BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9793
(133 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FP3|A Chain A, Crystal Structure Of N-Acyl-D-Glucosamine 2-Epimerase From
Porcine Kidney
pdb|1FP3|B Chain B, Crystal Structure Of N-Acyl-D-Glucosamine 2-Epimerase From
Porcine Kidney
Length = 402
Score = 30.0 bits (66), Expect = 0.42, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 70 LQALKRKAGESIGEELQVGHVCKRRI-EHLKEHSGNVLSNTSPD 112
++ L + E G Q+GH C RRI +H++ VL N S D
Sbjct: 189 VEQLGEEDEELAGRYAQLGHWCARRILQHVQRDGQAVLENVSED 232
>pdb|2GAF|A Chain A, Crystal Structure Of The Vaccinia Polyadenylate Polymerase
Heterodimer (Apo Form)
Length = 297
Score = 28.9 bits (63), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Query: 19 LNKKFRAVQKTIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAG 78
L+K F ++ ID E+ Y +ANE+ K + P ++ LLG +F L L+R
Sbjct: 6 LDKPFXYFEE-IDNELDYEPESANEVAKKL-----PYQGQLKLLLGELF-FLSKLQRHGI 58
Query: 79 ESIGEELQVGHVCKRRIEHLKEHSGNV 105
+ +G I +L++H N+
Sbjct: 59 LDGATVVYIGSAPGTHIRYLRDHFYNL 85
>pdb|2GA9|A Chain A, Crystal Structure Of The Heterodimeric Vaccinia Virus
Polyadenylate Polymerase With Bound Atp-Gamma-S
pdb|3ER8|A Chain A, Crystal Structure Of The Heterodimeric Vaccinia Virus Mrna
Polyadenylate Polymerase Complex With Two Fragments Of
Rna
pdb|3ER8|B Chain B, Crystal Structure Of The Heterodimeric Vaccinia Virus Mrna
Polyadenylate Polymerase Complex With Two Fragments Of
Rna
pdb|3ER9|A Chain A, Crystal Structure Of The Heterodimeric Vaccinia Virus Mrna
Polyadenylate Polymerase Complex With Uu And 3'-deoxy
Atp
pdb|3ERC|A Chain A, Crystal Structure Of The Heterodimeric Vaccinia Virus Mrna
Polyadenylate Polymerase With Three Fragments Of Rna And
3'-Deoxy Atp
pdb|3ERC|B Chain B, Crystal Structure Of The Heterodimeric Vaccinia Virus Mrna
Polyadenylate Polymerase With Three Fragments Of Rna And
3'-Deoxy Atp
Length = 297
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Query: 19 LNKKFRAVQKTIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAG 78
L+K F ++ ID E+ Y +ANE+ K + P ++ LLG +F L L+R
Sbjct: 6 LDKPFMYFEE-IDNELDYEPESANEVAKKL-----PYQGQLKLLLGELF-FLSKLQRHGI 58
Query: 79 ESIGEELQVGHVCKRRIEHLKEHSGNV 105
+ +G I +L++H N+
Sbjct: 59 LDGATVVYIGSAPGTHIRYLRDHFYNL 85
>pdb|1P39|A Chain A, Dc26 Mutant Of Vaccinia Virus Protein Vp39 In Complex With
S- Adenosylhomocysteine And M7g(5')pppg
pdb|1V39|A Chain A, Dc26 Mutant Of Vaccinia Virus Protein Vp39 In Complex With
S- Adenosylhomocysteine And M7g(5')pppg
pdb|1VP9|A Chain A, Dc26 Mutant Of Vaccinia Virus Protein Vp39 In Complex With
S- Adenosylhomocysteine
pdb|2VP3|A Chain A, Dc26 Mutant Of Vaccinia Virus Protein Vp39 In Complex With
S- Adenosylhomocysteine And M7g(5')pppg
Length = 322
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Query: 19 LNKKFRAVQKTIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAG 78
L+K F ++ ID E+ Y +ANE+ K + P ++ LLG +F L L+R
Sbjct: 21 LDKPFMYFEE-IDNELDYEPESANEVAKKL-----PYQGQLKLLLGELF-FLSKLQRHGI 73
Query: 79 ESIGEELQVGHVCKRRIEHLKEHSGNV 105
+ +G I +L++H N+
Sbjct: 74 LDGATVVYIGSAPGTHIRYLRDHFYNL 100
>pdb|1JTE|A Chain A, Crystal Structure Analysis Of Vp39 F180w Mutant
pdb|1JTF|A Chain A, Crystal Structure Analysis Of Vp39-f180w Mutant And
M7gpppg Complex
Length = 307
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Query: 19 LNKKFRAVQKTIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAG 78
L+K F ++ ID E+ Y +ANE+ K + P ++ LLG +F L L+R
Sbjct: 6 LDKPFMYFEE-IDNELDYEPESANEVAKKL-----PYQGQLKLLLGELF-FLSKLQRHGI 58
Query: 79 ESIGEELQVGHVCKRRIEHLKEHSGNV 105
+ +G I +L++H N+
Sbjct: 59 LDGATVVYIGSAPGTHIRYLRDHFYNL 85
>pdb|1JSZ|A Chain A, Crystal Structure Analysis Of N7,9-Dimethylguanine-Vp39
Complex
pdb|1BKY|A Chain A, Vaccinia Methyltransferase Vp39 Complexed With M1cyt And
S- Adenosylhomocysteine
pdb|3MAG|A Chain A, Vaccinia Methyltransferase Vp39 Complexed With M3ade And
S- Adenosylhomocysteine
Length = 307
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Query: 19 LNKKFRAVQKTIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAG 78
L+K F ++ ID E+ Y +ANE+ K + P ++ LLG +F L L+R
Sbjct: 6 LDKPFMYFEE-IDNELDYEPESANEVAKKL-----PYQGQLKLLLGELF-FLSKLQRHGI 58
Query: 79 ESIGEELQVGHVCKRRIEHLKEHSGNV 105
+ +G I +L++H N+
Sbjct: 59 LDGATVVYIGSAPGTHIRYLRDHFYNL 85
>pdb|1B42|A Chain A, Vaccinia Methyltransferase Vp39 Complexed With M1ade And
S- Adenosylhomocysteine
pdb|3MCT|A Chain A, Vaccinia Methyltransferase Vp39 Complexed With M3cyt And
S- Adenosylhomocysteine
Length = 297
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Query: 19 LNKKFRAVQKTIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAG 78
L+K F ++ ID E+ Y +ANE+ K + P ++ LLG +F L L+R
Sbjct: 6 LDKPFMYFEE-IDNELDYEPESANEVAKKL-----PYQGQLKLLLGELF-FLSKLQRHGI 58
Query: 79 ESIGEELQVGHVCKRRIEHLKEHSGNV 105
+ +G I +L++H N+
Sbjct: 59 LDGATVVYIGSAPGTHIRYLRDHFYNL 85
>pdb|1EAM|A Chain A, Vaccinia Methyltransferase Vp39 Mutant (Ec: 2.7.7.19)
Length = 307
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Query: 19 LNKKFRAVQKTIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAG 78
L+K F ++ ID E+ Y +ANE+ K + P ++ LLG +F L L+R
Sbjct: 6 LDKPFMYFEE-IDNELDYEPESANEVAKKL-----PYQGQLKLLLGELF-FLSKLQRHGI 58
Query: 79 ESIGEELQVGHVCKRRIEHLKEHSGNV 105
+ +G I +L++H N+
Sbjct: 59 LDGATVVYIGSAPGTHIRYLRDHFYNL 85
>pdb|1AV6|A Chain A, Vaccinia Methyltransferase Vp39 Complexed With M7g Capped
Rna Hexamer And S-Adenosylhomocysteine
Length = 295
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Query: 19 LNKKFRAVQKTIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAG 78
L+K F ++ ID E+ Y +ANE+ K + P ++ LLG +F L L+R
Sbjct: 4 LDKPFMYFEE-IDNELDYEPESANEVAKKL-----PYQGQLKLLLGELF-FLSKLQRHGI 56
Query: 79 ESIGEELQVGHVCKRRIEHLKEHSGNV 105
+ +G I +L++H N+
Sbjct: 57 LDGATVVYIGSAPGTHIRYLRDHFYNL 83
>pdb|4DCG|A Chain A, Vaccinia Methyltransferase Vp39 Mutant D182a Complexed
With M7g And S-Adenosylhomocysteine
Length = 307
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Query: 19 LNKKFRAVQKTIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAG 78
L+K F ++ ID E+ Y +ANE+ K + P ++ LLG +F L L+R
Sbjct: 6 LDKPFMYFEE-IDNELDYEPESANEVAKKL-----PYQGQLKLLLGELF-FLSKLQRHGI 58
Query: 79 ESIGEELQVGHVCKRRIEHLKEHSGNV 105
+ +G I +L++H N+
Sbjct: 59 LDGATVVYIGSAPGTHIRYLRDHFYNL 85
>pdb|1EQA|A Chain A, Vaccinia Methyltransferase Vp39 Mutant E233q Complexed
With M7g And S-Adenosylhomocysteine
Length = 297
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Query: 19 LNKKFRAVQKTIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAG 78
L+K F ++ ID E+ Y +ANE+ K + P ++ LLG +F L L+R
Sbjct: 6 LDKPFMYFEE-IDNELDYEPESANEVAKKL-----PYQGQLKLLLGELF-FLSKLQRHGI 58
Query: 79 ESIGEELQVGHVCKRRIEHLKEHSGNV 105
+ +G I +L++H N+
Sbjct: 59 LDGATVVYIGSAPGTHIRYLRDHFYNL 85
>pdb|1VPT|A Chain A, As11 Variant Of Vaccinia Virus Protein Vp39 In Complex
With S- Adenosyl-L-Methionine
Length = 348
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Query: 19 LNKKFRAVQKTIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAG 78
L+K F ++ ID E+ Y +ANE+ K + P ++ LLG +F L L+R
Sbjct: 21 LDKPFMYFEE-IDNELDYEPESANEVAKKL-----PYQGQLKLLLGELF-FLSKLQRHGI 73
Query: 79 ESIGEELQVGHVCKRRIEHLKEHSGNV 105
+ +G I +L++H N+
Sbjct: 74 LDGATVVYIGSAPGTHIRYLRDHFYNL 100
>pdb|1VP3|A Chain A, Vaccinia Virus Protein Vp39 In Complex With
S-Adenosylhomocysteine
Length = 348
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Query: 19 LNKKFRAVQKTIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAG 78
L+K F ++ ID E+ Y +ANE+ K + P ++ LLG +F L L+R
Sbjct: 21 LDKPFMYFEE-IDNELDYEPESANEVAKKL-----PYQGQLKLLLGELF-FLSKLQRHGI 73
Query: 79 ESIGEELQVGHVCKRRIEHLKEHSGNV 105
+ +G I +L++H N+
Sbjct: 74 LDGATVVYIGSAPGTHIRYLRDHFYNL 100
>pdb|2L5H|A Chain A, Solution Structure Of The H189q Mutant Of The Enzyme I
Dimer Using Residual Dipolar Couplings And Small Angle
X-Ray Scattering
pdb|2L5H|B Chain B, Solution Structure Of The H189q Mutant Of The Enzyme I
Dimer Using Residual Dipolar Couplings And Small Angle
X-Ray Scattering
Length = 573
Score = 27.3 bits (59), Expect = 2.6, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 6/39 (15%)
Query: 58 EVTRLLGGMFE---RLQALKRKAGESIGEELQV---GHV 90
EV R L G + +L+ +K KAGE+ GEE + GH+
Sbjct: 39 EVERFLSGRAKASAQLETIKTKAGETFGEEKEAIFEGHI 77
>pdb|2KX9|A Chain A, Solution Structure Of The Enzyme I Dimer Using Residual
Dipolar Couplings And Small Angle X-Ray Scattering
pdb|2KX9|B Chain B, Solution Structure Of The Enzyme I Dimer Using Residual
Dipolar Couplings And Small Angle X-Ray Scattering
pdb|2XDF|A Chain A, Solution Structure Of The Enzyme I Dimer Complexed With
Hpr Using Residual Dipolar Couplings And Small Angle
X-Ray Scattering
pdb|2XDF|B Chain B, Solution Structure Of The Enzyme I Dimer Complexed With
Hpr Using Residual Dipolar Couplings And Small Angle
X-Ray Scattering
Length = 573
Score = 27.3 bits (59), Expect = 2.6, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 6/39 (15%)
Query: 58 EVTRLLGGMFE---RLQALKRKAGESIGEELQV---GHV 90
EV R L G + +L+ +K KAGE+ GEE + GH+
Sbjct: 39 EVERFLSGRAKASAQLETIKTKAGETFGEEKEAIFEGHI 77
>pdb|3RKU|A Chain A, Substrate Fingerprint And The Structure Of Nadp+ Dependent
Serine Dehydrogenase From Saccharomyces Cerevisiae
Complexed With Nadp+
pdb|3RKU|B Chain B, Substrate Fingerprint And The Structure Of Nadp+ Dependent
Serine Dehydrogenase From Saccharomyces Cerevisiae
Complexed With Nadp+
pdb|3RKU|C Chain C, Substrate Fingerprint And The Structure Of Nadp+ Dependent
Serine Dehydrogenase From Saccharomyces Cerevisiae
Complexed With Nadp+
pdb|3RKU|D Chain D, Substrate Fingerprint And The Structure Of Nadp+ Dependent
Serine Dehydrogenase From Saccharomyces Cerevisiae
Complexed With Nadp+
Length = 287
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Query: 21 KKFRAVQKTIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAGES 80
+K ++KTID+E + +L+ T A KP + + + F+ + L AG++
Sbjct: 71 EKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENLPQ----EFKDIDILVNNAGKA 126
Query: 81 IGEELQVGHVCKRRIEHLKEHSGNVLSNTSPDEIP 115
+G + +VG + I+ + + + L N + +P
Sbjct: 127 LGSD-RVGQIATEDIQDVFDTNVTALINITQAVLP 160
>pdb|2HWG|A Chain A, Structure Of Phosphorylated Enzyme I Of The
Phosphoenolpyruvate:sugar Phosphotransferase System
pdb|2HWG|B Chain B, Structure Of Phosphorylated Enzyme I Of The
Phosphoenolpyruvate:sugar Phosphotransferase System
Length = 575
Score = 26.2 bits (56), Expect = 5.5, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Query: 58 EVTRLLGGMFE---RLQALKRKAGESIGEE 84
EV R L G + +L+ +K KAGE+ GEE
Sbjct: 39 EVERFLSGRAKASAQLETIKTKAGETFGEE 68
>pdb|3EZE|A Chain A, Complex Of The Amino Terminal Domain Of Enzyme I And The
Histidine-Containing Phosphocarrier Protein Hpr From
Escherichia Coli Nmr, Restrained Regularized Mean
Structure
pdb|2EZB|A Chain A, Amino Terminal Domain Of Enzyme I From Escherichia Coli,
Nmr, 14 Structures
pdb|2EZC|A Chain A, Amino Terminal Domain Of Enzyme I From Escherichia Coli,
Nmr, 14 Structures
pdb|3EZB|A Chain A, Complex Of The Amino Terminal Domain Of Enzyme I And The
Histidine-Containing Phosphocarrier Protein Hpr From
Escherichia Coli
pdb|1EZA|A Chain A, Amino Terminal Domain Of Enzyme I From Escherichia Coli
Nmr, Restrained Regularized Mean Structure
pdb|1EZB|A Chain A, Amino Terminal Domain Of Enzyme I From Escherichia Coli,
Nmr, 17 Structures
pdb|1EZC|A Chain A, Amino Terminal Domain Of Enzyme I From Escherichia Coli,
Nmr, 17 Structures
pdb|1EZD|A Chain A, Amino Terminal Domain Of Enzyme I From Escherichia Coli
Nmr, 16 Structures
pdb|2EZA|A Chain A, Amino Terminal Domain Of Enzyme I From Escherichia Coli,
Nmr, Restrained Regularized Mean Structure
Length = 259
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 6/40 (15%)
Query: 58 EVTRLLGGMFE---RLQALKRKAGESIGEELQV---GHVC 91
EV R L G + +L+ +K KAGE+ GEE + GH+
Sbjct: 39 EVERFLSGRAKASAQLETIKTKAGETFGEEKEAIFEGHIM 78
>pdb|1ZYM|A Chain A, Amino Terminal Domain Of Enzyme I From Escherichia Coli
pdb|1ZYM|B Chain B, Amino Terminal Domain Of Enzyme I From Escherichia Coli
Length = 258
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 6/40 (15%)
Query: 58 EVTRLLGGMFE---RLQALKRKAGESIGEELQV---GHVC 91
EV R L G + +L+ +K KAGE+ GEE + GH+
Sbjct: 39 EVERFLSGRAKASAQLETIKTKAGETFGEEKEAIFEGHIM 78
>pdb|3B5O|A Chain A, Crystal Structure Of A Cadd-Like Protein Of Unknown
Function (Npun_f6505) From Nostoc Punctiforme Pcc 73102
At 1.35 A Resolution
pdb|3B5P|A Chain A, Crystal Structure Of A Cadd-Like Protein Of Unknown
Function (Npun_f6505) From Nostoc Punctiforme Pcc 73102
At 2.00 A Resolution
Length = 244
Score = 26.2 bits (56), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 40/107 (37%), Gaps = 21/107 (19%)
Query: 20 NKKFRAVQKTIDREVSYVQSAANELEKTIASSEKPPLTEVTRLL-----GGMFERLQALK 74
+K R V DR+V YV A +E T P LT + +L+ G + + LQ
Sbjct: 121 SKLLRTVLSLFDRQVDYVLGATYAIEAT----SIPELTLIVKLVEWLHEGAIPKDLQYFF 176
Query: 75 RKAGESIGEELQVGHVCKRRIEHLKEHSGNVLSNTSPDEIPPHNTPF 121
K H+ + IEH +V + P+E F
Sbjct: 177 SK------------HLDEWEIEHEAGLRTSVAAYIQPEEFGEFAAGF 211
>pdb|3EZA|A Chain A, Complex Of The Amino Terminal Domain Of Enzyme I And The
Histidine-Containing Phosphocarrier Protein Hpr From
Escherichia Coli Nmr, Restrained Regularized Mean
Structure
Length = 249
Score = 26.2 bits (56), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 6/40 (15%)
Query: 58 EVTRLLGGMFE---RLQALKRKAGESIGEELQV---GHVC 91
EV R L G + +L+ +K KAGE+ GEE + GH+
Sbjct: 39 EVERFLSGRAKASAQLETIKTKAGETFGEEKEAIFEGHIM 78
>pdb|3HYK|A Chain A, 2.31 Angstrom Resolution Crystal Structure Of A
Holo-(Acyl-Carrier- Protein) Synthase From Bacillus
Anthracis Str. Ames In Complex With Coa (3',5'-Adp)
pdb|3HYK|B Chain B, 2.31 Angstrom Resolution Crystal Structure Of A
Holo-(Acyl-Carrier- Protein) Synthase From Bacillus
Anthracis Str. Ames In Complex With Coa (3',5'-Adp)
pdb|3HYK|C Chain C, 2.31 Angstrom Resolution Crystal Structure Of A
Holo-(Acyl-Carrier- Protein) Synthase From Bacillus
Anthracis Str. Ames In Complex With Coa (3',5'-Adp)
Length = 122
Score = 25.8 bits (55), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 26 VQKTIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAGESIGEEL 85
++K +D ++ + + E E+ +A K + +T + G F +A + G IG+E+
Sbjct: 18 IEKXLDGKLKFXERILTENERNVAKGLKG--SRLTEFVAGRFAAKEAYSKAVGTGIGKEV 75
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.132 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,833,520
Number of Sequences: 62578
Number of extensions: 130198
Number of successful extensions: 278
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 277
Number of HSP's gapped (non-prelim): 26
length of query: 133
length of database: 14,973,337
effective HSP length: 88
effective length of query: 45
effective length of database: 9,466,473
effective search space: 425991285
effective search space used: 425991285
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 46 (22.3 bits)