RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy979
(176 letters)
>gnl|CDD|220155 pfam09258, Glyco_transf_64, Glycosyl transferase family 64 domain.
Members of this family catalyze the transfer reaction of
N-acetylglucosamine and N-acetylgalactosamine from the
respective UDP-sugars to the non-reducing end of
[glucuronic acid]beta 1-3[galactose]beta
1-O-naphthalenemethanol, an acceptor substrate analog of
the natural common linker of various
glycosylaminoglycans. They are also required for the
biosynthesis of heparan-sulphate.
Length = 244
Score = 154 bits (391), Expect = 2e-47
Identities = 69/180 (38%), Positives = 89/180 (49%), Gaps = 50/180 (27%)
Query: 27 DRVHSLFLLMEQLALVPSVSKILVIWNNQAKSPPPVSKWPKISKSWTIIRTDENKLSKRF 86
R+ L L+ A P ++KI+V+WNN K PP +SKWP + T+IRT N L+ RF
Sbjct: 10 SRIDLLRKLLNHYAGSPHLAKIVVLWNNP-KPPPELSKWPSPAVPLTVIRTKRNSLNNRF 68
Query: 87 YPYAEIETEAVLSIDDDITMLTPDELEFGFE----------------------------- 117
PY EIET+AVLS+DDDI +L+ DEL+F F
Sbjct: 69 LPYPEIETDAVLSLDDDI-LLSTDELDFAFSVWQSFPDRIVGFPPRSHFWDLSKGRWGYT 127
Query: 118 -------------------YWNYMYTAHMPTPIRTYVDSHMNCEDIAMNFLVAHITAKAP 158
Y+ Y+YT +P IR VD NCEDI MNFLVA++T K P
Sbjct: 128 SEWTNDYSMVLTGAAFYHRYYLYLYTHSLPKSIRDLVDETRNCEDILMNFLVANVTGKPP 187
>gnl|CDD|205017 pfam12682, Flavodoxin_4, Flavodoxin. This is a family of
flavodoxins. Flavodoxins are electron transfer proteins
that carry a molecule of non-covalently bound FMN.
Length = 156
Score = 27.1 bits (60), Expect = 3.4
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Query: 110 DELEFGFEYWNYMYTAHMPTPIRTYVDSH 138
D + GF W Y PT + T+++S+
Sbjct: 75 DVVFIGFPNWWY----IAPTIVNTFLESY 99
>gnl|CDD|184139 PRK13555, PRK13555, azoreductase; Provisional.
Length = 208
Score = 27.4 bits (60), Expect = 3.6
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 93 ETEAVLSIDDDIT-MLTPDELEFGFEYWNYMYTAHMPTPIRTYV 135
E +AV ++D + L D++ F F WN+ +P P+ TY+
Sbjct: 73 EEKAVATVDQYLNQFLEADKVVFAFPLWNFT----VPAPLITYI 112
>gnl|CDD|216392 pfam01255, Prenyltransf, Putative undecaprenyl diphosphate
synthase. Previously known as uncharacterized protein
family UPF0015, a single member of this family has been
identified as an undecaprenyl diphosphate synthase.
Length = 222
Score = 27.1 bits (61), Expect = 4.0
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 9/42 (21%)
Query: 95 EAVLSIDDDITMLTPDELEFGFEYWNYMYTAHMPTP---IRT 133
V + + +E Y+YT+ +P P IRT
Sbjct: 137 RDVADGKLSPEDIDEEVIE------KYLYTSDLPDPDLLIRT 172
>gnl|CDD|191455 pfam06124, DUF960, Staphylococcal protein of unknown function
(DUF960). This family consists of several hypothetical
proteins from several species of Staphylococcus. The
function of this family is unknown.
Length = 94
Score = 25.7 bits (57), Expect = 6.0
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 8/41 (19%)
Query: 73 TIIRTDENKLSKRFYPYAEIETEAVLSIDDDI--TMLTPDE 111
TII D FYP + V ID+D T+L PDE
Sbjct: 60 TIIEFDLANYFDPFYP------KKVYIIDNDGRETILLPDE 94
>gnl|CDD|177408 PHA02579, 7, baseplate wedge subunit; Provisional.
Length = 1030
Score = 27.0 bits (60), Expect = 6.4
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 7/64 (10%)
Query: 101 DDDITML-TPDELEFGFEYWNYMYTAHMPTPIRTYVDSHMNCED-----IAMNFLVAHIT 154
DDIT D+L GF+ + A +P + ++ M C D A + + T
Sbjct: 273 SDDITFAKLGDDLGLGFDVEIFGTYARLPGDVSRKAEA-MACSDDWIYVAARDKVRRIKT 331
Query: 155 AKAP 158
+ AP
Sbjct: 332 SNAP 335
>gnl|CDD|184840 PRK14830, PRK14830, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 251
Score = 26.4 bits (59), Expect = 7.3
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 9/50 (18%)
Query: 90 AEIETEAVLSIDDDIT--MLTPDEL-EFGFEYWNYMYTAHMPTP---IRT 133
AEI AV I D+ L P+++ E NY+ T +P P IRT
Sbjct: 154 AEI-VSAVKEIAKDVLDGKLNPEDITEELIS--NYLMTKGLPDPDLLIRT 200
>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the
molybdate transporter. Archaeal protein closely related
to ModC. ModC is an ABC-type transporter and the ATPase
component of a molybdate transport system that also
includes the periplasmic binding protein ModA and the
membrane protein ModB. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 235
Score = 26.1 bits (58), Expect = 9.8
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 103 DITMLTPDELEFGFEYWNYMYTAHM 127
DIT L P++ + + NY HM
Sbjct: 62 DITNLPPEKRDISYVPQNYALFPHM 86
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.135 0.424
Gapped
Lambda K H
0.267 0.0634 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,199,363
Number of extensions: 829306
Number of successful extensions: 575
Number of sequences better than 10.0: 1
Number of HSP's gapped: 573
Number of HSP's successfully gapped: 11
Length of query: 176
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 86
Effective length of database: 6,945,742
Effective search space: 597333812
Effective search space used: 597333812
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.6 bits)