776666555
No 24
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=91.29 E-value=0.91 Score=35.15 Aligned_cols=95 Identities=14% Similarity=0.082 Sum_probs=58.3
Q ss_pred EEEEeccCCchHHHHHHHHHhcCC-CcceEEEEecCCCCCCCCCC---CCC-CCCCceEEEeCCCcc--cccccCCCCCC
Q psy979 20 YIPHDCIDRVHSLFLLMEQLALVP-SVSKILVIWNNQAKSPPPVS---KWP-KISKSWTIIRTDENK--LSKRFYPYAEI 92 (176)
Q Consensus 20 ~i~i~Ty~R~~~L~~~l~~~~~~p-~l~~IvVvWn~~~~~pP~~~---~~p-~~~vpV~v~~~~~ns--LnnRF~P~~~I 92 (176)
+|+|.||+|.+.|.+.|+++.+.. .--+|+||=++ +. ..... .+. .....+.+...+.|. -.++-.-...-
T Consensus 1 sIvIp~yn~~~~l~~~l~sl~~q~~~~~eiiVvddg-S~-d~t~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~n~g~~~~ 78 (214)
T cd04196 1 AVLMATYNGEKYLREQLDSILAQTYKNDELIISDDG-ST-DGTVEIIKEYIDKDPFIIILIRNGKNLGVARNFESLLQAA 78 (214)
T ss_pred CEEEEecCcHHHHHHHHHHHHhCcCCCeEEEEEeCC-CC-CCcHHHHHHHHhcCCceEEEEeCCCCccHHHHHHHHHHhC
Confidence 589999999999999999985432 23478888333 22 11111 111 112356666655542 22222224567
Q ss_pred CcceEEEeeCCCCCCChHHHHHHhh
Q psy979 93 ETEAVLSIDDDITMLTPDELEFGFE 117 (176)
Q Consensus 93 ~T~AVlslDDDv~~l~~~eLeFaF~ 117 (176)
+++-|+.+|+|.. +.++.|+-..+
T Consensus 79 ~g~~v~~ld~Dd~-~~~~~l~~~~~ 102 (214)
T cd04196 79 DGDYVFFCDQDDI-WLPDKLERLLK 102 (214)
T ss_pred CCCEEEEECCCcc-cChhHHHHHHH
Confidence 8999999998875 67777766655
No 25
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=91.28 E-value=0.26 Score=38.86 Aligned_cols=94 Identities=14% Similarity=0.171 Sum_probs=57.2
Q ss_pred EEEeccCCchHHHHHHHHHhcCC--CcceEEEEecCCCCCCCCCC---CCCCCCCceEEEeCCCc-ccc-cccCCCCCCC
Q psy979 21 IPHDCIDRVHSLFLLMEQLALVP--SVSKILVIWNNQAKSPPPVS---KWPKISKSWTIIRTDEN-KLS-KRFYPYAEIE 93 (176)
Q Consensus 21 i~i~Ty~R~~~L~~~l~~~~~~p--~l~~IvVvWn~~~~~pP~~~---~~p~~~vpV~v~~~~~n-sLn-nRF~P~~~I~ 93 (176)
|+|.+|++...|.++|+.+.+.. .--+|+|| ++.++ ..... .+......++++..+.| ... .|=.-.....
T Consensus 1 ViIp~yn~~~~l~~~l~sl~~q~~~~~~eiiiV-Dd~S~-d~t~~~~~~~~~~~~~i~~~~~~~n~G~~~a~n~g~~~a~ 78 (224)
T cd06442 1 IIIPTYNERENIPELIERLDAALKGIDYEIIVV-DDNSP-DGTAEIVRELAKEYPRVRLIVRPGKRGLGSAYIEGFKAAR 78 (224)
T ss_pred CeEeccchhhhHHHHHHHHHHhhcCCCeEEEEE-eCCCC-CChHHHHHHHHHhCCceEEEecCCCCChHHHHHHHHHHcC
Confidence 57899999999999999986543 34577777 44322 21110 12211223566665544 221 1212234567
Q ss_pred cceEEEeeCCCCCCChHHHHHHhh
Q psy979 94 TEAVLSIDDDITMLTPDELEFGFE 117 (176)
Q Consensus 94 T~AVlslDDDv~~l~~~eLeFaF~ 117 (176)
+|.|+.+|+|.. +.++.|+...+
T Consensus 79 gd~i~~lD~D~~-~~~~~l~~l~~ 101 (224)
T cd06442 79 GDVIVVMDADLS-HPPEYIPELLE 101 (224)
T ss_pred CCEEEEEECCCC-CCHHHHHHHHH
Confidence 899999999986 78777766554
No 26
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=90.68 E-value=0.81 Score=40.46 Aligned_cols=97 Identities=12% Similarity=0.138 Sum_probs=60.3
Q ss_pred CCCceEEEEeccCCchHHHHHHHHHhcCCCc-ceEEEEecCCCCCCCCC-------CCCCCCCCceEEEeCCCc-----c
Q psy979 15 STVRKYIPHDCIDRVHSLFLLMEQLALVPSV-SKILVIWNNQAKSPPPV-------SKWPKISKSWTIIRTDEN-----K 81 (176)
Q Consensus 15 ~~~r~~i~i~Ty~R~~~L~~~l~~~~~~p~l-~~IvVvWn~~~~~pP~~-------~~~p~~~vpV~v~~~~~n-----s 81 (176)
+.+.+||+|.+|+..+.|.+.|+++.+..+= -+|+|+ ++ +...+.. ...| +..|+++..+.+ +
T Consensus 39 ~~p~VSViiP~~nee~~l~~~L~Sl~~q~Yp~~EIivv-dd-~s~D~t~~iv~~~~~~~p--~~~i~~v~~~~~~G~~~K 114 (373)
T TIGR03472 39 AWPPVSVLKPLHGDEPELYENLASFCRQDYPGFQMLFG-VQ-DPDDPALAVVRRLRADFP--DADIDLVIDARRHGPNRK 114 (373)
T ss_pred CCCCeEEEEECCCCChhHHHHHHHHHhcCCCCeEEEEE-eC-CCCCcHHHHHHHHHHhCC--CCceEEEECCCCCCCChH
Confidence 4567999999999999999999998654332 477665 22 2222211 1123 244666654332 1
Q ss_pred cccccCCCCCCCcceEEEeeCCCCCCChHHHHHHh
Q psy979 82 LSKRFYPYAEIETEAVLSIDDDITMLTPDELEFGF 116 (176)
Q Consensus 82 LnnRF~P~~~I~T~AVlslDDDv~~l~~~eLeFaF 116 (176)
.+|=..-.+.-++|-|+.+|+|+. ++++-|+..-
T Consensus 115 ~~~l~~~~~~a~ge~i~~~DaD~~-~~p~~L~~lv 148 (373)
T TIGR03472 115 VSNLINMLPHARHDILVIADSDIS-VGPDYLRQVV 148 (373)
T ss_pred HHHHHHHHHhccCCEEEEECCCCC-cChhHHHHHH
Confidence 122111235678999999999996 7887776553
No 27
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=90.65 E-value=0.3 Score=38.50 Aligned_cols=97 Identities=19% Similarity=0.207 Sum_probs=58.6
Q ss_pred CceEEEEeccCCchHHHHHHHHHhcC--CCcceEEEEecCCCCCCCCCC---CCC-CC-CCceEEEeCCCc-ccc----c
Q psy979 17 VRKYIPHDCIDRVHSLFLLMEQLALV--PSVSKILVIWNNQAKSPPPVS---KWP-KI-SKSWTIIRTDEN-KLS----K 84 (176)
Q Consensus 17 ~r~~i~i~Ty~R~~~L~~~l~~~~~~--p~l~~IvVvWn~~~~~pP~~~---~~p-~~-~vpV~v~~~~~n-sLn----n 84 (176)
+++||+|.+|+....|.+.|+++.+. |. -+|+||=++.. ..... .+. .. ...++++....+ ..+ +
T Consensus 1 p~vsviip~~n~~~~l~~~L~sl~~q~~~~-~eiivVdd~s~--d~t~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 77 (196)
T cd02520 1 PGVSILKPLCGVDPNLYENLESFFQQDYPK-YEILFCVQDED--DPAIPVVRKLIAKYPNVDARLLIGGEKVGINPKVNN 77 (196)
T ss_pred CCeEEEEecCCCCccHHHHHHHHHhccCCC-eEEEEEeCCCc--chHHHHHHHHHHHCCCCcEEEEecCCcCCCCHhHHH
Confidence 36899999999999999999998653 33 46666655532 11110 110 01 133556654443 221 1
Q ss_pred ccCCCCCCCcceEEEeeCCCCCCChHHHHHHhh
Q psy979 85 RFYPYAEIETEAVLSIDDDITMLTPDELEFGFE 117 (176)
Q Consensus 85 RF~P~~~I~T~AVlslDDDv~~l~~~eLeFaF~ 117 (176)
+=.-....++|.|+.+|+|.. ++++-|+..-+
T Consensus 78 ~n~g~~~a~~d~i~~~D~D~~-~~~~~l~~l~~ 109 (196)
T cd02520 78 LIKGYEEARYDILVISDSDIS-VPPDYLRRMVA 109 (196)
T ss_pred HHHHHHhCCCCEEEEECCCce-EChhHHHHHHH
Confidence 111223467899999999996 78877766555
No 28
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=90.05 E-value=0.3 Score=34.56 Aligned_cols=92 Identities=17% Similarity=0.111 Sum_probs=53.8
Q ss_pred EEEeccCCchHHHHHHHHHhcCCC-cceEEEEecCCCCCCCCCCCCCCC---CCceEEEeCCCc--ccccccCCCCCCCc
Q psy979 21 IPHDCIDRVHSLFLLMEQLALVPS-VSKILVIWNNQAKSPPPVSKWPKI---SKSWTIIRTDEN--KLSKRFYPYAEIET 94 (176)
Q Consensus 21 i~i~Ty~R~~~L~~~l~~~~~~p~-l~~IvVvWn~~~~~pP~~~~~p~~---~vpV~v~~~~~n--sLnnRF~P~~~I~T 94 (176)
|++.+|++...|..+++++.+... ..+|+|+ .+.. ........... ..++.......+ .-.++-.-.....+
T Consensus 1 iii~~~~~~~~l~~~l~s~~~~~~~~~~i~i~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 78 (156)
T cd00761 1 VIIPAYNEEPYLERCLESLLAQTYPNFEVIVV-DDGS-TDGTLEILEEYAKKDPRVIRVINEENQGLAAARNAGLKAARG 78 (156)
T ss_pred CEEeecCcHHHHHHHHHHHHhCCccceEEEEE-eCCC-CccHHHHHHHHHhcCCCeEEEEecCCCChHHHHHHHHHHhcC
Confidence 578999999999999999987764 3455554 4432 22211111111 123333333322 22333333344589
Q ss_pred ceEEEeeCCCCCCChHHHHHH
Q psy979 95 EAVLSIDDDITMLTPDELEFG 115 (176)
Q Consensus 95 ~AVlslDDDv~~l~~~eLeFa 115 (176)
+-|+.+|+|.. +.++.++..
T Consensus 79 d~v~~~d~D~~-~~~~~~~~~ 98 (156)
T cd00761 79 EYILFLDADDL-LLPDWLERL 98 (156)
T ss_pred CEEEEECCCCc-cCccHHHHH
Confidence 99999999996 677766654
No 29
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=89.47 E-value=0.76 Score=41.73 Aligned_cols=101 Identities=14% Similarity=0.067 Sum_probs=59.3
Q ss_pred cCCCceEEEEeccCCchHHHHHHHHHhcCCCcc---eEEEEecCCCCCCCCC--CCCCCCCCceEEEeCCCcc--ccccc
Q psy979 14 GSTVRKYIPHDCIDRVHSLFLLMEQLALVPSVS---KILVIWNNQAKSPPPV--SKWPKISKSWTIIRTDENK--LSKRF 86 (176)
Q Consensus 14 ~~~~r~~i~i~Ty~R~~~L~~~l~~~~~~p~l~---~IvVvWn~~~~~pP~~--~~~p~~~vpV~v~~~~~ns--LnnRF 86 (176)
+..++++|+|.+|+..+.|.+.|+++.+..+-. +|+|| ++.++..-.. ..+......+.++..++|. -.++-
T Consensus 46 ~~~P~vsVIIP~yNe~~~l~~~l~sl~~q~yp~~~~eIiVV-Dd~StD~T~~il~~~~~~~~~v~v~~~~~~~Gka~AlN 124 (439)
T TIGR03111 46 GKLPDITIIIPVYNSEDTLFNCIESIYNQTYPIELIDIILA-NNQSTDDSFQVFCRAQNEFPGLSLRYMNSDQGKAKALN 124 (439)
T ss_pred CCCCCEEEEEEeCCChHHHHHHHHHHHhcCCCCCCeEEEEE-ECCCChhHHHHHHHHHHhCCCeEEEEeCCCCCHHHHHH
Confidence 556889999999999999999999996554322 68888 4433211100 0011111134444322221 11111
Q ss_pred CCCCCCCcceEEEeeCCCCCCChHHHHHHh
Q psy979 87 YPYAEIETEAVLSIDDDITMLTPDELEFGF 116 (176)
Q Consensus 87 ~P~~~I~T~AVlslDDDv~~l~~~eLeFaF 116 (176)
.-....+++-|+.+|.|.. ++++-|+-.-
T Consensus 125 ~gl~~s~g~~v~~~DaD~~-~~~d~L~~l~ 153 (439)
T TIGR03111 125 AAIYNSIGKYIIHIDSDGK-LHKDAIKNMV 153 (439)
T ss_pred HHHHHccCCEEEEECCCCC-cChHHHHHHH
Confidence 1123466889999999996 7887766543
No 30
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=88.86 E-value=0.89 Score=36.31 Aligned_cols=96 Identities=18% Similarity=0.216 Sum_probs=56.0
Q ss_pred EEEEeccCCc-hHHHHHHHHHhcCCC-cceEEEEecCCCCCCCCC---CCC-CCCCCceEEEeCCCcc---cccccCCCC
Q psy979 20 YIPHDCIDRV-HSLFLLMEQLALVPS-VSKILVIWNNQAKSPPPV---SKW-PKISKSWTIIRTDENK---LSKRFYPYA 90 (176)
Q Consensus 20 ~i~i~Ty~R~-~~L~~~l~~~~~~p~-l~~IvVvWn~~~~~pP~~---~~~-p~~~vpV~v~~~~~ns---LnnRF~P~~ 90 (176)
+|+|.+|+.. +.|.+.++++.+..+ --+|+||=|+. ...... ..+ ......++++....|. -.++-.-..
T Consensus 1 siiip~~ne~~~~l~~~l~sl~~q~~~~~eiiVvdd~s-~D~t~~~~i~~~~~~~~~~i~~i~~~~~~G~~~~a~n~g~~ 79 (236)
T cd06435 1 SIHVPCYEEPPEMVKETLDSLAALDYPNFEVIVIDNNT-KDEALWKPVEAHCAQLGERFRFFHVEPLPGAKAGALNYALE 79 (236)
T ss_pred CeeEeeCCCcHHHHHHHHHHHHhCCCCCcEEEEEeCCC-CchhHHHHHHHHHHHhCCcEEEEEcCCCCCCchHHHHHHHH
Confidence 5899999986 799999999976543 24788885442 222110 011 0112345555543321 111111111
Q ss_pred CC--CcceEEEeeCCCCCCChHHHHHHhh
Q psy979 91 EI--ETEAVLSIDDDITMLTPDELEFGFE 117 (176)
Q Consensus 91 ~I--~T~AVlslDDDv~~l~~~eLeFaF~ 117 (176)
.. .+|.|+.+|+|.. ++++.|+..-.
T Consensus 80 ~a~~~~d~i~~lD~D~~-~~~~~l~~l~~ 107 (236)
T cd06435 80 RTAPDAEIIAVIDADYQ-VEPDWLKRLVP 107 (236)
T ss_pred hcCCCCCEEEEEcCCCC-cCHHHHHHHHH
Confidence 22 2689999999996 88888776655
No 31
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=88.53 E-value=0.55 Score=36.42 Aligned_cols=95 Identities=9% Similarity=0.068 Sum_probs=59.3
Q ss_pred EEEEeccCCc--hHHHHHHHHHhcCCC-cceEEEEecCCCCCCCCCCCC-CC--CCCceEEEeCCCcc--cccccCCCCC
Q psy979 20 YIPHDCIDRV--HSLFLLMEQLALVPS-VSKILVIWNNQAKSPPPVSKW-PK--ISKSWTIIRTDENK--LSKRFYPYAE 91 (176)
Q Consensus 20 ~i~i~Ty~R~--~~L~~~l~~~~~~p~-l~~IvVvWn~~~~~pP~~~~~-p~--~~vpV~v~~~~~ns--LnnRF~P~~~ 91 (176)
||+|.||++. +.|.+.|+++.+..+ -.+|+||=++.. ......+ .. -..+++++..+.|. -.+|-.-...
T Consensus 1 sviip~~n~~~~~~l~~~l~Sl~~q~~~~~eiiivdd~ss--~d~t~~~~~~~~~~~~i~~i~~~~n~G~~~a~N~g~~~ 78 (201)
T cd04195 1 SVLMSVYIKEKPEFLREALESILKQTLPPDEVVLVKDGPV--TQSLNEVLEEFKRKLPLKVVPLEKNRGLGKALNEGLKH 78 (201)
T ss_pred CEEEEccccchHHHHHHHHHHHHhcCCCCcEEEEEECCCC--chhHHHHHHHHHhcCCeEEEEcCccccHHHHHHHHHHh
Confidence 5899999876 589999999864332 357777655531 1111111 00 12358777766553 2334333445
Q ss_pred CCcceEEEeeCCCCCCChHHHHHHhh
Q psy979 92 IETEAVLSIDDDITMLTPDELEFGFE 117 (176)
Q Consensus 92 I~T~AVlslDDDv~~l~~~eLeFaF~ 117 (176)
-.++-|+.+|+|.. +.++-|+-..+
T Consensus 79 a~gd~i~~lD~Dd~-~~~~~l~~~~~ 103 (201)
T cd04195 79 CTYDWVARMDTDDI-SLPDRFEKQLD 103 (201)
T ss_pred cCCCEEEEeCCccc-cCcHHHHHHHH
Confidence 67899999999885 78877777555
No 32
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=88.44 E-value=0.4 Score=36.48 Aligned_cols=94 Identities=15% Similarity=0.158 Sum_probs=60.0
Q ss_pred EEEeccCCchHHHHHHHHHhcCC---CcceEEEEecCCCCCCCCCC---CCCCCCCceEEEeCCCcc--cccccCCCCCC
Q psy979 21 IPHDCIDRVHSLFLLMEQLALVP---SVSKILVIWNNQAKSPPPVS---KWPKISKSWTIIRTDENK--LSKRFYPYAEI 92 (176)
Q Consensus 21 i~i~Ty~R~~~L~~~l~~~~~~p---~l~~IvVvWn~~~~~pP~~~---~~p~~~vpV~v~~~~~ns--LnnRF~P~~~I 92 (176)
|+|.+|++.+.|.++|.++.+.. ..-+|+|+=|+.. ..... .+..-...++++..+.|. -.++=.-...-
T Consensus 1 iii~~~n~~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~--d~~~~~~~~~~~~~~~~~~~~~~~n~G~~~a~n~g~~~a 78 (185)
T cd04179 1 VVIPAYNEEENIPELVERLLAVLEEGYDYEIIVVDDGST--DGTAEIARELAARVPRVRVIRLSRNFGKGAAVRAGFKAA 78 (185)
T ss_pred CeecccChHhhHHHHHHHHHHHhccCCCEEEEEEcCCCC--CChHHHHHHHHHhCCCeEEEEccCCCCccHHHHHHHHHh
Confidence 57899999999999999997664 3678888866632 22111 011111223556555442 22222233456
Q ss_pred CcceEEEeeCCCCCCChHHHHHHhh
Q psy979 93 ETEAVLSIDDDITMLTPDELEFGFE 117 (176)
Q Consensus 93 ~T~AVlslDDDv~~l~~~eLeFaF~ 117 (176)
.+|-|+.+|+|.. +.++-|+-..+
T Consensus 79 ~gd~i~~lD~D~~-~~~~~l~~l~~ 102 (185)
T cd04179 79 RGDIVVTMDADLQ-HPPEDIPKLLE 102 (185)
T ss_pred cCCEEEEEeCCCC-CCHHHHHHHHH
Confidence 6799999999996 78887877666
No 33
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=88.42 E-value=0.84 Score=38.05 Aligned_cols=89 Identities=17% Similarity=0.196 Sum_probs=50.9
Q ss_pred ccCC-chHHHHHHHHHhcCCCcceEEEEecCCCCCCCCCCCCCCCCCceEEEeCCCcc-cccccCC-CC---CCCcceEE
Q psy979 25 CIDR-VHSLFLLMEQLALVPSVSKILVIWNNQAKSPPPVSKWPKISKSWTIIRTDENK-LSKRFYP-YA---EIETEAVL 98 (176)
Q Consensus 25 Ty~R-~~~L~~~l~~~~~~p~l~~IvVvWn~~~~~pP~~~~~p~~~vpV~v~~~~~ns-LnnRF~P-~~---~I~T~AVl 98 (176)
||+| .+.|.+.|+.+.+- ..+|+||=|+. ...-....+-.....|+++..+.|. +..=+.- .. +-.+|.|+
T Consensus 2 tyn~~~~~l~~~l~sl~~q--~~~iiVVDN~S-~~~~~~~~~~~~~~~i~~i~~~~N~G~a~a~N~Gi~~a~~~~~d~i~ 78 (281)
T TIGR01556 2 TFNPDLEHLGELITSLPKQ--VDRIIAVDNSP-HSDQPLKNARLRGQKIALIHLGDNQGIAGAQNQGLDASFRRGVQGVL 78 (281)
T ss_pred ccCccHHHHHHHHHHHHhc--CCEEEEEECcC-CCcHhHHHHhccCCCeEEEECCCCcchHHHHHHHHHHHHHCCCCEEE
Confidence 8998 58999999998754 34655554442 2110111111112348888876652 1111110 00 12679999
Q ss_pred EeeCCCCCCChHHHHHHhh
Q psy979 99 SIDDDITMLTPDELEFGFE 117 (176)
Q Consensus 99 slDDDv~~l~~~eLeFaF~ 117 (176)
.+|||.. +..+-|+...+
T Consensus 79 ~lD~D~~-~~~~~l~~l~~ 96 (281)
T TIGR01556 79 LLDQDSR-PGNAFLAAQWK 96 (281)
T ss_pred EECCCCC-CCHHHHHHHHH
Confidence 9999996 77777765554
No 34
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=87.59 E-value=1 Score=32.10 Aligned_cols=95 Identities=13% Similarity=0.014 Sum_probs=51.8
Q ss_pred CCceEEEEeccCCchHHHHHHHHHhcCCCcc-eEEEEecCCCCCCCCCCCCCCCCC---ceEEEeCCCcc--cccccCCC
Q psy979 16 TVRKYIPHDCIDRVHSLFLLMEQLALVPSVS-KILVIWNNQAKSPPPVSKWPKISK---SWTIIRTDENK--LSKRFYPY 89 (176)
Q Consensus 16 ~~r~~i~i~Ty~R~~~L~~~l~~~~~~p~l~-~IvVvWn~~~~~pP~~~~~p~~~v---pV~v~~~~~ns--LnnRF~P~ 89 (176)
..+.+|+|.||++...|.+.|+++.+-..-. +|+||=++ ++..- ....-.... .+.......|. -.+|=.-.
T Consensus 2 ~~~~siiip~~n~~~~l~~~l~s~~~q~~~~~eiivvddg-s~d~t-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 79 (291)
T COG0463 2 MPKVSVVIPTYNEEEYLPEALESLLNQTYKDFEIIVVDDG-STDGT-TEIAIEYGAKDVRVIRLINERNGGLGAARNAGL 79 (291)
T ss_pred CccEEEEEeccchhhhHHHHHHHHHhhhhcceEEEEEeCC-CCCCh-HHHHHHHhhhcceEEEeecccCCChHHHHHhhH
Confidence 3578999999999999999999996554443 66666444 22221 111111111 23333323331 12222222
Q ss_pred CCCCcceEEEeeCCCCCCChHHHHH
Q psy979 90 AEIETEAVLSIDDDITMLTPDELEF 114 (176)
Q Consensus 90 ~~I~T~AVlslDDDv~~l~~~eLeF 114 (176)
.....+.|+.+|.|.. . ++.+..
T Consensus 80 ~~~~~~~~~~~d~d~~-~-~~~~~~ 102 (291)
T COG0463 80 EYARGDYIVFLDADDQ-H-PPELIP 102 (291)
T ss_pred HhccCCEEEEEccCCC-C-CHHHHH
Confidence 2334488999999885 3 344443
No 35
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=87.53 E-value=1.1 Score=39.74 Aligned_cols=100 Identities=11% Similarity=0.027 Sum_probs=59.8
Q ss_pred CCCceEEEEeccCCchHHHHHHHHHhcC--CCcceEEEEecCCCCCCCCCC---CCC-CC--CCceEEEeCCCccccc--
Q psy979 15 STVRKYIPHDCIDRVHSLFLLMEQLALV--PSVSKILVIWNNQAKSPPPVS---KWP-KI--SKSWTIIRTDENKLSK-- 84 (176)
Q Consensus 15 ~~~r~~i~i~Ty~R~~~L~~~l~~~~~~--p~l~~IvVvWn~~~~~pP~~~---~~p-~~--~vpV~v~~~~~nsLnn-- 84 (176)
..++++|+|.+|+..+.|.+.|+++.+. |.--+|+||=++ ++. .... .+. .. ...++++..+.+.-+.
T Consensus 38 ~~p~VSVIIpa~Ne~~~L~~~L~sL~~q~yp~~~eIIVVDd~-StD-~T~~i~~~~~~~~~~~~~i~vi~~~~~~~g~~G 115 (384)
T TIGR03469 38 AWPAVVAVVPARNEADVIGECVTSLLEQDYPGKLHVILVDDH-STD-GTADIARAAARAYGRGDRLTVVSGQPLPPGWSG 115 (384)
T ss_pred CCCCEEEEEecCCcHhHHHHHHHHHHhCCCCCceEEEEEeCC-CCC-cHHHHHHHHHHhcCCCCcEEEecCCCCCCCCcc
Confidence 3567999999999999999999999643 333488888443 222 1110 011 01 1146666532211100
Q ss_pred ----ccCCCCCCC-----cceEEEeeCCCCCCChHHHHHHhh
Q psy979 85 ----RFYPYAEIE-----TEAVLSIDDDITMLTPDELEFGFE 117 (176)
Q Consensus 85 ----RF~P~~~I~-----T~AVlslDDDv~~l~~~eLeFaF~ 117 (176)
.-.-...-+ .|-|+.+|+|+. +.++.|+..-+
T Consensus 116 k~~A~n~g~~~A~~~~~~gd~llflDaD~~-~~p~~l~~lv~ 156 (384)
T TIGR03469 116 KLWAVSQGIAAARTLAPPADYLLLTDADIA-HGPDNLARLVA 156 (384)
T ss_pred hHHHHHHHHHHHhccCCCCCEEEEECCCCC-CChhHHHHHHH
Confidence 000112233 799999999997 78887776654
No 36
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=86.95 E-value=1.4 Score=35.03 Aligned_cols=92 Identities=14% Similarity=0.194 Sum_probs=52.5
Q ss_pred EEEeccCCchHHHHHHHHHhcC--CCcceEEEEecCCCCCCCCCC----CCC-CC-CCceEEEeCCCc-----cc-cccc
Q psy979 21 IPHDCIDRVHSLFLLMEQLALV--PSVSKILVIWNNQAKSPPPVS----KWP-KI-SKSWTIIRTDEN-----KL-SKRF 86 (176)
Q Consensus 21 i~i~Ty~R~~~L~~~l~~~~~~--p~l~~IvVvWn~~~~~pP~~~----~~p-~~-~vpV~v~~~~~n-----sL-nnRF 86 (176)
|+|.+|++.+.|.+.|.++.+. +.--+|+|| ++.+ ..... .|- .. ..+++++....+ .+ ..|-
T Consensus 1 ViIp~yn~~~~l~~~l~sl~~q~~~~~~eiiVv-Dd~S--~d~t~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~a~N 77 (219)
T cd06913 1 IILPVHNGEQWLDECLESVLQQDFEGTLELSVF-NDAS--TDKSAEIIEKWRKKLEDSGVIVLVGSHNSPSPKGVGYAKN 77 (219)
T ss_pred CEEeecCcHHHHHHHHHHHHhCCCCCCEEEEEE-eCCC--CccHHHHHHHHHHhCcccCeEEEEecccCCCCccHHHHHH
Confidence 6899999999999999998543 322477777 4422 21110 110 11 234555543221 11 1111
Q ss_pred CCCCCCCcceEEEeeCCCCCCChHHHHHHh
Q psy979 87 YPYAEIETEAVLSIDDDITMLTPDELEFGF 116 (176)
Q Consensus 87 ~P~~~I~T~AVlslDDDv~~l~~~eLeFaF 116 (176)
.-...-..+-|+.+|+|.. +.++.|+-.+
T Consensus 78 ~g~~~a~gd~i~~lD~D~~-~~~~~l~~~~ 106 (219)
T cd06913 78 QAIAQSSGRYLCFLDSDDV-MMPQRIRLQY 106 (219)
T ss_pred HHHHhcCCCEEEEECCCcc-CChhHHHHHH
Confidence 1223457899999999986 6777665433
No 37
>PRK10073 putative glycosyl transferase; Provisional
Probab=86.57 E-value=1.6 Score=38.11 Aligned_cols=98 Identities=15% Similarity=0.091 Sum_probs=60.6
Q ss_pred CCceEEEEeccCCchHHHHHHHHHhcCCCc-ceEEEEecCCCCCCCCC---CCCCCCCCceEEEeCCCccc-ccccCCCC
Q psy979 16 TVRKYIPHDCIDRVHSLFLLMEQLALVPSV-SKILVIWNNQAKSPPPV---SKWPKISKSWTIIRTDENKL-SKRFYPYA 90 (176)
Q Consensus 16 ~~r~~i~i~Ty~R~~~L~~~l~~~~~~p~l-~~IvVvWn~~~~~pP~~---~~~p~~~vpV~v~~~~~nsL-nnRF~P~~ 90 (176)
.+.++|+|.+|++.+.|.+.|.++.+-..- -+|+|| ++.++ .... ..|..-...|+++.+++..+ ..|=.-..
T Consensus 5 ~p~vSVIIP~yN~~~~L~~~l~Sl~~Qt~~~~EIIiV-dDgSt-D~t~~i~~~~~~~~~~i~vi~~~n~G~~~arN~gl~ 82 (328)
T PRK10073 5 TPKLSIIIPLYNAGKDFRAFMESLIAQTWTALEIIIV-NDGST-DNSVEIAKHYAENYPHVRLLHQANAGVSVARNTGLA 82 (328)
T ss_pred CCeEEEEEeccCCHHHHHHHHHHHHhCCCCCeEEEEE-eCCCC-ccHHHHHHHHHhhCCCEEEEECCCCChHHHHHHHHH
Confidence 468999999999999999999998544332 366666 44321 1111 11222223477776542222 22333345
Q ss_pred CCCcceEEEeeCCCCCCChHHHHHHh
Q psy979 91 EIETEAVLSIDDDITMLTPDELEFGF 116 (176)
Q Consensus 91 ~I~T~AVlslDDDv~~l~~~eLeFaF 116 (176)
..+++-|+.+|.|-. +.++-++-..
T Consensus 83 ~a~g~yi~flD~DD~-~~p~~l~~l~ 107 (328)
T PRK10073 83 VATGKYVAFPDADDV-VYPTMYETLM 107 (328)
T ss_pred hCCCCEEEEECCCCc-cChhHHHHHH
Confidence 678999999999886 6777665443
No 38
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=86.19 E-value=2 Score=36.72 Aligned_cols=99 Identities=22% Similarity=0.148 Sum_probs=62.1
Q ss_pred CCceEEEEeccCCchHHHHHHHHHhcCCCcceEEEEecCCCCCCCCCCCCCCC--CCceEEEeCCCcc----cccccCCC
Q psy979 16 TVRKYIPHDCIDRVHSLFLLMEQLALVPSVSKILVIWNNQAKSPPPVSKWPKI--SKSWTIIRTDENK----LSKRFYPY 89 (176)
Q Consensus 16 ~~r~~i~i~Ty~R~~~L~~~l~~~~~~p~l~~IvVvWn~~~~~pP~~~~~p~~--~vpV~v~~~~~ns----LnnRF~P~ 89 (176)
..+.+++|.||+|.+.|.+.+..+.+.....+.+|+=.|. +.+....+-.. ..-|+++....|- =+|+-.-.
T Consensus 2 ~~~i~~iiv~yn~~~~l~~~l~~l~~~~~~~~~iv~vDn~--s~d~~~~~~~~~~~~~v~~i~~~~NlG~agg~n~g~~~ 79 (305)
T COG1216 2 MPKISIIIVTYNRGEDLVECLASLAAQTYPDDVIVVVDNG--STDGSLEALKARFFPNVRLIENGENLGFAGGFNRGIKY 79 (305)
T ss_pred CcceEEEEEecCCHHHHHHHHHHHhcCCCCCcEEEEccCC--CCCCCHHHHHhhcCCcEEEEEcCCCccchhhhhHHHHH
Confidence 3578999999999999999999998777766666622222 22222222121 2458888877762 23321111
Q ss_pred CCCCcc-eEEEeeCCCCCCChHHHHHHhh
Q psy979 90 AEIETE-AVLSIDDDITMLTPDELEFGFE 117 (176)
Q Consensus 90 ~~I~T~-AVlslDDDv~~l~~~eLeFaF~ 117 (176)
..=+.+ .|+.+++|+. +.++-|+--.+
T Consensus 80 a~~~~~~~~l~LN~D~~-~~~~~l~~ll~ 107 (305)
T COG1216 80 ALAKGDDYVLLLNPDTV-VEPDLLEELLK 107 (305)
T ss_pred HhcCCCcEEEEEcCCee-eChhHHHHHHH
Confidence 101112 7999999986 78887776666
No 39
>PRK10018 putative glycosyl transferase; Provisional
Probab=86.17 E-value=1.2 Score=38.33 Aligned_cols=99 Identities=15% Similarity=0.061 Sum_probs=63.0
Q ss_pred CCceEEEEeccCCchHHHHHHHHHhcCCC-cceEEEEecCCCCCCCCC-CCCC-C-CCCceEEEeCCCccc--ccccCCC
Q psy979 16 TVRKYIPHDCIDRVHSLFLLMEQLALVPS-VSKILVIWNNQAKSPPPV-SKWP-K-ISKSWTIIRTDENKL--SKRFYPY 89 (176)
Q Consensus 16 ~~r~~i~i~Ty~R~~~L~~~l~~~~~~p~-l~~IvVvWn~~~~~pP~~-~~~p-~-~~vpV~v~~~~~nsL--nnRF~P~ 89 (176)
.+.++|+|.||++.+.|.+.|+++.+-.+ --+|+||=++. . .... ..+. . ....|+++..+.|.- .+|-.-.
T Consensus 4 ~p~VSVIip~yN~~~~l~~~l~Svl~Qt~~~~EiIVVDDgS-~-~~~~~~~~~~~~~~~ri~~i~~~~n~G~~~a~N~gi 81 (279)
T PRK10018 4 NPLISIYMPTWNRQQLAIRAIKSVLRQDYSNWEMIIVDDCS-T-SWEQLQQYVTALNDPRITYIHNDINSGACAVRNQAI 81 (279)
T ss_pred CCEEEEEEEeCCCHHHHHHHHHHHHhCCCCCeEEEEEECCC-C-CHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHH
Confidence 46799999999999999999988743222 24777774432 2 1100 1111 1 124688888766541 3333444
Q ss_pred CCCCcceEEEeeCCCCCCChHHHHHHhh
Q psy979 90 AEIETEAVLSIDDDITMLTPDELEFGFE 117 (176)
Q Consensus 90 ~~I~T~AVlslDDDv~~l~~~eLeFaF~ 117 (176)
..-+.+-|+.+|+|-. ..++.|+...+
T Consensus 82 ~~a~g~~I~~lDaDD~-~~p~~l~~~~~ 108 (279)
T PRK10018 82 MLAQGEYITGIDDDDE-WTPNRLSVFLA 108 (279)
T ss_pred HHcCCCEEEEECCCCC-CCccHHHHHHH
Confidence 5678999999999886 67777765443
No 40
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=83.92 E-value=1.1 Score=34.32 Aligned_cols=95 Identities=16% Similarity=0.142 Sum_probs=57.6
Q ss_pred EEEeccCCchHHHHHHHHHhcC----CCcceEEEEecCCCCCCCCC---CCCCCCCCceEEEeCCCcc--cccccCCCCC
Q psy979 21 IPHDCIDRVHSLFLLMEQLALV----PSVSKILVIWNNQAKSPPPV---SKWPKISKSWTIIRTDENK--LSKRFYPYAE 91 (176)
Q Consensus 21 i~i~Ty~R~~~L~~~l~~~~~~----p~l~~IvVvWn~~~~~pP~~---~~~p~~~vpV~v~~~~~ns--LnnRF~P~~~ 91 (176)
|+|.||++...|.++++.+.+. ..--+|+||=++. . .... ..+..-...++++...+|. -+.+-.-...
T Consensus 1 viIp~~n~~~~l~~~l~sl~~~~~~~~~~~eiivvdd~s-~-d~t~~~~~~~~~~~~~i~~i~~~~n~G~~~a~n~g~~~ 78 (181)
T cd04187 1 IVVPVYNEEENLPELYERLKAVLESLGYDYEIIFVDDGS-T-DRTLEILRELAARDPRVKVIRLSRNFGQQAALLAGLDH 78 (181)
T ss_pred CEEeecCchhhHHHHHHHHHHHHHhcCCCeEEEEEeCCC-C-ccHHHHHHHHHhhCCCEEEEEecCCCCcHHHHHHHHHh
Confidence 5899999999998888877432 2334788884432 1 1111 1111111237777655542 1222112235
Q ss_pred CCcceEEEeeCCCCCCChHHHHHHhhh
Q psy979 92 IETEAVLSIDDDITMLTPDELEFGFEY 118 (176)
Q Consensus 92 I~T~AVlslDDDv~~l~~~eLeFaF~~ 118 (176)
...+.|+.+|+|.. ++++.|+...+.
T Consensus 79 a~~d~i~~~D~D~~-~~~~~l~~l~~~ 104 (181)
T cd04187 79 ARGDAVITMDADLQ-DPPELIPEMLAK 104 (181)
T ss_pred cCCCEEEEEeCCCC-CCHHHHHHHHHH
Confidence 67799999999997 788888887774
No 41
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=82.27 E-value=2.6 Score=34.21 Aligned_cols=97 Identities=13% Similarity=0.082 Sum_probs=56.7
Q ss_pred ceEEEEeccCCchHHHHHHHHHhcCCCc---ceEEEEecCCCCCCCCCC---CCCC-CCCceEEEeCCCc--ccccccCC
Q psy979 18 RKYIPHDCIDRVHSLFLLMEQLALVPSV---SKILVIWNNQAKSPPPVS---KWPK-ISKSWTIIRTDEN--KLSKRFYP 88 (176)
Q Consensus 18 r~~i~i~Ty~R~~~L~~~l~~~~~~p~l---~~IvVvWn~~~~~pP~~~---~~p~-~~vpV~v~~~~~n--sLnnRF~P 88 (176)
.++|+|.+|+....|.++|+++.+..+- -+|+||=++. . .-... .+.. ....|.+.....| .-..+=.-
T Consensus 2 ~vsIiIp~~Ne~~~l~~~l~sl~~~~y~~~~~eiivVdd~s-~-d~t~~i~~~~~~~~~~~i~~~~~~~~~G~~~a~n~g 79 (241)
T cd06427 2 VYTILVPLYKEAEVLPQLIASLSALDYPRSKLDVKLLLEED-D-EETIAAARALRLPSIFRVVVVPPSQPRTKPKACNYA 79 (241)
T ss_pred eEEEEEecCCcHHHHHHHHHHHHhCcCCcccEEEEEEECCC-C-chHHHHHHHhccCCCeeEEEecCCCCCchHHHHHHH
Confidence 6899999999999999999999765432 3676663332 1 11110 1111 1123443332222 01111112
Q ss_pred CCCCCcceEEEeeCCCCCCChHHHHHHhh
Q psy979 89 YAEIETEAVLSIDDDITMLTPDELEFGFE 117 (176)
Q Consensus 89 ~~~I~T~AVlslDDDv~~l~~~eLeFaF~ 117 (176)
....+.|-|+.+|+|.. +.++.|+-..+
T Consensus 80 ~~~a~gd~i~~~DaD~~-~~~~~l~~~~~ 107 (241)
T cd06427 80 LAFARGEYVVIYDAEDA-PDPDQLKKAVA 107 (241)
T ss_pred HHhcCCCEEEEEcCCCC-CChHHHHHHHH
Confidence 23567899999999996 78887766655
No 42
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=81.65 E-value=2.9 Score=36.58 Aligned_cols=100 Identities=13% Similarity=0.139 Sum_probs=60.6
Q ss_pred CCceEEEEeccCCchHHHHHHHHHh----cCCCcceEEEEecCCCCCCCCCCC---CC-CCCCceEEEeCCCccc--ccc
Q psy979 16 TVRKYIPHDCIDRVHSLFLLMEQLA----LVPSVSKILVIWNNQAKSPPPVSK---WP-KISKSWTIIRTDENKL--SKR 85 (176)
Q Consensus 16 ~~r~~i~i~Ty~R~~~L~~~l~~~~----~~p~l~~IvVvWn~~~~~pP~~~~---~p-~~~vpV~v~~~~~nsL--nnR 85 (176)
..+++|+|.+|+..+.|.++++.+. +.+.--+|+|| ++.++. ..... +. ..+..++.+..++|.= +.+
T Consensus 5 ~~~vSVVIP~yNE~~~i~~~l~~l~~~~~~~~~~~EIIvV-DDgS~D-~T~~il~~~~~~~~~~v~~i~~~~n~G~~~A~ 82 (325)
T PRK10714 5 IKKVSVVIPVYNEQESLPELIRRTTAACESLGKEYEILLI-DDGSSD-NSAEMLVEAAQAPDSHIVAILLNRNYGQHSAI 82 (325)
T ss_pred CCeEEEEEcccCchhhHHHHHHHHHHHHHhCCCCEEEEEE-eCCCCC-cHHHHHHHHHhhcCCcEEEEEeCCCCCHHHHH
Confidence 3568999999999888888887763 33334588888 332221 11100 11 1134455554444421 222
Q ss_pred cCCCCCCCcceEEEeeCCCCCCChHHHHHHhhh
Q psy979 86 FYPYAEIETEAVLSIDDDITMLTPDELEFGFEY 118 (176)
Q Consensus 86 F~P~~~I~T~AVlslDDDv~~l~~~eLeFaF~~ 118 (176)
..-...-+.|.|+.+|.|.. .+++++.-..+.
T Consensus 83 ~~G~~~A~gd~vv~~DaD~q-~~p~~i~~l~~~ 114 (325)
T PRK10714 83 MAGFSHVTGDLIITLDADLQ-NPPEEIPRLVAK 114 (325)
T ss_pred HHHHHhCCCCEEEEECCCCC-CCHHHHHHHHHH
Confidence 22223457899999999996 788888877773
No 43
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=77.79 E-value=4.9 Score=32.72 Aligned_cols=97 Identities=11% Similarity=0.086 Sum_probs=58.6
Q ss_pred cCCCceEEEEeccCCchHHHHHHHHHhc-CCC--cceEEEEecCCCCCCCCCCCC----C-CC-CCceEEEeCCCcc---
Q psy979 14 GSTVRKYIPHDCIDRVHSLFLLMEQLAL-VPS--VSKILVIWNNQAKSPPPVSKW----P-KI-SKSWTIIRTDENK--- 81 (176)
Q Consensus 14 ~~~~r~~i~i~Ty~R~~~L~~~l~~~~~-~p~--l~~IvVvWn~~~~~pP~~~~~----p-~~-~vpV~v~~~~~ns--- 81 (176)
.+..+++|+|.+|+....|..+++.+.+ ... --+|+||=++ +......+ . .. ...|.++..+.|.
T Consensus 6 ~~~~~vsVvIp~yne~~~l~~~l~~l~~~~~~~~~~eiivvDdg---S~D~t~~i~~~~~~~~~~~~v~~~~~~~n~G~~ 82 (243)
T PLN02726 6 EGAMKYSIIVPTYNERLNIALIVYLIFKALQDVKDFEIIVVDDG---SPDGTQDVVKQLQKVYGEDRILLRPRPGKLGLG 82 (243)
T ss_pred CCCceEEEEEccCCchhhHHHHHHHHHHHhccCCCeEEEEEeCC---CCCCHHHHHHHHHHhcCCCcEEEEecCCCCCHH
Confidence 3456899999999999888887776643 222 2377777332 11111111 1 01 1235555544431
Q ss_pred --cccccCCCCCCCcceEEEeeCCCCCCChHHHHHHhh
Q psy979 82 --LSKRFYPYAEIETEAVLSIDDDITMLTPDELEFGFE 117 (176)
Q Consensus 82 --LnnRF~P~~~I~T~AVlslDDDv~~l~~~eLeFaF~ 117 (176)
+|.=+ ...+++.|+.+|.|.. ++++.|+..++
T Consensus 83 ~a~n~g~---~~a~g~~i~~lD~D~~-~~~~~l~~l~~ 116 (243)
T PLN02726 83 TAYIHGL---KHASGDFVVIMDADLS-HHPKYLPSFIK 116 (243)
T ss_pred HHHHHHH---HHcCCCEEEEEcCCCC-CCHHHHHHHHH
Confidence 22212 2457899999999996 79888888776
No 44
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=76.16 E-value=3.4 Score=31.92 Aligned_cols=94 Identities=16% Similarity=0.086 Sum_probs=51.5
Q ss_pred EEEeccCCchHHHHHHHHHhcCCC---cceEEEEecCCCCCCCCCCCCCCCCCceEEEeCCCcc-----cccccCCCC--
Q psy979 21 IPHDCIDRVHSLFLLMEQLALVPS---VSKILVIWNNQAKSPPPVSKWPKISKSWTIIRTDENK-----LSKRFYPYA-- 90 (176)
Q Consensus 21 i~i~Ty~R~~~L~~~l~~~~~~p~---l~~IvVvWn~~~~~pP~~~~~p~~~vpV~v~~~~~ns-----LnnRF~P~~-- 90 (176)
|+|.+|+..+.|.++|+++.+..+ .-+|+||=++ +. ......-......+.++....|. +|.=+.-..
T Consensus 1 VvIp~~ne~~~i~~~l~sl~~~~~p~~~~eiivvdd~-s~-D~t~~~~~~~~~~~~~~~~~~~~gk~~aln~g~~~a~~~ 78 (183)
T cd06438 1 ILIPAHNEEAVIGNTVRSLKAQDYPRELYRIFVVADN-CT-DDTAQVARAAGATVLERHDPERRGKGYALDFGFRHLLNL 78 (183)
T ss_pred CEEeccchHHHHHHHHHHHHhcCCCCcccEEEEEeCC-CC-chHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHhc
Confidence 688999999999999999965432 3477777333 22 11111001122333332222211 111011100
Q ss_pred CCCcceEEEeeCCCCCCChHHHHHHhh
Q psy979 91 EIETEAVLSIDDDITMLTPDELEFGFE 117 (176)
Q Consensus 91 ~I~T~AVlslDDDv~~l~~~eLeFaF~ 117 (176)
.-+.+.|+.+|.|.. +.++.|....+
T Consensus 79 ~~~~d~v~~~DaD~~-~~p~~l~~l~~ 104 (183)
T cd06438 79 ADDPDAVVVFDADNL-VDPNALEELNA 104 (183)
T ss_pred CCCCCEEEEEcCCCC-CChhHHHHHHH
Confidence 124788999999996 78877765554
No 45
>PRK10063 putative glycosyl transferase; Provisional
Probab=75.89 E-value=7.5 Score=32.48 Aligned_cols=86 Identities=9% Similarity=0.053 Sum_probs=49.5
Q ss_pred ceEEEEeccCCchHHHHHHHHHhc---CCCc-ceEEEEecCCCCCCCCC--CCCCCCCCceEEEeCCCcccc-cccCCCC
Q psy979 18 RKYIPHDCIDRVHSLFLLMEQLAL---VPSV-SKILVIWNNQAKSPPPV--SKWPKISKSWTIIRTDENKLS-KRFYPYA 90 (176)
Q Consensus 18 r~~i~i~Ty~R~~~L~~~l~~~~~---~p~l-~~IvVvWn~~~~~pP~~--~~~p~~~vpV~v~~~~~nsLn-nRF~P~~ 90 (176)
+++|+|.||+..+.|.++|+.+.+ .++. -+|+|| ++.++.--.. ..+.. ..+++++..+.+... .+=.-..
T Consensus 2 ~vSVIi~~yN~~~~l~~~l~sl~~~~~~~~~~~EiIVv-DdgStD~t~~i~~~~~~-~~~i~~i~~~~~G~~~A~N~Gi~ 79 (248)
T PRK10063 2 LLSVITVAFRNLEGIVKTHASLRHLAQDPGISFEWIVV-DGGSNDGTREFLENLNG-IFNLRFVSEPDNGIYDAMNKGIA 79 (248)
T ss_pred eEEEEEEeCCCHHHHHHHHHHHHHHHhCCCCCEEEEEE-ECcCcccHHHHHHHhcc-cCCEEEEECCCCCHHHHHHHHHH
Confidence 689999999999999999999853 2222 366666 4432211000 11211 135777765543221 1111122
Q ss_pred CCCcceEEEee-CCCC
Q psy979 91 EIETEAVLSID-DDIT 105 (176)
Q Consensus 91 ~I~T~AVlslD-DDv~ 105 (176)
.-+++-|+.+| ||+.
T Consensus 80 ~a~g~~v~~ld~DD~~ 95 (248)
T PRK10063 80 MAQGRFALFLNSGDIF 95 (248)
T ss_pred HcCCCEEEEEeCCccc
Confidence 45689999999 7775
No 46
>PF05060 MGAT2: N-acetylglucosaminyltransferase II (MGAT2); InterPro: IPR007754 N-acetylglucosaminyltransferase II (2.4.1.143 from EC) is a Golgi resident enzyme that catalyzes an essential step in the biosynthetic pathway leading from high mannose to complex N-linked oligosaccharides []. Mutations in the MGAT2 gene lead to a congenital disorder of glycosylation (CDG IIa). CDG IIa patients have an increased bleeding tendency, unrelated to coagulation factors []. Synonym(s): UDP-N-acetyl-D-glucosamine:alpha-6-D-mannoside beta-1,2-N- acetylglucosaminyltransferase II, GnT II/MGAT2.; GO: 0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0005795 Golgi stack, 0016021 integral to membrane
Probab=67.79 E-value=8.2 Score=35.09 Aligned_cols=41 Identities=20% Similarity=0.287 Sum_probs=37.8
Q ss_pred CCCceEEEEeccCCchHHHHHHHHHhcCCCcceEEEEecCC
Q psy979 15 STVRKYIPHDCIDRVHSLFLLMEQLALVPSVSKILVIWNNQ 55 (176)
Q Consensus 15 ~~~r~~i~i~Ty~R~~~L~~~l~~~~~~p~l~~IvVvWn~~ 55 (176)
+.+...|+|+-++|++-|+.+|..|++..++++.++|-+..
T Consensus 29 ~~~~~vivvqVH~r~~yl~~li~sL~~~~~I~~~llifSHd 69 (356)
T PF05060_consen 29 ANDSIVIVVQVHNRPEYLKLLIDSLSQARGIEEALLIFSHD 69 (356)
T ss_pred CCCCEEEEEEECCcHHHHHHHHHHHHHhhCccceEEEEecc
Confidence 46789999999999999999999999999999999988775
No 47
>KOG2791|consensus
Probab=66.29 E-value=9.8 Score=34.96 Aligned_cols=43 Identities=23% Similarity=0.284 Sum_probs=39.4
Q ss_pred hcCCCceEEEEeccCCchHHHHHHHHHhcCCCcceEEEEecCC
Q psy979 13 AGSTVRKYIPHDCIDRVHSLFLLMEQLALVPSVSKILVIWNNQ 55 (176)
Q Consensus 13 ~~~~~r~~i~i~Ty~R~~~L~~~l~~~~~~p~l~~IvVvWn~~ 55 (176)
.=|++|..++++-.+|+.-|+-+|+++++.+++.+.+++-+..
T Consensus 113 dla~~~~vlV~qVHnRp~Ylr~lveSlrk~kGI~~tLlifSHD 155 (455)
T KOG2791|consen 113 DLAKDRVVLVLQVHNRPQYLRVLVESLRKVKGISETLLIFSHD 155 (455)
T ss_pred ccccceEEEEEEEcCcHHHHHHHHHHHHhccCccceEEEEecc
Confidence 3478999999999999999999999999999999999988764
No 48
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=64.78 E-value=13 Score=33.67 Aligned_cols=97 Identities=12% Similarity=0.074 Sum_probs=57.6
Q ss_pred CCceEEEEeccCCchHHHHHHHHHhcC--CCcceEEEEecCCCCCCCCCC---CCCCCCCceEEEeCCCcc--cccccCC
Q psy979 16 TVRKYIPHDCIDRVHSLFLLMEQLALV--PSVSKILVIWNNQAKSPPPVS---KWPKISKSWTIIRTDENK--LSKRFYP 88 (176)
Q Consensus 16 ~~r~~i~i~Ty~R~~~L~~~l~~~~~~--p~l~~IvVvWn~~~~~pP~~~---~~p~~~vpV~v~~~~~ns--LnnRF~P 88 (176)
.++.+|+|.+|+....+.++++++.+. |. -+|+||=++. ...... .+..-...++++..+.|. -.++=.-
T Consensus 74 ~p~vsViIP~yNE~~~i~~~l~sll~q~yp~-~eIivVdDgs--~D~t~~~~~~~~~~~~~v~vv~~~~n~Gka~AlN~g 150 (444)
T PRK14583 74 HPLVSILVPCFNEGLNARETIHAALAQTYTN-IEVIAINDGS--SDDTAQVLDALLAEDPRLRVIHLAHNQGKAIALRMG 150 (444)
T ss_pred CCcEEEEEEeCCCHHHHHHHHHHHHcCCCCC-eEEEEEECCC--CccHHHHHHHHHHhCCCEEEEEeCCCCCHHHHHHHH
Confidence 357999999999999999999998654 43 3677773332 222111 111111236666533321 0111000
Q ss_pred CCCCCcceEEEeeCCCCCCChHHHHHHh
Q psy979 89 YAEIETEAVLSIDDDITMLTPDELEFGF 116 (176)
Q Consensus 89 ~~~I~T~AVlslDDDv~~l~~~eLeFaF 116 (176)
...-+.|-|+.+|.|.. ++++.|+..-
T Consensus 151 l~~a~~d~iv~lDAD~~-~~~d~L~~lv 177 (444)
T PRK14583 151 AAAARSEYLVCIDGDAL-LDKNAVPYLV 177 (444)
T ss_pred HHhCCCCEEEEECCCCC-cCHHHHHHHH
Confidence 12356899999999996 7888776553
No 49
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=64.71 E-value=24 Score=30.94 Aligned_cols=102 Identities=12% Similarity=0.052 Sum_probs=60.9
Q ss_pred hcCCCceEEEEeccCCchHHHHHHHHHhcC---------CCcceEEEEecCCCCCCCCC---CCCCC----CCCceEEEe
Q psy979 13 AGSTVRKYIPHDCIDRVHSLFLLMEQLALV---------PSVSKILVIWNNQAKSPPPV---SKWPK----ISKSWTIIR 76 (176)
Q Consensus 13 ~~~~~r~~i~i~Ty~R~~~L~~~l~~~~~~---------p~l~~IvVvWn~~~~~pP~~---~~~p~----~~vpV~v~~ 76 (176)
-.+...++|+|.+|+..+.|.++++.+.++ ..--+|+||=++ ++. -.. ..+.. ....++++.
T Consensus 66 ~~~~~~isVVIP~yNe~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDg-StD-~T~~i~~~~~~~~~~~~~~i~vi~ 143 (333)
T PTZ00260 66 KDSDVDLSIVIPAYNEEDRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDG-SKD-KTLKVAKDFWRQNINPNIDIRLLS 143 (333)
T ss_pred CCCCeEEEEEEeeCCCHHHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCC-CCC-chHHHHHHHHHhcCCCCCcEEEEE
Confidence 456778999999999988888888776431 224588888333 211 100 01110 113478887
Q ss_pred CCCcc--cccccCCCCCCCcceEEEeeCCCCCCChHHHHHHhh
Q psy979 77 TDENK--LSKRFYPYAEIETEAVLSIDDDITMLTPDELEFGFE 117 (176)
Q Consensus 77 ~~~ns--LnnRF~P~~~I~T~AVlslDDDv~~l~~~eLeFaF~ 117 (176)
.++|. -..+-.-...-+.+-|+.+|.|.. .++++++...+
T Consensus 144 ~~~N~G~~~A~~~Gi~~a~gd~I~~~DaD~~-~~~~~l~~l~~ 185 (333)
T PTZ00260 144 LLRNKGKGGAVRIGMLASRGKYILMVDADGA-TDIDDFDKLED 185 (333)
T ss_pred cCCCCChHHHHHHHHHHccCCEEEEEeCCCC-CCHHHHHHHHH
Confidence 66552 111111112345789999999986 68888766655
No 50
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=60.75 E-value=20 Score=28.09 Aligned_cols=94 Identities=15% Similarity=0.074 Sum_probs=57.0
Q ss_pred EEEeccCCchHHHHHHHHHhcC-----CCcceEEEEecCCCCCCCCC---CCCCC-CCCceEEEeCCCcc-c-ccccCCC
Q psy979 21 IPHDCIDRVHSLFLLMEQLALV-----PSVSKILVIWNNQAKSPPPV---SKWPK-ISKSWTIIRTDENK-L-SKRFYPY 89 (176)
Q Consensus 21 i~i~Ty~R~~~L~~~l~~~~~~-----p~l~~IvVvWn~~~~~pP~~---~~~p~-~~vpV~v~~~~~ns-L-nnRF~P~ 89 (176)
|+|.+|+..+.|.+.|+.+.+. +.-.+|+||=++. . .-.. ..+.. .+..++++..+.|. . ..+-.-.
T Consensus 1 iiip~yN~~~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S-~-D~t~~~~~~~~~~~~~~i~~i~~~~n~G~~~a~~~g~ 78 (211)
T cd04188 1 VVIPAYNEEKRLPPTLEEAVEYLEERPSFSYEIIVVDDGS-K-DGTAEVARKLARKNPALIRVLTLPKNRGKGGAVRAGM 78 (211)
T ss_pred CEEcccChHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCC-C-CchHHHHHHHHHhCCCcEEEEEcccCCCcHHHHHHHH
Confidence 5789999999888888887542 2456888884332 1 1110 01111 12235777765442 1 1111223
Q ss_pred CCCCcceEEEeeCCCCCCChHHHHHHhh
Q psy979 90 AEIETEAVLSIDDDITMLTPDELEFGFE 117 (176)
Q Consensus 90 ~~I~T~AVlslDDDv~~l~~~eLeFaF~ 117 (176)
.....+-|+.+|.|.. ++++.++-..+
T Consensus 79 ~~a~gd~i~~ld~D~~-~~~~~l~~l~~ 105 (211)
T cd04188 79 LAARGDYILFADADLA-TPFEELEKLEE 105 (211)
T ss_pred HHhcCCEEEEEeCCCC-CCHHHHHHHHH
Confidence 3556799999999986 78888877766
No 51
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=60.56 E-value=16 Score=35.55 Aligned_cols=101 Identities=11% Similarity=0.032 Sum_probs=58.5
Q ss_pred CCCceEEEEeccCCch-HHHHHHHHHhcCCCc---ceEEEEecCCCCC-----CCCC--------CCCCCC--CCceEEE
Q psy979 15 STVRKYIPHDCIDRVH-SLFLLMEQLALVPSV---SKILVIWNNQAKS-----PPPV--------SKWPKI--SKSWTII 75 (176)
Q Consensus 15 ~~~r~~i~i~Ty~R~~-~L~~~l~~~~~~p~l---~~IvVvWn~~~~~-----pP~~--------~~~p~~--~vpV~v~ 75 (176)
..++++|+|.||+... .+.++++...+..+- -+|+|+ ++.++. |+.. ..+..+ ..+++++
T Consensus 129 ~~P~VsViIP~yNE~~~iv~~tl~s~~~~dYP~~~~eIiVv-DDgStD~t~~~~~~~~~~~~~~~~~~~~l~~~~~v~yi 207 (713)
T TIGR03030 129 EWPTVDVFIPTYNEDLEIVATTVLAAKNMDYPADKFRVWIL-DDGGTDQKRNDPDPEQAEAAQRREELKEFCRKLGVNYI 207 (713)
T ss_pred cCCeeEEEEcCCCCCHHHHHHHHHHHHhCCCCccceEEEEE-ECcCCccccccchhhhhhhhhhHHHHHHHHHHcCcEEE
Confidence 3468999999999875 567788888766554 367777 332211 1100 001001 2357766
Q ss_pred eCCCcc---cccccCCCCCCCcceEEEeeCCCCCCChHHHHHHhh
Q psy979 76 RTDENK---LSKRFYPYAEIETEAVLSIDDDITMLTPDELEFGFE 117 (176)
Q Consensus 76 ~~~~ns---LnnRF~P~~~I~T~AVlslDDDv~~l~~~eLeFaF~ 117 (176)
..++|. -.|.=.-....+.|-|+.+|.|.. +.++-|+.+-.
T Consensus 208 ~r~~n~~~KAgnLN~al~~a~gd~Il~lDAD~v-~~pd~L~~~v~ 251 (713)
T TIGR03030 208 TRPRNVHAKAGNINNALKHTDGELILIFDADHV-PTRDFLQRTVG 251 (713)
T ss_pred ECCCCCCCChHHHHHHHHhcCCCEEEEECCCCC-cChhHHHHHHH
Confidence 544431 111111123456899999999996 78877766543
No 52
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=58.34 E-value=17 Score=31.67 Aligned_cols=100 Identities=11% Similarity=0.114 Sum_probs=54.8
Q ss_pred CCCceEEEEeccCCchHHHHHHHHHhcC---CCcceEEEEecCCCCCCCCCCCCCCCCCce----EEEe-CCCc--cccc
Q psy979 15 STVRKYIPHDCIDRVHSLFLLMEQLALV---PSVSKILVIWNNQAKSPPPVSKWPKISKSW----TIIR-TDEN--KLSK 84 (176)
Q Consensus 15 ~~~r~~i~i~Ty~R~~~L~~~l~~~~~~---p~l~~IvVvWn~~~~~pP~~~~~p~~~vpV----~v~~-~~~n--sLnn 84 (176)
...+++|+|.+|+..+.|.+.|+.+.+. +...+|+||=++. +.-- ....-.....+ .++. ...| .-.+
T Consensus 29 ~~~~vSVVIPayNee~~I~~~l~sl~~~~~~~~~~EIIVVDDgS-tD~T-~~ia~~~~~~v~~~~~~~~~~~~n~Gkg~A 106 (306)
T PRK13915 29 AGRTVSVVLPALNEEETVGKVVDSIRPLLMEPLVDELIVIDSGS-TDAT-AERAAAAGARVVSREEILPELPPRPGKGEA 106 (306)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHHHHHHhccCCCcEEEEEeCCC-ccHH-HHHHHHhcchhhcchhhhhccccCCCHHHH
Confidence 4678999999999999999999988642 3456888875543 1110 00000011110 1110 0111 1111
Q ss_pred ccCCCCCCCcceEEEeeCCCCCCChHHHHHHh
Q psy979 85 RFYPYAEIETEAVLSIDDDITMLTPDELEFGF 116 (176)
Q Consensus 85 RF~P~~~I~T~AVlslDDDv~~l~~~eLeFaF 116 (176)
...-...-+.|.|+.+|.|...++++.|+-..
T Consensus 107 ~~~g~~~a~gd~vv~lDaD~~~~~p~~l~~l~ 138 (306)
T PRK13915 107 LWRSLAATTGDIVVFVDADLINFDPMFVPGLL 138 (306)
T ss_pred HHHHHHhcCCCEEEEEeCccccCCHHHHHHHH
Confidence 11112234679999999998425676665443
No 53
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=54.19 E-value=33 Score=22.57 Aligned_cols=34 Identities=21% Similarity=0.193 Sum_probs=26.9
Q ss_pred ceEEEEeccCCchHHHHHHHHHhcCCCcceEEEE
Q psy979 18 RKYIPHDCIDRVHSLFLLMEQLALVPSVSKILVI 51 (176)
Q Consensus 18 r~~i~i~Ty~R~~~L~~~l~~~~~~p~l~~IvVv 51 (176)
+..+.+.+-++...|.++++.+.+.|.|.+|.++
T Consensus 42 ~i~~~v~v~~~~~~l~~l~~~L~~i~~V~~v~~~ 75 (76)
T cd04888 42 NVTISIDTSTMNGDIDELLEELREIDGVEKVELV 75 (76)
T ss_pred EEEEEEEcCchHHHHHHHHHHHhcCCCeEEEEEe
Confidence 3445555555656999999999999999999775
No 54
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=49.36 E-value=20 Score=30.34 Aligned_cols=94 Identities=17% Similarity=0.079 Sum_probs=52.6
Q ss_pred EEEEeccCCch------HHHHHHHHHhc--CCCcceEEEEecCCCCCCCCC----CCCCCCCCceEEEeCC-Cccc----
Q psy979 20 YIPHDCIDRVH------SLFLLMEQLAL--VPSVSKILVIWNNQAKSPPPV----SKWPKISKSWTIIRTD-ENKL---- 82 (176)
Q Consensus 20 ~i~i~Ty~R~~------~L~~~l~~~~~--~p~l~~IvVvWn~~~~~pP~~----~~~p~~~vpV~v~~~~-~nsL---- 82 (176)
||+|..+.|.. .|+..+..+.. .+.--+|+||-++.. .... ........ +.++..+ .+..
T Consensus 1 SiIIPv~~~~~~~~i~~~l~~~l~~l~~~~~~~~~eiIvvd~~s~--~~~~~~l~~~~~~~~~-~~~i~~~~~~~~f~~a 77 (281)
T PF10111_consen 1 SIIIPVRNRSERPDILERLRNCLESLSQFQSDPDFEIIVVDDGSS--DEFDEELKKLCEKNGF-IRYIRHEDNGEPFSRA 77 (281)
T ss_pred CEEEEecCCccchHHHHHHHHHHHHHHhcCCCCCEEEEEEECCCc--hhHHHHHHHHHhccCc-eEEEEcCCCCCCcCHH
Confidence 57888887663 44444777754 355668999998852 2110 01111111 2233322 1100
Q ss_pred ccccCCCCCCCcceEEEeeCCCCCCChHHHHHHhh
Q psy979 83 SKRFYPYAEIETEAVLSIDDDITMLTPDELEFGFE 117 (176)
Q Consensus 83 nnRF~P~~~I~T~AVlslDDDv~~l~~~eLeFaF~ 117 (176)
..|=.-...-+++-|+.+|-|+. ++++-|+-+.+
T Consensus 78 ~arN~g~~~A~~d~l~flD~D~i-~~~~~i~~~~~ 111 (281)
T PF10111_consen 78 KARNIGAKYARGDYLIFLDADCI-PSPDFIEKLLN 111 (281)
T ss_pred HHHHHHHHHcCCCEEEEEcCCee-eCHHHHHHHHH
Confidence 11111112458999999999996 88888877766
No 55
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=40.22 E-value=1e+02 Score=26.04 Aligned_cols=93 Identities=11% Similarity=0.118 Sum_probs=57.0
Q ss_pred eEEEEeccCCchH-HHHHHHHHhc----CC--CcceEEEEecCCCCCCCCC------------CCCCCCCCceEEEeCCC
Q psy979 19 KYIPHDCIDRVHS-LFLLMEQLAL----VP--SVSKILVIWNNQAKSPPPV------------SKWPKISKSWTIIRTDE 79 (176)
Q Consensus 19 ~~i~i~Ty~R~~~-L~~~l~~~~~----~p--~l~~IvVvWn~~~~~pP~~------------~~~p~~~vpV~v~~~~~ 79 (176)
.+|++.+|.=+.. |...|+..++ .. .--+|+|+ .+.+ -|.. ..+|. ..-|+++..++
T Consensus 1 ~SIliP~~ne~~~~l~~~l~~~~~~~~~~~~~~~~eI~vl-dD~~--d~~~~~~~~~~~~~l~~~~~~-~~~v~~~~r~~ 76 (254)
T cd04191 1 TAIVMPVYNEDPARVFAGLRAMYESLAKTGLADHFDFFIL-SDTR--DPDIWLAEEAAWLDLCEELGA-QGRIYYRRRRE 76 (254)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHHHHhcCCcCceEEEEE-CCCC--ChHHHHHHHHHHHHHHHHhCC-CCcEEEEEcCC
Confidence 3799999986665 7777766543 21 23688777 5542 2321 11333 44566666554
Q ss_pred cc------cccccCCCCCCCcceEEEeeCCCCCCChHHHHHHhh
Q psy979 80 NK------LSKRFYPYAEIETEAVLSIDDDITMLTPDELEFGFE 117 (176)
Q Consensus 80 ns------LnnRF~P~~~I~T~AVlslDDDv~~l~~~eLeFaF~ 117 (176)
|. ||+ |+....-+.+-|+.+|-|.. +.++-|.....
T Consensus 77 ~~g~Kag~l~~-~~~~~~~~~~~i~~~DaD~~-~~p~~l~~~v~ 118 (254)
T cd04191 77 NTGRKAGNIAD-FCRRWGSRYDYMVVLDADSL-MSGDTIVRLVR 118 (254)
T ss_pred CCCccHHHHHH-HHHHhCCCCCEEEEEeCCCC-CCHHHHHHHHH
Confidence 42 232 43322246689999999997 78888887766
No 56
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=40.21 E-value=39 Score=26.36 Aligned_cols=93 Identities=16% Similarity=0.200 Sum_probs=52.3
Q ss_pred EEEeccCCchHHHHHHHHHhcCCCcceEEEEecCCCCCCCCCCCCCC---CCCceEEEeCC---Cc-----ccccccCCC
Q psy979 21 IPHDCIDRVHSLFLLMEQLALVPSVSKILVIWNNQAKSPPPVSKWPK---ISKSWTIIRTD---EN-----KLSKRFYPY 89 (176)
Q Consensus 21 i~i~Ty~R~~~L~~~l~~~~~~p~l~~IvVvWn~~~~~pP~~~~~p~---~~vpV~v~~~~---~n-----sLnnRF~P~ 89 (176)
|+|.+|+..+.|.++|+++.+...--+|+|| ++.+. .....+-. ....++++... .| .+|.=+.-.
T Consensus 1 ViIp~~Ne~~~l~~~l~sl~~~~~~~eIivv-dd~S~--D~t~~~~~~~~~~~~v~~i~~~~~~~~~Gk~~aln~g~~~~ 77 (191)
T cd06436 1 VLVPCLNEEAVIQRTLASLLRNKPNFLVLVI-DDASD--DDTAGIVRLAITDSRVHLLRRHLPNARTGKGDALNAAYDQI 77 (191)
T ss_pred CEEeccccHHHHHHHHHHHHhCCCCeEEEEE-ECCCC--cCHHHHHhheecCCcEEEEeccCCcCCCCHHHHHHHHHHHH
Confidence 6889999999999999999754322367777 43222 21111111 12346666532 11 122211110
Q ss_pred C--------CCCcceEEEeeCCCCCCChHHHHHHhh
Q psy979 90 A--------EIETEAVLSIDDDITMLTPDELEFGFE 117 (176)
Q Consensus 90 ~--------~I~T~AVlslDDDv~~l~~~eLeFaF~ 117 (176)
. ..+.+-|+.+|.|.. +.++.|+..-+
T Consensus 78 ~~~~~~~g~~~~~d~v~~~DaD~~-~~~~~l~~~~~ 112 (191)
T cd06436 78 RQILIEEGADPERVIIAVIDADGR-LDPNALEAVAP 112 (191)
T ss_pred hhhccccccCCCccEEEEECCCCC-cCHhHHHHHHH
Confidence 0 113468999999996 78887776433
No 57
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=30.96 E-value=1.3e+02 Score=30.62 Aligned_cols=94 Identities=10% Similarity=-0.036 Sum_probs=56.5
Q ss_pred CCCceEEEEeccCCc-hHHHHHHHHHhcCCCcc---eEEEEecCCCCCCCCCCCCCCCCCceEEEeCCCccc---c--cc
Q psy979 15 STVRKYIPHDCIDRV-HSLFLLMEQLALVPSVS---KILVIWNNQAKSPPPVSKWPKISKSWTIIRTDENKL---S--KR 85 (176)
Q Consensus 15 ~~~r~~i~i~Ty~R~-~~L~~~l~~~~~~p~l~---~IvVvWn~~~~~pP~~~~~p~~~vpV~v~~~~~nsL---n--nR 85 (176)
..++++|+|.||+-. +.+.+++....+..+=+ +|+|+ ++.+ .+....+-+ ...++++..++|.- . |.
T Consensus 258 ~~P~VsViIPtYNE~~~vv~~tI~a~l~~dYP~~k~EViVV-DDgS--~D~t~~la~-~~~v~yI~R~~n~~gKAGnLN~ 333 (852)
T PRK11498 258 LWPTVDIFVPTYNEDLNVVKNTIYASLGIDWPKDKLNIWIL-DDGG--REEFRQFAQ-EVGVKYIARPTHEHAKAGNINN 333 (852)
T ss_pred CCCcEEEEEecCCCcHHHHHHHHHHHHhccCCCCceEEEEE-eCCC--ChHHHHHHH-HCCcEEEEeCCCCcchHHHHHH
Confidence 346899999999876 56677887765554432 67776 4432 221111100 23567665443321 1 22
Q ss_pred cCCCCCCCcceEEEeeCCCCCCChHHHHHH
Q psy979 86 FYPYAEIETEAVLSIDDDITMLTPDELEFG 115 (176)
Q Consensus 86 F~P~~~I~T~AVlslDDDv~~l~~~eLeFa 115 (176)
.+ ...+.|-|+.+|-|.. +.++-|+..
T Consensus 334 aL--~~a~GEyIavlDAD~i-p~pdfL~~~ 360 (852)
T PRK11498 334 AL--KYAKGEFVAIFDCDHV-PTRSFLQMT 360 (852)
T ss_pred HH--HhCCCCEEEEECCCCC-CChHHHHHH
Confidence 22 2357899999999996 788777753
No 58
>COG3062 NapD Uncharacterized protein involved in formation of periplasmic nitrate reductase [Inorganic ion transport and metabolism]
Probab=28.03 E-value=1.5e+02 Score=22.20 Aligned_cols=39 Identities=15% Similarity=0.255 Sum_probs=31.4
Q ss_pred ceEEEEeccCCchHHHHHHHHHhcCCCcceEEEEecCCC
Q psy979 18 RKYIPHDCIDRVHSLFLLMEQLALVPSVSKILVIWNNQA 56 (176)
Q Consensus 18 r~~i~i~Ty~R~~~L~~~l~~~~~~p~l~~IvVvWn~~~ 56 (176)
+..|++.-=+|.+.|...+++++..|.|=.+..|....+
T Consensus 42 GKlVVVie~~~~~~l~~tie~i~nl~gVlav~lVyhqqd 80 (94)
T COG3062 42 GKLVVVIEAEDSETLLETIESIRNLPGVLAVSLVYHQQD 80 (94)
T ss_pred ceEEEEEEcCchHHHHHHHHHHhcCCceeEEEEEEEEEe
Confidence 355555555889999999999999999999999887653
No 59
>PF08078 PsaX: PsaX family; InterPro: IPR012986 This family consists of the PsaX family of photosystem I (PSI) protein subunits. PSI is a large multi-subunit pigment protein complex embedded in the thylakoid membranes of green plants and cyanobacteria. PsaX is one of the 12 protein subunits found in PSI and these subunits are arranged as monomers or trimers within the membrane as shown by the structure of the trimeric complex from Synechococcus elongatus [].; PDB: 3PCQ_X 1JB0_X.
Probab=27.03 E-value=42 Score=20.82 Aligned_cols=10 Identities=60% Similarity=0.893 Sum_probs=7.7
Q ss_pred HHHHHHHHHh
Q psy979 144 IAMNFLVAHI 153 (176)
Q Consensus 144 IaMNflVa~~ 153 (176)
+++||+||..
T Consensus 23 LaINflVAay 32 (37)
T PF08078_consen 23 LAINFLVAAY 32 (37)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5789999853
No 60
>PRK15039 transcriptional repressor RcnR to maintain nickel and cobalt homeostasis; Provisional
Probab=26.07 E-value=78 Score=23.20 Aligned_cols=22 Identities=9% Similarity=0.347 Sum_probs=17.8
Q ss_pred hHHHHhcCCCChhHHHHHHHHH
Q psy979 130 PIRTYVDSHMNCEDIAMNFLVA 151 (176)
Q Consensus 130 ~ir~~VD~~~NCEDIaMNflVa 151 (176)
.+.+.|++...|+||+..+-..
T Consensus 24 gI~~Miee~~~C~dIl~Ql~Av 45 (90)
T PRK15039 24 ALKKMLDEPHECAAVLQQIAAI 45 (90)
T ss_pred HHHHHHHCCCCHHHHHHHHHHH
Confidence 5778899999999999766543
No 61
>PF02583 Trns_repr_metal: Metal-sensitive transcriptional repressor; InterPro: IPR003735 This entry describes proteins of unknown function.; PDB: 2HH7_A 3AAI_A 4ADZ_B.
Probab=24.27 E-value=69 Score=22.85 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=17.2
Q ss_pred hHHHHhcCCCChhHHHHHHHHH
Q psy979 130 PIRTYVDSHMNCEDIAMNFLVA 151 (176)
Q Consensus 130 ~ir~~VD~~~NCEDIaMNflVa 151 (176)
.+.+.|++..-|+||+..+-.+
T Consensus 20 gI~~Miee~~~C~dIl~Qi~Av 41 (85)
T PF02583_consen 20 GIERMIEEDRDCEDILQQIAAV 41 (85)
T ss_dssp HHHHHHHTTE-HHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHH
Confidence 5778899999999999876554
No 62
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=24.03 E-value=2.3e+02 Score=28.13 Aligned_cols=100 Identities=17% Similarity=0.126 Sum_probs=60.0
Q ss_pred hhcCCCceEEEEeccCCchHHHHHHHHH-hcCCCcc-eEEEE--ecCCCCCCCCCCCCCCCCCc-eEEEeCCCc------
Q psy979 12 IAGSTVRKYIPHDCIDRVHSLFLLMEQL-ALVPSVS-KILVI--WNNQAKSPPPVSKWPKISKS-WTIIRTDEN------ 80 (176)
Q Consensus 12 ~~~~~~r~~i~i~Ty~R~~~L~~~l~~~-~~~p~l~-~IvVv--Wn~~~~~pP~~~~~p~~~vp-V~v~~~~~n------ 80 (176)
-+....+++|++..|+=.+.+.++|+++ ++..+=+ +|+|+ =|+.++..- .... ....| ++++..+.+
T Consensus 66 ~~~~~~~vsIlVPa~nE~~VI~~~v~~ll~~ldYp~~~I~v~~~~nD~~T~~~-~~~~-~~~~p~~~~v~~~~~gp~gKa 143 (703)
T PRK15489 66 RERDEQPLAIMVPAWKEYDVIAKMIENMLATLDYRRYVIFVGTYPNDAETITE-VERM-RRRYKRLVRVEVPHDGPTCKA 143 (703)
T ss_pred cccCCCceEEEEeCCCcHHHHHHHHHHHHhcCCCCCeEEEEEecCCCccHHHH-HHHH-hccCCcEEEEEcCCCCCCCHH
Confidence 3456789999999999999999999995 5554433 44443 233211100 0000 01122 444433333
Q ss_pred -cccc------ccCCCCCCCcceEEEeeCCCCCCChHHHHH
Q psy979 81 -KLSK------RFYPYAEIETEAVLSIDDDITMLTPDELEF 114 (176)
Q Consensus 81 -sLnn------RF~P~~~I~T~AVlslDDDv~~l~~~eLeF 114 (176)
-||. |+-....++.++|...|=|-. +++++|..
T Consensus 144 ~ALN~~l~~~~~~e~~~~~~fa~vvi~DAEd~-~~P~~L~~ 183 (703)
T PRK15489 144 DCLNWIIQAIFRYEAGHGIEFAGVILHDSEDV-LHPLELKY 183 (703)
T ss_pred HHHHHHHHHHHhhhhhccCccceEEEEcCCCC-CChhHHHH
Confidence 2565 444445777889999998775 79998863
No 63
>PRK06455 riboflavin synthase; Provisional
Probab=23.77 E-value=1.4e+02 Score=24.17 Aligned_cols=38 Identities=16% Similarity=0.100 Sum_probs=28.2
Q ss_pred CceEEEEeccCCchHHHHHHHHHhcCCCcceEEEEecC
Q psy979 17 VRKYIPHDCIDRVHSLFLLMEQLALVPSVSKILVIWNN 54 (176)
Q Consensus 17 ~r~~i~i~Ty~R~~~L~~~l~~~~~~p~l~~IvVvWn~ 54 (176)
-|+-|+..||+|..++.-.+..+.+...=.+|.++|--
T Consensus 2 ~kigIV~s~fn~~~L~~gAi~~L~~~g~~~~I~v~~VP 39 (155)
T PRK06455 2 MKIGIADTTFARVDMGSAAIDELRKLDPSAKIIRYTVP 39 (155)
T ss_pred cEEEEEEEecchHHHHHHHHHHHHhcCCCCceEEEECC
Confidence 36789999999999999999999874311246666543
No 64
>PRK04435 hypothetical protein; Provisional
Probab=23.40 E-value=1.7e+02 Score=22.80 Aligned_cols=35 Identities=23% Similarity=0.189 Sum_probs=28.5
Q ss_pred CceEEEEeccCCchHHHHHHHHHhcCCCcceEEEE
Q psy979 17 VRKYIPHDCIDRVHSLFLLMEQLALVPSVSKILVI 51 (176)
Q Consensus 17 ~r~~i~i~Ty~R~~~L~~~l~~~~~~p~l~~IvVv 51 (176)
...++.+.+-.+...|..+++.+.++++|.+|-++
T Consensus 110 a~vs~tVevs~~~~~L~~Li~~L~~i~gV~~V~i~ 144 (147)
T PRK04435 110 ANVTISIDTSSMEGDIDELLEKLRNLDGVEKVELI 144 (147)
T ss_pred EEEEEEEEeCChHHHHHHHHHHHHcCCCcEEEEEE
Confidence 34566666666667999999999999999999876
No 65
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The
Probab=23.36 E-value=1.5e+02 Score=21.52 Aligned_cols=44 Identities=14% Similarity=0.277 Sum_probs=36.0
Q ss_pred hcCCCceEEEEeccCCchHHHHHHHHHhcCCCcceEEEEecCCCC
Q psy979 13 AGSTVRKYIPHDCIDRVHSLFLLMEQLALVPSVSKILVIWNNQAK 57 (176)
Q Consensus 13 ~~~~~r~~i~i~Ty~R~~~L~~~l~~~~~~p~l~~IvVvWn~~~~ 57 (176)
-|+..|+++=.+...+.+.+.++|+++.+++. -.++|-|.++++
T Consensus 8 daEfRRFsl~r~~~~~f~ef~~ll~~lH~l~~-~~f~i~Y~D~~g 51 (80)
T cd06403 8 DAEFRRFSLDRNKPGKFEDFYKLLEHLHHIPN-VDFLIGYTDPHG 51 (80)
T ss_pred CCeEEEEEeccccCcCHHHHHHHHHHHhCCCC-CcEEEEEeCCCC
Confidence 46788999888877888999999999998888 467888888644
No 66
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=20.70 E-value=70 Score=25.30 Aligned_cols=91 Identities=14% Similarity=0.226 Sum_probs=53.0
Q ss_pred cCCchHHHHHHHHHhcCCCcceEEEEecCCCCCCCCC-CCCCCCCCceEEEeCCC---cccccccCCCCCCCcceEEEee
Q psy979 26 IDRVHSLFLLMEQLALVPSVSKILVIWNNQAKSPPPV-SKWPKISKSWTIIRTDE---NKLSKRFYPYAEIETEAVLSID 101 (176)
Q Consensus 26 y~R~~~L~~~l~~~~~~p~l~~IvVvWn~~~~~pP~~-~~~p~~~vpV~v~~~~~---nsLnnRF~P~~~I~T~AVlslD 101 (176)
+.-..+|...++.+.+++.+.+|+|+=+......... ..+ ....++.++.... .|+.+=+.-..+-..++||.++
T Consensus 25 i~Gkpll~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~si~~al~~~~~~~~~~vlv~~ 103 (218)
T cd02516 25 LGGKPVLEHTLEAFLAHPAIDEIVVVVPPDDIDLAKELAKY-GLSKVVKIVEGGATRQDSVLNGLKALPDADPDIVLIHD 103 (218)
T ss_pred ECCeEHHHHHHHHHhcCCCCCEEEEEeChhHHHHHHHHHhc-ccCCCeEEECCchHHHHHHHHHHHhcccCCCCEEEEcc
Confidence 3456899999999999888899998866542111100 000 1123455554321 2222211111112578999999
Q ss_pred CCCCCCChHHHHHHhh
Q psy979 102 DDITMLTPDELEFGFE 117 (176)
Q Consensus 102 DDv~~l~~~eLeFaF~ 117 (176)
=|.-.++++.++...+
T Consensus 104 ~D~P~i~~~~i~~li~ 119 (218)
T cd02516 104 AARPFVSPELIDRLID 119 (218)
T ss_pred CcCCCCCHHHHHHHHH
Confidence 9987678887776666
No 67
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=20.28 E-value=2e+02 Score=25.02 Aligned_cols=96 Identities=13% Similarity=0.135 Sum_probs=60.2
Q ss_pred CCceEEEEeccCCch-HHHHHHHHHhcCCCcc-eEEEEecCCCCCCCCCCCCCC----CCCceEEEeC-CC-----cccc
Q psy979 16 TVRKYIPHDCIDRVH-SLFLLMEQLALVPSVS-KILVIWNNQAKSPPPVSKWPK----ISKSWTIIRT-DE-----NKLS 83 (176)
Q Consensus 16 ~~r~~i~i~Ty~R~~-~L~~~l~~~~~~p~l~-~IvVvWn~~~~~pP~~~~~p~----~~vpV~v~~~-~~-----nsLn 83 (176)
.++.+|++.+|+=.. .+.+++++..+..+=. +|+||=.+.. +.. ....-. ...-+++... .+ +.+|
T Consensus 53 ~p~vsviiP~ynE~~~~~~~~l~s~~~~dyp~~evivv~d~~~-d~~-~~~~~~~~~~~~~~~~~~~~~~~~~gK~~al~ 130 (439)
T COG1215 53 LPKVSVIIPAYNEEPEVLEETLESLLSQDYPRYEVIVVDDGST-DET-YEILEELGAEYGPNFRVIYPEKKNGGKAGALN 130 (439)
T ss_pred CCceEEEEecCCCchhhHHHHHHHHHhCCCCCceEEEECCCCC-hhH-HHHHHHHHhhcCcceEEEeccccCccchHHHH
Confidence 589999999997554 9999999998777654 7777755432 222 111101 1112344311 11 2344
Q ss_pred cccCCCCCCCcceEEEeeCCCCCCChHHHHHHhh
Q psy979 84 KRFYPYAEIETEAVLSIDDDITMLTPDELEFGFE 117 (176)
Q Consensus 84 nRF~P~~~I~T~AVlslDDDv~~l~~~eLeFaF~ 117 (176)
+-+ ..-+.|-|+.+|-|.. +.++.|.-+-.
T Consensus 131 ~~l---~~~~~d~V~~~DaD~~-~~~d~l~~~~~ 160 (439)
T COG1215 131 NGL---KRAKGDVVVILDADTV-PEPDALRELVS 160 (439)
T ss_pred HHH---hhcCCCEEEEEcCCCC-CChhHHHHHHh
Confidence 433 3444999999999996 88888877655
No 68
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=20.01 E-value=2.3e+02 Score=23.04 Aligned_cols=80 Identities=14% Similarity=0.098 Sum_probs=46.6
Q ss_pred EEEeccCCc-hHHHHHHHHHhcCCCc-----------ceEEEEecCCCCCCCCCCCCCCCCCceEEEeCCCcc----ccc
Q psy979 21 IPHDCIDRV-HSLFLLMEQLALVPSV-----------SKILVIWNNQAKSPPPVSKWPKISKSWTIIRTDENK----LSK 84 (176)
Q Consensus 21 i~i~Ty~R~-~~L~~~l~~~~~~p~l-----------~~IvVvWn~~~~~pP~~~~~p~~~vpV~v~~~~~ns----Lnn 84 (176)
|+|.+|+-. ..|.++|+++.+..+= -+|+|| .+.... . ...+.++ ++.
T Consensus 1 v~ip~yNE~~~~i~~~l~sv~~q~y~~~~~~~~~~~~~evivv-~Dgs~d-~--------------~~gk~~~~~~~~~~ 64 (244)
T cd04190 1 VCVTMYNEDEEELARTLDSILKNDYPFCARGGDSWKKIVVCVI-FDGAIK-K--------------NRGKRDSQLWFFNY 64 (244)
T ss_pred CEEeeecCCHHHHHHHHHHHHHhhHHHHhcCCCCccEEEEEEE-eCCccc-c--------------cCcchHHHHHHHHH
Confidence 578899986 7899999999766553 245554 332211 0 0001111 011
Q ss_pred ccCCCCCCCcceEEEeeCCCCCCChHHHHHHhh
Q psy979 85 RFYPYAEIETEAVLSIDDDITMLTPDELEFGFE 117 (176)
Q Consensus 85 RF~P~~~I~T~AVlslDDDv~~l~~~eLeFaF~ 117 (176)
...-...-++|.|+.+|.|.. +.++-|+..-+
T Consensus 65 ~~~~~~~a~~e~i~~~DaD~~-~~~~~l~~l~~ 96 (244)
T cd04190 65 FCRVLFPDDPEFILLVDADTK-FDPDSIVQLYK 96 (244)
T ss_pred HHHHhhcCCCCEEEEECCCCc-CCHhHHHHHHH
Confidence 011112338999999999996 78877766544
Done!