RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy979
(176 letters)
>1omz_A Alpha-1,4-N-acetylhexosaminyltransferase EXTL2; rossmann fold, DXD
motif; HET: UD2; 2.10A {Mus musculus} SCOP: c.68.1.15
PDB: 1omx_A* 1on6_A* 1on8_A*
Length = 293
Score = 127 bits (319), Expect = 2e-36
Identities = 46/191 (24%), Positives = 64/191 (33%), Gaps = 59/191 (30%)
Query: 27 DRVHSLFLLMEQLALVPSVSKILVIWNNQAKSPPPVSKWPKISKSW---TIIRTDENKLS 83
+R L L+ VPS+ K++V+WNN P W + NK+
Sbjct: 38 NRTDLLLRLLNHYQAVPSLHKVIVVWNNV-GEKGPEELWNSLGPHPIPVIFKPQTANKMR 96
Query: 84 KRFYPYAEIETEAVLSIDDDITMLTPDELEFGFEYW---------------------NYM 122
R + E+ET AVL +DDD +++ +L F F W Y
Sbjct: 97 NRLQVFPEVETNAVLMVDDDT-LISAQDLVFAFSIWQQFPDQIIGFVPRKHVSTSSGIYS 155
Query: 123 YT---------------------------------AHMPTPIRTYVDSHMNCEDIAMNFL 149
Y P + +D NC+DIAMNFL
Sbjct: 156 YGGFELQTPGPGNGDQYSMVLIGASFFNSKYLELFQKQPAAVHALIDETQNCDDIAMNFL 215
Query: 150 VAHITAKAPFI 160
V T K I
Sbjct: 216 VTRHTGKPSGI 226
>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold,
sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A
{Trypanosoma brucei} PDB: 3qd9_A*
Length = 470
Score = 28.1 bits (61), Expect = 2.0
Identities = 4/30 (13%), Positives = 14/30 (46%)
Query: 131 IRTYVDSHMNCEDIAMNFLVAHITAKAPFI 160
I+ Y+ +C++ +F+ + + +
Sbjct: 325 IQNYIRYFFSCKECRDHFIQFNFSPNEDPV 354
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.9 bits (61), Expect = 2.3
Identities = 27/191 (14%), Positives = 52/191 (27%), Gaps = 38/191 (19%)
Query: 4 DAQGWDQIIAGSTVRKYIPHDCIDRVHSLFLLMEQLALVPSVSKILVIWNNQAKSPPPVS 63
Q D + A +T H +D E +L+ + + P V
Sbjct: 274 FKQVTDFLSAATTT-----HISLDHHSMTLTPDEVKSLL-----LKYLDCRPQDLPREVL 323
Query: 64 KW-P-KISKSWTIIRTDENKLSKRFYPYAEIETEAVLS-IDDDITMLTPDELEFGFEYWN 120
P ++S IR + + + + + + I+ + +L P E +
Sbjct: 324 TTNPRRLSIIAESIRDGLA----TWDNWKHVNCDKLTTIIESSLNVLEPAEYR---KM-- 374
Query: 121 YMYTAHMP--TPIRTYV-------DSHMNCEDIAMNFLVAHITAKAP-----FIHSI--R 164
+ + P I T + + + + K P I SI
Sbjct: 375 FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE 434
Query: 165 AHCTASGIEEL 175
L
Sbjct: 435 LKVKLENEYAL 445
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 2.4
Identities = 6/24 (25%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
Query: 81 KLSKRFYPYAEIETEAVLSIDDDI 104
KL YA+ ++ L+I +
Sbjct: 24 KLQASLKLYAD-DSAPALAIKATM 46
>1f75_A Undecaprenyl pyrophosphate synthetase; parallel beta sheet, NEW
fold for isoprenoid synthase, peptidoglycan synthesis,
transferase; 2.20A {Micrococcus luteus} SCOP: c.101.1.1
Length = 249
Score = 26.7 bits (60), Expect = 3.9
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 9/50 (18%)
Query: 90 AEIETEAVLSIDDDIT--MLTPDEL-EFGFEYWNYMYTAHMPTP---IRT 133
EI AV I + ++ DE+ E F Y++TA+MP P IRT
Sbjct: 152 KEI-ISAVQLIAERYKSGEISLDEISETHFN--EYLFTANMPDPELLIRT 198
>3qas_B Undecaprenyl pyrophosphate synthase; alpha-helix, isoprenoid
biosynthesis, transferase; 1.70A {Escherichia coli} PDB:
1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A*
2e9c_A* 2e9d_A* 1ueh_A 1x09_A* 1x08_A*
Length = 253
Score = 26.7 bits (60), Expect = 4.3
Identities = 9/50 (18%), Positives = 19/50 (38%), Gaps = 9/50 (18%)
Query: 90 AEIETEAVLSIDDDIT--MLTPDEL-EFGFEYWNYMYTAHMPTP---IRT 133
+I + V + + + L PD++ E ++ + IRT
Sbjct: 149 WDI-VQGVRQLAEKVQQGNLQPDQIDEEMLN--QHVCMHELAPVDLVIRT 195
>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL
biogenesis/degradation, cell cycle, P transferase; HET:
GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A*
2vg4_A
Length = 284
Score = 26.8 bits (60), Expect = 4.5
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 9/50 (18%)
Query: 90 AEIETEAVLSIDDDIT--MLTPDEL-EFGFEYWNYMYTAHMPTP---IRT 133
EI TEA I ++ L P+ + E ++ +P +RT
Sbjct: 187 TEI-TEATREIAREVAAGRLNPERITESTIA--RHLQRPDIPDVDLFLRT 233
>2vg0_A Short-chain Z-isoprenyl diphosphate synthetase; peptidoglycan
synthesis, cell WALL biogenesis/degradation, secreted,
cell shape; HET: GPP; 1.7A {Mycobacterium tuberculosis}
PDB: 2vfw_A* 2vg1_A*
Length = 227
Score = 25.9 bits (58), Expect = 6.5
Identities = 8/42 (19%), Positives = 17/42 (40%), Gaps = 9/42 (21%)
Query: 95 EAVLSIDDDITMLTPDELEFGFEYWNYMYTAHMPTP---IRT 133
+ ++ + +T + + +YT+ P P IRT
Sbjct: 148 ANGATAEELVDAVTVEGIS------ENLYTSGQPDPDLVIRT 183
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299,
PSI-2, structure initiative; HET: MSE GOL; 2.23A
{Sinorhizobium meliloti}
Length = 304
Score = 25.8 bits (57), Expect = 8.6
Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 10/51 (19%)
Query: 72 WTIIRTDENKLSKRF---------YPYAEIETEAVLSIDDDITMLTPDELE 113
W +IR + +K R Y + A+ +D+ I P L
Sbjct: 253 WAVIRGN-DKRRSRINVIRHMLTKLDYDGKDEAAIGEVDEKILGSGPGFLR 302
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.135 0.424
Gapped
Lambda K H
0.267 0.0372 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,848,866
Number of extensions: 158658
Number of successful extensions: 335
Number of sequences better than 10.0: 1
Number of HSP's gapped: 332
Number of HSP's successfully gapped: 15
Length of query: 176
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 89
Effective length of database: 4,272,666
Effective search space: 380267274
Effective search space used: 380267274
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.5 bits)