RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy979
         (176 letters)



>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase
           (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 265

 Score = 51.2 bits (121), Expect = 7e-09
 Identities = 31/120 (25%), Positives = 50/120 (41%), Gaps = 5/120 (4%)

Query: 25  CIDRVHSLFLLMEQLALVPSVSKILVIWNNQAKSPPPVSKWPKISKSWTIIR---TDENK 81
             +R   L  L+     VPS+ K++V+WNN      P   W  +      +       NK
Sbjct: 11  TYNRTDLLLRLLNHYQAVPSLHKVIVVWNNV-GEKGPEELWNSLGPHPIPVIFKPQTANK 69

Query: 82  LSKRFYPYAEIETEAVLSIDDDITMLTPDELEFGFEYWNYMYTAHMPTPIRTYVDSHMNC 141
           +  R   + E+ET AVL +DDD  +++  +L F F  W       +    R +V +    
Sbjct: 70  MRNRLQVFPEVETNAVLMVDDDT-LISAQDLVFAFSIWQQFPDQIIGFVPRKHVSTSSGI 128


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.135    0.424 

Gapped
Lambda     K      H
   0.267   0.0419    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 712,901
Number of extensions: 31870
Number of successful extensions: 77
Number of sequences better than 10.0: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 1
Length of query: 176
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 97
Effective length of database: 1,322,926
Effective search space: 128323822
Effective search space used: 128323822
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.8 bits)