Query psy979
Match_columns 176
No_of_seqs 107 out of 263
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 19:47:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy979.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/979hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1omz_A Alpha-1,4-N-acetylhexos 100.0 2.8E-52 9.7E-57 360.4 11.1 147 14-163 25-230 (293)
2 1qg8_A Protein (spore coat pol 95.2 0.01 3.5E-07 46.6 2.8 97 17-117 1-111 (255)
3 3bcv_A Putative glycosyltransf 94.9 0.011 3.8E-07 45.9 2.4 99 16-117 4-107 (240)
4 2ffu_A Ppgalnact-2, polypeptid 94.0 0.022 7.5E-07 50.3 2.2 100 15-117 64-169 (501)
5 1xhb_A Polypeptide N-acetylgal 93.8 0.021 7.3E-07 49.7 1.9 101 15-117 27-137 (472)
6 2z86_A Chondroitin synthase; G 92.9 0.076 2.6E-06 47.8 4.1 97 17-117 93-197 (625)
7 2d7i_A Polypeptide N-acetylgal 92.3 0.046 1.6E-06 49.5 1.7 100 15-117 110-219 (570)
8 4fix_A UDP-galactofuranosyl tr 91.6 0.039 1.3E-06 51.5 0.5 100 15-117 178-291 (657)
9 2z86_A Chondroitin synthase; G 80.8 0.76 2.6E-05 41.2 2.5 99 15-116 373-476 (625)
10 3l7i_A Teichoic acid biosynthe 80.1 0.35 1.2E-05 44.8 0.0 98 17-117 2-106 (729)
11 2fy7_A Beta-1,4-galactosyltran 78.6 2.5 8.4E-05 35.2 4.8 79 15-111 63-146 (287)
12 3ckj_A Putative uncharacterize 74.4 4.1 0.00014 33.7 5.0 100 15-116 46-154 (329)
13 3f1y_A Mannosyl-3-phosphoglyce 67.8 5 0.00017 34.7 4.3 102 12-117 89-203 (387)
14 4hg6_A Cellulose synthase subu 61.0 2.8 9.7E-05 39.6 1.5 101 14-117 137-261 (802)
15 1fo8_A Alpha-1,3-mannosyl-glyc 48.9 11 0.00038 32.3 3.1 91 19-115 4-120 (343)
16 1hcw_A BBA1; growth response p 36.9 6.8 0.00023 21.4 -0.1 23 19-41 2-24 (26)
17 2nxv_A ATP synthase subunits r 27.4 63 0.0022 25.2 4.1 38 16-54 15-55 (249)
18 1jb0_X Photosystem I subunit P 25.9 29 0.00098 20.5 1.3 10 144-153 20-29 (35)
19 1i52_A 4-diphosphocytidyl-2-C- 20.8 1.4E+02 0.0048 22.6 4.9 86 28-119 34-124 (236)
No 1
>1omz_A Alpha-1,4-N-acetylhexosaminyltransferase EXTL2; rossmann fold, DXD motif; HET: UD2; 2.10A {Mus musculus} SCOP: c.68.1.15 PDB: 1omx_A* 1on6_A* 1on8_A*
Probab=100.00 E-value=2.8e-52 Score=360.36 Aligned_cols=147 Identities=29% Similarity=0.525 Sum_probs=132.6
Q ss_pred cCCCceEEEEeccCCchHHHHHHHHHhcCCCcceEEEEecCCCCCCCCCCCCCCC---CCceEEEeCCCcccccccCCCC
Q psy979 14 GSTVRKYIPHDCIDRVHSLFLLMEQLALVPSVSKILVIWNNQAKSPPPVSKWPKI---SKSWTIIRTDENKLSKRFYPYA 90 (176)
Q Consensus 14 ~~~~r~~i~i~Ty~R~~~L~~~l~~~~~~p~l~~IvVvWn~~~~~pP~~~~~p~~---~vpV~v~~~~~nsLnnRF~P~~ 90 (176)
...+++|++|+||+|.++|+++|+||++||+|+||+||||+++.+|| ...||.+ .+||+|+++++|||||||+|++
T Consensus 25 ~~~~~FTvvi~ty~R~~~L~~lv~~~~~~~~v~~IvVvWn~~~~~pp-~~~~~~~~~~~vpv~v~~~~~nsLnnRF~p~~ 103 (293)
T 1omz_A 25 SALDSFTLIMQTYNRTDLLLRLLNHYQAVPSLHKVIVVWNNVGEKGP-EELWNSLGPHPIPVIFKPQTANKMRNRLQVFP 103 (293)
T ss_dssp -CTTCEEEEEEESSCHHHHHHHHHHHTTSTTEEEEEEEECCTTCCCT-HHHHHHTCCCSSCEEEEECSSCCGGGGGSCCT
T ss_pred CCCCceEEEEEeecccHHHHHHHHHHhcCCCCCeEEEEeCCCCCCCC-hhhccccCCCCccEEEEeCCCCchhhccCCCc
Confidence 34679999999999999999999999999999999999999865444 4568665 6999999999999999999999
Q ss_pred CCCcceEEEeeCCCCCCChHHHHHHhh-----------------------------------------------------
Q psy979 91 EIETEAVLSIDDDITMLTPDELEFGFE----------------------------------------------------- 117 (176)
Q Consensus 91 ~I~T~AVlslDDDv~~l~~~eLeFaF~----------------------------------------------------- 117 (176)
+|+|+|||++|||+. ++|+||+|||+
T Consensus 104 ~i~T~AVLslDDDv~-l~~~el~faF~vWr~~PdRlVGf~~R~H~~~~~~~w~Y~~~~~~~p~~~~~~~YSmVLTgaAF~ 182 (293)
T 1omz_A 104 EVETNAVLMVDDDTL-ISAQDLVFAFSIWQQFPDQIIGFVPRKHVSTSSGIYSYGGFELQTPGPGNGDQYSMVLIGASFF 182 (293)
T ss_dssp TCCSSEEEEECTTEE-ECHHHHHHHHHHHTTSTTSEEESCEEEEEEEETTEEEEECTTSCCCSSSSSCCBSEECTTEEEE
T ss_pred cCCcCEEEEEcCCCC-CCHHHHHHHHHHHHHCccceecCchhhhccCCCCccccccccccccccCCCCeEEEEECchHHh
Confidence 999999999999995 89999999999
Q ss_pred --hccccccccCcHhHHHHhcCCCChhHHHHHHHHHHhhCCCC-eEeee
Q psy979 118 --YWNYMYTAHMPTPIRTYVDSHMNCEDIAMNFLVAHITAKAP-FIHSI 163 (176)
Q Consensus 118 --~y~~~Yt~~lp~~ir~~VD~~~NCEDIaMNflVa~~T~~pP-i~V~~ 163 (176)
||+++|+ .+|+++|+|||+++||||||||||||++||+|| ++|++
T Consensus 183 Hr~Yl~lyt-~~p~~ir~~VDe~~NCEDIaMNFlVA~~T~~pP~i~vk~ 230 (293)
T 1omz_A 183 NSKYLELFQ-KQPAAVHALIDETQNCDDIAMNFLVTRHTGKPSGIFVKP 230 (293)
T ss_dssp ETHHHHHHH-TSCHHHHHHHHHHTCCHHHHHHHHHHHHHSSCSEEEECC
T ss_pred ccHHHHHHH-HhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCcceecc
Confidence 4556777 599999999999999999999999999999999 65653
No 2
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=95.20 E-value=0.01 Score=46.61 Aligned_cols=97 Identities=10% Similarity=0.066 Sum_probs=63.1
Q ss_pred CceEEEEeccCCchHHHHHHHHHhcCCCc-ceEEEEecCCCCCCCCC---CCCCCCCCceEEEeCC--------Ccc--c
Q psy979 17 VRKYIPHDCIDRVHSLFLLMEQLALVPSV-SKILVIWNNQAKSPPPV---SKWPKISKSWTIIRTD--------ENK--L 82 (176)
Q Consensus 17 ~r~~i~i~Ty~R~~~L~~~l~~~~~~p~l-~~IvVvWn~~~~~pP~~---~~~p~~~vpV~v~~~~--------~ns--L 82 (176)
.+++|+|.||+|.+.|.+.|+++.+..+- -+|+||=++. .. ... ..+.. ...|+++..+ .|. -
T Consensus 1 p~vSViIp~yn~~~~l~~~l~Sl~~q~~~~~eiivvDd~S-~d-~t~~~~~~~~~-~~~i~~i~~~~~~~~~~~~n~G~~ 77 (255)
T 1qg8_A 1 PKVSVIMTSYNKSDYVAKSISSILSQTFSDFELFIMDDNS-NE-ETLNVIRPFLN-DNRVRFYQSDISGVKERTEKTRYA 77 (255)
T ss_dssp CCEEEEEEESSCTTTHHHHHHHHHTCSCCCEEEEEEECSC-CH-HHHHHHGGGGG-STTEEEEECCCCSHHHHHSSCHHH
T ss_pred CeEEEEEEcCCCHHHHHHHHHHHHhccCCceEEEEEECCC-Cc-hHHHHHHHHhh-cCCEEEEecccccccccccccCHH
Confidence 36899999999999999999999654332 3666665542 11 111 11211 3568888876 342 1
Q ss_pred ccccCCCCCCCcceEEEeeCCCCCCChHHHHHHhh
Q psy979 83 SKRFYPYAEIETEAVLSIDDDITMLTPDELEFGFE 117 (176)
Q Consensus 83 nnRF~P~~~I~T~AVlslDDDv~~l~~~eLeFaF~ 117 (176)
.+|-.-....+++-|+.+|+|.. +.++-|+...+
T Consensus 78 ~a~N~gi~~a~g~~i~~lD~Dd~-~~~~~l~~~~~ 111 (255)
T 1qg8_A 78 ALINQAIEMAEGEYITYATDDNI-YMPDRLLKMVR 111 (255)
T ss_dssp HHHHHHHHHCCCSEEEEEETTEE-ECTTHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEeCCCCc-cChHHHHHHHH
Confidence 23333334568999999999996 78777776554
No 3
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=94.95 E-value=0.011 Score=45.85 Aligned_cols=99 Identities=11% Similarity=-0.028 Sum_probs=61.7
Q ss_pred CCceEEEEeccCCchHHHHHHHHHhcCCC-cceEEEEecCCCCCCCCCC---CCCCCCCceEEEeCCCccc-ccccCCCC
Q psy979 16 TVRKYIPHDCIDRVHSLFLLMEQLALVPS-VSKILVIWNNQAKSPPPVS---KWPKISKSWTIIRTDENKL-SKRFYPYA 90 (176)
Q Consensus 16 ~~r~~i~i~Ty~R~~~L~~~l~~~~~~p~-l~~IvVvWn~~~~~pP~~~---~~p~~~vpV~v~~~~~nsL-nnRF~P~~ 90 (176)
..+++|+|.||++.+.|.+.|+.+.+..+ --+|+||=++. . ..... .+..-...|+++..+.... .+|-.-..
T Consensus 4 ~p~vsViIp~yn~~~~l~~~l~Sl~~q~~~~~eiIvvDd~S-~-d~t~~~~~~~~~~~~~i~~i~~~n~G~~~a~N~g~~ 81 (240)
T 3bcv_A 4 IPKVSVIVPIYNVEKYLDQCVQALLAQTLSDIEIILIDDES-P-DNCPKICDDYAAQYPNIKVIHKKNAGLGMACNSGLD 81 (240)
T ss_dssp CCSEEEEEEESSCTTTHHHHHHHHHTCSSSSEEEEEEECCC-S-SSHHHHHHHHHHHCSSEEEEECCCCCHHHHHHHHHH
T ss_pred CCcEEEEEecCCCHHHHHHHHHHHHhCcCCCeEEEEEECCC-C-cCHHHHHHHHHhhCCCEEEEECCCCChHHHHHHHHH
Confidence 35799999999999999999999864322 23777776653 1 11110 0100012477776432221 22222334
Q ss_pred CCCcceEEEeeCCCCCCChHHHHHHhh
Q psy979 91 EIETEAVLSIDDDITMLTPDELEFGFE 117 (176)
Q Consensus 91 ~I~T~AVlslDDDv~~l~~~eLeFaF~ 117 (176)
..+++-|+.+|+|.. +.++-|+-..+
T Consensus 82 ~a~g~~i~~lD~Dd~-~~~~~l~~l~~ 107 (240)
T 3bcv_A 82 VATGEYVAFCDSDDY-VDSDMYMTMYN 107 (240)
T ss_dssp HCCSSEEEECCTTCC-CCTTHHHHHHH
T ss_pred HcCCCEEEEECCCCc-CCHHHHHHHHH
Confidence 567899999999996 78877766554
No 4
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=93.96 E-value=0.022 Score=50.33 Aligned_cols=100 Identities=11% Similarity=0.119 Sum_probs=64.3
Q ss_pred CCCceEEEEeccCCch-HHHHHHHHHhc-CC-C-cceEEEEecCCCCCCCCCCCCCCCCCceEEEeCCCcc--cccccCC
Q psy979 15 STVRKYIPHDCIDRVH-SLFLLMEQLAL-VP-S-VSKILVIWNNQAKSPPPVSKWPKISKSWTIIRTDENK--LSKRFYP 88 (176)
Q Consensus 15 ~~~r~~i~i~Ty~R~~-~L~~~l~~~~~-~p-~-l~~IvVvWn~~~~~pP~~~~~p~~~vpV~v~~~~~ns--LnnRF~P 88 (176)
.-++++|+|.||++.. .|.+.|+.+.+ .+ . ..+|+||=++.. .+.....-.-...|++++.+.|. -..|-.-
T Consensus 64 ~~p~vSVIIp~yN~~~~~L~~~l~Sl~~q~~~~~~~EIIvVDDgS~--D~t~~~~~~~~~~v~vi~~~~n~G~~~A~N~G 141 (501)
T 2ffu_A 64 DLPATSVVITFHNEARSALLRTVVSVLKKSPPHLIKEIILVDDYSN--DPEDGALLGKIEKVRVLRNDRREGLMRSRVRG 141 (501)
T ss_dssp SCCCEEEEEEESSCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCS--CTHHHHGGGGBTTEEEEECSSCCHHHHHHHHH
T ss_pred CCCCEEEEEEeCcCcHHHHHHHHHHHHhhCchhhceeEEEEECCCC--chHHHHHHhcCCCEEEEECCCCcCHHHHHHHH
Confidence 3467999999999987 99999999843 33 2 248988877632 22110110112358888866652 2223223
Q ss_pred CCCCCcceEEEeeCCCCCCChHHHHHHhh
Q psy979 89 YAEIETEAVLSIDDDITMLTPDELEFGFE 117 (176)
Q Consensus 89 ~~~I~T~AVlslDDDv~~l~~~eLeFaF~ 117 (176)
...-+++.|+.+|+|.. +.++-|+-..+
T Consensus 142 ~~~A~gd~i~flD~D~~-~~p~~L~~ll~ 169 (501)
T 2ffu_A 142 ADAAQAKVLTFLDSHCE-CNEHWLEPLLE 169 (501)
T ss_dssp HHHCCSSEEEECCSSEE-ECTTCHHHHHH
T ss_pred HHhcCCCEEEEECCCcc-cCccHHHHHHH
Confidence 34457899999999996 77776665544
No 5
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=93.80 E-value=0.021 Score=49.73 Aligned_cols=101 Identities=11% Similarity=0.083 Sum_probs=65.6
Q ss_pred CCCceEEEEeccCCc-hHHHHHHHHHhcCCC--c-ceEEEEecCCCCCCCCCC---CC-CCCCCceEEEeCCCcc--ccc
Q psy979 15 STVRKYIPHDCIDRV-HSLFLLMEQLALVPS--V-SKILVIWNNQAKSPPPVS---KW-PKISKSWTIIRTDENK--LSK 84 (176)
Q Consensus 15 ~~~r~~i~i~Ty~R~-~~L~~~l~~~~~~p~--l-~~IvVvWn~~~~~pP~~~---~~-p~~~vpV~v~~~~~ns--Lnn 84 (176)
.-++++|+|.+|++. +.|.+.|+++.+... + .+|+||=++.. .+-... .+ ......|++++.+.|. -..
T Consensus 27 ~~p~vSVIIp~yN~~~~~l~~~l~Sl~~q~~~~~~~EIIvVDd~S~-d~~t~~~l~~~~~~~~~~v~vi~~~~n~G~~~a 105 (472)
T 1xhb_A 27 NLPTTSVVIVFHNEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASE-RDFLKRPLESYVKKLKVPVHVIRMEQRSGLIRA 105 (472)
T ss_dssp CCCCEEEEEEESSCCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCC-CGGGTHHHHHHHHSSSSCEEEEECSSCCCHHHH
T ss_pred CCCCeEEEEEeCCCCHHHHHHHHHHHHhcCcHhHceEEEEEECCCC-cHHHHHHHHHHHHHCCCcEEEEECCCCCChHHH
Confidence 457899999999999 999999999864332 2 48988877642 210110 01 1112258999877653 122
Q ss_pred ccCCCCCCCcceEEEeeCCCCCCChHHHHHHhh
Q psy979 85 RFYPYAEIETEAVLSIDDDITMLTPDELEFGFE 117 (176)
Q Consensus 85 RF~P~~~I~T~AVlslDDDv~~l~~~eLeFaF~ 117 (176)
|-.-...-+++.|+.+|+|.. +.++-|+-..+
T Consensus 106 ~N~g~~~A~gd~i~flD~D~~-~~p~~L~~ll~ 137 (472)
T 1xhb_A 106 RLKGAAVSRGQVITFLDAHCE-CTAGWLEPLLA 137 (472)
T ss_dssp HHHHHHHCCSSEEEEEESSEE-ECTTCHHHHHH
T ss_pred HHHHHHhccCCeEEEECCCeE-eCccHHHHHHH
Confidence 222233456899999999996 78777766544
No 6
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=92.93 E-value=0.076 Score=47.81 Aligned_cols=97 Identities=12% Similarity=0.024 Sum_probs=63.6
Q ss_pred CceEEEEeccCCchHHHHHHHHHhcC--CCcceEEEEecCCCCCCCCC---CCCCCCCCceEEEeCCCccc---ccccCC
Q psy979 17 VRKYIPHDCIDRVHSLFLLMEQLALV--PSVSKILVIWNNQAKSPPPV---SKWPKISKSWTIIRTDENKL---SKRFYP 88 (176)
Q Consensus 17 ~r~~i~i~Ty~R~~~L~~~l~~~~~~--p~l~~IvVvWn~~~~~pP~~---~~~p~~~vpV~v~~~~~nsL---nnRF~P 88 (176)
.+++|+|.||++.+.|.+.|+.+.+. +.--+|+||=++.. .... ..+.. ..+++++..+.+.. .+|-.-
T Consensus 93 p~vsviIp~~n~~~~l~~~l~sl~~q~~~~~~eiivvDd~s~--d~t~~~~~~~~~-~~~i~~i~~~~~~~g~~~a~N~g 169 (625)
T 2z86_A 93 DGLSIVIPTYNRAKILAITLACLCNQKTIYDYEVIVADDGSK--ENIEEIVREFES-LLNIKYVRQKDYGYQLCAVRNLG 169 (625)
T ss_dssp CCEEEEEEESSCHHHHHHHHHHHHTCCCSSCEEEEEEEESCS--SCHHHHHHTTTT-TSCEEEEEECCCSCCHHHHHHHH
T ss_pred CcEEEEEecCCcHHHHHHHHHHHHhhccCCCeEEEEEeCCCc--hhHHHHHHHhhh-cCCeEEEEeCCCCcchhHHHHHH
Confidence 57999999999999999999999654 24567888876642 2111 11211 24677776544321 122223
Q ss_pred CCCCCcceEEEeeCCCCCCChHHHHHHhh
Q psy979 89 YAEIETEAVLSIDDDITMLTPDELEFGFE 117 (176)
Q Consensus 89 ~~~I~T~AVlslDDDv~~l~~~eLeFaF~ 117 (176)
....+++-|+.+|+|.. +.++-|+-..+
T Consensus 170 ~~~a~g~~v~~lD~D~~-~~~~~l~~~~~ 197 (625)
T 2z86_A 170 LRAAKYNYVAILDCDMA-PNPLWVQSYME 197 (625)
T ss_dssp HHHCCSSEEEEECTTEE-ECTTHHHHHHH
T ss_pred HHhCCcCEEEEECCCCC-CCHHHHHHHHH
Confidence 34558999999999996 78777765544
No 7
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=92.25 E-value=0.046 Score=49.55 Aligned_cols=100 Identities=12% Similarity=0.109 Sum_probs=63.8
Q ss_pred CCCceEEEEeccCCc-hHHHHHHHHHhc-CC-Cc-ceEEEEecCCCCCCCC-CC---CCCCCCCceEEEeCCCcc--ccc
Q psy979 15 STVRKYIPHDCIDRV-HSLFLLMEQLAL-VP-SV-SKILVIWNNQAKSPPP-VS---KWPKISKSWTIIRTDENK--LSK 84 (176)
Q Consensus 15 ~~~r~~i~i~Ty~R~-~~L~~~l~~~~~-~p-~l-~~IvVvWn~~~~~pP~-~~---~~p~~~vpV~v~~~~~ns--Lnn 84 (176)
..++++|+|.||++. +.|.+.|+.+.+ .+ .+ .+|+||=++.. .+. .. .+..-...|++++.++|. -..
T Consensus 110 ~~P~vSVIIp~yNe~~~~L~~~L~Sll~qt~~~~~~EIIVVDDgS~--D~tl~~~l~~~~~~~~~v~vi~~~~n~G~~~A 187 (570)
T 2d7i_A 110 TLPNTSIIIPFHNEGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSD--REHLKKPLEDYMALFPSVRILRTKKREGLIRT 187 (570)
T ss_dssp SCCCEEEEEEESSCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCC--CGGGTHHHHHHHTTSTTEEEEECSSCCCHHHH
T ss_pred CCCCeEEEEEECCCCHHHHHHHHHHHHhcCCccCcEEEEEEECCCC--cHHHHHHHHHHHHhCCeEEEEECCCCCCHHHH
Confidence 356899999999998 999999999853 32 22 38988877642 222 10 011111358888876552 222
Q ss_pred ccCCCCCCCcceEEEeeCCCCCCChHHHHHHhh
Q psy979 85 RFYPYAEIETEAVLSIDDDITMLTPDELEFGFE 117 (176)
Q Consensus 85 RF~P~~~I~T~AVlslDDDv~~l~~~eLeFaF~ 117 (176)
|-.-...-+++-|+.+|+|.. +.++-|+-..+
T Consensus 188 ~N~G~~~A~gd~i~fLD~D~~-~~p~~L~~ll~ 219 (570)
T 2d7i_A 188 RMLGASVATGDVITFLDSHCE-ANVNWLPPLLD 219 (570)
T ss_dssp HHHHHHHCCSSEEEECCSSEE-ECTTCSHHHHH
T ss_pred HHHHHHhcCCCEEEEEcCCcc-ccccHHHHHHH
Confidence 322233457899999999996 67765554433
No 8
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=91.64 E-value=0.039 Score=51.48 Aligned_cols=100 Identities=17% Similarity=0.218 Sum_probs=65.7
Q ss_pred CCCceEEEEeccCCchHHHHHHHHHhcCC----CcceEEEEecCCCCCCCCCCCCC----CCCCceEEEeCCCcc-c---
Q psy979 15 STVRKYIPHDCIDRVHSLFLLMEQLALVP----SVSKILVIWNNQAKSPPPVSKWP----KISKSWTIIRTDENK-L--- 82 (176)
Q Consensus 15 ~~~r~~i~i~Ty~R~~~L~~~l~~~~~~p----~l~~IvVvWn~~~~~pP~~~~~p----~~~vpV~v~~~~~ns-L--- 82 (176)
..++++|+|.||+|.+.|.+.|.++.+.. ...+|+||=|+.. .+....... .....|+++..+ |. .
T Consensus 178 ~~pkVSVVIptYN~~~~L~~~L~SL~~qt~~~~~~~EIIVVDNgSt-D~s~~~~~~e~~~~~~~~I~vI~~~-N~G~a~a 255 (657)
T 4fix_A 178 GTANIAVGIPTFNRPADCVNALRELTADPLVDQVIGAVIVPDQGER-KVRDHPDFPAAAARLGSRLSIHDQP-NLGGSGG 255 (657)
T ss_dssp SCCCEEEECCBSSCHHHHHHHHHHHTTSHHHHTTEEEEEEEECSSS-CGGGSTTHHHHHHHHGGGEEEEECC-CCHHHHH
T ss_pred CCCeEEEEEEecCCHHHHHHHHHHHHcCccccCCCCEEEEEECcCC-CccchHHHHHHHHhcCCCEEEEECC-CCCHHHH
Confidence 35789999999999999999999997654 4558999988752 221111110 012468888866 42 1
Q ss_pred ccccCCC--CCCCcceEEEeeCCCCCCChHHHHHHhh
Q psy979 83 SKRFYPY--AEIETEAVLSIDDDITMLTPDELEFGFE 117 (176)
Q Consensus 83 nnRF~P~--~~I~T~AVlslDDDv~~l~~~eLeFaF~ 117 (176)
+|+=.-. .+-..|-|+.+|||+. +.++-|+-..+
T Consensus 256 ~N~Gl~~A~g~~~~dyIlfLD~D~~-~~pd~L~~ll~ 291 (657)
T 4fix_A 256 YSRVMYEALKNTDCQQILFMDDDIR-LEPDSILRVLA 291 (657)
T ss_dssp HHHHHHHHHHHCCCSEEEEECSSEE-ECTHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCEEEEECCCCc-cChhHHHHHHH
Confidence 2221111 0115689999999996 78887777655
No 9
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=80.84 E-value=0.76 Score=41.23 Aligned_cols=99 Identities=10% Similarity=0.006 Sum_probs=58.8
Q ss_pred CCCceEEEEeccCCchHHHHHHHHHhcCCCcc-eEEEEecCCCCCCCCCC---CCCCCCCceEEEeCCCccc-ccccCCC
Q psy979 15 STVRKYIPHDCIDRVHSLFLLMEQLALVPSVS-KILVIWNNQAKSPPPVS---KWPKISKSWTIIRTDENKL-SKRFYPY 89 (176)
Q Consensus 15 ~~~r~~i~i~Ty~R~~~L~~~l~~~~~~p~l~-~IvVvWn~~~~~pP~~~---~~p~~~vpV~v~~~~~nsL-nnRF~P~ 89 (176)
...+++|+|.||++.+.|.+.|+++.+-.+-. +|+||=++. .. .... .+..-...|+++..+.... .+|-.-.
T Consensus 373 ~~~~vsiii~~yn~~~~l~~~l~s~~~q~~~~~eiivvdd~S-~d-~t~~~~~~~~~~~~~i~~~~~~n~G~~~a~n~g~ 450 (625)
T 2z86_A 373 RVPLVSIYIPAYNCSKYIVRCVESALNQTITDLEVCICDDGS-TD-DTLRILQEHYANHPRVRFISQKNKGIGSASNTAV 450 (625)
T ss_dssp SSCSEEEEEEESSCTTTHHHHHHHHHSSSCCSEEEEEEEESC-SS-SHHHHHHHHHTTCTTEEEEEECCCCHHHHHHHHH
T ss_pred cCCeEEEEEeCCCCHHHHHHHHHHHHhCcCCCeEEEEEECcC-Ch-hHHHHHHHHHhhCCcEEEEeCCCCCHHHHHHHHH
Confidence 34689999999999999999999985433323 666664442 21 1110 0101122477775332111 1121122
Q ss_pred CCCCcceEEEeeCCCCCCChHHHHHHh
Q psy979 90 AEIETEAVLSIDDDITMLTPDELEFGF 116 (176)
Q Consensus 90 ~~I~T~AVlslDDDv~~l~~~eLeFaF 116 (176)
..-+.+-|+.+|+|.. +.++-|+-..
T Consensus 451 ~~a~g~~i~~ld~D~~-~~~~~l~~~~ 476 (625)
T 2z86_A 451 RLCRGFYIGQLDSDDF-LEPDAVELCL 476 (625)
T ss_dssp HHCCSSEEEECCTTCE-ECTTHHHHHH
T ss_pred HhcCCCEEEEECCCcc-cChhHHHHHH
Confidence 3457899999999986 7887776543
No 10
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=80.11 E-value=0.35 Score=44.83 Aligned_cols=98 Identities=17% Similarity=0.159 Sum_probs=0.0
Q ss_pred CceEEEEeccCCchHHHHHHHHHhcCCC-cceEEEEecCCCCCCCCCC---CCCC-CCCceEEEeCCCcc--cccccCCC
Q psy979 17 VRKYIPHDCIDRVHSLFLLMEQLALVPS-VSKILVIWNNQAKSPPPVS---KWPK-ISKSWTIIRTDENK--LSKRFYPY 89 (176)
Q Consensus 17 ~r~~i~i~Ty~R~~~L~~~l~~~~~~p~-l~~IvVvWn~~~~~pP~~~---~~p~-~~vpV~v~~~~~ns--LnnRF~P~ 89 (176)
.+++|+|.||++.+.|.+.|+++.+-.+ --+|+||=++. .. .... .+-. ....|+++..+.|. -.+|-.-.
T Consensus 2 p~vSVIIp~yN~~~~L~~~L~Sll~Qt~~~~EIIVVDDgS-tD-~t~~il~~~~~~~~~~i~~i~~~~n~G~~~arN~gi 79 (729)
T 3l7i_A 2 NKLTIIVTYYNAEEYITGCLESIKQQRTQDFNLIIVNDGS-TD-QSKKLMDEAIKDYDKNIRFIDLDENSGHAHARNIAL 79 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceEEEEEEcCCCHHHHHHHHHHHHhCCCCCeEEEEEECCC-CC-cHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999999999843322 23677765553 21 1111 1111 13457777765442 24444445
Q ss_pred CCCCcceEEEeeCCCCCCChHHHHHHhh
Q psy979 90 AEIETEAVLSIDDDITMLTPDELEFGFE 117 (176)
Q Consensus 90 ~~I~T~AVlslDDDv~~l~~~eLeFaF~ 117 (176)
..-+++-|+.+|+|.. +.++-|+...+
T Consensus 80 ~~A~gdyI~flD~Dd~-~~p~~l~~l~~ 106 (729)
T 3l7i_A 80 EEVETPYFMFLDADDE-LASYAITFYLE 106 (729)
T ss_dssp ----------------------------
T ss_pred HhccCCEEEEECCCCC-CChhHHHHHHH
Confidence 6678999999999986 67776665544
No 11
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...
Probab=78.56 E-value=2.5 Score=35.20 Aligned_cols=79 Identities=16% Similarity=0.073 Sum_probs=49.0
Q ss_pred CCCceEEEEeccCCchHHHHHHHHHh----cCCCcceEEEEecCCCCCCCCCCCCCCCCCceEEEeCCCcccccccC-CC
Q psy979 15 STVRKYIPHDCIDRVHSLFLLMEQLA----LVPSVSKILVIWNNQAKSPPPVSKWPKISKSWTIIRTDENKLSKRFY-PY 89 (176)
Q Consensus 15 ~~~r~~i~i~Ty~R~~~L~~~l~~~~----~~p~l~~IvVvWn~~~~~pP~~~~~p~~~vpV~v~~~~~nsLnnRF~-P~ 89 (176)
+..+++|+|.||+|.+.|.+.|+++. +...--+|+||=+..+ ..+ + ....+|.=|. -.
T Consensus 63 ~~~~VSIIIP~yN~~~~L~~~L~sl~~~l~q~~~~~EIiVVdds~d------~~f---~--------~a~a~N~G~~~al 125 (287)
T 2fy7_A 63 SPHKVAIIIPFRNRQEHLKYWLYYLHPVLQRQQLDYGIYVINQAGD------TIF---N--------RAKLLNVGFQEAL 125 (287)
T ss_dssp CSCEEEEEEEESSCHHHHHHHHHHHHHHHHHTTCEEEEEEEEECSS------SCC---C--------HHHHHHHHHHHHH
T ss_pred cCCcEEEEEeeCCCHHHHHHHHHHHHHHHHHhcCCceEEEEEeCCC------Ccc---c--------hhhhhhhHHHHHH
Confidence 35789999999999999999999986 3333347777755221 011 0 0001221110 00
Q ss_pred CCCCcceEEEeeCCCCCCChHH
Q psy979 90 AEIETEAVLSIDDDITMLTPDE 111 (176)
Q Consensus 90 ~~I~T~AVlslDDDv~~l~~~e 111 (176)
..-+.+-|+.+|+|.. +.++.
T Consensus 126 ~~A~gd~i~flD~D~i-~~~d~ 146 (287)
T 2fy7_A 126 KDYDYTCFVFSDVDLI-PMNDH 146 (287)
T ss_dssp HHSCCCEEEEECTTEE-ESBTT
T ss_pred HhCCCCEEEEECCCcc-cCCCc
Confidence 2336799999999996 66664
No 12
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=74.38 E-value=4.1 Score=33.67 Aligned_cols=100 Identities=8% Similarity=0.048 Sum_probs=56.6
Q ss_pred CCCceEEEEeccCCchHHHHHHHHHhcC--CCcceEEEEecCCCCCCCCCCCCCCCCCce----EEEe-CCCcc--cccc
Q psy979 15 STVRKYIPHDCIDRVHSLFLLMEQLALV--PSVSKILVIWNNQAKSPPPVSKWPKISKSW----TIIR-TDENK--LSKR 85 (176)
Q Consensus 15 ~~~r~~i~i~Ty~R~~~L~~~l~~~~~~--p~l~~IvVvWn~~~~~pP~~~~~p~~~vpV----~v~~-~~~ns--LnnR 85 (176)
+..+++|+|.||++.+.|.+.|+++.+. +..-+|+||=++. . .......-.....+ +++. .+.|. -.++
T Consensus 46 ~~~~vSViIp~yN~~~~l~~~l~sl~~q~~~~~~eiivVDdgS-~-D~t~~~~~~~~~~~~~~~~~~~~~~~n~G~~~a~ 123 (329)
T 3ckj_A 46 AGRTISVVLPALDEEDTIGSVIDSISPLVDGLVDELIVLDSGS-T-DDTEIRAVAAGARVVSREQALPEVPIRPGKGEAL 123 (329)
T ss_dssp TTCCEEEEEEESSCTTTHHHHHHHHGGGBTTTBSEEEEEECSC-C-SSHHHHHHHTTCEEEEHHHHCTTSCCCCSHHHHH
T ss_pred cCCcEEEEEeeCCCHHHHHHHHHHHHHhhCCCCcEEEEEeCCC-C-chHHHHHHHhhhhhccceeeeccCCCCCCHHHHH
Confidence 4578999999999999999999998643 4456888875542 1 11100000111111 1111 22221 1112
Q ss_pred cCCCCCCCcceEEEeeCCCCCCChHHHHHHh
Q psy979 86 FYPYAEIETEAVLSIDDDITMLTPDELEFGF 116 (176)
Q Consensus 86 F~P~~~I~T~AVlslDDDv~~l~~~eLeFaF 116 (176)
-.-...-+++-|+.+|+|...+.++.|+...
T Consensus 124 n~g~~~a~gd~i~~lD~D~~~~~p~~l~~l~ 154 (329)
T 3ckj_A 124 WRSLAASRGDIVVFVDSDLINPHPMFVPWLV 154 (329)
T ss_dssp HHHHHHCCCSEEEECCTTEESCCTTHHHHHH
T ss_pred HHHHHhCCCCEEEEECCCCCCcChHHHHHHH
Confidence 1122345789999999998424666665543
No 13
>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A*
Probab=67.77 E-value=5 Score=34.71 Aligned_cols=102 Identities=10% Similarity=0.037 Sum_probs=60.6
Q ss_pred hhcCCCceEEEEeccCCchHHHHHHHHHhc----CCCcceEEEEecCCCCCCCCCCCCCCCCCceEEEeC-------CCc
Q psy979 12 IAGSTVRKYIPHDCIDRVHSLFLLMEQLAL----VPSVSKILVIWNNQAKSPPPVSKWPKISKSWTIIRT-------DEN 80 (176)
Q Consensus 12 ~~~~~~r~~i~i~Ty~R~~~L~~~l~~~~~----~p~l~~IvVvWn~~~~~pP~~~~~p~~~vpV~v~~~-------~~n 80 (176)
.+....+++|+|.||+..+.|.+.|+.+.+ .+.-.+|+||=++.. .......-... .+++.. +.|
T Consensus 89 ~~~~~p~vSVVIP~yNe~~~l~~~l~sl~~~l~~~~~~~EIIVVDDgSt--D~T~~i~~~~~--~~v~~~~~~~i~~~~n 164 (387)
T 3f1y_A 89 KRELGLTVSAVLPSRNVADTVGGIIDEIHALNERAPLIDQILVVDADSE--DGTAGVAASHG--AEVYSENELMSGYGDA 164 (387)
T ss_dssp HHHHTCCEEEEEEESSCTTTHHHHHHHHHHHHHHSCCCSEEEEEECSCS--SSHHHHHHHTT--CEEEEGGGTTGGGCSC
T ss_pred hhcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHhcCCCCeEEEEEcCcCC--ccHHHHHHHhC--chhcccceeEecCCcc
Confidence 344568999999999999999999888743 455679999987741 11110011111 233221 122
Q ss_pred c--cccccCCCCCCCcceEEEeeCCCCCCChHHHHHHhh
Q psy979 81 K--LSKRFYPYAEIETEAVLSIDDDITMLTPDELEFGFE 117 (176)
Q Consensus 81 s--LnnRF~P~~~I~T~AVlslDDDv~~l~~~eLeFaF~ 117 (176)
. -.++-.-...-..+.|+.+|.|...+.++.|+...+
T Consensus 165 ~G~g~A~n~G~~~A~gd~i~~lDaD~~~~~p~~L~~l~~ 203 (387)
T 3f1y_A 165 HGKGDAMWRALSVTRGDLVLYIDADTRDFRPQLAYGVLG 203 (387)
T ss_dssp CSHHHHHHHHTTTCCSSEEEECCTTCSSCCTHHHHTTHH
T ss_pred CCHHHHHHHHHHhcCCCEEEEEcCCCCcCCHHHHHHHHH
Confidence 1 112222223457899999999985247777665443
No 14
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=61.03 E-value=2.8 Score=39.57 Aligned_cols=101 Identities=10% Similarity=-0.010 Sum_probs=60.6
Q ss_pred cCCCceEEEEeccCCchH-HHHHHHHHhcCCCcc---eEEEEecCCCCCCCCCCC------------CC---C--CCCce
Q psy979 14 GSTVRKYIPHDCIDRVHS-LFLLMEQLALVPSVS---KILVIWNNQAKSPPPVSK------------WP---K--ISKSW 72 (176)
Q Consensus 14 ~~~~r~~i~i~Ty~R~~~-L~~~l~~~~~~p~l~---~IvVvWn~~~~~pP~~~~------------~p---~--~~vpV 72 (176)
...++++|+|.||+.... |.+.|+.+.+..+-+ +|+||=++. .. ..... .+ . -..++
T Consensus 137 ~~~P~VSViIPtyNe~~~lL~~~L~Sl~~q~yp~~~~eIiVVDDgS-tD-~T~~~~d~~i~~~~~~~~~~l~~~~~~~~v 214 (802)
T 4hg6_A 137 EELPTVDILVPSYNEPADMLSVTLAAAKNMIYPARLRTVVLCDDGG-TD-QRCMSPDPELAQKAQERRRELQQLCRELGV 214 (802)
T ss_dssp TTCCCEEEEEECTTCCHHHHHHHHHHHHTSSCCTTCCEEEEESTTC-HH-HHHTCSSHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cCCCcEEEEEEECCCCHHHHHHHHHHHHhccCCCCcEEEEEEECCC-Cc-cccccCCHHHHHHHHhhhHHHHHHHHhcCc
Confidence 345689999999998864 599999997655443 677775442 11 11000 00 0 01245
Q ss_pred EEEeCCCc---ccccccCCCCCCCcceEEEeeCCCCCCChHHHHHHhh
Q psy979 73 TIIRTDEN---KLSKRFYPYAEIETEAVLSIDDDITMLTPDELEFGFE 117 (176)
Q Consensus 73 ~v~~~~~n---sLnnRF~P~~~I~T~AVlslDDDv~~l~~~eLeFaF~ 117 (176)
+++..++| +-.++-.-....+.|-|+.+|+|.. +.++.|+..-.
T Consensus 215 ~~i~~~~~~~GKa~alN~gl~~a~gd~Il~lDaD~~-~~pd~L~~lv~ 261 (802)
T 4hg6_A 215 VYSTRERNEHAKAGNMSAALERLKGELVVVFDADHV-PSRDFLARTVG 261 (802)
T ss_dssp EEEECSSCCSHHHHHHHHHHHHCCCSEEEECCTTEE-ECTTHHHHHHH
T ss_pred EEEEecCCCCcchHHHHHHHHhcCCCEEEEECCCCC-cChHHHHHHHH
Confidence 55554443 1222222234568899999999996 78887766544
No 15
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=48.91 E-value=11 Score=32.33 Aligned_cols=91 Identities=19% Similarity=0.230 Sum_probs=50.1
Q ss_pred eEEEEeccCCchHHHHHHHHHhcC-CCcc-eEEEEecCCCCCCCCCCCCCCCCCceEEEeCCCcc---------------
Q psy979 19 KYIPHDCIDRVHSLFLLMEQLALV-PSVS-KILVIWNNQAKSPPPVSKWPKISKSWTIIRTDENK--------------- 81 (176)
Q Consensus 19 ~~i~i~Ty~R~~~L~~~l~~~~~~-p~l~-~IvVvWn~~~~~pP~~~~~p~~~vpV~v~~~~~ns--------------- 81 (176)
..|++.||+|++ |++.|+.+.+. |... .-+||=.+...... ...--.+..+|..+.++..+
T Consensus 4 ~pViI~~yNRp~-l~~~L~sL~~~~p~~~~~~iivsdDgs~~~~-~~vi~~~~~~I~~~~~~d~~~~~~~~~N~g~~~y~ 81 (343)
T 1fo8_A 4 IPILVIACDRST-VRRCLDKLLHYRPSAELFPIIVSQDCGHEET-AQVIASYGSAVTHIRQPDLSNIAVQPDHRKFQGYY 81 (343)
T ss_dssp CCEEEEESSCTT-HHHHHHHHHHHCSCTTTSCEEEEECTTCHHH-HHHHHTTGGGSEEEECSCCCCCCCCTTCGGGHHHH
T ss_pred ccEEEEECCcHH-HHHHHHHHHhcCCCcCCcEEEEEECCCCHHH-HHHHHHcCCceEEEEcCCccccccchhhcCcccch
Confidence 459999999999 99999998654 3332 22333333221110 00001123345544322111
Q ss_pred ---------cccccCCCCCCCcceEEEeeCCCCCCChHHHHHH
Q psy979 82 ---------LSKRFYPYAEIETEAVLSIDDDITMLTPDELEFG 115 (176)
Q Consensus 82 ---------LnnRF~P~~~I~T~AVlslDDDv~~l~~~eLeFa 115 (176)
+|.=| ...+-+.|..+|||.. ++++=++|-
T Consensus 82 ~ia~h~~~al~~vf---~~~~~~~vIiLEDDl~-~spdF~~y~ 120 (343)
T 1fo8_A 82 KIARHYRWALGQIF---HNFNYPAAVVVEDDLE-VAPDFFEYF 120 (343)
T ss_dssp HHHHHHHHHHHHHH---TTSCCSEEEEEETTEE-ECTTHHHHH
T ss_pred hHhHHHHHHHHHHH---HhccCCEEEEEcCCCe-ECHHHHHHH
Confidence 11111 2235789999999996 888766664
No 16
>1hcw_A BBA1; growth response protein, de novo protein design, supersecondary motif; HET: PYA; NMR {} SCOP: k.14.1.1 PDB: 1t8j_A*
Probab=36.91 E-value=6.8 Score=21.39 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=17.8
Q ss_pred eEEEEeccCCchHHHHHHHHHhc
Q psy979 19 KYIPHDCIDRVHSLFLLMEQLAL 41 (176)
Q Consensus 19 ~~i~i~Ty~R~~~L~~~l~~~~~ 41 (176)
+|+.-.||.|++.|-++++..++
T Consensus 2 ytvps~tfsrsdelakllrlhag 24 (26)
T 1hcw_A 2 YTVPSXTFSRSDELAKLLRLHAG 24 (26)
T ss_dssp CCSSSCCCSSSHHHHHHHHHCCC
T ss_pred cccCcccccccHHHHHHHHHhcc
Confidence 34455789999999999987654
No 17
>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon, glycosyl transferase, rossmann F sulphur SAD, transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*
Probab=27.38 E-value=63 Score=25.17 Aligned_cols=38 Identities=16% Similarity=0.111 Sum_probs=26.6
Q ss_pred CCceEEEEeccCCchHHHHHHHHHhcC---CCcceEEEEecC
Q psy979 16 TVRKYIPHDCIDRVHSLFLLMEQLALV---PSVSKILVIWNN 54 (176)
Q Consensus 16 ~~r~~i~i~Ty~R~~~L~~~l~~~~~~---p~l~~IvVvWn~ 54 (176)
...++|+ .+|++.+.|.+.|+++.++ +.--+|+||=|+
T Consensus 15 ~~~iSII-~~yN~~~~l~~~l~sl~~sl~~q~~~EiIVVDn~ 55 (249)
T 2nxv_A 15 TLMFSVC-SLVRDQAKYDRLLESFERFGFTPDKAEFLAADNR 55 (249)
T ss_dssp CCSEEEE-EEESCHHHHHHHHHHHHHTTCCTTTEEEEEEECT
T ss_pred cceEEEE-EeeCCHHHHHHHHHHHHHhccCCCcEEEEEEECC
Confidence 4567775 5799999999999977431 222688888444
No 18
>1jb0_X Photosystem I subunit PSAX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.20.1 PDB: 3pcq_X*
Probab=25.91 E-value=29 Score=20.46 Aligned_cols=10 Identities=60% Similarity=0.893 Sum_probs=7.7
Q ss_pred HHHHHHHHHh
Q psy979 144 IAMNFLVAHI 153 (176)
Q Consensus 144 IaMNflVa~~ 153 (176)
+++|||||..
T Consensus 20 LaINflVAay 29 (35)
T 1jb0_X 20 LAINFLVAAY 29 (35)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5789999853
No 19
>1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A {Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 3n9w_A 1h3m_A
Probab=20.85 E-value=1.4e+02 Score=22.62 Aligned_cols=86 Identities=14% Similarity=0.135 Sum_probs=50.4
Q ss_pred CchHHHHHHHHHhcCCCcceEEEEecCCCCCCCCCCCCCCCCC-ceEEEeCCCc---ccccccCCCCCC-CcceEEEeeC
Q psy979 28 RVHSLFLLMEQLALVPSVSKILVIWNNQAKSPPPVSKWPKISK-SWTIIRTDEN---KLSKRFYPYAEI-ETEAVLSIDD 102 (176)
Q Consensus 28 R~~~L~~~l~~~~~~p~l~~IvVvWn~~~~~pP~~~~~p~~~v-pV~v~~~~~n---sLnnRF~P~~~I-~T~AVlslDD 102 (176)
=..+|..+++.+.+++.+.+|+|+=+....... .....+. .|+++..... ++..= ...+ ..+.||.++=
T Consensus 34 g~pll~~~i~~l~~~~~~~~ivvv~~~~~~~~~---~~~~~~~~~v~~~~~~~g~~~~i~~a---l~~~~~~~~~lv~~~ 107 (236)
T 1i52_A 34 NQTILEHSVHALLAHPRVKRVVIAISPGDSRFA---QLPLANHPQITVVDGGDERADSVLAG---LKAAGDAQWVLVHDA 107 (236)
T ss_dssp TEEHHHHHHHHHHTSTTEEEEEEEECTTCCSGG---GSGGGGCTTEEEEECCSSHHHHHHHH---HHTSTTCSEEEECCT
T ss_pred CEEHHHHHHHHHHhCCCCCeEEEEeCccHHHHH---HHHhcCCCCEEEECCCCCHHHHHHHH---HHhcCCCCEEEEEcC
Confidence 346888899999999989999998765321111 1111122 4655543221 11110 1122 3688999998
Q ss_pred CCCCCChHHHHHHhhhc
Q psy979 103 DITMLTPDELEFGFEYW 119 (176)
Q Consensus 103 Dv~~l~~~eLeFaF~~y 119 (176)
|...++.+.++...+.+
T Consensus 108 D~P~~~~~~i~~l~~~~ 124 (236)
T 1i52_A 108 ARPCLHQDDLARLLALS 124 (236)
T ss_dssp TCTTCCHHHHHHHHGGG
T ss_pred ccccCCHHHHHHHHHHH
Confidence 87546777787766643
Done!