Query psy979
Match_columns 176
No_of_seqs 107 out of 263
Neff 5.5
Searched_HMMs 13730
Date Fri Aug 16 19:48:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy979.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/979hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1omza_ c.68.1.15 (A:) Alpha-1 99.5 2.3E-13 1.7E-17 102.3 12.2 147 16-163 2-204 (265)
2 d1xhba2 c.68.1.17 (A:95-422) P 94.6 0.011 7.8E-07 46.8 3.5 100 16-117 21-130 (328)
3 d1qg8a_ c.68.1.1 (A:) Spore co 93.7 0.013 9.4E-07 44.3 2.1 97 17-117 1-111 (255)
4 d1y6ia1 a.118.1.22 (A:1-82) Mg 49.8 1.7 0.00012 29.0 0.1 33 133-165 26-58 (82)
5 d1fo8a_ c.68.1.10 (A:) N-acety 49.1 2.5 0.00018 34.7 1.1 30 21-51 6-38 (343)
6 d1jb0x_ f.23.20.1 (X:) Subunit 30.0 11 0.00078 19.8 1.3 10 144-153 14-23 (29)
7 d2i5ea1 c.68.1.21 (A:1-208) Hy 28.3 42 0.003 24.3 5.1 77 31-117 32-108 (208)
8 d1i52a_ c.68.1.13 (A:) 4-dipho 22.2 64 0.0047 22.3 5.1 84 30-117 32-118 (225)
9 d1z3xa1 a.118.1.22 (A:1-87) GU 17.9 31 0.0023 22.6 2.1 33 133-165 29-63 (87)
10 d2bo4a1 c.68.1.18 (A:2-382) Ma 17.3 64 0.0046 26.0 4.4 91 21-117 3-115 (381)
No 1
>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.47 E-value=2.3e-13 Score=102.28 Aligned_cols=147 Identities=29% Similarity=0.504 Sum_probs=110.3
Q ss_pred CCceEEEEeccCCchHHHHHHHHHhcCCCcceEEEEecCCCCCCCCC--CCCCCCCCceEEEeCCCcccccccCCCCCCC
Q psy979 16 TVRKYIPHDCIDRVHSLFLLMEQLALVPSVSKILVIWNNQAKSPPPV--SKWPKISKSWTIIRTDENKLSKRFYPYAEIE 93 (176)
Q Consensus 16 ~~r~~i~i~Ty~R~~~L~~~l~~~~~~p~l~~IvVvWn~~~~~pP~~--~~~p~~~vpV~v~~~~~nsLnnRF~P~~~I~ 93 (176)
=+++||+|.||+|.+.|.+.|+++.+.++..+|+||||+.+...+.. ..+......+.+.....+...+|.......+
T Consensus 2 ~~~~tvii~tyn~~~~l~~~l~sl~~q~~~~~~iiV~d~~sd~~~~~i~~~~~~~~~~~~~~~~~~g~~~a~n~~~~~a~ 81 (265)
T d1omza_ 2 LDSFTLIMQTYNRTDLLLRLLNHYQAVPSLHKVIVVWNNVGEKGPEELWNSLGPHPIPVIFKPQTANKMRNRLQVFPEVE 81 (265)
T ss_dssp TTCEEEEEEESSCHHHHHHHHHHHTTSTTEEEEEEEECCTTCCCTHHHHHHTCCCSSCEEEEECSSCCGGGGGSCCTTCC
T ss_pred CCcEEEEEEcCCCHHHHHHHHHHHHcCCCcCeEEEEECCCCCccHHHHHHHhcccceEEEEecCCCCchhhhhhhHHhCC
Confidence 37899999999999999999999999999999999999964322210 1122333445555555667899999999999
Q ss_pred cceEEEeeCCCCCCChHHHHHHhhhcc------------------------c-----------------------ccc--
Q psy979 94 TEAVLSIDDDITMLTPDELEFGFEYWN------------------------Y-----------------------MYT-- 124 (176)
Q Consensus 94 T~AVlslDDDv~~l~~~eLeFaF~~y~------------------------~-----------------------~Yt-- 124 (176)
+|.|+.+|||.. +.++.|+...+.+. . .+.
T Consensus 82 ge~i~~lD~D~~-~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 160 (265)
T d1omza_ 82 TNAVLMVDDDTL-ISAQDLVFAFSIWQQFPDQIIGFVPRKHVSTSSGIYSYGGFELQTPGPGNGDQYSMVLIGASFFNSK 160 (265)
T ss_dssp SSEEEEECTTEE-ECHHHHHHHHHHHTTSTTSEEESCEEEEEEEETTEEEEECTTSCCCSSSSSCCBSEECTTEEEEETH
T ss_pred cCEEEEeCcccC-CCHHHHHHHHHHHHhCCCcceecccccccccCCcccccccccccccccccccccceeccceeEecHH
Confidence 999999999996 79999998877110 0 000
Q ss_pred -----ccCcHhHHHHhcCCCChhHHHHHHHHHHhhCCCCeEeee
Q psy979 125 -----AHMPTPIRTYVDSHMNCEDIAMNFLVAHITAKAPFIHSI 163 (176)
Q Consensus 125 -----~~lp~~ir~~VD~~~NCEDIaMNflVa~~T~~pPi~V~~ 163 (176)
.........+.++...|+|+.|.+......+++.+....
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 204 (265)
T d1omza_ 161 YLELFQKQPAAVHALIDETQNCDDIAMNFLVTRHTGKPSGIFVK 204 (265)
T ss_dssp HHHHHHTSCHHHHHHHHHHTCCHHHHHHHHHHHHHSSCSEEEEC
T ss_pred HHHHHhhhHHHHhhhhhhhcchHHHHHHHHHHHhcCCceeeeec
Confidence 111234556778889999999999999999998865443
No 2
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=94.56 E-value=0.011 Score=46.78 Aligned_cols=100 Identities=12% Similarity=0.096 Sum_probs=64.9
Q ss_pred CCceEEEEeccCCc-hHHHHHHHHHh-cC-CC-cceEEEEecCCCCCCCCCC---CC-CCCCCceEEEeCCCcc-c-ccc
Q psy979 16 TVRKYIPHDCIDRV-HSLFLLMEQLA-LV-PS-VSKILVIWNNQAKSPPPVS---KW-PKISKSWTIIRTDENK-L-SKR 85 (176)
Q Consensus 16 ~~r~~i~i~Ty~R~-~~L~~~l~~~~-~~-p~-l~~IvVvWn~~~~~pP~~~---~~-p~~~vpV~v~~~~~ns-L-nnR 85 (176)
-+..||+|.||++. +.|.++|+.+. +. |. +.+|+||=++ +....... .+ .....+|++++.+.|. . ..|
T Consensus 21 ~P~vSIIIp~yNe~~~~l~~~l~Si~~qt~~~~~~EIIvVDdg-S~d~~~~~~l~~~~~~~~~~i~vi~~~~n~G~~~a~ 99 (328)
T d1xhba2 21 LPTTSVVIVFHNEAWSTLLRTVHSVINRSPRHMIEEIVLVDDA-SERDFLKRPLESYVKKLKVPVHVIRMEQRSGLIRAR 99 (328)
T ss_dssp CCCEEEEEEESSCCHHHHHHHHHHHHHSSCGGGEEEEEEEECS-CCCGGGTHHHHHHHHSSSSCEEEEECSSCCCHHHHH
T ss_pred CCCEEEEEeccCCcHHHHHHHHHHHHhcCCCCCCeEEEEEECC-CChhhHHHHHHHHHHhcCCCeEEEEecccccchHHH
Confidence 46899999999975 67999999874 44 33 3588877433 32221110 01 2235679999877663 2 233
Q ss_pred cCCCCCCCcceEEEeeCCCCCCChHHHHHHhh
Q psy979 86 FYPYAEIETEAVLSIDDDITMLTPDELEFGFE 117 (176)
Q Consensus 86 F~P~~~I~T~AVlslDDDv~~l~~~eLeFaF~ 117 (176)
=.-...-+++-|+.+|+|+. +.++-|+-..+
T Consensus 100 N~Gi~~a~gd~i~flD~D~~-~~p~~l~~l~~ 130 (328)
T d1xhba2 100 LKGAAVSRGQVITFLDAHCE-CTAGWLEPLLA 130 (328)
T ss_dssp HHHHHHCCSSEEEEEESSEE-ECTTCHHHHHH
T ss_pred HHHHHhhhcceeeecCcccc-cChhHHHHHHH
Confidence 33344668999999999996 78776765433
No 3
>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]}
Probab=93.67 E-value=0.013 Score=44.30 Aligned_cols=97 Identities=9% Similarity=0.031 Sum_probs=61.9
Q ss_pred CceEEEEeccCCchHHHHHHHHHhc--CCCcceEEEEecCCCCCCCCC--CCCCCCCCceEEEeCCCcccc---------
Q psy979 17 VRKYIPHDCIDRVHSLFLLMEQLAL--VPSVSKILVIWNNQAKSPPPV--SKWPKISKSWTIIRTDENKLS--------- 83 (176)
Q Consensus 17 ~r~~i~i~Ty~R~~~L~~~l~~~~~--~p~l~~IvVvWn~~~~~pP~~--~~~p~~~vpV~v~~~~~nsLn--------- 83 (176)
++.||+|.||++...|.+.|+.+.+ .+. -+|+||.++.. ..... ..+. -.-+|++...+.+...
T Consensus 1 P~vSiiip~yN~~~~l~~~l~Si~~Qt~~~-~eiivvdd~S~-d~t~~~l~~~~-~~~~i~~~~~~~~~~~~~~~~~g~~ 77 (255)
T d1qg8a_ 1 PKVSVIMTSYNKSDYVAKSISSILSQTFSD-FELFIMDDNSN-EETLNVIRPFL-NDNRVRFYQSDISGVKERTEKTRYA 77 (255)
T ss_dssp CCEEEEEEESSCTTTHHHHHHHHHTCSCCC-EEEEEEECSCC-HHHHHHHGGGG-GSTTEEEEECCCCSHHHHHSSCHHH
T ss_pred CEEEEEEecCCCHHHHHHHHHHHHhCCCCC-eEEEEEECCCC-ccHHHHHHHhh-hhcccccccccccccccccccchhc
Confidence 5789999999999999999999843 343 48999988742 11100 0111 1346888876533211
Q ss_pred -cccCCCCCCCcceEEEeeCCCCCCChHHHHHHhh
Q psy979 84 -KRFYPYAEIETEAVLSIDDDITMLTPDELEFGFE 117 (176)
Q Consensus 84 -nRF~P~~~I~T~AVlslDDDv~~l~~~eLeFaF~ 117 (176)
+|-+-....+++-|+.+|+|-. +.++-|+...+
T Consensus 78 ~a~N~gi~~a~g~~i~~lD~Dd~-~~p~~l~~~~~ 111 (255)
T d1qg8a_ 78 ALINQAIEMAEGEYITYATDDNI-YMPDRLLKMVR 111 (255)
T ss_dssp HHHHHHHHHCCCSEEEEEETTEE-ECTTHHHHHHH
T ss_pred ccccccccccccccccccccccc-cccchHHHHHH
Confidence 1112223457889999998875 67777776444
No 4
>d1y6ia1 a.118.1.22 (A:1-82) Mg-chelatase cofactor Gun4 {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=49.78 E-value=1.7 Score=28.96 Aligned_cols=33 Identities=9% Similarity=0.244 Sum_probs=25.0
Q ss_pred HHhcCCCChhHHHHHHHHHHhhCCCCeEeeeee
Q psy979 133 TYVDSHMNCEDIAMNFLVAHITAKAPFIHSIRA 165 (176)
Q Consensus 133 ~~VD~~~NCEDIaMNflVa~~T~~pPi~V~~r~ 165 (176)
+.++-.----+|+|.||-++....||-+|.+|.
T Consensus 26 qLa~~Ge~G~~vL~eFL~~~~~~~~~t~V~Gka 58 (82)
T d1y6ia1 26 ALAEMGEGGQGILLDYLAKNVPLEKPVLAVGNV 58 (82)
T ss_dssp HHHTSHHHHHHHHHHHHHHHCSCSSCCHHHHHH
T ss_pred HHHHccchhHHHHHHHHHHhCccCCCCcccchH
Confidence 334444445689999999998888998888875
No 5
>d1fo8a_ c.68.1.10 (A:) N-acetylglucosaminyltransferase I {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=49.07 E-value=2.5 Score=34.73 Aligned_cols=30 Identities=27% Similarity=0.231 Sum_probs=22.1
Q ss_pred EEEeccCCchHHHHHHHHHhc-CCCcce--EEEE
Q psy979 21 IPHDCIDRVHSLFLLMEQLAL-VPSVSK--ILVI 51 (176)
Q Consensus 21 i~i~Ty~R~~~L~~~l~~~~~-~p~l~~--IvVv 51 (176)
|++.+|+|+. |++.|+.+.+ .|+..+ |+|.
T Consensus 6 Vlv~a~NRP~-l~r~LesLlk~~p~~~~~~I~Vs 38 (343)
T d1fo8a_ 6 ILVIACDRST-VRRCLDKLLHYRPSAELFPIIVS 38 (343)
T ss_dssp EEEEESSCTT-HHHHHHHHHHHCSCTTTSCEEEE
T ss_pred EEEEEcCHHH-HHHHHHHHHhcCccccCccEEEE
Confidence 8899999985 8999999854 366543 5543
No 6
>d1jb0x_ f.23.20.1 (X:) Subunit PsaX of photosystem I reaction centre {Synechococcus elongatus [TaxId: 32046]}
Probab=29.99 E-value=11 Score=19.79 Aligned_cols=10 Identities=60% Similarity=0.893 Sum_probs=8.0
Q ss_pred HHHHHHHHHh
Q psy979 144 IAMNFLVAHI 153 (176)
Q Consensus 144 IaMNflVa~~ 153 (176)
+++||+|+..
T Consensus 14 lainflvaay 23 (29)
T d1jb0x_ 14 LAINFLVAAY 23 (29)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6789999864
No 7
>d2i5ea1 c.68.1.21 (A:1-208) Hypothetical protein MM2497 {Methanosarcina mazei [TaxId: 2209]}
Probab=28.30 E-value=42 Score=24.33 Aligned_cols=77 Identities=14% Similarity=0.225 Sum_probs=49.1
Q ss_pred HHHHHHHHHhcCCCcceEEEEecCCCCCCCCCCCCCCCCCceEEEeCCCcccccccCCCCCCCcceEEEeeCCCCCCChH
Q psy979 31 SLFLLMEQLALVPSVSKILVIWNNQAKSPPPVSKWPKISKSWTIIRTDENKLSKRFYPYAEIETEAVLSIDDDITMLTPD 110 (176)
Q Consensus 31 ~L~~~l~~~~~~p~l~~IvVvWn~~~~~pP~~~~~p~~~vpV~v~~~~~nsLnnRF~P~~~I~T~AVlslDDDv~~l~~~ 110 (176)
.|..+++.+++++ +.+|++++++... ...+. ... +... ...||+++.---.-.-+.|+.+==|+-.++.+
T Consensus 32 ml~~tl~~l~~~~-~~~v~~vs~~~~~----~~~~~--~~~--~~~~-~~~L~~al~~a~~~~~~~vliig~DlP~L~~~ 101 (208)
T d2i5ea1 32 MLNQVISSLKGAG-IEQVDILSPSVYG----LEEMT--EAR--VLLD-EKDLNEALNRYLKEAEEPVLIVMADLPLLSPE 101 (208)
T ss_dssp HHHHHHHHHHHTT-CSEEEEEESSCTT----CSSCC--SSE--EEEC-CSCHHHHHHHHHHHCCSCEEEECSCCTTCCHH
T ss_pred HHHHHHHHHHhCC-CcEEEEEcCcHHH----HHHhh--cCC--cccC-CCCHHHHHHHHHhcCCCCEEEecCCcCcCCHH
Confidence 5566677777654 6788888876421 11221 222 3333 34688876432222346788888888888999
Q ss_pred HHHHHhh
Q psy979 111 ELEFGFE 117 (176)
Q Consensus 111 eLeFaF~ 117 (176)
+|+-||+
T Consensus 102 ~l~~a~~ 108 (208)
T d2i5ea1 102 HIKEISS 108 (208)
T ss_dssp HHHHHTT
T ss_pred HHHHHHh
Confidence 9999998
No 8
>d1i52a_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Escherichia coli [TaxId: 562]}
Probab=22.25 E-value=64 Score=22.32 Aligned_cols=84 Identities=13% Similarity=0.052 Sum_probs=50.9
Q ss_pred hHHHHHHHHHhcCCCcceEEEEecCCCCCCCCCCCCCCCCCceEEEeCCCc---ccccccCCCCCCCcceEEEeeCCCCC
Q psy979 30 HSLFLLMEQLALVPSVSKILVIWNNQAKSPPPVSKWPKISKSWTIIRTDEN---KLSKRFYPYAEIETEAVLSIDDDITM 106 (176)
Q Consensus 30 ~~L~~~l~~~~~~p~l~~IvVvWn~~~~~pP~~~~~p~~~vpV~v~~~~~n---sLnnRF~P~~~I~T~AVlslDDDv~~ 106 (176)
++|...++.+.+++.+.+|+||=+.... -- ...+......+.+...... |+-+-+... -..+.|+..|-|...
T Consensus 32 plI~~~i~~~~~~~~i~~Iivv~~~~~~-~~-~~~~~~~~~~v~~~~~~~~~~~sv~~~~~~~--~~~~~vl~~~~~~p~ 107 (225)
T d1i52a_ 32 TILEHSVHALLAHPRVKRVVIAISPGDS-RF-AQLPLANHPQITVVDGGDERADSVLAGLKAA--GDAQWVLVHDAARPC 107 (225)
T ss_dssp EHHHHHHHHHHTSTTEEEEEEEECTTCC-SG-GGSGGGGCTTEEEEECCSSHHHHHHHHHHTS--TTCSEEEECCTTCTT
T ss_pred EHHHHHHHHHHhCccccccccccchhhh-hh-hhhhhccccccccccCCcchhHHHHhhhccc--CccceeeeeccCCCC
Confidence 5678888889999999999998665321 11 1112222345666654432 211111111 146789999998766
Q ss_pred CChHHHHHHhh
Q psy979 107 LTPDELEFGFE 117 (176)
Q Consensus 107 l~~~eLeFaF~ 117 (176)
++.+.++..+.
T Consensus 108 i~~~~~~~~~~ 118 (225)
T d1i52a_ 108 LHQDDLARLLA 118 (225)
T ss_dssp CCHHHHHHHHG
T ss_pred CCHHHHHHHHh
Confidence 77777777766
No 9
>d1z3xa1 a.118.1.22 (A:1-87) GUN4-like protein Ycf53, N-terminal domain {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=17.93 E-value=31 Score=22.64 Aligned_cols=33 Identities=15% Similarity=-0.008 Sum_probs=22.4
Q ss_pred HHhcCCCChhHHHHHHHHHHhhCC-C-CeEeeeee
Q psy979 133 TYVDSHMNCEDIAMNFLVAHITAK-A-PFIHSIRA 165 (176)
Q Consensus 133 ~~VD~~~NCEDIaMNflVa~~T~~-p-Pi~V~~r~ 165 (176)
+.++-.----+|+|.||..+.+.. . +-+|.+|.
T Consensus 29 qLa~~Ge~G~~vL~eFL~~~~~~~~~p~~~V~Gka 63 (87)
T d1z3xa1 29 TLSTAGTEGYHLLQEFLKDSATFSPPPAPWIRGQA 63 (87)
T ss_dssp HHTTSHHHHHHHHHHHHHHHTTCSSCCCHHHHHHH
T ss_pred HHHHccchhHHHHHHHHHHhcccCCCCcceehhHH
Confidence 334444445689999999999864 3 36777664
No 10
>d2bo4a1 c.68.1.18 (A:2-382) Mannosylglycerate synthase, MGS {Rhodothermus marinus [TaxId: 29549]}
Probab=17.26 E-value=64 Score=26.00 Aligned_cols=91 Identities=18% Similarity=0.165 Sum_probs=52.5
Q ss_pred EEEeccCCc-hHHHHHHHHHhcCCCcceEEEEecCCCCCCCCCCCCCC-----------CCCceEEEeCCCcc-------
Q psy979 21 IPHDCIDRV-HSLFLLMEQLALVPSVSKILVIWNNQAKSPPPVSKWPK-----------ISKSWTIIRTDENK------- 81 (176)
Q Consensus 21 i~i~Ty~R~-~~L~~~l~~~~~~p~l~~IvVvWn~~~~~pP~~~~~p~-----------~~vpV~v~~~~~ns------- 81 (176)
|+|.+|+-. +.+.++++..++.|.+++|+|+ ++.+. . .|.. .+..+......+-.
T Consensus 3 VVIP~~NEe~~il~~~v~~~a~~P~~~eIvVv-DdsSd----D-tt~~i~~~~~~~~~~~~~~v~~~~~~~l~~~~~GKG 76 (381)
T d2bo4a1 3 VVFPFKHEHPEVLLHNVRVAAAHPRVHEVLCI-GYERD----Q-TYEAVERAAPEISRATGTPVSVRLQERLGTLRPGKG 76 (381)
T ss_dssp EEEECCSSCHHHHHHHHHHHHHSTTCCEEEEE-ESSCC----H-HHHHHHHHHHHHHHHHSCCEEEEECCCCSSSSSSHH
T ss_pred EEEEcCCCcHHHHHHHHHHHHhCCCeeEEEEE-cCCCC----C-cHHHHHHHhhhhhccccccchhhhhcccccccCCCc
Confidence 788899865 6888888888999999999997 33211 1 1100 11223222211100
Q ss_pred --c-ccccCCCCCCCcceEEEeeCCCCCCChHHHHHHhh
Q psy979 82 --L-SKRFYPYAEIETEAVLSIDDDITMLTPDELEFGFE 117 (176)
Q Consensus 82 --L-nnRF~P~~~I~T~AVlslDDDv~~l~~~eLeFaF~ 117 (176)
+ .....-...-..|.|+.+|-|+.-..++.|.....
T Consensus 77 ~g~~~A~~~g~~~a~gd~lvflDADl~~~~pe~i~~L~~ 115 (381)
T d2bo4a1 77 DGMNTALRYFLEETQWERIHFYDADITSFGPDWITKAEE 115 (381)
T ss_dssp HHHHHHHHHHHHHCCCSEEEECCTTCSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCEEEEEcCCcCcCCHHHHHHHHH
Confidence 0 01111112357899999999984356776766655
Done!