Query psy9793
Match_columns 133
No_of_seqs 100 out of 165
Neff 5.5
Searched_HMMs 46136
Date Fri Aug 16 19:53:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9793.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9793hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0396|consensus 99.9 6.6E-22 1.4E-26 167.0 11.8 102 1-103 1-104 (389)
2 PRK04406 hypothetical protein; 93.2 1.8 3.8E-05 29.3 10.0 32 86-117 39-74 (75)
3 PRK04325 hypothetical protein; 92.3 1.6 3.5E-05 29.3 8.0 9 110-118 66-74 (74)
4 PRK02793 phi X174 lysis protei 92.2 1.8 4E-05 28.9 8.1 31 87-117 37-71 (72)
5 PRK02119 hypothetical protein; 92.2 2.5 5.3E-05 28.4 9.7 11 107-117 62-72 (73)
6 PF04102 SlyX: SlyX; InterPro 91.4 1.7 3.7E-05 28.7 7.1 40 78-117 24-68 (69)
7 PF11221 Med21: Subunit 21 of 90.7 5.6 0.00012 29.6 10.5 79 20-99 64-142 (144)
8 PRK00736 hypothetical protein; 90.6 2.8 6.2E-05 27.7 7.6 9 109-117 59-67 (68)
9 PRK00295 hypothetical protein; 90.4 3.7 8E-05 27.1 8.3 11 107-117 57-67 (68)
10 PF14712 Snapin_Pallidin: Snap 90.3 4.1 8.9E-05 27.5 9.3 33 64-100 60-92 (92)
11 PF04136 Sec34: Sec34-like fam 87.7 8 0.00017 29.3 9.2 49 58-106 32-83 (157)
12 PRK00846 hypothetical protein; 81.2 15 0.00032 25.1 8.0 32 86-117 41-76 (77)
13 PF05508 Ran-binding: RanGTP-b 75.1 48 0.001 28.2 10.1 68 13-82 38-105 (302)
14 PRK11637 AmiB activator; Provi 74.0 34 0.00074 29.4 9.3 42 59-100 94-135 (428)
15 PF07139 DUF1387: Protein of u 71.6 63 0.0014 27.5 10.8 44 58-101 215-258 (302)
16 COG0497 RecN ATPase involved i 71.3 50 0.0011 30.3 10.0 78 23-102 264-341 (557)
17 PF05120 GvpG: Gas vesicle pro 71.2 30 0.00066 23.7 8.4 62 14-76 7-71 (79)
18 PF03962 Mnd1: Mnd1 family; I 70.3 49 0.0011 25.7 9.3 86 14-101 59-150 (188)
19 PF06825 HSBP1: Heat shock fac 69.6 4.4 9.5E-05 26.0 2.2 43 36-82 7-49 (54)
20 PF05713 MobC: Bacterial mobil 69.3 22 0.00048 21.4 5.4 20 32-51 3-22 (48)
21 KOG3088|consensus 69.2 22 0.00047 30.3 6.7 32 58-89 61-92 (313)
22 PF07889 DUF1664: Protein of u 68.2 47 0.001 24.6 10.7 30 20-49 38-67 (126)
23 PF07303 Occludin_ELL: Occludi 68.1 40 0.00086 23.8 8.9 71 28-101 25-95 (101)
24 PF12805 FUSC-like: FUSC-like 68.0 63 0.0014 26.1 10.0 87 13-99 192-281 (284)
25 PF10157 DUF2365: Uncharacteri 67.2 45 0.00097 25.4 7.6 74 26-101 53-141 (149)
26 PRK04778 septation ring format 66.9 98 0.0021 27.9 11.9 84 14-100 140-237 (569)
27 PF00804 Syntaxin: Syntaxin; 64.5 38 0.00082 22.2 7.0 30 72-101 42-71 (103)
28 KOG4360|consensus 64.0 39 0.00084 31.0 7.7 105 19-124 210-324 (596)
29 COG4477 EzrA Negative regulato 63.5 54 0.0012 30.1 8.5 61 13-81 374-437 (570)
30 cd00238 ERp29c ERp29 and ERp38 62.8 31 0.00067 24.0 5.6 41 28-73 50-90 (93)
31 TIGR00634 recN DNA repair prot 62.7 95 0.002 27.8 10.0 44 58-101 301-344 (563)
32 PF07749 ERp29: Endoplasmic re 62.4 28 0.0006 24.1 5.3 47 22-74 46-92 (95)
33 PF02609 Exonuc_VII_S: Exonucl 61.4 32 0.0007 21.2 5.0 18 82-99 30-47 (53)
34 PRK10361 DNA recombination pro 61.2 91 0.002 28.1 9.5 86 16-102 90-181 (475)
35 PF06160 EzrA: Septation ring 61.1 1.3E+02 0.0028 27.2 11.2 81 13-101 371-459 (560)
36 PF14966 DNA_repr_REX1B: DNA r 60.7 40 0.00087 23.6 5.9 48 22-75 37-84 (97)
37 PF10079 DUF2317: Uncharacteri 59.3 87 0.0019 28.4 9.2 70 14-83 406-481 (542)
38 PF10498 IFT57: Intra-flagella 58.7 1E+02 0.0022 26.5 9.2 46 56-101 261-306 (359)
39 PRK10780 periplasmic chaperone 58.3 76 0.0017 23.8 9.6 85 9-96 38-126 (165)
40 PF07011 DUF1313: Protein of u 58.2 62 0.0013 22.7 6.7 62 16-79 8-70 (87)
41 PF04899 MbeD_MobD: MbeD/MobD 57.1 56 0.0012 21.8 6.2 56 23-79 12-67 (70)
42 PF03938 OmpH: Outer membrane 56.6 74 0.0016 23.1 8.7 87 8-97 30-120 (158)
43 PF02183 HALZ: Homeobox associ 55.9 45 0.00097 20.3 5.3 17 29-45 2-18 (45)
44 PF08317 Spc7: Spc7 kinetochor 55.8 1.2E+02 0.0026 25.3 10.3 40 64-103 254-293 (325)
45 COG2900 SlyX Uncharacterized p 55.5 63 0.0014 21.9 8.1 22 96-117 50-71 (72)
46 KOG3564|consensus 55.3 1.6E+02 0.0036 27.0 10.0 77 14-91 28-107 (604)
47 PF06705 SF-assemblin: SF-asse 54.9 86 0.0019 25.0 7.7 52 23-81 61-112 (247)
48 PF10241 KxDL: Uncharacterized 54.5 67 0.0015 21.9 7.9 25 58-82 61-85 (88)
49 PF09432 THP2: Tho complex sub 54.3 53 0.0011 24.7 5.8 47 25-78 85-131 (132)
50 PF00435 Spectrin: Spectrin re 54.1 55 0.0012 20.8 9.0 22 58-79 77-98 (105)
51 smart00030 CLb CLUSTERIN Beta 53.7 1.2E+02 0.0025 24.5 10.4 37 14-50 4-40 (206)
52 smart00150 SPEC Spectrin repea 53.4 56 0.0012 20.7 9.3 21 58-78 74-94 (101)
53 PRK00888 ftsB cell division pr 53.3 40 0.00087 23.9 5.0 64 59-122 39-102 (105)
54 cd00632 Prefoldin_beta Prefold 52.6 70 0.0015 22.2 6.1 24 12-35 57-80 (105)
55 PHA01750 hypothetical protein 52.4 70 0.0015 21.6 7.1 18 62-79 57-74 (75)
56 PF02185 HR1: Hr1 repeat; Int 52.2 61 0.0013 20.8 6.0 55 25-81 5-60 (70)
57 PF04740 LXG: LXG domain of WX 51.9 1E+02 0.0022 23.3 10.3 79 20-99 105-183 (204)
58 PRK04778 septation ring format 51.7 84 0.0018 28.3 7.8 53 22-77 246-298 (569)
59 PF06160 EzrA: Septation ring 51.3 85 0.0018 28.3 7.8 54 22-78 242-295 (560)
60 KOG1510|consensus 51.2 1.1E+02 0.0023 23.3 10.7 75 27-102 58-132 (139)
61 smart00787 Spc7 Spc7 kinetocho 51.2 76 0.0016 26.7 7.1 43 61-103 246-288 (312)
62 PLN02372 violaxanthin de-epoxi 49.9 1.9E+02 0.0042 25.9 11.0 80 16-102 363-448 (455)
63 cd00446 GrpE GrpE is the adeni 48.9 1E+02 0.0022 22.4 7.0 20 61-80 36-55 (137)
64 PF07926 TPR_MLP1_2: TPR/MLP1/ 47.0 1.1E+02 0.0024 22.2 9.3 79 17-100 34-119 (132)
65 PF11902 DUF3422: Protein of u 46.1 2E+02 0.0042 25.5 9.0 68 33-101 217-284 (420)
66 PF06148 COG2: COG (conserved 45.6 38 0.00083 24.4 4.0 29 11-39 23-51 (133)
67 PF07106 TBPIP: Tat binding pr 45.4 1.3E+02 0.0028 22.5 7.8 29 53-82 109-137 (169)
68 cd04770 HTH_HMRTR Helix-Turn-H 45.2 1.1E+02 0.0023 21.5 7.1 29 71-100 82-110 (123)
69 COG3937 Uncharacterized conser 45.1 1.2E+02 0.0026 22.1 7.8 51 49-100 35-97 (108)
70 PF10168 Nup88: Nuclear pore c 45.0 1.7E+02 0.0037 27.6 8.9 12 88-99 641-652 (717)
71 PRK13456 DNA protection protei 44.9 1.6E+02 0.0034 23.4 9.1 47 71-117 52-104 (186)
72 PF01383 CpcD: CpcD/allophycoc 44.1 17 0.00038 23.0 1.7 18 12-29 29-46 (56)
73 COG3880 Modulator of heat shoc 43.9 91 0.002 24.5 6.0 41 65-105 133-174 (176)
74 PRK10869 recombination and rep 43.1 2.5E+02 0.0055 25.3 9.8 43 58-100 296-338 (553)
75 PF06156 DUF972: Protein of un 42.9 1.2E+02 0.0027 21.6 7.6 43 58-100 12-57 (107)
76 KOG3230|consensus 42.8 1.8E+02 0.004 23.6 11.1 63 13-79 8-84 (224)
77 PF05531 NPV_P10: Nucleopolyhe 42.2 1.1E+02 0.0024 20.8 7.7 53 23-80 9-61 (75)
78 cd07594 BAR_Endophilin_B The B 42.1 1.8E+02 0.004 23.4 8.9 42 58-99 185-226 (229)
79 PF10046 BLOC1_2: Biogenesis o 41.7 1.2E+02 0.0025 21.0 10.9 74 20-101 2-81 (99)
80 PF11026 DUF2721: Protein of u 41.5 60 0.0013 23.7 4.5 42 59-100 19-64 (130)
81 PRK14064 exodeoxyribonuclease 40.9 62 0.0013 21.7 4.1 15 85-99 40-54 (75)
82 PF04568 IATP: Mitochondrial A 40.8 77 0.0017 22.6 4.8 29 68-96 72-100 (100)
83 PF07586 HXXSHH: Protein of un 40.8 1.4E+02 0.0031 24.4 7.1 12 13-24 133-144 (302)
84 PF14431 YwqJ-deaminase: YwqJ- 40.4 16 0.00034 26.6 1.2 15 113-127 102-116 (125)
85 PF02151 UVR: UvrB/uvrC motif; 40.3 71 0.0015 18.1 3.9 32 69-100 3-35 (36)
86 PF07373 CAMP_factor: CAMP fac 40.2 1.5E+02 0.0032 24.3 6.9 67 33-102 20-88 (228)
87 KOG1419|consensus 39.4 3.3E+02 0.0071 25.5 9.9 67 16-82 501-590 (654)
88 PF01920 Prefoldin_2: Prefoldi 39.1 88 0.0019 20.9 4.8 40 8-47 52-91 (106)
89 PF07106 TBPIP: Tat binding pr 38.6 1.6E+02 0.0036 21.9 7.5 13 88-100 125-137 (169)
90 KOG2662|consensus 38.3 2.9E+02 0.0063 24.6 9.1 75 13-93 173-259 (414)
91 PF10211 Ax_dynein_light: Axon 38.2 1.9E+02 0.0041 22.4 10.2 16 76-91 163-178 (189)
92 PF01025 GrpE: GrpE; InterPro 38.1 1.6E+02 0.0035 21.6 6.8 106 11-123 15-122 (165)
93 TIGR03545 conserved hypothetic 37.7 3E+02 0.0064 25.2 9.1 79 22-101 179-259 (555)
94 PF06120 Phage_HK97_TLTM: Tail 37.3 2.6E+02 0.0056 23.7 9.8 58 23-83 39-96 (301)
95 cd07616 BAR_Endophilin_B1 The 37.3 2.2E+02 0.0049 23.0 8.4 26 74-99 201-226 (229)
96 COG4066 Uncharacterized protei 37.1 1.3E+02 0.0028 23.4 5.8 49 27-76 42-90 (165)
97 KOG2604|consensus 36.8 2.1E+02 0.0046 27.2 8.0 49 58-106 116-174 (733)
98 PF07058 Myosin_HC-like: Myosi 36.5 2.8E+02 0.0062 24.0 12.0 78 27-104 75-161 (351)
99 PF10234 Cluap1: Clusterin-ass 36.4 2.5E+02 0.0055 23.4 9.6 43 59-101 167-219 (267)
100 PRK14066 exodeoxyribonuclease 36.3 82 0.0018 21.2 4.1 15 85-99 38-52 (75)
101 KOG4367|consensus 36.2 2.3E+02 0.0049 26.0 7.9 40 58-97 312-352 (699)
102 PRK09039 hypothetical protein; 35.5 2.8E+02 0.006 23.5 11.1 59 33-101 145-203 (343)
103 KOG4057|consensus 35.5 2.1E+02 0.0047 22.3 8.0 67 24-91 39-125 (180)
104 PF07851 TMPIT: TMPIT-like pro 34.8 2.1E+02 0.0045 24.6 7.2 46 58-103 36-89 (330)
105 PF05549 Allexi_40kDa: Allexiv 34.1 1.6E+02 0.0034 24.7 6.2 24 58-81 85-108 (271)
106 PF10154 DUF2362: Uncharacteri 33.6 3.1E+02 0.0067 25.0 8.5 44 3-46 108-151 (510)
107 PRK14069 exodeoxyribonuclease 33.6 88 0.0019 22.2 4.1 42 58-99 12-56 (95)
108 KOG4253|consensus 33.4 2.4E+02 0.0051 22.1 7.9 54 22-79 35-88 (175)
109 PHA02682 ORF080 virion core pr 33.3 99 0.0021 25.3 4.8 22 25-46 208-229 (280)
110 PRK10636 putative ABC transpor 33.1 3.8E+02 0.0082 24.4 9.4 59 29-88 567-625 (638)
111 PF11945 WASH_WAHD: WAHD domai 33.0 3E+02 0.0064 23.2 8.6 36 62-101 37-72 (297)
112 PF11945 WASH_WAHD: WAHD domai 32.7 2E+02 0.0044 24.2 6.8 42 59-100 23-64 (297)
113 PRK14067 exodeoxyribonuclease 32.6 1.1E+02 0.0024 20.8 4.4 42 58-99 11-55 (80)
114 PF05527 DUF758: Domain of unk 32.6 2.1E+02 0.0045 22.7 6.4 73 25-99 26-98 (186)
115 PF09943 DUF2175: Uncharacteri 32.3 77 0.0017 22.8 3.6 31 13-43 69-100 (101)
116 smart00503 SynN Syntaxin N-ter 32.0 1.6E+02 0.0035 19.8 8.6 20 28-47 11-30 (117)
117 PRK00977 exodeoxyribonuclease 31.7 1E+02 0.0022 20.8 4.1 42 58-99 14-58 (80)
118 PHA03161 hypothetical protein; 31.3 2.4E+02 0.0053 21.6 11.3 9 120-128 141-149 (150)
119 PRK14063 exodeoxyribonuclease 30.9 1.1E+02 0.0025 20.4 4.2 15 85-99 39-53 (76)
120 PF12718 Tropomyosin_1: Tropom 30.5 2.3E+02 0.0049 21.0 10.1 48 28-80 45-92 (143)
121 PF10146 zf-C4H2: Zinc finger- 30.5 2.9E+02 0.0063 22.3 9.4 83 16-99 13-101 (230)
122 cd00179 SynN Syntaxin N-termin 30.4 2E+02 0.0044 20.4 8.3 17 30-46 11-27 (151)
123 PF08826 DMPK_coil: DMPK coile 30.4 1.6E+02 0.0034 19.2 7.5 22 58-79 36-57 (61)
124 COG3334 Uncharacterized conser 30.3 2.8E+02 0.0061 22.1 7.6 80 23-103 49-129 (192)
125 PRK09343 prefoldin subunit bet 30.0 2.1E+02 0.0046 20.5 6.9 6 70-75 87-92 (121)
126 PRK11637 AmiB activator; Provi 29.8 3.6E+02 0.0078 23.1 10.6 9 89-97 113-121 (428)
127 PLN02943 aminoacyl-tRNA ligase 29.6 1.4E+02 0.0031 28.8 6.0 40 11-51 876-915 (958)
128 PRK07352 F0F1 ATP synthase sub 29.5 2.4E+02 0.0053 21.1 10.0 23 24-46 42-64 (174)
129 PF07352 Phage_Mu_Gam: Bacteri 29.4 2.3E+02 0.005 20.8 6.4 15 87-101 40-54 (149)
130 PF07160 DUF1395: Protein of u 29.4 3.1E+02 0.0067 22.2 7.9 24 24-47 21-44 (243)
131 KOG0976|consensus 29.3 3.4E+02 0.0074 26.8 8.2 43 58-100 456-504 (1265)
132 PF13801 Metal_resist: Heavy-m 29.3 1.7E+02 0.0037 19.3 9.4 55 19-78 50-104 (125)
133 PRK02249 DNA primase large sub 29.2 1E+02 0.0022 26.5 4.5 38 86-125 189-226 (343)
134 PF12777 MT: Microtubule-bindi 29.2 2.5E+02 0.0055 23.5 6.9 45 58-102 239-286 (344)
135 KOG0804|consensus 29.1 4.4E+02 0.0096 23.9 10.8 33 67-99 409-441 (493)
136 PF02388 FemAB: FemAB family; 29.1 2.6E+02 0.0056 24.0 7.0 41 61-101 249-295 (406)
137 TIGR02449 conserved hypothetic 29.1 1.7E+02 0.0038 19.3 6.0 17 58-74 46-62 (65)
138 KOG3614|consensus 29.0 4.7E+02 0.01 26.9 9.4 74 26-103 1113-1186(1381)
139 PRK14150 heat shock protein Gr 28.8 2.9E+02 0.0062 21.7 7.1 22 58-79 86-107 (193)
140 PF09748 Med10: Transcription 28.7 2.3E+02 0.005 20.6 6.3 48 31-79 2-51 (128)
141 PF07851 TMPIT: TMPIT-like pro 28.7 3.8E+02 0.0082 23.0 8.9 15 31-45 3-17 (330)
142 TIGR01280 xseB exodeoxyribonuc 28.7 1.3E+02 0.0029 19.6 4.1 14 86-99 36-49 (67)
143 PRK03947 prefoldin subunit alp 28.6 2.3E+02 0.0049 20.4 6.4 23 24-46 93-115 (140)
144 PF09903 DUF2130: Uncharacteri 28.4 2E+02 0.0044 23.7 6.0 29 17-45 201-229 (267)
145 PF05701 WEMBL: Weak chloropla 28.0 2.9E+02 0.0062 24.8 7.3 73 27-100 29-104 (522)
146 PF01093 Clusterin: Clusterin; 28.0 4.4E+02 0.0095 23.6 8.5 32 19-50 3-34 (436)
147 PF04120 Iron_permease: Low af 28.0 1.3E+02 0.0028 22.5 4.4 46 58-103 70-115 (132)
148 PF13094 CENP-Q: CENP-Q, a CEN 27.8 2.5E+02 0.0055 20.7 9.9 49 26-82 28-76 (160)
149 cd07665 BAR_SNX1 The Bin/Amphi 27.7 3.3E+02 0.0072 22.0 8.6 75 16-91 31-121 (234)
150 PF10481 CENP-F_N: Cenp-F N-te 27.6 3.9E+02 0.0084 22.8 8.5 15 88-102 118-132 (307)
151 PRK05658 RNA polymerase sigma 27.4 4.8E+02 0.01 23.8 9.2 66 13-79 221-296 (619)
152 PF12718 Tropomyosin_1: Tropom 27.3 2.6E+02 0.0057 20.7 9.2 62 29-99 25-86 (143)
153 KOG0963|consensus 27.1 3.3E+02 0.0072 25.5 7.6 67 30-102 290-360 (629)
154 PF00261 Tropomyosin: Tropomyo 27.0 3.2E+02 0.0069 21.6 10.2 43 58-100 166-211 (237)
155 PF04961 FTCD_C: Formiminotran 26.8 3E+02 0.0065 21.2 7.6 34 58-91 49-82 (184)
156 KOG0239|consensus 26.4 4.4E+02 0.0095 24.8 8.4 43 58-101 273-315 (670)
157 PF07361 Cytochrom_B562: Cytoc 26.4 2.3E+02 0.005 19.8 7.7 66 17-84 8-83 (103)
158 PF09849 DUF2076: Uncharacteri 26.2 3.7E+02 0.008 22.1 7.5 66 33-101 5-70 (247)
159 COG3404 Methenyl tetrahydrofol 26.2 3.5E+02 0.0077 21.8 7.8 36 58-93 54-89 (208)
160 COG5074 t-SNARE complex subuni 25.8 3.6E+02 0.0077 22.6 6.9 67 9-82 20-86 (280)
161 KOG3647|consensus 25.7 3.1E+02 0.0066 23.5 6.6 43 59-101 110-162 (338)
162 COG5280 Phage-related minor ta 25.7 3E+02 0.0064 25.9 7.0 61 18-83 19-80 (634)
163 PRK14900 valS valyl-tRNA synth 25.5 3.1E+02 0.0068 26.9 7.5 39 12-51 830-868 (1052)
164 PF15112 DUF4559: Domain of un 25.2 4.4E+02 0.0094 22.6 8.9 80 17-98 214-293 (307)
165 KOG1760|consensus 25.1 2.8E+02 0.006 20.9 5.6 41 61-101 77-117 (131)
166 PF05739 SNARE: SNARE domain; 24.9 1.7E+02 0.0037 17.8 7.1 36 61-96 7-42 (63)
167 PF10458 Val_tRNA-synt_C: Valy 24.8 1.9E+02 0.0042 18.4 7.3 24 28-51 7-30 (66)
168 PF13234 rRNA_proc-arch: rRNA- 24.8 2.4E+02 0.0051 22.5 5.7 62 17-81 2-63 (268)
169 PF13600 DUF4140: N-terminal d 24.5 2.3E+02 0.005 19.2 5.2 35 61-99 70-104 (104)
170 PF12308 Noelin-1: Neurogenesi 24.5 2.7E+02 0.006 20.0 7.0 55 24-87 40-94 (101)
171 PF13851 GAS: Growth-arrest sp 24.4 3.5E+02 0.0075 21.2 9.3 41 58-99 59-99 (201)
172 PF04048 Sec8_exocyst: Sec8 ex 24.3 2.9E+02 0.0063 20.2 9.2 58 20-82 42-100 (142)
173 PRK14068 exodeoxyribonuclease 24.3 1.9E+02 0.0041 19.5 4.3 6 51-56 25-30 (76)
174 PF00901 Orbi_VP5: Orbivirus o 24.2 5.6E+02 0.012 23.5 8.5 60 15-78 141-200 (508)
175 PF07304 SRA1: Steroid recepto 24.1 2.9E+02 0.0063 20.8 5.8 33 35-69 68-100 (157)
176 PRK13169 DNA replication intia 24.1 2.8E+02 0.0061 20.0 7.0 41 59-99 13-56 (110)
177 PF03670 UPF0184: Uncharacteri 24.0 2.5E+02 0.0055 19.4 7.6 43 59-101 31-74 (83)
178 KOG0744|consensus 23.9 2.6E+02 0.0056 24.8 6.0 19 58-76 277-295 (423)
179 PF02994 Transposase_22: L1 tr 23.9 3E+02 0.0065 23.5 6.5 44 59-102 142-185 (370)
180 PF10979 DUF2786: Protein of u 23.8 1.6E+02 0.0034 17.7 3.4 15 65-79 2-16 (43)
181 cd01052 DPSL DPS-like protein, 23.7 1.7E+02 0.0038 20.6 4.4 34 70-103 37-70 (148)
182 PHA03395 p10 fibrous body prot 23.7 2.7E+02 0.0058 19.5 7.3 50 23-77 9-58 (87)
183 COG1729 Uncharacterized protei 23.6 4.3E+02 0.0093 21.9 7.9 38 61-98 56-95 (262)
184 COG4467 Regulator of replicati 23.6 2.1E+02 0.0045 21.0 4.6 39 59-97 13-54 (114)
185 cd01997 GMP_synthase_C The C-t 23.5 46 0.001 27.7 1.4 17 114-130 164-184 (295)
186 PF08537 NBP1: Fungal Nap bind 23.1 3.5E+02 0.0077 23.3 6.6 36 61-100 175-210 (323)
187 PRK14472 F0F1 ATP synthase sub 23.0 3.3E+02 0.0071 20.4 10.0 59 21-87 38-96 (175)
188 PF02646 RmuC: RmuC family; I 22.8 4E+02 0.0087 22.0 6.9 46 57-102 2-47 (304)
189 KOG1318|consensus 22.8 5.4E+02 0.012 22.8 10.2 85 16-101 226-319 (411)
190 PRK06231 F0F1 ATP synthase sub 22.7 3.8E+02 0.0082 21.0 10.1 24 23-46 70-93 (205)
191 PF06248 Zw10: Centromere/kine 22.6 3.8E+02 0.0082 24.1 7.1 52 48-100 2-53 (593)
192 PF05929 Phage_GPO: Phage caps 22.5 4.2E+02 0.0091 22.2 6.9 34 63-96 219-252 (276)
193 PRK00736 hypothetical protein; 22.4 2.3E+02 0.005 18.4 6.5 20 81-100 28-47 (68)
194 KOG0994|consensus 22.3 3.7E+02 0.0081 27.7 7.3 31 72-102 1686-1716(1758)
195 KOG4643|consensus 22.1 6.7E+02 0.014 25.3 8.8 35 65-99 502-536 (1195)
196 KOG0018|consensus 21.9 8.3E+02 0.018 24.7 9.6 29 16-44 383-411 (1141)
197 PF02601 Exonuc_VII_L: Exonucl 21.9 4.4E+02 0.0095 21.4 10.8 61 19-82 152-212 (319)
198 PRK02793 phi X174 lysis protei 21.8 2.5E+02 0.0054 18.5 6.5 11 36-46 19-29 (72)
199 PF02520 DUF148: Domain of unk 21.7 2.8E+02 0.0061 19.2 7.1 24 16-39 38-61 (113)
200 PRK10884 SH3 domain-containing 21.3 4.2E+02 0.0091 21.0 8.5 17 29-45 97-113 (206)
201 PF05597 Phasin: Poly(hydroxya 21.2 3.5E+02 0.0076 20.0 8.3 13 88-100 111-123 (132)
202 KOG0977|consensus 21.2 4.7E+02 0.01 24.1 7.4 24 60-83 203-226 (546)
203 PF04102 SlyX: SlyX; InterPro 21.2 2.4E+02 0.0053 18.2 5.7 43 31-81 10-52 (69)
204 PF10266 Strumpellin: Heredita 21.0 8.5E+02 0.019 24.4 9.8 75 29-106 413-491 (1081)
205 COG4477 EzrA Negative regulato 21.0 6.8E+02 0.015 23.3 11.5 90 12-102 328-433 (570)
206 PRK02224 chromosome segregatio 21.0 6.9E+02 0.015 23.3 11.5 33 16-48 164-196 (880)
207 PF06581 p31comet: Mad1 and Cd 20.9 1.4E+02 0.0031 24.9 3.7 18 8-25 74-91 (264)
208 PF04508 Pox_A_type_inc: Viral 20.9 1.5E+02 0.0033 15.8 2.8 18 63-80 3-20 (23)
209 TIGR03652 FeS_repair_RIC iron- 20.8 4.1E+02 0.0089 20.7 7.8 59 28-88 154-212 (216)
210 PF10359 Fmp27_WPPW: RNA pol I 20.7 4.4E+02 0.0096 23.2 7.1 59 12-80 161-219 (475)
211 cd07657 F-BAR_Fes_Fer The F-BA 20.7 4.5E+02 0.0097 21.1 7.8 33 15-47 102-134 (237)
212 PF14523 Syntaxin_2: Syntaxin- 20.6 2.7E+02 0.0059 18.5 7.5 47 34-81 5-53 (102)
213 KOG1962|consensus 20.6 4.2E+02 0.0092 21.4 6.3 23 61-83 172-194 (216)
214 PRK14127 cell division protein 20.5 3.4E+02 0.0073 19.6 7.9 45 53-102 23-67 (109)
215 KOG2307|consensus 20.4 7.4E+02 0.016 23.4 9.8 57 13-71 45-102 (705)
216 COG5259 RSC8 RSC chromatin rem 20.3 5.8E+02 0.013 23.4 7.6 31 72-102 414-445 (531)
217 PRK04325 hypothetical protein; 20.1 2.8E+02 0.006 18.4 6.5 40 79-120 30-70 (74)
218 PF04108 APG17: Autophagy prot 20.1 5.8E+02 0.012 22.1 11.5 30 16-45 264-293 (412)
219 PF10393 Matrilin_ccoil: Trime 20.0 2E+02 0.0043 17.8 3.4 15 62-76 31-45 (47)
No 1
>KOG0396|consensus
Probab=99.87 E-value=6.6e-22 Score=167.01 Aligned_cols=102 Identities=36% Similarity=0.429 Sum_probs=94.8
Q ss_pred CccccccccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCChHHHHHHHHHHHHHHHHHHHHHhh
Q psy9793 1 MTDKKCLEHPTLKVPYEILNKKFRAVQKTIDREVSYVQSAANELEKTIASS-EKPPLTEVTRLLGGMFERLQALKRKAGE 79 (133)
Q Consensus 1 ~~~il~LE~p~lkVPyElLrKnFR~~QK~IEkE~~~v~~~~~eL~k~l~~~-~~~~~~~a~~~Ld~lI~rl~~LKRKL~~ 79 (133)
|++++.|||++||||||+|+|.||+.||.|+||++.|...+++|++.+.++ ....+ .+++++|.||.|++.+|||+++
T Consensus 1 ~~~~l~l~y~l~ripye~l~kr~r~~qk~i~re~~~v~~~~~~l~~~~~sn~~~~~d-~~~~~id~Li~kv~~~krk~e~ 79 (389)
T KOG0396|consen 1 MTFHLKLEYQLFRIPYELLNKRIRHNQKVIDRETSHVLMVVAELQETLISNIVPHLD-STVSLIDRLIRKVQCLKRKLEE 79 (389)
T ss_pred CcchhhhhchhhcCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccChhHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999987654 34467 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-hhc
Q psy9793 80 SIGEELQVGHVCKRRIEHLKE-HSG 103 (133)
Q Consensus 80 ~~~eE~~~~~r~k~Rl~hL~e-l~~ 103 (133)
.++.|.+++++|++||+|+++ +..
T Consensus 80 ~iq~e~~~~~~iksRid~m~e~~~~ 104 (389)
T KOG0396|consen 80 YIQSEEEQLKRIKSRIDFMHEEISS 104 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999994 443
No 2
>PRK04406 hypothetical protein; Provisional
Probab=93.21 E-value=1.8 Score=29.31 Aligned_cols=32 Identities=13% Similarity=0.267 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHh----hhhcCCCCCCCCCCCCCC
Q psy9793 86 QVGHVCKRRIEHLK----EHSGNVLSNTSPDEIPPH 117 (133)
Q Consensus 86 ~~~~r~k~Rl~hL~----el~~~~~~~~~~~~~~~~ 117 (133)
..++++++++.+|. +.........+.++.|||
T Consensus 39 ~~I~~L~~ql~~L~~rl~~~~~~~~~~~~~e~pPPH 74 (75)
T PRK04406 39 LLITKMQDQMKYVVGKVKNMDSSNLADPAEETPPPH 74 (75)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCccC
Confidence 33444444444443 233223344567889999
No 3
>PRK04325 hypothetical protein; Provisional
Probab=92.33 E-value=1.6 Score=29.30 Aligned_cols=9 Identities=67% Similarity=1.077 Sum_probs=7.0
Q ss_pred CCCCCCCCC
Q psy9793 110 SPDEIPPHN 118 (133)
Q Consensus 110 ~~~~~~~~~ 118 (133)
..++.|||-
T Consensus 66 ~~~e~PPHY 74 (74)
T PRK04325 66 LRDEIPPHY 74 (74)
T ss_pred CCcCCCCCC
Confidence 468999993
No 4
>PRK02793 phi X174 lysis protein; Provisional
Probab=92.20 E-value=1.8 Score=28.90 Aligned_cols=31 Identities=13% Similarity=0.246 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHh----hhhcCCCCCCCCCCCCCC
Q psy9793 87 VGHVCKRRIEHLK----EHSGNVLSNTSPDEIPPH 117 (133)
Q Consensus 87 ~~~r~k~Rl~hL~----el~~~~~~~~~~~~~~~~ 117 (133)
.++++.+.+.+|. ++.+......+.++.|||
T Consensus 37 ~I~~L~~~l~~L~~rl~~~~~~~~~~~~~e~~PPH 71 (72)
T PRK02793 37 EMAKLRDHLRLLTEKLKASQPSNIASQAEETPPPH 71 (72)
T ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCCCCcCC
Confidence 3444444444443 233322234456789999
No 5
>PRK02119 hypothetical protein; Provisional
Probab=92.17 E-value=2.5 Score=28.39 Aligned_cols=11 Identities=27% Similarity=0.721 Sum_probs=7.8
Q ss_pred CCCCCCCCCCC
Q psy9793 107 SNTSPDEIPPH 117 (133)
Q Consensus 107 ~~~~~~~~~~~ 117 (133)
.....+++|||
T Consensus 62 ~~~~~e~~PPH 72 (73)
T PRK02119 62 ASQAEETPPPH 72 (73)
T ss_pred CCCCCCCCcCC
Confidence 34556779999
No 6
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=91.42 E-value=1.7 Score=28.66 Aligned_cols=40 Identities=20% Similarity=0.355 Sum_probs=12.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhh----h-cCCCCCCCCCCCCCC
Q psy9793 78 GESIGEELQVGHVCKRRIEHLKEH----S-GNVLSNTSPDEIPPH 117 (133)
Q Consensus 78 ~~~~~eE~~~~~r~k~Rl~hL~el----~-~~~~~~~~~~~~~~~ 117 (133)
++.+-+....+++++.++.+|.+- . .........++.|||
T Consensus 24 n~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~~~~~~~~~~~~~PPH 68 (69)
T PF04102_consen 24 NDVVTEQQRQIDRLQRQLRLLRERLRELEDPSGSADPPEEEPPPH 68 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCcCC
Confidence 334444445566666666666542 2 112355678889998
No 7
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=90.67 E-value=5.6 Score=29.61 Aligned_cols=79 Identities=11% Similarity=0.119 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q psy9793 20 NKKFRAVQKTIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAGESIGEELQVGHVCKRRIEHLK 99 (133)
Q Consensus 20 rKnFR~~QK~IEkE~~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKRKL~~~~~eE~~~~~r~k~Rl~hL~ 99 (133)
.-.|+...+.+=+.+..-...+..|..++-+-+.+.+ +-.+.|..|-..++...+.+.+.+.+=...+.+++..|..+.
T Consensus 64 ~~~~~~~~~elA~dIi~kakqIe~LIdsLPg~~~see-~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~i~~ia 142 (144)
T PF11221_consen 64 PEEFEENIKELATDIIRKAKQIEYLIDSLPGIEVSEE-EQLKRIKELEEENEEAEEELQEAVKEAEELLKQVQELIREIA 142 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSSS-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3578888888888888888888888887765445666 888999999999999999999999999999999999887664
No 8
>PRK00736 hypothetical protein; Provisional
Probab=90.59 E-value=2.8 Score=27.67 Aligned_cols=9 Identities=44% Similarity=0.840 Sum_probs=6.8
Q ss_pred CCCCCCCCC
Q psy9793 109 TSPDEIPPH 117 (133)
Q Consensus 109 ~~~~~~~~~ 117 (133)
.+.++.|||
T Consensus 59 ~~~~~~PPH 67 (68)
T PRK00736 59 DVPVTKPPH 67 (68)
T ss_pred CCCCCCcCC
Confidence 446888998
No 9
>PRK00295 hypothetical protein; Provisional
Probab=90.42 E-value=3.7 Score=27.14 Aligned_cols=11 Identities=27% Similarity=0.610 Sum_probs=8.0
Q ss_pred CCCCCCCCCCC
Q psy9793 107 SNTSPDEIPPH 117 (133)
Q Consensus 107 ~~~~~~~~~~~ 117 (133)
.....++.|||
T Consensus 57 ~~~~~e~~PPH 67 (68)
T PRK00295 57 GSFEEEAPPPH 67 (68)
T ss_pred CCCCCCCCcCC
Confidence 44556789999
No 10
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=90.32 E-value=4.1 Score=27.55 Aligned_cols=33 Identities=15% Similarity=0.261 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Q psy9793 64 GGMFERLQALKRKAGESIGEELQVGHVCKRRIEHLKE 100 (133)
Q Consensus 64 d~lI~rl~~LKRKL~~~~~eE~~~~~r~k~Rl~hL~e 100 (133)
+..+.|+..+|+++....+. ++.++.|+..|++
T Consensus 60 ~~y~~KL~~ikkrm~~l~~~----l~~lk~R~~~L~q 92 (92)
T PF14712_consen 60 DPYVKKLVNIKKRMSNLHER----LQKLKKRADKLQQ 92 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhcC
Confidence 44889999999999888764 8889999988864
No 11
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=87.65 E-value=8 Score=29.30 Aligned_cols=49 Identities=10% Similarity=0.179 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHH---HHHHHHHHHHHhhhhcCCC
Q psy9793 58 EVTRLLGGMFERLQALKRKAGESIGEELQV---GHVCKRRIEHLKEHSGNVL 106 (133)
Q Consensus 58 ~a~~~Ld~lI~rl~~LKRKL~~~~~eE~~~---~~r~k~Rl~hL~el~~~~~ 106 (133)
+.......+-++-..|...-+++..++..+ .+.|.+||.||.+++....
T Consensus 32 ~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~itr 83 (157)
T PF04136_consen 32 ELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKLQYFEELDPITR 83 (157)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHH
Confidence 456667777788888888888888887554 8899999999999976433
No 12
>PRK00846 hypothetical protein; Provisional
Probab=81.19 E-value=15 Score=25.13 Aligned_cols=32 Identities=22% Similarity=0.405 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHh----hhhcCCCCCCCCCCCCCC
Q psy9793 86 QVGHVCKRRIEHLK----EHSGNVLSNTSPDEIPPH 117 (133)
Q Consensus 86 ~~~~r~k~Rl~hL~----el~~~~~~~~~~~~~~~~ 117 (133)
..+++++..+.+|. +..+...+..+.+.-|||
T Consensus 41 ~~I~~L~~ql~~L~~rL~~~~~s~~~~~~dE~PPPH 76 (77)
T PRK00846 41 LTGARNAELIRHLLEDLGKVRSTLFADPADEPPPPH 76 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCcCC
Confidence 33444444444333 333333333333447777
No 13
>PF05508 Ran-binding: RanGTP-binding protein; InterPro: IPR008812 The small Ras-like GTPase Ran plays an essential role in the transport of macromolecules in and out of the nucleus and has been implicated in spindle and nuclear envelope formation during mitosis in higher eukaryotes. The Saccharomyces cerevisiae ORF YGL164c encoding a novel RanGTP-binding protein, termed Yrb30p was identified. The protein competes with S. cerevisiae RanBP1 (Yrb1p) for binding to the GTP-bound form of S. cerevisiae Ran (Gsp1p) and is, like Yrb1p, able to form trimeric complexes with RanGTP and some of the karyopherins [].
Probab=75.12 E-value=48 Score=28.16 Aligned_cols=68 Identities=15% Similarity=0.233 Sum_probs=55.0
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy9793 13 KVPYEILNKKFRAVQKTIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAGESIG 82 (133)
Q Consensus 13 kVPyElLrKnFR~~QK~IEkE~~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKRKL~~~~~ 82 (133)
+||-+.- +..+..|+.+|.-+.-|+.++.-++-....|+..-+ .++...++|-.-++.|-+++++...
T Consensus 38 ~ip~~~~-~~l~~lq~~L~~kI~IvspAIDLIel~aaRGNt~Le-sal~L~~~L~~eI~~f~~~l~~~~~ 105 (302)
T PF05508_consen 38 KIPDKDR-KELEKLQRRLESKIKIVSPAIDLIELIAARGNTSLE-SALPLTKDLRREIDSFDERLEEAAE 105 (302)
T ss_pred hCCHHHH-HHHHHHHHHHHhhhhccccHHHHHHHHHhcCCccHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666665 788899999998888888887766554444566677 8999999999999999999999888
No 14
>PRK11637 AmiB activator; Provisional
Probab=74.01 E-value=34 Score=29.43 Aligned_cols=42 Identities=5% Similarity=0.079 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Q psy9793 59 VTRLLGGMFERLQALKRKAGESIGEELQVGHVCKRRIEHLKE 100 (133)
Q Consensus 59 a~~~Ld~lI~rl~~LKRKL~~~~~eE~~~~~r~k~Rl~hL~e 100 (133)
.-..|+.+-.++..+++.+.+...+-......++.|+..+-.
T Consensus 94 ~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 94 TQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555555545555555556555544
No 15
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=71.63 E-value=63 Score=27.49 Aligned_cols=44 Identities=16% Similarity=0.162 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhh
Q psy9793 58 EVTRLLGGMFERLQALKRKAGESIGEELQVGHVCKRRIEHLKEH 101 (133)
Q Consensus 58 ~a~~~Ld~lI~rl~~LKRKL~~~~~eE~~~~~r~k~Rl~hL~el 101 (133)
+|+..|++=-++...|||.-.-...=...++--+++=|.||-.-
T Consensus 215 EAmeiL~aRqkkAeeLkrltd~A~~MsE~Ql~ELRadIK~fvs~ 258 (302)
T PF07139_consen 215 EAMEILDARQKKAEELKRLTDRASQMSEEQLAELRADIKHFVSE 258 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhh
Confidence 79999999999999999999999988888999999999999754
No 16
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=71.31 E-value=50 Score=30.29 Aligned_cols=78 Identities=18% Similarity=0.239 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhh
Q psy9793 23 FRAVQKTIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAGESIGEELQVGHVCKRRIEHLKEHS 102 (133)
Q Consensus 23 FR~~QK~IEkE~~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKRKL~~~~~eE~~~~~r~k~Rl~hL~el~ 102 (133)
|..+...++--...+.....++...+++-+.++ ..+..+..=+..+..|+||-...+++=..+.+.++.+++.|...+
T Consensus 264 l~~~~~~l~ea~~~l~ea~~el~~~~~~le~Dp--~~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L~~~~ 341 (557)
T COG0497 264 LSELAELLEEALYELEEASEELRAYLDELEFDP--NRLEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQLDNSE 341 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhh
Confidence 444455555555566666666666555433333 367777777888888999998888888888888888888887543
No 17
>PF05120 GvpG: Gas vesicle protein G ; InterPro: IPR007804 Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea. They are permeable to ambient gases by diffusion and provide buoyancy, enabling cells to move upwards in water to access oxygen and/or light. Proteins containing this family are involved in the formation of gas vesicles [].
Probab=71.19 E-value=30 Score=23.67 Aligned_cols=62 Identities=19% Similarity=0.319 Sum_probs=50.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q psy9793 14 VPYEILNKKFRAVQKTIDREV---SYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRK 76 (133)
Q Consensus 14 VPyElLrKnFR~~QK~IEkE~---~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKRK 76 (133)
-|+-.+-..++.++...|+|. ..|...+.++.-.+..|.++.+ +-...=+.++.|++.+++.
T Consensus 7 aPvrgv~wv~e~I~~~Ae~E~~Dp~~i~~~L~~L~~~~e~GEIsee-Ef~~~E~eLL~rL~~~~~~ 71 (79)
T PF05120_consen 7 APVRGVVWVAEQIQEQAERELYDPAAIRRELAELQEALEAGEISEE-EFERREDELLDRLEEARRR 71 (79)
T ss_pred chHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHHHHHHHHH
Confidence 688888889999999999975 5677777777777877788888 7888888899998888763
No 18
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=70.33 E-value=49 Score=25.75 Aligned_cols=86 Identities=20% Similarity=0.239 Sum_probs=53.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CC--CCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy9793 14 VPYEILNKKFRAVQKTIDREVSYVQSAANELEKTIA----SS--EKPPLTEVTRLLGGMFERLQALKRKAGESIGEELQV 87 (133)
Q Consensus 14 VPyElLrKnFR~~QK~IEkE~~~v~~~~~eL~k~l~----~~--~~~~~~~a~~~Ld~lI~rl~~LKRKL~~~~~eE~~~ 87 (133)
-|++..++..+...++ .+++..+...+.++...+. +. ..... ..++.+..+-..+..|+..++......-..
T Consensus 59 Fps~~~~~~~~~~~~l-~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~-~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~ 136 (188)
T PF03962_consen 59 FPSQAKQKRQNKLEKL-QKEIEELEKKIEELEEKIEEAKKGREESEERE-ELLEELEELKKELKELKKELEKYSENDPEK 136 (188)
T ss_pred cChHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 4666666555444333 3355555555555554432 11 12233 678888999999999999999777666666
Q ss_pred HHHHHHHHHHHhhh
Q psy9793 88 GHVCKRRIEHLKEH 101 (133)
Q Consensus 88 ~~r~k~Rl~hL~el 101 (133)
++.++..+..+.+.
T Consensus 137 i~~~~~~~~~~~~~ 150 (188)
T PF03962_consen 137 IEKLKEEIKIAKEA 150 (188)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777766666554
No 19
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=69.62 E-value=4.4 Score=25.98 Aligned_cols=43 Identities=12% Similarity=0.284 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy9793 36 YVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAGESIG 82 (133)
Q Consensus 36 ~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKRKL~~~~~ 82 (133)
.|.+.+.++...+.. .+ + .++.++|.|-+|++.|++-+.++..
T Consensus 7 ~v~~lL~qmq~kFq~--mS-~-~I~~riDeM~~RIDdLE~si~dl~~ 49 (54)
T PF06825_consen 7 FVQNLLQQMQDKFQT--MS-D-QILGRIDEMSSRIDDLEKSIADLMT 49 (54)
T ss_dssp HHHHHHHHHHHHHHH--HH-H-HHHHHHHHHHHHHHCCHHHH-----
T ss_pred HHHHHHHHHHHHHHH--HH-H-HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 455556666665431 11 2 6888999999999998888877654
No 20
>PF05713 MobC: Bacterial mobilisation protein (MobC); InterPro: IPR008687 This family consists of several bacterial MobC-like, mobilisation proteins. MobC proteins belong to the group of relaxases. Together with MobA and MobB they bind to a single cis-active site of a mobilising plasmid, the origin of transfer (oriT) region []. The absence of MobC has several different effects on oriT DNA. Site- and strand-specific nicking by MobA protein is severely reduced, accounting for the lower frequency of mobilisation. The localised DNA strand separation required for this nicking is less affected, but becomes more sensitive to the level of active DNA gyrase in the cell. In addition, strand separation is not efficiently extended through the region containing the nick site. These effects suggest a model in which MobC acts as a molecular wedge for the relaxosome-induced melting of oriT DNA. The effect of MobC on strand separation may be partially complemented by the helical distortion induced by supercoiling. However, MobC extends the melted region through the nick site, thus providing the single-stranded substrate required for cleavage by MobA [].
Probab=69.33 E-value=22 Score=21.40 Aligned_cols=20 Identities=25% Similarity=0.391 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHhcCC
Q psy9793 32 REVSYVQSAANELEKTIASS 51 (133)
Q Consensus 32 kE~~~v~~~~~eL~k~l~~~ 51 (133)
+|+..+.+-++++++.++.+
T Consensus 3 reL~~ignNlNQiAk~~N~~ 22 (48)
T PF05713_consen 3 RELNRIGNNLNQIAKHANSG 22 (48)
T ss_pred HHHHHHhccHHHHHHHHhCC
Confidence 68889999999999988763
No 21
>KOG3088|consensus
Probab=69.16 E-value=22 Score=30.30 Aligned_cols=32 Identities=16% Similarity=0.287 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy9793 58 EVTRLLGGMFERLQALKRKAGESIGEELQVGH 89 (133)
Q Consensus 58 ~a~~~Ld~lI~rl~~LKRKL~~~~~eE~~~~~ 89 (133)
+...+=.+|.+|-++|+||.+++-..|.++..
T Consensus 61 ~~~~kq~eL~~rqeEL~Rke~ELdRREr~~a~ 92 (313)
T KOG3088|consen 61 DLAKKQAELLKKQEELRRKEQELDRRERALAR 92 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Confidence 44445678888999999999888887766544
No 22
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=68.18 E-value=47 Score=24.64 Aligned_cols=30 Identities=7% Similarity=0.265 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy9793 20 NKKFRAVQKTIDREVSYVQSAANELEKTIA 49 (133)
Q Consensus 20 rKnFR~~QK~IEkE~~~v~~~~~eL~k~l~ 49 (133)
||++..+=..|-+.+.+|..+++..++.+.
T Consensus 38 rr~m~~A~~~v~kql~~vs~~l~~tKkhLs 67 (126)
T PF07889_consen 38 RRSMSDAVASVSKQLEQVSESLSSTKKHLS 67 (126)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999988887654
No 23
>PF07303 Occludin_ELL: Occludin homology domain; InterPro: IPR010844 This represents a conserved region approximately 100 residues long within eukaryotic occludin proteins and the RNA polymerase II elongation factor ELL. Occludin is an integral membrane protein that localises to tight junctions [], while ELL is an elongation factor that can increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by polymerase at multiple sites along the DNA []. This shared domain is thought to mediate protein interactions [].; PDB: 1WPA_A 3G7C_A 1XAW_A.
Probab=68.15 E-value=40 Score=23.84 Aligned_cols=71 Identities=15% Similarity=0.206 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhh
Q psy9793 28 KTIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAGESIGEELQVGHVCKRRIEHLKEH 101 (133)
Q Consensus 28 K~IEkE~~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKRKL~~~~~eE~~~~~r~k~Rl~hL~el 101 (133)
+.+-.++..|...+.+|...|..-..+.. --..+..|+..-+.+| |-.-...++..-..-+..-|.|++.+
T Consensus 25 k~L~~~v~~v~~~f~~L~~~l~~l~~~s~--ey~~i~~I~~eY~k~K-k~~p~y~~~K~Rc~yL~~KL~HIK~~ 95 (101)
T PF07303_consen 25 KELHAEVDAVSRRFQELDSELKRLPPGSQ--EYKRIAQILQEYNKKK-KRDPNYQEKKKRCEYLHNKLSHIKQL 95 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS-TTSH--HHHHHH---HHHHHHH-HTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCc--HHHHHHHHHHHHHHHH-hcCccHHHHHHHHHHHHHHHHHHHHH
Confidence 34555777788888888777653222222 3344447777777766 56677777777788888888888865
No 24
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=67.98 E-value=63 Score=26.11 Aligned_cols=87 Identities=16% Similarity=0.212 Sum_probs=50.6
Q ss_pred cccHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcCCC-CCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy9793 13 KVPYEILNKKFRAVQ--KTIDREVSYVQSAANELEKTIASSE-KPPLTEVTRLLGGMFERLQALKRKAGESIGEELQVGH 89 (133)
Q Consensus 13 kVPyElLrKnFR~~Q--K~IEkE~~~v~~~~~eL~k~l~~~~-~~~~~~a~~~Ld~lI~rl~~LKRKL~~~~~eE~~~~~ 89 (133)
..+||.+++.|++.. ..+.+=+..+...+.++...+..+. ..........++.+-..++.++..-.....+..-.+.
T Consensus 192 ~~~y~~l~~~f~~~~~l~~~~~~l~~~a~~l~~ia~ai~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~ 271 (284)
T PF12805_consen 192 HYDYEELREQFKHSDVLFRFQRLLEQLAQALRQIAQAILRGRPYHHRNRLKRALEALEESLEFLRQQDQPENREALLALR 271 (284)
T ss_pred cccHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHhcCccCHHHHHHHH
Confidence 568999999998443 3455556666666667766655432 2222145555666666666666552223334445566
Q ss_pred HHHHHHHHHh
Q psy9793 90 VCKRRIEHLK 99 (133)
Q Consensus 90 r~k~Rl~hL~ 99 (133)
.+-.+++++.
T Consensus 272 ~l~~~l~~i~ 281 (284)
T PF12805_consen 272 NLLDNLRNID 281 (284)
T ss_pred HHHHHHHHHH
Confidence 6766666654
No 25
>PF10157 DUF2365: Uncharacterized conserved protein (DUF2365); InterPro: IPR019314 This entry is found in a highly conserved family of proteins which have no known function.
Probab=67.17 E-value=45 Score=25.39 Aligned_cols=74 Identities=15% Similarity=0.214 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC---------------CCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy9793 26 VQKTIDREVSYVQSAANELEKTIASS---------------EKPPLTEVTRLLGGMFERLQALKRKAGESIGEELQVGHV 90 (133)
Q Consensus 26 ~QK~IEkE~~~v~~~~~eL~k~l~~~---------------~~~~~~~a~~~Ld~lI~rl~~LKRKL~~~~~eE~~~~~r 90 (133)
+=..||++...+..++..+-..+.+. .-+.+ .+...+|.-|+.+..|-.|.+++- +++..+..
T Consensus 53 ~L~~LE~~a~~ia~svd~ll~~L~~~L~~mS~~Tv~~~~~y~~sv~-~~cdsvD~sik~~y~liakceELn-~~M~~v~~ 130 (149)
T PF10157_consen 53 VLHDLERDAQAIAESVDSLLRSLRSSLHSMSAITVEHMETYKDSVD-KLCDSVDASIKSMYTLIAKCEELN-ESMKPVYK 130 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 44567777777777777665543211 01123 445556777777777777766653 45666667
Q ss_pred HHHHHHHHhhh
Q psy9793 91 CKRRIEHLKEH 101 (133)
Q Consensus 91 ~k~Rl~hL~el 101 (133)
+.++|..++.+
T Consensus 131 La~qIK~Ik~~ 141 (149)
T PF10157_consen 131 LAQQIKDIKKL 141 (149)
T ss_pred HHHHHHHHHHH
Confidence 77777766653
No 26
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=66.88 E-value=98 Score=27.87 Aligned_cols=84 Identities=17% Similarity=0.232 Sum_probs=51.9
Q ss_pred ccHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q psy9793 14 VPYEILNKKFRAVQKT--------------IDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAGE 79 (133)
Q Consensus 14 VPyElLrKnFR~~QK~--------------IEkE~~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKRKL~~ 79 (133)
.=++.|+..||..+|. ||+.+..+...+++.....++| +.. .|...|+.+-..+..|+..+++
T Consensus 140 ~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~~f~~l~~~G--d~~-~A~e~l~~l~~~~~~l~~~~~~ 216 (569)
T PRK04778 140 EEVEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEFSQFVELTESG--DYV-EAREILDQLEEELAALEQIMEE 216 (569)
T ss_pred HHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHhcCC--CHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777776665 5667777777777776666655 334 6777888888888888888877
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q psy9793 80 SIGEELQVGHVCKRRIEHLKE 100 (133)
Q Consensus 80 ~~~eE~~~~~r~k~Rl~hL~e 100 (133)
.=.--.++-..+=..|+.|+.
T Consensus 217 iP~l~~~~~~~~P~ql~el~~ 237 (569)
T PRK04778 217 IPELLKELQTELPDQLQELKA 237 (569)
T ss_pred HHHHHHHHHHHhhHHHHHHHH
Confidence 643322333333334444443
No 27
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=64.47 E-value=38 Score=22.25 Aligned_cols=30 Identities=30% Similarity=0.346 Sum_probs=17.5
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhh
Q psy9793 72 ALKRKAGESIGEELQVGHVCKRRIEHLKEH 101 (133)
Q Consensus 72 ~LKRKL~~~~~eE~~~~~r~k~Rl~hL~el 101 (133)
.++++++....+=......|+.||+-|+.-
T Consensus 42 ~~~~el~~l~~~i~~~~~~~~~~lk~l~~~ 71 (103)
T PF00804_consen 42 ELKRELDELTDEIKQLFQKIKKRLKQLSKD 71 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555566666666666654
No 28
>KOG4360|consensus
Probab=64.03 E-value=39 Score=30.99 Aligned_cols=105 Identities=15% Similarity=0.113 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----------CCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy9793 19 LNKKFRAVQKTIDREVSYVQSAANELEKTIAS----------SEKPPLTEVTRLLGGMFERLQALKRKAGESIGEELQVG 88 (133)
Q Consensus 19 LrKnFR~~QK~IEkE~~~v~~~~~eL~k~l~~----------~~~~~~~~a~~~Ld~lI~rl~~LKRKL~~~~~eE~~~~ 88 (133)
+|-..+..|+.|+.-++.+.....++.+.++. =...++ +....|..++.+=+.+...+.+..+.+.+.+
T Consensus 210 tN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Eke-el~~~Lq~~~da~~ql~aE~~EleDkyAE~m 288 (596)
T KOG4360|consen 210 TNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKE-ELDEHLQAYKDAQRQLTAELEELEDKYAECM 288 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 34455566666665444444444444443321 012233 5667777788887777777777777777766
Q ss_pred HHHHHHHHHHhhhhcCCCCCCCCCCCCCCCCCCCCC
Q psy9793 89 HVCKRRIEHLKEHSGNVLSNTSPDEIPPHNTPFPPC 124 (133)
Q Consensus 89 ~r~k~Rl~hL~el~~~~~~~~~~~~~~~~~~~~~~~ 124 (133)
+....==+-|+.+.+.+.-..+-++.-.|..-||+=
T Consensus 289 ~~~~EaeeELk~lrs~~~p~~~s~~~~~~~~~fp~~ 324 (596)
T KOG4360|consen 289 QMLHEAEEELKCLRSCDAPKLISQEALSHGHHFPQL 324 (596)
T ss_pred HHHHHHHHHHHhhccCCCcchhHHHHHHhhhhCChh
Confidence 666666666677766666666666666666666653
No 29
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=63.49 E-value=54 Score=30.12 Aligned_cols=61 Identities=26% Similarity=0.356 Sum_probs=47.8
Q ss_pred cccHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy9793 13 KVPYEILNKKFRAVQKTI---DREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAGESI 81 (133)
Q Consensus 13 kVPyElLrKnFR~~QK~I---EkE~~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKRKL~~~~ 81 (133)
.+||-.|..++..+++.+ +++-..++..+..|.+-- - .|...+..+.+++...||.|+.+.
T Consensus 374 ~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdE-------l-~Are~l~~~~~~l~eikR~mek~n 437 (570)
T COG4477 374 EVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDE-------L-EARENLERLKSKLHEIKRYMEKSN 437 (570)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-------H-HHHHHHHHHHHHHHHHHHHHHHcC
Confidence 689999999999888765 456666777777766531 1 688899999999999999998764
No 30
>cd00238 ERp29c ERp29 and ERp38, C-terminal domain; composed of the protein disulfide isomerase (PDI)-like proteins ERp29 and ERp38. ERp29 (also called ERp28) is a ubiquitous endoplasmic reticulum (ER)-resident protein expressed in high levels in secretory cells. It contains a redox inactive TRX-like domain at the N-terminus. The expression profile of ERp29 suggests a role in secretory protein production, distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex and is essential in regulating the secretion of thyroglobulin. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase. ERp38 is a P5-like protein, first isolated from alfalfa (the cDNA clone was named G1), which contains two redox active TRX domains at the N-terminus, like human P5.
Probab=62.77 E-value=31 Score=23.96 Aligned_cols=41 Identities=22% Similarity=0.387 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHH
Q psy9793 28 KTIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQAL 73 (133)
Q Consensus 28 K~IEkE~~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~L 73 (133)
|.+++....+.+.++-|.+.+.++.+++ .+.|.|..|+..|
T Consensus 50 Ki~~kg~~yv~~E~~RL~~iL~~~~ls~-----~K~del~~R~NIL 90 (93)
T cd00238 50 KILEKGEDYVEKELARLERLLEKKGLAP-----EKADELTRRLNIL 90 (93)
T ss_pred HHHHcchhHHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHH
Confidence 3444455555555555555554432222 2455555555544
No 31
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=62.72 E-value=95 Score=27.81 Aligned_cols=44 Identities=25% Similarity=0.385 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhh
Q psy9793 58 EVTRLLGGMFERLQALKRKAGESIGEELQVGHVCKRRIEHLKEH 101 (133)
Q Consensus 58 ~a~~~Ld~lI~rl~~LKRKL~~~~~eE~~~~~r~k~Rl~hL~el 101 (133)
..+..+..=+..++.++||-....++=....+.++.+++.+...
T Consensus 301 ~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~ 344 (563)
T TIGR00634 301 ERLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDS 344 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 46777777788888888888877776677777777777766543
No 32
>PF07749 ERp29: Endoplasmic reticulum protein ERp29, C-terminal domain; InterPro: IPR011679 ERp29 is a ubiquitously expressed endoplasmic reticulum protein found in mammals []. This protein is found associated with an N-terminal thioredoxin-like domain (IPR006662 from INTERPRO), which is homologous to the domain of human protein disulphide isomerase (PDI). ERp29 may help mediate the chaperone function of PDI. The C-terminal Erp29 domain has a 5-helical bundle fold. ERp29 is thought to form part of the thyroglobulin folding complex []. ; GO: 0005783 endoplasmic reticulum; PDB: 2QC7_B 1G7D_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_A.
Probab=62.39 E-value=28 Score=24.13 Aligned_cols=47 Identities=19% Similarity=0.357 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHH
Q psy9793 22 KFRAVQKTIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALK 74 (133)
Q Consensus 22 nFR~~QK~IEkE~~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LK 74 (133)
-.|...|.+++.-..|.+.++-|.+.+.+ .+++ .+.|.|..|+..|+
T Consensus 46 Yvkvm~Ki~~~g~~fv~~E~~RL~~lL~~-~l~~-----~K~del~~R~NIL~ 92 (95)
T PF07749_consen 46 YVKVMEKIIEKGEEFVAKEIARLERLLEG-KLSP-----EKKDELQKRLNILS 92 (95)
T ss_dssp HHHHHHHHHHSGTHHHHHHHHHHHHHHHS-SS-H-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHHhc-cCCH-----HHHHHHHHHHHHHH
Confidence 34556677777777788888888777773 3433 47778888777664
No 33
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=61.45 E-value=32 Score=21.19 Aligned_cols=18 Identities=22% Similarity=0.512 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy9793 82 GEELQVGHVCKRRIEHLK 99 (133)
Q Consensus 82 ~eE~~~~~r~k~Rl~hL~ 99 (133)
.+-..+++.|+.+|+..+
T Consensus 30 eeg~~l~~~c~~~L~~~e 47 (53)
T PF02609_consen 30 EEGMELIKKCQERLEEAE 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344556777777777654
No 34
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=61.16 E-value=91 Score=28.05 Aligned_cols=86 Identities=19% Similarity=0.269 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCC-----CCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy9793 16 YEILNKKFRAVQKTIDREVSYVQSAANELEKT-IASS-----EKPPLTEVTRLLGGMFERLQALKRKAGESIGEELQVGH 89 (133)
Q Consensus 16 yElLrKnFR~~QK~IEkE~~~v~~~~~eL~k~-l~~~-----~~~~~~~a~~~Ld~lI~rl~~LKRKL~~~~~eE~~~~~ 89 (133)
.|..++.+..-...++.--..+...+..|... +... ....+ ..-..|.=+=+++++|++++++...++.+...
T Consensus 90 le~~~~~~~ek~~~l~~~~~~L~~~F~~LA~~ile~k~~~f~~~~~~-~l~~ll~Pl~e~l~~f~~~v~~~~~~~~~~~~ 168 (475)
T PRK10361 90 MEAAQQHADDKIRQMINSEQRLSEQFENLANRIFEHSNRRVDEQNRQ-SLNSLLSPLREQLDGFRRQVQDSFGKEAQERH 168 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555445555555555432 1110 01112 33344555567899999999999999999999
Q ss_pred HHHHHHHHHhhhh
Q psy9793 90 VCKRRIEHLKEHS 102 (133)
Q Consensus 90 r~k~Rl~hL~el~ 102 (133)
.++.-|.+|.++.
T Consensus 169 ~L~~qi~~L~~~n 181 (475)
T PRK10361 169 TLAHEIRNLQQLN 181 (475)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998764
No 35
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=61.15 E-value=1.3e+02 Score=27.21 Aligned_cols=81 Identities=20% Similarity=0.341 Sum_probs=51.8
Q ss_pred cccHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHH-----HHH
Q psy9793 13 KVPYEILNKKFRAVQKTIDR---EVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAGESI-----GEE 84 (133)
Q Consensus 13 kVPyElLrKnFR~~QK~IEk---E~~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKRKL~~~~-----~eE 84 (133)
.+||-.+...++...+.++. +...+...+..|.+. +..|.+.|..+-..|...||+++... +.-
T Consensus 371 ~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~d--------E~~Ar~~l~~~~~~l~~ikR~lek~nLPGlp~~y 442 (560)
T PF06160_consen 371 QVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKD--------EKEAREKLQKLKQKLREIKRRLEKSNLPGLPEDY 442 (560)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHH
Confidence 56788887777777665542 333333333333321 22688888888888888888888764 344
Q ss_pred HHHHHHHHHHHHHHhhh
Q psy9793 85 LQVGHVCKRRIEHLKEH 101 (133)
Q Consensus 85 ~~~~~r~k~Rl~hL~el 101 (133)
...+......|+++...
T Consensus 443 ~~~~~~~~~~i~~l~~~ 459 (560)
T PF06160_consen 443 LDYFFDVSDEIEELSDE 459 (560)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55677777777777654
No 36
>PF14966 DNA_repr_REX1B: DNA repair REX1-B
Probab=60.67 E-value=40 Score=23.64 Aligned_cols=48 Identities=17% Similarity=0.258 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHH
Q psy9793 22 KFRAVQKTIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKR 75 (133)
Q Consensus 22 nFR~~QK~IEkE~~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKR 75 (133)
.|++.=+.|..+.+.++..+.++.+.+.+. .+.. .+..+|..||..+|
T Consensus 37 ~y~~~~~~iT~~f~~~S~ei~~ie~~L~~~-~~~~-----~la~~i~~lQ~~Ek 84 (97)
T PF14966_consen 37 AYRQLCHEITQEFSAISKEILAIEAELRDE-HERP-----DLAELIRELQEQEK 84 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cCCH-----HHHHHHHHHHHHHH
Confidence 466666779999999999999999888642 2223 45666777776544
No 37
>PF10079 DUF2317: Uncharacterized protein conserved in bacteria (DUF2317); InterPro: IPR011199 Members of this protein family include BshC, which is an enzyme required for bacillithiol biosynthesis and described as a cysteine-adding enzyme. Bacillithiol is a low-molecular-weight thiol, an analog of glutathione and mycothiol, and is found largely in the Firmicutes.
Probab=59.26 E-value=87 Score=28.41 Aligned_cols=70 Identities=13% Similarity=0.169 Sum_probs=40.7
Q ss_pred ccHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy9793 14 VPYEILNKKFRA------VQKTIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAGESIGE 83 (133)
Q Consensus 14 VPyElLrKnFR~------~QK~IEkE~~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKRKL~~~~~e 83 (133)
=+.+.+++.+-. ....++.....+...+..|...+..-+.+-...+-+....+.++++.|++|+.+....
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~l~~~~~~l~~~~~~~d~tl~~~~e~~~~~~~~ql~~Le~k~~~a~~r 481 (542)
T PF10079_consen 406 DGEELLKERWLEEQDPSEIEDDFEEEKEQLEAQFEPLKEKAAKIDPTLEGLVEKNESKILKQLDYLEKKLLKAEKR 481 (542)
T ss_pred ccHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666621 2233444444455544444443322122222267788899999999999999887754
No 38
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=58.72 E-value=1e+02 Score=26.53 Aligned_cols=46 Identities=13% Similarity=0.107 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhh
Q psy9793 56 LTEVTRLLGGMFERLQALKRKAGESIGEELQVGHVCKRRIEHLKEH 101 (133)
Q Consensus 56 ~~~a~~~Ld~lI~rl~~LKRKL~~~~~eE~~~~~r~k~Rl~hL~el 101 (133)
++-+-..|..++...+..+++|.+....-.+.-..+..|-..|+++
T Consensus 261 Ek~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~I 306 (359)
T PF10498_consen 261 EKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEI 306 (359)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3355667778888888888888887777766666666666666555
No 39
>PRK10780 periplasmic chaperone; Provisional
Probab=58.32 E-value=76 Score=23.75 Aligned_cols=85 Identities=16% Similarity=0.178 Sum_probs=42.1
Q ss_pred cCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhh----HHHHH
Q psy9793 9 HPTLKVPYEILNKKFRAVQKTIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAGE----SIGEE 84 (133)
Q Consensus 9 ~p~lkVPyElLrKnFR~~QK~IEkE~~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKRKL~~----~~~eE 84 (133)
+|.++.=-..|.+-|...|.-+++....+.....++.+. ++..+.+ +....-..+..+.+.|.++.+. ....+
T Consensus 38 ~p~~k~~~~~le~~~~~~q~el~~~~~elq~~~~~~q~~--~~~ms~~-~~~~~~~el~~~~~~~q~~~~~~qq~~~~~~ 114 (165)
T PRK10780 38 VPQRTGVSKQLENEFKGRASELQRMETDLQAKMQKLQRD--GSTMKGS-DRTKLEKDVMAQRQTFSQKAQAFEQDRRRRS 114 (165)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccccCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334555555555555555555555555555443 1234444 4444444555555666666653 23334
Q ss_pred HHHHHHHHHHHH
Q psy9793 85 LQVGHVCKRRIE 96 (133)
Q Consensus 85 ~~~~~r~k~Rl~ 96 (133)
.+..+-+..+|.
T Consensus 115 ~e~~~~i~~ki~ 126 (165)
T PRK10780 115 NEERNKILTRIQ 126 (165)
T ss_pred HHHHHHHHHHHH
Confidence 444555555554
No 40
>PF07011 DUF1313: Protein of unknown function (DUF1313); InterPro: IPR009741 This family consists of several hypothetical plant proteins of around 100 residues in length. The function of this family is unknown.
Probab=58.22 E-value=62 Score=22.71 Aligned_cols=62 Identities=19% Similarity=0.297 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q psy9793 16 YEILNKKFRAVQKTIDREVSYVQSAANELEKT-IASSEKPPLTEVTRLLGGMFERLQALKRKAGE 79 (133)
Q Consensus 16 yElLrKnFR~~QK~IEkE~~~v~~~~~eL~k~-l~~~~~~~~~~a~~~Ld~lI~rl~~LKRKL~~ 79 (133)
.+.+.|.|+++|-.+|+.-.-++. +++-..+ .-. +++.....+..|+.=|.||-.|=.-|..
T Consensus 8 ~~tf~~sF~qVQ~iLDqNR~LI~e-INqNHeSr~Pd-nL~RNV~LIrELN~NI~rVv~lY~dLs~ 70 (87)
T PF07011_consen 8 WQTFQKSFVQVQSILDQNRLLINE-INQNHESRIPD-NLSRNVGLIRELNGNISRVVDLYSDLSS 70 (87)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHH-HhhcccccCCc-hhhHhHHHHHHHHhhHHHHHHHHHHHhH
Confidence 357899999999999987655444 4433221 111 2333335667777777777666555543
No 41
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=57.10 E-value=56 Score=21.84 Aligned_cols=56 Identities=11% Similarity=0.237 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q psy9793 23 FRAVQKTIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAGE 79 (133)
Q Consensus 23 FR~~QK~IEkE~~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKRKL~~ 79 (133)
|-..|+..++....-..+++++..-++....... ..-+.++.+..+|..|-++++.
T Consensus 12 le~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a-~L~~qv~~Ls~qv~~Ls~ql~r 67 (70)
T PF04899_consen 12 LEELQQSYEKQQQEWQSSYADLQHMFEQTSQENA-ALSEQVNNLSQQVQRLSEQLER 67 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 4444555555555555555555554321101111 4556677777777777666654
No 42
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=56.64 E-value=74 Score=23.07 Aligned_cols=87 Identities=22% Similarity=0.275 Sum_probs=46.2
Q ss_pred ccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHH---HHhhHH-HH
Q psy9793 8 EHPTLKVPYEILNKKFRAVQKTIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKR---KAGESI-GE 83 (133)
Q Consensus 8 E~p~lkVPyElLrKnFR~~QK~IEkE~~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKR---KL~~~~-~e 83 (133)
++|..+---+.|++.|...|+.++.....+.....++.+... ..+.+ +..+.-..+-.+.+.|++ .+..-. .+
T Consensus 30 ~~~~~k~~~~~l~~~~~~~~~~l~~~~~el~~~~~~l~~~~~--~ls~~-~~~~~~~~l~~~~~~l~~~~~~~~~~l~~~ 106 (158)
T PF03938_consen 30 ESPAGKDAQAKLQEKFKALQKELQAKQKELQKLQQKLQSQKA--TLSEE-ERQKRQQELQQKEQELQQFQQQAQQQLQQE 106 (158)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS------SSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555667777777777777666666666555544321 34444 444444444444444444 333332 34
Q ss_pred HHHHHHHHHHHHHH
Q psy9793 84 ELQVGHVCKRRIEH 97 (133)
Q Consensus 84 E~~~~~r~k~Rl~h 97 (133)
+...+..+..+|..
T Consensus 107 ~~~~~~~i~~~i~~ 120 (158)
T PF03938_consen 107 EQELLQPIQKKINK 120 (158)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45566777666654
No 43
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=55.88 E-value=45 Score=20.33 Aligned_cols=17 Identities=12% Similarity=0.413 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy9793 29 TIDREVSYVQSAANELE 45 (133)
Q Consensus 29 ~IEkE~~~v~~~~~eL~ 45 (133)
++|++-..+......|.
T Consensus 2 QlE~Dy~~LK~~yd~Lk 18 (45)
T PF02183_consen 2 QLERDYDALKASYDSLK 18 (45)
T ss_pred chHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 44
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=55.81 E-value=1.2e+02 Score=25.28 Aligned_cols=40 Identities=13% Similarity=0.181 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhc
Q psy9793 64 GGMFERLQALKRKAGESIGEELQVGHVCKRRIEHLKEHSG 103 (133)
Q Consensus 64 d~lI~rl~~LKRKL~~~~~eE~~~~~r~k~Rl~hL~el~~ 103 (133)
..+...+..+++..++...-...-+.+++++++.|+.+..
T Consensus 254 ~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~~~g 293 (325)
T PF08317_consen 254 QELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALEKLTG 293 (325)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHC
Confidence 3333333444444443333334446777778777777643
No 45
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.52 E-value=63 Score=21.93 Aligned_cols=22 Identities=27% Similarity=0.584 Sum_probs=12.0
Q ss_pred HHHhhhhcCCCCCCCCCCCCCC
Q psy9793 96 EHLKEHSGNVLSNTSPDEIPPH 117 (133)
Q Consensus 96 ~hL~el~~~~~~~~~~~~~~~~ 117 (133)
+-|+++.+..-+..+..+.|||
T Consensus 50 ~kl~~~~~~~~~~~~~etpPPH 71 (72)
T COG2900 50 EKLKDLQPSAIASPAEETPPPH 71 (72)
T ss_pred HHHHhhcccccCCCcccCCCCC
Confidence 3344455444444455577888
No 46
>KOG3564|consensus
Probab=55.33 E-value=1.6e+02 Score=27.02 Aligned_cols=77 Identities=9% Similarity=0.071 Sum_probs=49.5
Q ss_pred ccHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy9793 14 VPYEILNKKFRAVQKTIDR---EVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAGESIGEELQVGHV 90 (133)
Q Consensus 14 VPyElLrKnFR~~QK~IEk---E~~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKRKL~~~~~eE~~~~~r 90 (133)
.-|+.|+|-|....+.-.+ |+....+.+....+.++.=+..-. .+...||..|++=+.+|--++..-..++.+-+.
T Consensus 28 ~ef~rl~k~fed~~ek~~r~~ae~~~~~~~L~Ka~tk~~~ldvklk-ha~~~vda~ik~rr~ae~d~~~~E~~i~~i~d~ 106 (604)
T KOG3564|consen 28 DEFIRLRKDFEDFEEKWKRTDAELGKYKDLLAKAETKRSALDVKLK-HARNQVDAEIKRRRRAEADCEKLETQIQLIKDM 106 (604)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhccchHH-HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3477889999888877655 666666666555544432122333 788999999998777776666555555444444
Q ss_pred H
Q psy9793 91 C 91 (133)
Q Consensus 91 ~ 91 (133)
+
T Consensus 107 l 107 (604)
T KOG3564|consen 107 L 107 (604)
T ss_pred H
Confidence 3
No 47
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=54.87 E-value=86 Score=24.96 Aligned_cols=52 Identities=13% Similarity=0.226 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy9793 23 FRAVQKTIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAGESI 81 (133)
Q Consensus 23 FR~~QK~IEkE~~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKRKL~~~~ 81 (133)
++..|+.++..+..+...+........ + ..-..++.|..++..|...+.+-.
T Consensus 61 ~~~lq~~~e~~i~~~~~~v~~~~~~~~------~-~~~~~l~~L~~ri~~L~~~i~ee~ 112 (247)
T PF06705_consen 61 NKKLQSKFEEQINNMQERVENQISEKQ------E-QLQSRLDSLNDRIEALEEEIQEEK 112 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------H-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555554443322111 1 344566666666666655555443
No 48
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=54.47 E-value=67 Score=21.93 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHH
Q psy9793 58 EVTRLLGGMFERLQALKRKAGESIG 82 (133)
Q Consensus 58 ~a~~~Ld~lI~rl~~LKRKL~~~~~ 82 (133)
++-+-|+.+-+|++.||.|+...+.
T Consensus 61 ~mK~DLd~i~krir~lk~kl~~~yP 85 (88)
T PF10241_consen 61 EMKKDLDYIFKRIRSLKAKLAKQYP 85 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4555666666666666666665543
No 49
>PF09432 THP2: Tho complex subunit THP2; InterPro: IPR018557 The THO complex plays a role in coupling transcription elongation to mRNA export. It is composed of subunits THP2, HPR1, THO2 and MFT1 [].
Probab=54.33 E-value=53 Score=24.74 Aligned_cols=47 Identities=17% Similarity=0.284 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHh
Q psy9793 25 AVQKTIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAG 78 (133)
Q Consensus 25 ~~QK~IEkE~~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKRKL~ 78 (133)
..-+.+.+|++.-...-..++..|-|+ .-..+.+|+..++.||.++.
T Consensus 85 ~tL~~LtkEVn~Wr~ewd~iE~~mFGD-------~pnSmkkMl~nveslk~~lt 131 (132)
T PF09432_consen 85 DTLNQLTKEVNYWRKEWDNIEMLMFGD-------GPNSMKKMLQNVESLKSKLT 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC-------ChHHHHHHHHHHHHHHHHhc
Confidence 344556667777777777776666553 23577889999999998875
No 50
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=54.12 E-value=55 Score=20.80 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q psy9793 58 EVTRLLGGMFERLQALKRKAGE 79 (133)
Q Consensus 58 ~a~~~Ld~lI~rl~~LKRKL~~ 79 (133)
.+...++.|-.+.+.|...+.+
T Consensus 77 ~i~~~~~~l~~~w~~l~~~~~~ 98 (105)
T PF00435_consen 77 EIQEKLEELNQRWEALCELVEE 98 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666555544433
No 51
>smart00030 CLb CLUSTERIN Beta chain.
Probab=53.73 E-value=1.2e+02 Score=24.52 Aligned_cols=37 Identities=16% Similarity=0.197 Sum_probs=33.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy9793 14 VPYEILNKKFRAVQKTIDREVSYVQSAANELEKTIAS 50 (133)
Q Consensus 14 VPyElLrKnFR~~QK~IEkE~~~v~~~~~eL~k~l~~ 50 (133)
+|-+.|+.--....|.|++|+......+++++..|..
T Consensus 4 ~~~~~Lk~lS~~G~kyvd~EI~nAl~GvKqMK~~mer 40 (206)
T smart00030 4 VSDNELQEMSTQGSKYINKEIKNALKGVKQIKTLIEK 40 (206)
T ss_pred CChhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778899999999999999999999999999888753
No 52
>smart00150 SPEC Spectrin repeats.
Probab=53.42 E-value=56 Score=20.72 Aligned_cols=21 Identities=33% Similarity=0.371 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q psy9793 58 EVTRLLGGMFERLQALKRKAG 78 (133)
Q Consensus 58 ~a~~~Ld~lI~rl~~LKRKL~ 78 (133)
.+...++.|-.+-+.|...+.
T Consensus 74 ~i~~~~~~l~~~w~~l~~~~~ 94 (101)
T smart00150 74 EIEERLEELNERWEELKELAE 94 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555544443
No 53
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=53.35 E-value=40 Score=23.88 Aligned_cols=64 Identities=8% Similarity=0.002 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCCCCCCCCCC
Q psy9793 59 VTRLLGGMFERLQALKRKAGESIGEELQVGHVCKRRIEHLKEHSGNVLSNTSPDEIPPHNTPFP 122 (133)
Q Consensus 59 a~~~Ld~lI~rl~~LKRKL~~~~~eE~~~~~r~k~Rl~hL~el~~~~~~~~~~~~~~~~~~~~~ 122 (133)
+.+.++.+-.+-+.|++.++...+...-+=...|.++.+.+.-+-.-.=....+.-+|.|||-|
T Consensus 39 ~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR~~Lg~vk~gEivy~~~~~~~~~~~~~~~~~ 102 (105)
T PRK00888 39 QQQTNAKLKARNDQLFAEIDDLKGGQEAIEERARNELGMVKPGETFYRIVPDASKRAAAAGQPP 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHcCCCCCCCEEEEeCCCCcCCCCCCCCCC
Confidence 3344444555555555555555443322223444455555543331111111244566666644
No 54
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=52.56 E-value=70 Score=22.16 Aligned_cols=24 Identities=17% Similarity=0.212 Sum_probs=9.1
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHH
Q psy9793 12 LKVPYEILNKKFRAVQKTIDREVS 35 (133)
Q Consensus 12 lkVPyElLrKnFR~~QK~IEkE~~ 35 (133)
++.|.+.+......-...++.++.
T Consensus 57 v~~~~~ea~~~Le~~~e~le~~i~ 80 (105)
T cd00632 57 VKQEKEEARTELKERLETIELRIK 80 (105)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHH
Confidence 333444443333333333333333
No 55
>PHA01750 hypothetical protein
Probab=52.44 E-value=70 Score=21.58 Aligned_cols=18 Identities=17% Similarity=0.279 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy9793 62 LLGGMFERLQALKRKAGE 79 (133)
Q Consensus 62 ~Ld~lI~rl~~LKRKL~~ 79 (133)
+.|.+-+++..+|||+++
T Consensus 57 kqDnl~~qv~eik~k~dk 74 (75)
T PHA01750 57 KQDELSRQVEEIKRKLDK 74 (75)
T ss_pred hHHHHHHHHHHHHHhhcc
Confidence 345566667777777653
No 56
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=52.20 E-value=61 Score=20.83 Aligned_cols=55 Identities=18% Similarity=0.265 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-ChHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy9793 25 AVQKTIDREVSYVQSAANELEKTIASSEKP-PLTEVTRLLGGMFERLQALKRKAGESI 81 (133)
Q Consensus 25 ~~QK~IEkE~~~v~~~~~eL~k~l~~~~~~-~~~~a~~~Ld~lI~rl~~LKRKL~~~~ 81 (133)
..++.|++|..-..++ ..+.+.+++++.. .. .+...|...-.+++-|+.+|++..
T Consensus 5 ~L~~~i~~E~ki~~Ga-e~m~~~~~t~~~~~~~-~~~~~l~~s~~kI~~L~~~L~~l~ 60 (70)
T PF02185_consen 5 ELQKKIDKELKIKEGA-ENMLQAYSTDKKKVLS-EAESQLRESNQKIELLREQLEKLQ 60 (70)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHCCHHCH-HH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHccCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888876664 4444443322222 23 566666666666666666665543
No 57
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=51.90 E-value=1e+02 Score=23.30 Aligned_cols=79 Identities=11% Similarity=0.096 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q psy9793 20 NKKFRAVQKTIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAGESIGEELQVGHVCKRRIEHLK 99 (133)
Q Consensus 20 rKnFR~~QK~IEkE~~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKRKL~~~~~eE~~~~~r~k~Rl~hL~ 99 (133)
.+.++.....++.....+...+..+...+....++.. .+...+....++++...+||...-..-...+.-+..-+..++
T Consensus 105 ~~~l~~~~~~~~~~~~~~~~~~~~vsdiv~~~~~~~~-~~~~~~~~~~~~l~~~lekL~~fd~~~~~~~~~~~~~~~~l~ 183 (204)
T PF04740_consen 105 KKKLNQLKEQIEDLQDEINSILSSVSDIVSLPKPSSS-SFIDSLEKAKKKLQETLEKLRAFDQQSSSIFSEIEELLQALQ 183 (204)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccchHHHHhhccchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3555555555555555554444444433322222333 444555555555555555555544433334444444444433
No 58
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=51.67 E-value=84 Score=28.28 Aligned_cols=53 Identities=13% Similarity=0.097 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q psy9793 22 KFRAVQKTIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKA 77 (133)
Q Consensus 22 nFR~~QK~IEkE~~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKRKL 77 (133)
.|.-.+-.|+.++..+.+.+.+....+.+. .-+ .+-+.++.+-.+++.|-..|
T Consensus 246 gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l--~l~-~~~~~~~~i~~~Id~Lyd~l 298 (569)
T PRK04778 246 GYHLDHLDIEKEIQDLKEQIDENLALLEEL--DLD-EAEEKNEEIQERIDQLYDIL 298 (569)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHhc--ChH-HHHHHHHHHHHHHHHHHHHH
Confidence 333344456777777777777655555432 333 44455555555544443333
No 59
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=51.28 E-value=85 Score=28.31 Aligned_cols=54 Identities=15% Similarity=0.095 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHh
Q psy9793 22 KFRAVQKTIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAG 78 (133)
Q Consensus 22 nFR~~QK~IEkE~~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKRKL~ 78 (133)
.|.-.+-.|+.++..+...+.++...+... .-+ .+-..++.+-.+++.|=..|+
T Consensus 242 gy~l~~~~i~~~i~~i~~~l~~~~~~L~~l--~l~-~~~~~~~~i~~~Id~lYd~le 295 (560)
T PF06160_consen 242 GYYLEHLDIEEEIEQIEEQLEEALALLKNL--ELD-EVEEENEEIEERIDQLYDILE 295 (560)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHcC--CHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 333344456667777777776666666532 334 455555555555555444443
No 60
>KOG1510|consensus
Probab=51.25 E-value=1.1e+02 Score=23.31 Aligned_cols=75 Identities=7% Similarity=0.093 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhh
Q psy9793 27 QKTIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAGESIGEELQVGHVCKRRIEHLKEHS 102 (133)
Q Consensus 27 QK~IEkE~~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKRKL~~~~~eE~~~~~r~k~Rl~hL~el~ 102 (133)
.+.+-..+..-.+.+..|..++-+.+.+.+ .-+++|..+-.+.++-..-+++.+.+-...+..+.++|+-+.+..
T Consensus 58 ~~~laa~i~~~akqId~LIdsLP~~~~~~e-~Ql~~i~kLq~en~e~~~el~~~v~~~e~Ll~~vq~~le~~a~~~ 132 (139)
T KOG1510|consen 58 AQLLAADIAKKAKQIDTLIDSLPGEEGSAE-AQLEKIKKLQEENEEVALELEELVSKGEKLLEQVQSLLEDIADLQ 132 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444445455544444555 777889999899999999999999888899999999998877653
No 61
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=51.18 E-value=76 Score=26.75 Aligned_cols=43 Identities=12% Similarity=0.139 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhc
Q psy9793 61 RLLGGMFERLQALKRKAGESIGEELQVGHVCKRRIEHLKEHSG 103 (133)
Q Consensus 61 ~~Ld~lI~rl~~LKRKL~~~~~eE~~~~~r~k~Rl~hL~el~~ 103 (133)
+....+.+.+..+++.+++...-...-+.+++++++.|+.+..
T Consensus 246 ~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~l~g 288 (312)
T smart00787 246 NKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQSLTG 288 (312)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC
Confidence 3344444444444444444444444557788888888888764
No 62
>PLN02372 violaxanthin de-epoxidase
Probab=49.89 E-value=1.9e+02 Score=25.90 Aligned_cols=80 Identities=20% Similarity=0.192 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHH--HHHHHHHHHHHH----hhHHHHHHHHHH
Q psy9793 16 YEILNKKFRAVQKTIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGG--MFERLQALKRKA----GESIGEELQVGH 89 (133)
Q Consensus 16 yElLrKnFR~~QK~IEkE~~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~--lI~rl~~LKRKL----~~~~~eE~~~~~ 89 (133)
.|-|-|......|.|.||+..+...+.+-...+.. .....++. +.+.+..|+..+ .++..+|+++++
T Consensus 363 ~~~l~~~~e~~e~~i~~e~~~~~~e~~~~v~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~f~~~lskee~~~l~ 435 (455)
T PLN02372 363 LERLEKDVEEGEKTIVKEARQIEEELEKEVEKLGK-------EEESLFKRVALEEGLKELEQDEENFLKELSKEEKELLE 435 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 56677888888899999966655555432222211 23333333 566666665544 466788999999
Q ss_pred HHHHHHHHHhhhh
Q psy9793 90 VCKRRIEHLKEHS 102 (133)
Q Consensus 90 r~k~Rl~hL~el~ 102 (133)
.++.++.-.+.+-
T Consensus 436 ~~~~~~~~vek~f 448 (455)
T PLN02372 436 KLKMEASEVEKLF 448 (455)
T ss_pred HHHHHHHHHHHHh
Confidence 9999888776553
No 63
>cd00446 GrpE GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases. The GrpE dimer binds to the ATPase domain of Hsp70 catalyzing the dissociation of ADP, which enables rebinding of ATP, one step in the Hsp70 reaction cycle in protein folding. In eukaryotes, only the mitochondrial Hsp70, not the cytosolic form, is GrpE dependent.
Probab=48.92 E-value=1e+02 Score=22.35 Aligned_cols=20 Identities=15% Similarity=0.302 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHhhH
Q psy9793 61 RLLGGMFERLQALKRKAGES 80 (133)
Q Consensus 61 ~~Ld~lI~rl~~LKRKL~~~ 80 (133)
..+.+++.=++.|+|-++..
T Consensus 36 ~~~~~ll~v~D~le~a~~~~ 55 (137)
T cd00446 36 KFAKDLLPVLDNLERALEAA 55 (137)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 44555555566666665544
No 64
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=46.98 E-value=1.1e+02 Score=22.16 Aligned_cols=79 Identities=19% Similarity=0.153 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHh-------hHHHHHHHHHH
Q psy9793 17 EILNKKFRAVQKTIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAG-------ESIGEELQVGH 89 (133)
Q Consensus 17 ElLrKnFR~~QK~IEkE~~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKRKL~-------~~~~eE~~~~~ 89 (133)
+...+..+.+|...|+|+..-...+..|...-.. .. ..-..+..+-..++..+..|. .--..=..-+.
T Consensus 34 ~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e----~~-~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~ 108 (132)
T PF07926_consen 34 ESQAKIAQEAQQKYERELVKHAEDIKELQQLREE----LQ-ELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELS 108 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH----HH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4566788899999999998888877777654110 01 223333333333333333333 33333334467
Q ss_pred HHHHHHHHHhh
Q psy9793 90 VCKRRIEHLKE 100 (133)
Q Consensus 90 r~k~Rl~hL~e 100 (133)
-++.|++=|..
T Consensus 109 ~~~~r~~dL~~ 119 (132)
T PF07926_consen 109 ELEQRIEDLNE 119 (132)
T ss_pred HHHHHHHHHHH
Confidence 78888887764
No 65
>PF11902 DUF3422: Protein of unknown function (DUF3422); InterPro: IPR021830 This family of proteins are functionally uncharacterised. This protein is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 426 to 444 amino acids in length.
Probab=46.14 E-value=2e+02 Score=25.46 Aligned_cols=68 Identities=21% Similarity=0.261 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhh
Q psy9793 33 EVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAGESIGEELQVGHVCKRRIEHLKEH 101 (133)
Q Consensus 33 E~~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKRKL~~~~~eE~~~~~r~k~Rl~hL~el 101 (133)
++..+...+.++...+.+++.+.+ ..+..|..+-.++..+-..-...-..-.-+.+-...||+-|.+-
T Consensus 217 ~L~~~E~~L~~l~~~~~~~~~~~~-~LL~~Lt~LAa~vE~~~a~t~~RF~As~AY~~iV~~RL~eLrE~ 284 (420)
T PF11902_consen 217 ELSELEQRLAALTQRMASSEDTDD-ELLDELTRLAAEVEALAARTSYRFSASRAYYEIVEQRLAELREE 284 (420)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhccc
Confidence 344555555666666655433334 56666666666666666665555556667788888888888764
No 66
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=45.63 E-value=38 Score=24.38 Aligned_cols=29 Identities=24% Similarity=0.259 Sum_probs=0.0
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9793 11 TLKVPYEILNKKFRAVQKTIDREVSYVQS 39 (133)
Q Consensus 11 ~lkVPyElLrKnFR~~QK~IEkE~~~v~~ 39 (133)
.=.+|.|.|++-.+...+.+..++-.+.+
T Consensus 23 ~~~~~Le~L~~dL~~~~~~L~~~Li~lIN 51 (133)
T PF06148_consen 23 RRYVSLEDLRKDLRSYSKELKNELIELIN 51 (133)
T ss_dssp -----------------------------
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33689999999999999999988766543
No 67
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=45.36 E-value=1.3e+02 Score=22.49 Aligned_cols=29 Identities=14% Similarity=0.130 Sum_probs=19.6
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy9793 53 KPPLTEVTRLLGGMFERLQALKRKAGESIG 82 (133)
Q Consensus 53 ~~~~~~a~~~Ld~lI~rl~~LKRKL~~~~~ 82 (133)
++.+ ++...+..+-..+..++.||+.+..
T Consensus 109 ~t~~-el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 109 PTNE-ELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred CCHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555 6777777777777777776666553
No 68
>cd04770 HTH_HMRTR Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=45.17 E-value=1.1e+02 Score=21.53 Aligned_cols=29 Identities=14% Similarity=0.138 Sum_probs=15.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Q psy9793 71 QALKRKAGESIGEELQVGHVCKRRIEHLKE 100 (133)
Q Consensus 71 ~~LKRKL~~~~~eE~~~~~r~k~Rl~hL~e 100 (133)
..|++++++. +++...++.++.+|+++.+
T Consensus 82 ~~l~~~~~~l-~~~i~~l~~~~~~l~~~~~ 110 (123)
T cd04770 82 ALLEEKLAEV-EAKIAELQALRAELAGLLS 110 (123)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 3344444333 3344446777777777653
No 69
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=45.14 E-value=1.2e+02 Score=22.11 Aligned_cols=51 Identities=16% Similarity=0.241 Sum_probs=33.4
Q ss_pred cCCCCCChHHHHHHHHHHHHHHHH--------HHHHHhhHHHHHHHH----HHHHHHHHHHHhh
Q psy9793 49 ASSEKPPLTEVTRLLGGMFERLQA--------LKRKAGESIGEELQV----GHVCKRRIEHLKE 100 (133)
Q Consensus 49 ~~~~~~~~~~a~~~Ld~lI~rl~~--------LKRKL~~~~~eE~~~----~~r~k~Rl~hL~e 100 (133)
..|..+.+ ++.+.++.|+++.+. ..|+++...+.+... .+..+.||+-|.+
T Consensus 35 kkGeln~e-Eak~~vddl~~q~k~~~~e~e~K~~r~i~~ml~~~~~~r~~~~~~l~~rvd~Ler 97 (108)
T COG3937 35 KKGELNAE-EAKRFVDDLLRQAKEAQGELEEKIPRKIEEMLSDLEVARQSEMDELTERVDALER 97 (108)
T ss_pred HcCCCCHH-HHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHhhccccccchHHHHHHHHHHHHH
Confidence 34578888 999999999998874 445666665555422 2555666666553
No 70
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=45.03 E-value=1.7e+02 Score=27.56 Aligned_cols=12 Identities=25% Similarity=0.268 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHh
Q psy9793 88 GHVCKRRIEHLK 99 (133)
Q Consensus 88 ~~r~k~Rl~hL~ 99 (133)
+++++..+++|+
T Consensus 641 L~~~~~~l~~l~ 652 (717)
T PF10168_consen 641 LERMKDQLQDLK 652 (717)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 71
>PRK13456 DNA protection protein DPS; Provisional
Probab=44.86 E-value=1.6e+02 Score=23.37 Aligned_cols=47 Identities=17% Similarity=0.092 Sum_probs=35.6
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhcCCCC------CCCCCCCCCC
Q psy9793 71 QALKRKAGESIGEELQVGHVCKRRIEHLKEHSGNVLS------NTSPDEIPPH 117 (133)
Q Consensus 71 ~~LKRKL~~~~~eE~~~~~r~k~Rl~hL~el~~~~~~------~~~~~~~~~~ 117 (133)
.+++.-+++...+|....+.+..||.-|-.--.+++. +|+.-+.|..
T Consensus 52 e~V~e~le~a~~EEl~HA~~lAeRI~qLGG~P~~~p~~~~~ls~~~~~~~p~d 104 (186)
T PRK13456 52 EGLKEIAEDARLEDRNHFEALVPRIYELGGKLPRDIREFHDISACPDAYLPEN 104 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHhhhhcCccccCCCC
Confidence 3566778888889999999999999998766555555 6666666554
No 72
>PF01383 CpcD: CpcD/allophycocyanin linker domain; InterPro: IPR008213 Ferredoxin-NADP(+) oxydoreductase (FNR) (EC=1.18.1.2) transfers electrons from ferredoxin (or flavodoxin) to NADP(+) to generate NADPH. In eucaryotes, the nuclear-encoded, chloroplast-targeted enzyme contains two domains: an FAD-binding domain (see PDOC51384 from PROSITEDOC) and an NADP(+)-binding domain. With the exception of Gloeobacter violaceus PCC 7421, the predicted sequences of all cyanobacterial petH genes, encoding FNR, correspond to a protein containing three domains. Two domains at the C terminus correspond to the FAD- and NADP(+)-binding domains of higher plants FNR protein, which compose the catalytic domains of the enzyme. The N-terminal domain is similar to phycobilisome (PBS)-associated linker proteins from numerous cyanobacteria [, , ] and is associated with: - CpcD, the phycocyanin (PC)-associated, rod-capping, linker polypeptide of PBS. The similarity spans nearly the entire sequence of this linker class. - CpcC, the PC-associated rod linker polypeptide. The similarity is confined only to the C terminus of this linker class. - ApcC, the allophycocyanin (APC)-associated, core linker polypeptide. The similarity only correspond to about half of the molecule. The CpcD-like domain has an elongated shape and consists of a three-stranded beta-sheet, two alpha-helices, one of which has only about one turn, and the connecting random coil segments [].; GO: 0030089 phycobilisome; PDB: 1B33_O.
Probab=44.09 E-value=17 Score=23.03 Aligned_cols=18 Identities=22% Similarity=0.593 Sum_probs=14.9
Q ss_pred ccccHHHHHHHHHHHHHH
Q psy9793 12 LKVPYEILNKKFRAVQKT 29 (133)
Q Consensus 12 lkVPyElLrKnFR~~QK~ 29 (133)
+-|||+.|+..++..|+.
T Consensus 29 ~~Vpy~~ls~~~q~I~r~ 46 (56)
T PF01383_consen 29 YVVPYSQLSQEMQRINRQ 46 (56)
T ss_dssp EEEEHHHHHHHHHHHHHC
T ss_pred EEEcHHHhHHHHHHHHHC
Confidence 349999999999888763
No 73
>COG3880 Modulator of heat shock repressor CtsR, McsA [Signal transduction mechanisms]
Probab=43.94 E-value=91 Score=24.55 Aligned_cols=41 Identities=27% Similarity=0.335 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHhhhhcCC
Q psy9793 65 GMFERLQALKRKAGESI-GEELQVGHVCKRRIEHLKEHSGNV 105 (133)
Q Consensus 65 ~lI~rl~~LKRKL~~~~-~eE~~~~~r~k~Rl~hL~el~~~~ 105 (133)
.+-.++..|+..|++.+ .||-+....+|--|.+|+.-...+
T Consensus 133 ~~~~~I~~L~e~Lq~~i~~EefEeAA~iRDqIr~Lk~k~~~d 174 (176)
T COG3880 133 NPKRKIIALKEALQDLIEREEFEEAAVIRDQIRALKAKNGGD 174 (176)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 34567888999999988 566788999999999998764433
No 74
>PRK10869 recombination and repair protein; Provisional
Probab=43.12 E-value=2.5e+02 Score=25.30 Aligned_cols=43 Identities=19% Similarity=0.051 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Q psy9793 58 EVTRLLGGMFERLQALKRKAGESIGEELQVGHVCKRRIEHLKE 100 (133)
Q Consensus 58 ~a~~~Ld~lI~rl~~LKRKL~~~~~eE~~~~~r~k~Rl~hL~e 100 (133)
..+..+..=+..++.||||-...+++=....+.++.+++-|..
T Consensus 296 ~~l~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~~ 338 (553)
T PRK10869 296 NRLAELEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQLDD 338 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhC
Confidence 3566666667777777777775555555555555555555443
No 75
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=42.93 E-value=1.2e+02 Score=21.63 Aligned_cols=43 Identities=26% Similarity=0.509 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHH---HHHHHHHHHHHhh
Q psy9793 58 EVTRLLGGMFERLQALKRKAGESIGEELQV---GHVCKRRIEHLKE 100 (133)
Q Consensus 58 ~a~~~Ld~lI~rl~~LKRKL~~~~~eE~~~---~~r~k~Rl~hL~e 100 (133)
..-..|..|...|..||..+.++..|-..+ -+.++.||..+..
T Consensus 12 ~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 12 QLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344677888889999999999998876555 5677778877766
No 76
>KOG3230|consensus
Probab=42.85 E-value=1.8e+02 Score=23.59 Aligned_cols=63 Identities=21% Similarity=0.375 Sum_probs=38.6
Q ss_pred cccHHHHHHHHHH---HHHHHHHHHHHHHH----HHHHHHHHhcCCCCCChHHHHHH-------HHHHHHHHHHHHHHHh
Q psy9793 13 KVPYEILNKKFRA---VQKTIDREVSYVQS----AANELEKTIASSEKPPLTEVTRL-------LGGMFERLQALKRKAG 78 (133)
Q Consensus 13 kVPyElLrKnFR~---~QK~IEkE~~~v~~----~~~eL~k~l~~~~~~~~~~a~~~-------Ld~lI~rl~~LKRKL~ 78 (133)
..|-|+||+|-|. +++-+|||...+.- .++++++....|.. .+++- +...|+++++.|..++
T Consensus 8 ~tp~e~Lr~nqRal~~a~ReleRer~~le~qeKklvaeIKk~AK~gq~----~A~KimAkdLvRtR~~i~kf~~~kaqiq 83 (224)
T KOG3230|consen 8 KTPAELLRENQRALNKATRELERERQKLELQEKKLVAEIKKTAKQGQM----DAVKIMAKDLVRTRRYIKKFQNMKAQIQ 83 (224)
T ss_pred CCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999886 45668888877653 56677665544322 33333 3445555555554444
Q ss_pred h
Q psy9793 79 E 79 (133)
Q Consensus 79 ~ 79 (133)
-
T Consensus 84 a 84 (224)
T KOG3230|consen 84 A 84 (224)
T ss_pred H
Confidence 3
No 77
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=42.21 E-value=1.1e+02 Score=20.84 Aligned_cols=53 Identities=25% Similarity=0.358 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhH
Q psy9793 23 FRAVQKTIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAGES 80 (133)
Q Consensus 23 FR~~QK~IEkE~~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKRKL~~~ 80 (133)
.|..-|.++--+.+++..+..+...+. ... +.-++||++-.++..+..++.+.
T Consensus 9 Ir~dIk~vd~KVdaLq~~V~~l~~~~~----~v~-~l~~klDa~~~~l~~l~~~V~~I 61 (75)
T PF05531_consen 9 IRQDIKAVDDKVDALQTQVDDLESNLP----DVT-ELNKKLDAQSAQLTTLNTKVNEI 61 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC----chH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566677777777777777765432 223 56666777766666666554443
No 78
>cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle.
Probab=42.08 E-value=1.8e+02 Score=23.42 Aligned_cols=42 Identities=14% Similarity=0.173 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q psy9793 58 EVTRLLGGMFERLQALKRKAGESIGEELQVGHVCKRRIEHLK 99 (133)
Q Consensus 58 ~a~~~Ld~lI~rl~~LKRKL~~~~~eE~~~~~r~k~Rl~hL~ 99 (133)
++...+..+++.=...-+-|.+.++.+..++.+|..-+.-|+
T Consensus 185 ~a~~~M~~i~~~~~~~~~~L~~lv~AQl~Yh~q~~e~L~~l~ 226 (229)
T cd07594 185 ITKLLLEGISSTHANHLRCLRDFVEAQMTYYAQCYQYMDDLQ 226 (229)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444443333445567777777777777776666554
No 79
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=41.65 E-value=1.2e+02 Score=21.05 Aligned_cols=74 Identities=16% Similarity=0.168 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHH------HHHHHHHHHHHH
Q psy9793 20 NKKFRAVQKTIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAGESI------GEELQVGHVCKR 93 (133)
Q Consensus 20 rKnFR~~QK~IEkE~~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKRKL~~~~------~eE~~~~~r~k~ 93 (133)
.+-|-.+-+.|+-|+......++-|.+. +. .+..+..+|-..+.++.+.+++.- ......++.|..
T Consensus 2 ~~~f~~~~~~v~~el~~t~~d~~LLe~m-N~-------~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~ 73 (99)
T PF10046_consen 2 ERMFSKVSKYVESELEATNEDYNLLENM-NK-------ATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEE 73 (99)
T ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHH-HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4668888899999999888888877653 11 223333333333333333333332 233444666666
Q ss_pred HHHHHhhh
Q psy9793 94 RIEHLKEH 101 (133)
Q Consensus 94 Rl~hL~el 101 (133)
.+..|.+.
T Consensus 74 ~V~~LE~~ 81 (99)
T PF10046_consen 74 QVTELEQT 81 (99)
T ss_pred HHHHHHHH
Confidence 77766653
No 80
>PF11026 DUF2721: Protein of unknown function (DUF2721); InterPro: IPR021279 This family is conserved in bacteria. The function is not known.
Probab=41.48 E-value=60 Score=23.65 Aligned_cols=42 Identities=19% Similarity=0.340 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHH----HHHHHHHHHHHHHHhh
Q psy9793 59 VTRLLGGMFERLQALKRKAGESIGEE----LQVGHVCKRRIEHLKE 100 (133)
Q Consensus 59 a~~~Ld~lI~rl~~LKRKL~~~~~eE----~~~~~r~k~Rl~hL~e 100 (133)
....+..++.|.+.|.++.++..+++ ...++.++.|...++.
T Consensus 19 ~tnRl~ri~dR~R~L~~~~~~~~~~~~~~~~~el~~L~rR~~li~~ 64 (130)
T PF11026_consen 19 LTNRLARIVDRIRQLHDELRDAPDEEERRLRRELRILRRRARLIRR 64 (130)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHHHHHH
Confidence 45678888999999998888765555 4678888889888764
No 81
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=40.93 E-value=62 Score=21.74 Aligned_cols=15 Identities=7% Similarity=0.607 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHh
Q psy9793 85 LQVGHVCKRRIEHLK 99 (133)
Q Consensus 85 ~~~~~r~k~Rl~hL~ 99 (133)
..++..|+.+|+.-+
T Consensus 40 ~~L~k~c~~~L~~ae 54 (75)
T PRK14064 40 IELTKLCQDKLQSAE 54 (75)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444555666555544
No 82
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=40.83 E-value=77 Score=22.61 Aligned_cols=29 Identities=31% Similarity=0.329 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy9793 68 ERLQALKRKAGESIGEELQVGHVCKRRIE 96 (133)
Q Consensus 68 ~rl~~LKRKL~~~~~eE~~~~~r~k~Rl~ 96 (133)
++|..||.||.+-+....+.++.+...|+
T Consensus 72 EqL~~Lk~kl~~e~~~~~k~i~~le~~I~ 100 (100)
T PF04568_consen 72 EQLKKLKEKLKEEIEHHRKEIDELEKHIE 100 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 56778888888876666666666665553
No 83
>PF07586 HXXSHH: Protein of unknown function (DUF1552); InterPro: IPR011447 This is a family of proteins identified in Rhodopirellula baltica.
Probab=40.76 E-value=1.4e+02 Score=24.36 Aligned_cols=12 Identities=17% Similarity=0.401 Sum_probs=8.2
Q ss_pred cccHHHHHHHHH
Q psy9793 13 KVPYEILNKKFR 24 (133)
Q Consensus 13 kVPyElLrKnFR 24 (133)
.=|.+..++-|.
T Consensus 133 ~~P~~~f~~LFg 144 (302)
T PF07586_consen 133 NNPRAAFDRLFG 144 (302)
T ss_pred CCHHHHHHHHhC
Confidence 346777777774
No 84
>PF14431 YwqJ-deaminase: YwqJ-like deaminase
Probab=40.37 E-value=16 Score=26.59 Aligned_cols=15 Identities=33% Similarity=0.636 Sum_probs=12.8
Q ss_pred CCCCCCCCCCCCCcc
Q psy9793 113 EIPPHNTPFPPCPAT 127 (133)
Q Consensus 113 ~~~~~~~~~~~~~~~ 127 (133)
--|.|..++|||+..
T Consensus 102 ~~~~~G~~~~pC~nC 116 (125)
T PF14431_consen 102 GDPEHGKYAPPCRNC 116 (125)
T ss_pred cCCCCCCCCCCCchH
Confidence 578999999999864
No 85
>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.
Probab=40.28 E-value=71 Score=18.14 Aligned_cols=32 Identities=22% Similarity=0.393 Sum_probs=21.2
Q ss_pred HHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHhh
Q psy9793 69 RLQALKRKAGESIG-EELQVGHVCKRRIEHLKE 100 (133)
Q Consensus 69 rl~~LKRKL~~~~~-eE~~~~~r~k~Rl~hL~e 100 (133)
.+..|++++...+. ++-+-...++.+|..|+.
T Consensus 3 ~i~~l~~~m~~a~~~~dfE~Aa~~Rd~i~~l~~ 35 (36)
T PF02151_consen 3 LIKELEEKMEEAVENEDFEKAARLRDQIKALKK 35 (36)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHc
Confidence 45666777777664 346667788888877763
No 86
>PF07373 CAMP_factor: CAMP factor (Cfa); InterPro: IPR010860 This family consists of several bacterial CAMP factor (Cfa) proteins, which seem to be specific to Streptococcus species. The CAMP reaction is a synergistic lysis of erythrocytes by the interaction of an extracellular protein (CAMP factor) produced by some streptococcal species with the Staphylococcus aureus sphingomyelinase C (beta-toxin) [].
Probab=40.19 E-value=1.5e+02 Score=24.28 Aligned_cols=67 Identities=15% Similarity=0.139 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH--HHHHHHHHHHHhhhh
Q psy9793 33 EVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAGESIGEELQV--GHVCKRRIEHLKEHS 102 (133)
Q Consensus 33 E~~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKRKL~~~~~eE~~~--~~r~k~Rl~hL~el~ 102 (133)
+...|...+++|.....+ .... +..+.++.+++....|+-.|+....-...+ +..|-.|++-|-...
T Consensus 20 ~~~~vn~~i~~L~~~q~~--v~~~-~~~~~I~~ll~ta~~l~~~l~~~~~G~~~~ydl~sI~~Ri~Ll~~~~ 88 (228)
T PF07373_consen 20 ELQDVNARIAQLQSIQKS--VKGS-DYEKEINKLLKTAFELKQSLEKIAEGGITIYDLDSIPARIELLIDVG 88 (228)
T ss_pred HHHHHHHHHHHHHHHHHh--cccc-hHHHHHHHHHHHHHHHHHHHHHHhcCCCcccchhhHHHHHHHHHHHH
Confidence 444555555555443221 1222 578899999999999999999988766666 788999998776543
No 87
>KOG1419|consensus
Probab=39.42 E-value=3.3e+02 Score=25.54 Aligned_cols=67 Identities=13% Similarity=0.184 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHH------HHHHHHHHHHH---HHHHHHHHhc----CCCCC----------ChHHHHHHHHHHHHHHHH
Q psy9793 16 YEILNKKFRAVQK------TIDREVSYVQS---AANELEKTIA----SSEKP----------PLTEVTRLLGGMFERLQA 72 (133)
Q Consensus 16 yElLrKnFR~~QK------~IEkE~~~v~~---~~~eL~k~l~----~~~~~----------~~~~a~~~Ld~lI~rl~~ 72 (133)
|=..+|.|+.++| .||..+..-.+ -+++|...+. .+.++ .+-.....|..+-++|+.
T Consensus 501 ~~vakrkFketlrPYDVkDVIEQYSaGHldm~~RiK~LQ~rlDqi~Gk~~~~~~~~~~~~~~~~~Sm~~Rl~~vEkqv~~ 580 (654)
T KOG1419|consen 501 FLVAKRKFKETLRPYDVKDVIEQYSAGHLDMLSRIKELQARLDQIVGKPPVSTDRPADSEIPEKLSMMGRLVKVEKQVQS 580 (654)
T ss_pred hhhhhHHHHHhcCcccHHHHHHHHhhhhHHHHHHHHHHHHHHHHHcCCCCCCCCCccccccCCcchHHHHHHHHHHHHHH
Confidence 3347888988887 45554443322 2444444321 11111 111566777777788888
Q ss_pred HHHHHhhHHH
Q psy9793 73 LKRKAGESIG 82 (133)
Q Consensus 73 LKRKL~~~~~ 82 (133)
|.+|++-+.+
T Consensus 581 le~Kld~l~~ 590 (654)
T KOG1419|consen 581 LEKKLDLLVE 590 (654)
T ss_pred HHHHHHHHHH
Confidence 8888776655
No 88
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=39.13 E-value=88 Score=20.93 Aligned_cols=40 Identities=15% Similarity=0.161 Sum_probs=28.6
Q ss_pred ccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9793 8 EHPTLKVPYEILNKKFRAVQKTIDREVSYVQSAANELEKT 47 (133)
Q Consensus 8 E~p~lkVPyElLrKnFR~~QK~IEkE~~~v~~~~~eL~k~ 47 (133)
...|++.|.+.+......-.+.++.++..+.+....+.+.
T Consensus 52 G~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~ 91 (106)
T PF01920_consen 52 GKMFVKQDKEEAIEELEERIEKLEKEIKKLEKQLKYLEKK 91 (106)
T ss_dssp TTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788888888887777777777777777666665544
No 89
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=38.64 E-value=1.6e+02 Score=21.87 Aligned_cols=13 Identities=15% Similarity=0.276 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHhh
Q psy9793 88 GHVCKRRIEHLKE 100 (133)
Q Consensus 88 ~~r~k~Rl~hL~e 100 (133)
+..+..||++|+.
T Consensus 125 ~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 125 IEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHh
Confidence 5566667777665
No 90
>KOG2662|consensus
Probab=38.27 E-value=2.9e+02 Score=24.59 Aligned_cols=75 Identities=20% Similarity=0.421 Sum_probs=35.7
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcCCCCCChH-----HHHHHHHHHHHHHHHHHHHHhhH
Q psy9793 13 KVPYEILNKKFRAVQKTIDREVSYVQSAANELEKT-------IASSEKPPLT-----EVTRLLGGMFERLQALKRKAGES 80 (133)
Q Consensus 13 kVPyElLrKnFR~~QK~IEkE~~~v~~~~~eL~k~-------l~~~~~~~~~-----~a~~~Ld~lI~rl~~LKRKL~~~ 80 (133)
..||| ||...-.+|-=.+.+...+.+|... +.. +.+.+. ..-+.|..+.+|++.++.-|++.
T Consensus 173 ~lPFE-----FrALE~aLe~~~s~L~~~~~~Le~~~~~~LdeLt~-~is~~nL~~lr~~k~~Lt~l~~rvqkvRDeLe~L 246 (414)
T KOG2662|consen 173 ELPFE-----FRALEVALEAACSFLDSRLSELETEAYPLLDELTN-KISTLNLERLRILKKRLTELTSRVQKVRDELEEL 246 (414)
T ss_pred CCchH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 46777 5655555555555555555554432 111 122110 12233444455555555555555
Q ss_pred HHHHHHHHHHHHH
Q psy9793 81 IGEELQVGHVCKR 93 (133)
Q Consensus 81 ~~eE~~~~~r~k~ 93 (133)
-+.+....+.|-.
T Consensus 247 Lddd~Dma~mYLT 259 (414)
T KOG2662|consen 247 LDDDDDMAEMYLT 259 (414)
T ss_pred hcChHHHHHHHHh
Confidence 5555555555433
No 91
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=38.21 E-value=1.9e+02 Score=22.44 Aligned_cols=16 Identities=13% Similarity=0.036 Sum_probs=6.7
Q ss_pred HHhhHHHHHHHHHHHH
Q psy9793 76 KAGESIGEELQVGHVC 91 (133)
Q Consensus 76 KL~~~~~eE~~~~~r~ 91 (133)
...+.+.+|...+.+-
T Consensus 163 ~~~k~~~~ei~~lk~~ 178 (189)
T PF10211_consen 163 EEEKKHQEEIDFLKKQ 178 (189)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333344444444443
No 92
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=38.11 E-value=1.6e+02 Score=21.57 Aligned_cols=106 Identities=20% Similarity=0.276 Sum_probs=51.8
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHH--HHHHHHH
Q psy9793 11 TLKVPYEILNKKFRAVQKTIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAGESI--GEELQVG 88 (133)
Q Consensus 11 ~lkVPyElLrKnFR~~QK~IEkE~~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKRKL~~~~--~eE~~~~ 88 (133)
.+.-..+.|.+.++..+..+.+-...+.+.-..+.+.... .... .....+..||.=++.|.+-+.... .....+.
T Consensus 15 ~~~~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~~e~~~--~~~~-~~~~~~~~ll~v~D~l~~a~~~~~~~~~~~~~~ 91 (165)
T PF01025_consen 15 ELEEELEELEKEIEELKERLLRLQAEFENYRKRLEKEKEE--AKKY-ALEKFLKDLLPVLDNLERALEAAKSNEEEESLL 91 (165)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHC-CHHHHHHHHHHHHHHHHHHHCC-SHHCTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH-HHHHHHHHHHHHHHHHHHHHHhhhccchHHHHH
Confidence 3444556666666666666655554444444444332211 0001 244567778888888888887742 2223443
Q ss_pred HHHHHHHHHHhhhhcCCCCCCCCCCCCCCCCCCCC
Q psy9793 89 HVCKRRIEHLKEHSGNVLSNTSPDEIPPHNTPFPP 123 (133)
Q Consensus 89 ~r~k~Rl~hL~el~~~~~~~~~~~~~~~~~~~~~~ 123 (133)
..+..=.+.|..+- ....+.+|.|.+.||-|
T Consensus 92 ~g~~~~~~~l~~~L----~~~Gv~~i~~~G~~FDp 122 (165)
T PF01025_consen 92 EGLEMILKQLEDIL----EKNGVEEIEPVGEPFDP 122 (165)
T ss_dssp HHHHHHHHHHHHHH----HTTTEEEE--TSSB--T
T ss_pred HHHHHHHHHHHHHH----HHCCCEecCCCCCCCCH
Confidence 44433333333321 12335566666777765
No 93
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=37.73 E-value=3e+02 Score=25.17 Aligned_cols=79 Identities=11% Similarity=0.111 Sum_probs=40.2
Q ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q psy9793 22 KFRAVQKTI--DREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAGESIGEELQVGHVCKRRIEHLK 99 (133)
Q Consensus 22 nFR~~QK~I--EkE~~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKRKL~~~~~eE~~~~~r~k~Rl~hL~ 99 (133)
.+.+..+.+ .-++......++++.+.-=.+..+-. .+.+.++.+.+.++..+.++....++=....+.++..+.-|+
T Consensus 179 ~w~~~~~~Lp~~~~~~~yk~~v~~i~~~~ik~p~~i~-~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~lk 257 (555)
T TIGR03545 179 KWKKRKKDLPNKQDLEEYKKRLEAIKKKDIKNPLELQ-KIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAELK 257 (555)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHhccCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 444444444 33555666666666552000011111 445566655555555555555555554555666666666666
Q ss_pred hh
Q psy9793 100 EH 101 (133)
Q Consensus 100 el 101 (133)
..
T Consensus 258 ~a 259 (555)
T TIGR03545 258 KA 259 (555)
T ss_pred hc
Confidence 54
No 94
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=37.33 E-value=2.6e+02 Score=23.71 Aligned_cols=58 Identities=14% Similarity=0.149 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy9793 23 FRAVQKTIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAGESIGE 83 (133)
Q Consensus 23 FR~~QK~IEkE~~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKRKL~~~~~e 83 (133)
|-+-++.-..+.....+.+.++...+.. .+.. ++...++.+-+.+...++.+++...+
T Consensus 39 ~yQ~~EQAr~~A~~fA~~ld~~~~kl~~--Ms~~-ql~~~~~k~~~si~~q~~~i~~l~~~ 96 (301)
T PF06120_consen 39 FYQNAEQARQEAIEFADSLDELKEKLKE--MSST-QLRANIAKAEESIAAQKRAIEDLQKK 96 (301)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHh--cCHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666777778888888888777652 4444 66667777777777777666666554
No 95
>cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth fact
Probab=37.30 E-value=2.2e+02 Score=23.03 Aligned_cols=26 Identities=12% Similarity=0.169 Sum_probs=17.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHh
Q psy9793 74 KRKAGESIGEELQVGHVCKRRIEHLK 99 (133)
Q Consensus 74 KRKL~~~~~eE~~~~~r~k~Rl~hL~ 99 (133)
-+-|.+.++.+..+..+|..-+..|+
T Consensus 201 ~~~L~~lv~AQl~Yh~~~~e~L~~L~ 226 (229)
T cd07616 201 LRCLNDFVEAQMTYYAQCYQYMLDLQ 226 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566667777777777766666554
No 96
>COG4066 Uncharacterized protein conserved in archaea [Function unknown]
Probab=37.15 E-value=1.3e+02 Score=23.38 Aligned_cols=49 Identities=12% Similarity=0.186 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q psy9793 27 QKTIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRK 76 (133)
Q Consensus 27 QK~IEkE~~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKRK 76 (133)
.+.||.=+..+.+.++++.+.--.+....+ .-.+.+|.+.++++.+|+-
T Consensus 42 ~~yvea~m~al~~rindir~~~~~~~~d~e-g~~E~~D~~l~~~~~~k~~ 90 (165)
T COG4066 42 NHYVEAMMKALIERINDIRKKSVDEIQDEE-GDEEKLDEMLNRIERFKKY 90 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCcccCcc-cCHHHHHHHHHHHHHHHhc
Confidence 356777788888888888765211112223 4457788888888877764
No 97
>KOG2604|consensus
Probab=36.76 E-value=2.1e+02 Score=27.22 Aligned_cols=49 Identities=8% Similarity=0.095 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHH-------HHH---HHHHHHHHHHHHHhhhhcCCC
Q psy9793 58 EVTRLLGGMFERLQALKRKAGESIG-------EEL---QVGHVCKRRIEHLKEHSGNVL 106 (133)
Q Consensus 58 ~a~~~Ld~lI~rl~~LKRKL~~~~~-------eE~---~~~~r~k~Rl~hL~el~~~~~ 106 (133)
.+...|++|.++.+..-.|....++ ++. ++...|+++|.+|.+++....
T Consensus 116 ~~~~~l~sl~~k~~~vs~kt~~l~eace~l~~eq~kl~elae~I~k~L~yF~~le~l~~ 174 (733)
T KOG2604|consen 116 NALDTLLSLQKKFEFVSQKTSALHEACEQLLEEQSKLSELAEGIRKKLHYFAELEELNR 174 (733)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 4666677777777666666655543 332 346789999999999987533
No 98
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=36.47 E-value=2.8e+02 Score=23.97 Aligned_cols=78 Identities=21% Similarity=0.250 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC------CCCChHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHH
Q psy9793 27 QKTIDREVSYVQSAANELEKTIASS------EKPPLTEVTRLLGGMFERLQALKRKAGE---SIGEELQVGHVCKRRIEH 97 (133)
Q Consensus 27 QK~IEkE~~~v~~~~~eL~k~l~~~------~~~~~~~a~~~Ld~lI~rl~~LKRKL~~---~~~eE~~~~~r~k~Rl~h 97 (133)
.|.+|||++.+.-+.+-++....+. .+=+-+.-++.=.-|-.-||.|+.||.- ....|.++=+..+-||.-
T Consensus 75 krtLeRELARaKV~aNRVA~vvANEWKD~nDkvMPVKqWLEERR~lQgEmQ~LrDKLAiaERtAkaEaQLkeK~klRLK~ 154 (351)
T PF07058_consen 75 KRTLERELARAKVSANRVATVVANEWKDENDKVMPVKQWLEERRFLQGEMQQLRDKLAIAERTAKAEAQLKEKLKLRLKV 154 (351)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhcccccccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999998888877665433 1111224455555677778889999854 457788888999999999
Q ss_pred HhhhhcC
Q psy9793 98 LKEHSGN 104 (133)
Q Consensus 98 L~el~~~ 104 (133)
|.+--..
T Consensus 155 LEe~Lk~ 161 (351)
T PF07058_consen 155 LEEGLKG 161 (351)
T ss_pred HHhhccC
Confidence 9875433
No 99
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=36.44 E-value=2.5e+02 Score=23.36 Aligned_cols=43 Identities=12% Similarity=0.202 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHH----------HHHHHHHHHHHHhhh
Q psy9793 59 VTRLLGGMFERLQALKRKAGESIGEELQ----------VGHVCKRRIEHLKEH 101 (133)
Q Consensus 59 a~~~Ld~lI~rl~~LKRKL~~~~~eE~~----------~~~r~k~Rl~hL~el 101 (133)
+...+..+..+++.+++.+.....+|.. -++|.++|++=|+..
T Consensus 167 l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~v 219 (267)
T PF10234_consen 167 LKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSV 219 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344455555555555555555555433 367777777776654
No 100
>PRK14066 exodeoxyribonuclease VII small subunit; Provisional
Probab=36.26 E-value=82 Score=21.19 Aligned_cols=15 Identities=7% Similarity=0.534 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHh
Q psy9793 85 LQVGHVCKRRIEHLK 99 (133)
Q Consensus 85 ~~~~~r~k~Rl~hL~ 99 (133)
..+++.|.++|+.-+
T Consensus 38 ~~L~k~C~~~L~~ae 52 (75)
T PRK14066 38 VKHAAFCSKKLDEAE 52 (75)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555555544
No 101
>KOG4367|consensus
Probab=36.18 E-value=2.3e+02 Score=25.98 Aligned_cols=40 Identities=15% Similarity=0.182 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHHH
Q psy9793 58 EVTRLLGGMFERLQALKRKAGESIGEELQV-GHVCKRRIEH 97 (133)
Q Consensus 58 ~a~~~Ld~lI~rl~~LKRKL~~~~~eE~~~-~~r~k~Rl~h 97 (133)
-.+..+|++|..|+.-|.+|-..+++|.+. +...+.-|.|
T Consensus 312 ~l~~q~d~lid~l~~rk~qll~~v~~e~e~k~kv~r~qi~~ 352 (699)
T KOG4367|consen 312 CLVAQCDALIDALNRRKAQLLARVNKEHEHKLKVVRDQISH 352 (699)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhh
Confidence 578899999999999999999999988665 5555555554
No 102
>PRK09039 hypothetical protein; Validated
Probab=35.50 E-value=2.8e+02 Score=23.53 Aligned_cols=59 Identities=12% Similarity=0.154 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhh
Q psy9793 33 EVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAGESIGEELQVGHVCKRRIEHLKEH 101 (133)
Q Consensus 33 E~~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKRKL~~~~~eE~~~~~r~k~Rl~hL~el 101 (133)
++.++...+..|...+. .+-......-.++..|+++|+.....+..-+.+. |-+++..+
T Consensus 145 qI~aLr~Qla~le~~L~--------~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~--~~~~~~~l 203 (343)
T PRK09039 145 QIAALRRQLAALEAALD--------ASEKRDRESQAKIADLGRRLNVALAQRVQELNRY--RSEFFGRL 203 (343)
T ss_pred HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--HHHHHHHH
Confidence 55555555555554443 3334446666677777778887776666666665 55555444
No 103
>KOG4057|consensus
Probab=35.48 E-value=2.1e+02 Score=22.27 Aligned_cols=67 Identities=10% Similarity=0.112 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC----------C------CCC----ChHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy9793 24 RAVQKTIDREVSYVQSAANELEKTIAS----------S------EKP----PLTEVTRLLGGMFERLQALKRKAGESIGE 83 (133)
Q Consensus 24 R~~QK~IEkE~~~v~~~~~eL~k~l~~----------~------~~~----~~~~a~~~Ld~lI~rl~~LKRKL~~~~~e 83 (133)
|+.+|++|+...++.+++..++..++. | ..+ .. -|...|+..=.+|..+.|.+....++
T Consensus 39 K~~~kn~e~qa~~F~ksit~VE~eLSaQi~YLtqV~tGqpHeGS~y~s~k~~q-mA~~r~~~ars~l~~i~rt~~~~s~~ 117 (180)
T KOG4057|consen 39 KQIGKNMEDQANNFKKSITQVENELSAQIQYLTQVCTGQPHEGSTYGSLKNSQ-MAQSRLSSARSELFQIVRTLDPTSDE 117 (180)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHH-HHHHHHHHHHHHHHHHHHHhccccch
Confidence 577888888888888887777665431 0 011 12 45666777777777777776666655
Q ss_pred HHHHHHHH
Q psy9793 84 ELQVGHVC 91 (133)
Q Consensus 84 E~~~~~r~ 91 (133)
-...+..=
T Consensus 118 ~~q~le~e 125 (180)
T KOG4057|consen 118 PQQTLEDE 125 (180)
T ss_pred HHHHHHhh
Confidence 44444433
No 104
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=34.80 E-value=2.1e+02 Score=24.63 Aligned_cols=46 Identities=20% Similarity=0.181 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhH----HHHHHHHHHH----HHHHHHHHhhhhc
Q psy9793 58 EVTRLLGGMFERLQALKRKAGES----IGEELQVGHV----CKRRIEHLKEHSG 103 (133)
Q Consensus 58 ~a~~~Ld~lI~rl~~LKRKL~~~----~~eE~~~~~r----~k~Rl~hL~el~~ 103 (133)
...+.|+.-.+++..|+..|... ..++.+.++. ++.|-.-|.+.+.
T Consensus 36 ~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r~~~l~DmEa 89 (330)
T PF07851_consen 36 KCSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKERRCQLFDMEA 89 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHhhHHHHHh
Confidence 34555555666666666666555 2334444433 4455555666653
No 105
>PF05549 Allexi_40kDa: Allexivirus 40kDa protein; InterPro: IPR008398 This family of sequences contains the 40 kDa polypeptides from garlic viruses (Allexiviruses), which do not resemble any other plant virus gene products reported so far []. Rod-shaped flexuous viruses have been isolated from garlic plants, Allium sativum. Infection by this virus creates typical mosaic symptoms. The core-like sequence of a zinc finger protein preceded by a cluster of basic amino acid residues shows similarities to the corresponding 12K proteins of the potexviruses and carlaviruses []. Viral epidemics by allexiviruses are also known to be caused by aphids and eriophyid mites (Aceria tulipae) carrying Potyviruses, Carlaviruses, and Allexiviruses [].
Probab=34.08 E-value=1.6e+02 Score=24.70 Aligned_cols=24 Identities=17% Similarity=0.360 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHH
Q psy9793 58 EVTRLLGGMFERLQALKRKAGESI 81 (133)
Q Consensus 58 ~a~~~Ld~lI~rl~~LKRKL~~~~ 81 (133)
+++..|+.+++++.....+.+...
T Consensus 85 ~~~~tL~~~~~~i~~~~~~~~~~~ 108 (271)
T PF05549_consen 85 DALRTLTRLLDSIHSVEQKSELSA 108 (271)
T ss_pred HHHHHHHhhHHHHHHHHHHHhccc
Confidence 567777777777777776665554
No 106
>PF10154 DUF2362: Uncharacterized conserved protein (DUF2362); InterPro: IPR019311 This is a family of proteins conserved from nematodes to humans. The function is not known.
Probab=33.63 E-value=3.1e+02 Score=24.98 Aligned_cols=44 Identities=20% Similarity=0.228 Sum_probs=34.1
Q ss_pred cccccccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9793 3 DKKCLEHPTLKVPYEILNKKFRAVQKTIDREVSYVQSAANELEK 46 (133)
Q Consensus 3 ~il~LE~p~lkVPyElLrKnFR~~QK~IEkE~~~v~~~~~eL~k 46 (133)
.+|.||+.-.+.=-|+++..=...+|.-+|....+...+..|..
T Consensus 108 tLL~LE~~Ya~~vseli~~Rd~el~kl~~rq~~Eme~a~q~Lg~ 151 (510)
T PF10154_consen 108 TLLQLEHNYAKAVSELIQARDQELKKLQERQTEEMEKAMQKLGI 151 (510)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 46677777777777888888888888888888888888777654
No 107
>PRK14069 exodeoxyribonuclease VII small subunit; Provisional
Probab=33.59 E-value=88 Score=22.17 Aligned_cols=42 Identities=17% Similarity=0.330 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHh
Q psy9793 58 EVTRLLGGMFERLQALKRKAGESI---GEELQVGHVCKRRIEHLK 99 (133)
Q Consensus 58 ~a~~~Ld~lI~rl~~LKRKL~~~~---~eE~~~~~r~k~Rl~hL~ 99 (133)
++++.|+.++++|+.=.=-|++++ .+-..++..|+.+|+..+
T Consensus 12 eal~~LEeIV~~LEsgdl~LEesl~lyeeGv~L~k~C~~~L~~AE 56 (95)
T PRK14069 12 DALRELEQIAEKLERQDFSLEESLKAYERGMELKKICSGILDDAE 56 (95)
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555443333333222 233445556666655544
No 108
>KOG4253|consensus
Probab=33.35 E-value=2.4e+02 Score=22.13 Aligned_cols=54 Identities=9% Similarity=0.129 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q psy9793 22 KFRAVQKTIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAGE 79 (133)
Q Consensus 22 nFR~~QK~IEkE~~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKRKL~~ 79 (133)
.+|..+|..++|..-+.. +.++++.++. .+.. +--++-..+-.|++.|-++++.
T Consensus 35 ~s~~~nkdakk~~q~~~e-i~dmKqelna--vs~q-D~fAkwaRlnRKi~kl~~ele~ 88 (175)
T KOG4253|consen 35 MSRVGNKDAKKESQKVAE-IQDMKQELNA--VSMQ-DNFAKWARLNRKINKLDKELET 88 (175)
T ss_pred hhcccchhHHHHHHHHHH-HHHHHHHHhh--hhhH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888765544 6677666543 3333 3444444444444445455533
No 109
>PHA02682 ORF080 virion core protein; Provisional
Probab=33.26 E-value=99 Score=25.31 Aligned_cols=22 Identities=14% Similarity=0.312 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy9793 25 AVQKTIDREVSYVQSAANELEK 46 (133)
Q Consensus 25 ~~QK~IEkE~~~v~~~~~eL~k 46 (133)
....+|.||+..|.+++.+|+.
T Consensus 208 ~~k~~ikkeladiadsvrdl~a 229 (280)
T PHA02682 208 DDKDLIKKELADIADSVRDLNA 229 (280)
T ss_pred chHHHHHHHHHHHHHHHHhhhh
Confidence 4466788888888888888765
No 110
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=33.05 E-value=3.8e+02 Score=24.41 Aligned_cols=59 Identities=14% Similarity=0.111 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy9793 29 TIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAGESIGEELQVG 88 (133)
Q Consensus 29 ~IEkE~~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKRKL~~~~~eE~~~~ 88 (133)
.+|+++..+...+.+++..+.....-.+ ...+.+..+.+.+..++..+++...+=.++.
T Consensus 567 ~~e~~i~~le~~~~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~ 625 (638)
T PRK10636 567 RLEKEMEKLNAQLAQAEEKLGDSELYDQ-SRKAELTACLQQQASAKSGLEECEMAWLEAQ 625 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777777788877777777653211111 1123567777777777777776665544433
No 111
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=33.04 E-value=3e+02 Score=23.17 Aligned_cols=36 Identities=14% Similarity=0.223 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhh
Q psy9793 62 LLGGMFERLQALKRKAGESIGEELQVGHVCKRRIEHLKEH 101 (133)
Q Consensus 62 ~Ld~lI~rl~~LKRKL~~~~~eE~~~~~r~k~Rl~hL~el 101 (133)
-++.+-.|+..-+.+|+.+... +..|+++|+.|+.-
T Consensus 37 iF~rI~~Rv~~~~~~l~~i~~R----i~~~qaKi~~l~gs 72 (297)
T PF11945_consen 37 IFSRISARVERNRERLQAIQQR----IEVAQAKIEKLQGS 72 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhCC
Confidence 3445555666666666655443 66777777777654
No 112
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=32.71 E-value=2e+02 Score=24.16 Aligned_cols=42 Identities=10% Similarity=0.075 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Q psy9793 59 VTRLLGGMFERLQALKRKAGESIGEELQVGHVCKRRIEHLKE 100 (133)
Q Consensus 59 a~~~Ld~lI~rl~~LKRKL~~~~~eE~~~~~r~k~Rl~hL~e 100 (133)
++..|+.|.+-.+..-.++...+.++..-++.+..||+..+.
T Consensus 23 i~~aL~~L~~v~~diF~rI~~Rv~~~~~~l~~i~~Ri~~~qa 64 (297)
T PF11945_consen 23 IADALEYLDKVSNDIFSRISARVERNRERLQAIQQRIEVAQA 64 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444555667788888888888888888887764
No 113
>PRK14067 exodeoxyribonuclease VII small subunit; Provisional
Probab=32.65 E-value=1.1e+02 Score=20.79 Aligned_cols=42 Identities=17% Similarity=0.304 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHh
Q psy9793 58 EVTRLLGGMFERLQALKRKAGESI---GEELQVGHVCKRRIEHLK 99 (133)
Q Consensus 58 ~a~~~Ld~lI~rl~~LKRKL~~~~---~eE~~~~~r~k~Rl~hL~ 99 (133)
++++.|+.++++|+.=.=.|++++ .+-..+++.|+.+|+.-+
T Consensus 11 eal~~LEeIV~~LE~~~l~Lees~~lyeeG~~L~k~C~~~L~~ae 55 (80)
T PRK14067 11 QQLARLQEIVDALEGGDLPLEESVALYKEGLGLARACREQLAKAR 55 (80)
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444443222222222 222344555555555443
No 114
>PF05527 DUF758: Domain of unknown function (DUF758) ; InterPro: IPR008477 This is a family of eukaryotic proteins with unknown function, which are induced by tumour necrosis factor.; PDB: 3F4M_A.
Probab=32.64 E-value=2.1e+02 Score=22.67 Aligned_cols=73 Identities=15% Similarity=0.201 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q psy9793 25 AVQKTIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAGESIGEELQVGHVCKRRIEHLK 99 (133)
Q Consensus 25 ~~QK~IEkE~~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKRKL~~~~~eE~~~~~r~k~Rl~hL~ 99 (133)
.++..|+-.++.+.+.+-.+.+...++....+ .+++.|=.++-|+-.|- +=++...||...++..+.++.++.
T Consensus 26 ~ak~fIddtsselLD~ly~l~K~~t~~kkeA~-ki~KniIKi~vKigvl~-rn~qf~~eEl~~~~~fr~k~~~~a 98 (186)
T PF05527_consen 26 VAKMFIDDTSSELLDELYRLLKEYTGNKKEAE-KIIKNIIKIVVKIGVLY-RNNQFSDEELALAEKFRKKFHQLA 98 (186)
T ss_dssp -------HHHHHHHHHHHHHHHHHHS-HHHHH-HHHHHHHHHHHHHHHHH-HTT---HHHHHHHHHHHHHHHHHH
T ss_pred hhHHhcCchHHHHHHHHHHHHHHHhcCHHHHH-HHHHHHHHHHHHhheee-ecCCCCHHHHHHHHHHHHHHHHHH
Confidence 35667888888888888888776543322223 44555555555554443 346777889999999999998876
No 115
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=32.34 E-value=77 Score=22.79 Aligned_cols=31 Identities=16% Similarity=0.350 Sum_probs=23.6
Q ss_pred cccH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9793 13 KVPY-EILNKKFRAVQKTIDREVSYVQSAANE 43 (133)
Q Consensus 13 kVPy-ElLrKnFR~~QK~IEkE~~~v~~~~~e 43 (133)
+++- |.+++..+++.|.+|+....+++.+.+
T Consensus 69 ~~~~~ee~k~~~~q~rK~~Ek~Aa~LT~~i~~ 100 (101)
T PF09943_consen 69 RLAESEEVKKVLRQVRKDLEKNAAKLTRKIEK 100 (101)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444 888888888888888888887776543
No 116
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=32.03 E-value=1.6e+02 Score=19.85 Aligned_cols=20 Identities=20% Similarity=0.343 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy9793 28 KTIDREVSYVQSAANELEKT 47 (133)
Q Consensus 28 K~IEkE~~~v~~~~~eL~k~ 47 (133)
..|..++..|...+.+|.+.
T Consensus 11 ~~I~~~I~~i~~~v~~l~~l 30 (117)
T smart00503 11 EEIRANIQKISQNVAELQKL 30 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555443
No 117
>PRK00977 exodeoxyribonuclease VII small subunit; Provisional
Probab=31.74 E-value=1e+02 Score=20.83 Aligned_cols=42 Identities=17% Similarity=0.314 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHh
Q psy9793 58 EVTRLLGGMFERLQALKRKAGES---IGEELQVGHVCKRRIEHLK 99 (133)
Q Consensus 58 ~a~~~Ld~lI~rl~~LKRKL~~~---~~eE~~~~~r~k~Rl~hL~ 99 (133)
++++.|..++++|+.=.=.|+++ +.+-..+++.|+.+|+..+
T Consensus 14 ea~~~LEeIv~~LE~~~l~Lees~~lyeeg~~L~k~C~~~L~~ae 58 (80)
T PRK00977 14 EALAELEEIVTRLESGDLPLEESLAAFERGVALARQCQKKLQQAE 58 (80)
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555322222222 2334455666666666554
No 118
>PHA03161 hypothetical protein; Provisional
Probab=31.32 E-value=2.4e+02 Score=21.64 Aligned_cols=9 Identities=22% Similarity=0.671 Sum_probs=6.4
Q ss_pred CCCCCCccc
Q psy9793 120 PFPPCPATR 128 (133)
Q Consensus 120 ~~~~~~~~~ 128 (133)
-.|+||++.
T Consensus 141 ~lPrcP~~~ 149 (150)
T PHA03161 141 ALPRVPSAT 149 (150)
T ss_pred hCCCCCCCc
Confidence 358899873
No 119
>PRK14063 exodeoxyribonuclease VII small subunit; Provisional
Probab=30.92 E-value=1.1e+02 Score=20.45 Aligned_cols=15 Identities=7% Similarity=0.727 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHh
Q psy9793 85 LQVGHVCKRRIEHLK 99 (133)
Q Consensus 85 ~~~~~r~k~Rl~hL~ 99 (133)
..+++.|+.+|+.-+
T Consensus 39 ~~L~k~C~~~L~~aE 53 (76)
T PRK14063 39 MELSKLCDEKLKNVQ 53 (76)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555555544
No 120
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=30.50 E-value=2.3e+02 Score=21.04 Aligned_cols=48 Identities=15% Similarity=0.233 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhH
Q psy9793 28 KTIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAGES 80 (133)
Q Consensus 28 K~IEkE~~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKRKL~~~ 80 (133)
..+|.++..+...+.++...+..+ + ......+++-.|++.|...|+..
T Consensus 45 ~~lE~eld~~~~~l~~~k~~lee~----~-~~~~~~E~l~rriq~LEeele~a 92 (143)
T PF12718_consen 45 QQLEEELDKLEEQLKEAKEKLEES----E-KRKSNAEQLNRRIQLLEEELEEA 92 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhH----H-HHHHhHHHHHhhHHHHHHHHHHH
Confidence 345555555555555555544321 1 22233344555555555544443
No 121
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=30.48 E-value=2.9e+02 Score=22.31 Aligned_cols=83 Identities=16% Similarity=0.185 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CCC-ChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy9793 16 YEILNKKFRAVQKTIDREVSYVQSAANELEKTIASS-----EKP-PLTEVTRLLGGMFERLQALKRKAGESIGEELQVGH 89 (133)
Q Consensus 16 yElLrKnFR~~QK~IEkE~~~v~~~~~eL~k~l~~~-----~~~-~~~~a~~~Ld~lI~rl~~LKRKL~~~~~eE~~~~~ 89 (133)
||-++-.++.....++.|-..|...-++.+.++..- .+- -. .-+..|+.+|++.+.=+.+..+.+..-...+.
T Consensus 13 lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~-~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~ 91 (230)
T PF10146_consen 13 LEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQIN-QDINTLENIIKQAESERNKRQEKIQRLYEEYK 91 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566667777777777777777776666655543210 000 01 23456788888888777777777766666777
Q ss_pred HHHHHHHHHh
Q psy9793 90 VCKRRIEHLK 99 (133)
Q Consensus 90 r~k~Rl~hL~ 99 (133)
.++..|+-+.
T Consensus 92 ~Lk~~in~~R 101 (230)
T PF10146_consen 92 PLKDEINELR 101 (230)
T ss_pred HHHHHHHHHH
Confidence 7777776654
No 122
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=30.39 E-value=2e+02 Score=20.43 Aligned_cols=17 Identities=24% Similarity=0.429 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy9793 30 IDREVSYVQSAANELEK 46 (133)
Q Consensus 30 IEkE~~~v~~~~~eL~k 46 (133)
|..++..+...+..|.+
T Consensus 11 I~~~i~~i~~~v~~l~~ 27 (151)
T cd00179 11 IRGNIDKISEDVEELQK 27 (151)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444433
No 123
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=30.35 E-value=1.6e+02 Score=19.16 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q psy9793 58 EVTRLLGGMFERLQALKRKAGE 79 (133)
Q Consensus 58 ~a~~~Ld~lI~rl~~LKRKL~~ 79 (133)
++-.....+...|..|++.+++
T Consensus 36 eaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 36 EAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555544
No 124
>COG3334 Uncharacterized conserved protein [Function unknown]
Probab=30.34 E-value=2.8e+02 Score=22.07 Aligned_cols=80 Identities=13% Similarity=0.027 Sum_probs=54.8
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhh
Q psy9793 23 FRA-VQKTIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAGESIGEELQVGHVCKRRIEHLKEH 101 (133)
Q Consensus 23 FR~-~QK~IEkE~~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKRKL~~~~~eE~~~~~r~k~Rl~hL~el 101 (133)
+.+ .|.-++|+...+.+++.+....+........ .=+..++.-++.++..|.+++....+...++..-+++.+.|-+.
T Consensus 49 ~~~~~~~e~~k~~~~i~da~~dq~~~~q~e~~~~l-k~~a~~~E~lk~lE~~kae~k~~~e~re~~l~~~qae~~klv~i 127 (192)
T COG3334 49 KKAAAQSEIEKFCANIADAAADQLYALQKELLEKL-KDLAEVNERLKALEKKKAELKDLEEEREGILRSKQAEDGKLVKI 127 (192)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 344 6777788888888887766544432111001 12256677788888888899999999888888888888877776
Q ss_pred hc
Q psy9793 102 SG 103 (133)
Q Consensus 102 ~~ 103 (133)
.+
T Consensus 128 Y~ 129 (192)
T COG3334 128 YS 129 (192)
T ss_pred HH
Confidence 54
No 125
>PRK09343 prefoldin subunit beta; Provisional
Probab=29.98 E-value=2.1e+02 Score=20.52 Aligned_cols=6 Identities=17% Similarity=0.440 Sum_probs=2.1
Q ss_pred HHHHHH
Q psy9793 70 LQALKR 75 (133)
Q Consensus 70 l~~LKR 75 (133)
+..|++
T Consensus 87 ik~lek 92 (121)
T PRK09343 87 SRTLEK 92 (121)
T ss_pred HHHHHH
Confidence 333333
No 126
>PRK11637 AmiB activator; Provisional
Probab=29.83 E-value=3.6e+02 Score=23.13 Aligned_cols=9 Identities=0% Similarity=-0.090 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q psy9793 89 HVCKRRIEH 97 (133)
Q Consensus 89 ~r~k~Rl~h 97 (133)
...+++|+.
T Consensus 113 ~~~q~~l~~ 121 (428)
T PRK11637 113 AKLEQQQAA 121 (428)
T ss_pred HHHHHHHHH
Confidence 333333333
No 127
>PLN02943 aminoacyl-tRNA ligase
Probab=29.56 E-value=1.4e+02 Score=28.80 Aligned_cols=40 Identities=15% Similarity=0.210 Sum_probs=26.9
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy9793 11 TLKVPYEILNKKFRAVQKTIDREVSYVQSAANELEKTIASS 51 (133)
Q Consensus 11 ~lkVPyElLrKnFR~~QK~IEkE~~~v~~~~~eL~k~l~~~ 51 (133)
.+.+|.+-+--. ..-..-++|++..+++.++.+.+.+++.
T Consensus 876 ~~~l~l~~~iD~-~~E~~rL~K~l~klekei~~~~~kLsN~ 915 (958)
T PLN02943 876 EAYLPLADMVDI-SAEVERLSKRLSKMQTEYDALAARLSSP 915 (958)
T ss_pred EEEEeccccccH-HHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 346666554332 2333348889999999999998888764
No 128
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=29.54 E-value=2.4e+02 Score=21.09 Aligned_cols=23 Identities=17% Similarity=0.195 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy9793 24 RAVQKTIDREVSYVQSAANELEK 46 (133)
Q Consensus 24 R~~QK~IEkE~~~v~~~~~eL~k 46 (133)
+-+.+.|+.--..|.+.+.+..+
T Consensus 42 kpI~~~l~~R~~~I~~~l~~A~~ 64 (174)
T PRK07352 42 GFLGKILEERREAILQALKEAEE 64 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555544
No 129
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=29.37 E-value=2.3e+02 Score=20.80 Aligned_cols=15 Identities=27% Similarity=0.089 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHhhh
Q psy9793 87 VGHVCKRRIEHLKEH 101 (133)
Q Consensus 87 ~~~r~k~Rl~hL~el 101 (133)
.+..++.|+++|..+
T Consensus 40 ~~~~l~~~i~~l~~~ 54 (149)
T PF07352_consen 40 EIAPLQNRIEYLEGL 54 (149)
T ss_dssp HCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345566666666543
No 130
>PF07160 DUF1395: Protein of unknown function (DUF1395); InterPro: IPR009829 This family consists of several hypothetical eukaryotic proteins of around 250 residues in length. The function of this family is unknown.; PDB: 4AJ5_G.
Probab=29.36 E-value=3.1e+02 Score=22.21 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy9793 24 RAVQKTIDREVSYVQSAANELEKT 47 (133)
Q Consensus 24 R~~QK~IEkE~~~v~~~~~eL~k~ 47 (133)
+..=..|+.++..+...++++...
T Consensus 21 ~~~L~~i~~~~~~i~~~l~~~~~~ 44 (243)
T PF07160_consen 21 KDTLSKIDQEVSAIEELLNDIEQE 44 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444443
No 131
>KOG0976|consensus
Probab=29.29 E-value=3.4e+02 Score=26.83 Aligned_cols=43 Identities=21% Similarity=0.256 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHH------HHHHHHHHHHHhh
Q psy9793 58 EVTRLLGGMFERLQALKRKAGESIGEELQV------GHVCKRRIEHLKE 100 (133)
Q Consensus 58 ~a~~~Ld~lI~rl~~LKRKL~~~~~eE~~~------~~r~k~Rl~hL~e 100 (133)
-+++.-+.||.+++++...++.-..-|.++ ..+-++||+++++
T Consensus 456 raIeQcnemv~rir~l~~sle~qrKVeqe~emlKaen~rqakkiefmkE 504 (1265)
T KOG0976|consen 456 RAIEQCNEMVDRIRALMDSLEKQRKVEQEYEMLKAENERQAKKIEFMKE 504 (1265)
T ss_pred hHHHHHHHHHHHHHHHhhChhhhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888899999999877666555444333 5566778888775
No 132
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=29.26 E-value=1.7e+02 Score=19.27 Aligned_cols=55 Identities=11% Similarity=0.183 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHh
Q psy9793 19 LNKKFRAVQKTIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAG 78 (133)
Q Consensus 19 LrKnFR~~QK~IEkE~~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKRKL~ 78 (133)
++...+..++.++..-..+...-.++...+.+.+++.+ .|..+++++..+...+.
T Consensus 50 l~~~~~~~~~~~~~~r~~~~~~r~~l~~ll~~~~~D~~-----~i~a~~~~~~~~~~~l~ 104 (125)
T PF13801_consen 50 LRALMDEFRQEMRALRQELRAARQELRALLAAPPPDEA-----AIEALLEEIREAQAELR 104 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSS-HH-----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH-----HHHHHHHHHHHHHHHHH
Confidence 44444444555555555566666667667766444433 45555555555444443
No 133
>PRK02249 DNA primase large subunit; Validated
Probab=29.23 E-value=1e+02 Score=26.46 Aligned_cols=38 Identities=21% Similarity=0.420 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCCCCCCCCCCCCCCCCC
Q psy9793 86 QVGHVCKRRIEHLKEHSGNVLSNTSPDEIPPHNTPFPPCP 125 (133)
Q Consensus 86 ~~~~r~k~Rl~hL~el~~~~~~~~~~~~~~~~~~~~~~~~ 125 (133)
+..+++...++||.+...........+.|.+ ..||||-
T Consensus 189 ~~~drl~~~l~~L~~~~~~~~~~~~~~~i~~--~~fPpCm 226 (343)
T PRK02249 189 EIAEALLPLLEEIREELEELDLETEFGTVDP--ELFPPCM 226 (343)
T ss_pred hhHHhHHHHHHHHHHHhcccccccccccccc--ccCCHHH
Confidence 4567888888888765433222234555543 4699994
No 134
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=29.20 E-value=2.5e+02 Score=23.51 Aligned_cols=45 Identities=22% Similarity=0.261 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHH---HHHHHHHHHHHhhhh
Q psy9793 58 EVTRLLGGMFERLQALKRKAGESIGEELQV---GHVCKRRIEHLKEHS 102 (133)
Q Consensus 58 ~a~~~Ld~lI~rl~~LKRKL~~~~~eE~~~---~~r~k~Rl~hL~el~ 102 (133)
.....|..+-.++..|+..+++...+-..+ +..|..|+++-+.|-
T Consensus 239 ~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li 286 (344)
T PF12777_consen 239 EKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLI 286 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHH
Confidence 345556666666777777766655443322 677888888877654
No 135
>KOG0804|consensus
Probab=29.11 E-value=4.4e+02 Score=23.94 Aligned_cols=33 Identities=15% Similarity=0.096 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q psy9793 67 FERLQALKRKAGESIGEELQVGHVCKRRIEHLK 99 (133)
Q Consensus 67 I~rl~~LKRKL~~~~~eE~~~~~r~k~Rl~hL~ 99 (133)
++-.+....|+.+....+.+.......-|.-|+
T Consensus 409 ~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLq 441 (493)
T KOG0804|consen 409 IKNQDVWRGKLKELEEREKEALGSKDEKITDLQ 441 (493)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444
No 136
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=29.08 E-value=2.6e+02 Score=24.05 Aligned_cols=41 Identities=20% Similarity=0.195 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHH------HhhHHHHHHHHHHHHHHHHHHHhhh
Q psy9793 61 RLLGGMFERLQALKRK------AGESIGEELQVGHVCKRRIEHLKEH 101 (133)
Q Consensus 61 ~~Ld~lI~rl~~LKRK------L~~~~~eE~~~~~r~k~Rl~hL~el 101 (133)
..++.+.+++..|+.+ ......+-.+.+....+|++.++++
T Consensus 249 ~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~~~~ 295 (406)
T PF02388_consen 249 EKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEAEEL 295 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444443 2334445556677788888888776
No 137
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=29.06 E-value=1.7e+02 Score=19.26 Aligned_cols=17 Identities=29% Similarity=0.501 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy9793 58 EVTRLLGGMFERLQALK 74 (133)
Q Consensus 58 ~a~~~Ld~lI~rl~~LK 74 (133)
.|...|+.||.|+..|+
T Consensus 46 ~Ar~rvEamI~RLk~le 62 (65)
T TIGR02449 46 QARQKVEAMITRLKALE 62 (65)
T ss_pred HHHHHHHHHHHhhhhhc
Confidence 67888888888887764
No 138
>KOG3614|consensus
Probab=29.03 E-value=4.7e+02 Score=26.90 Aligned_cols=74 Identities=15% Similarity=0.106 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhc
Q psy9793 26 VQKTIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAGESIGEELQVGHVCKRRIEHLKEHSG 103 (133)
Q Consensus 26 ~QK~IEkE~~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKRKL~~~~~eE~~~~~r~k~Rl~hL~el~~ 103 (133)
.+|+.+.|...+.+-+.+.......++...-.....++|.+..++..+..++.-+.+ .++.|..|+.|+.+...
T Consensus 1113 ~~kl~~fEe~~vE~~~r~~~~~~~~s~~Erir~t~~rvd~~~~~l~e~~~r~~~lk~----~v~~~~~~l~~~~~~~~ 1186 (1381)
T KOG3614|consen 1113 NKKLHTFEEVCVENFLRKREMEQNSSTEERIRRTANRVDLILNRLIELEQREKTLKD----SVQNSETRLASVLQFSE 1186 (1381)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 467788888888888887766543321111114455678888888666555554443 47888899999988643
No 139
>PRK14150 heat shock protein GrpE; Provisional
Probab=28.76 E-value=2.9e+02 Score=21.66 Aligned_cols=22 Identities=9% Similarity=0.271 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q psy9793 58 EVTRLLGGMFERLQALKRKAGE 79 (133)
Q Consensus 58 ~a~~~Ld~lI~rl~~LKRKL~~ 79 (133)
.....+..|+.-++.|.|-+..
T Consensus 86 a~~~~~~~lL~v~DnlerAl~~ 107 (193)
T PRK14150 86 ALEKFANELLPVIDNLERALQA 107 (193)
T ss_pred HHHHHHHHHHhHHhHHHHHHhc
Confidence 3456677777788888887753
No 140
>PF09748 Med10: Transcription factor subunit Med10 of Mediator complex; InterPro: IPR019145 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med10 is one of the protein subunits of the Mediator complex, tethered to Med14 (Rgr1) protein. Med10 specifically mediates basal-level HIS4 transcription via Gcn4. In addition, there is a putative requirement for Med10 in Bas2-mediated transcription []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=28.75 E-value=2.3e+02 Score=20.59 Aligned_cols=48 Identities=15% Similarity=0.206 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCC--CCCChHHHHHHHHHHHHHHHHHHHHHhh
Q psy9793 31 DREVSYVQSAANELEKTIASS--EKPPLTEVTRLLGGMFERLQALKRKAGE 79 (133)
Q Consensus 31 EkE~~~v~~~~~eL~k~l~~~--~~~~~~~a~~~Ld~lI~rl~~LKRKL~~ 79 (133)
|..+..+...+.++...+.+- ..+.+ ....+|+.+++.|+.+.+-...
T Consensus 2 e~~l~~~i~~l~el~~~v~d~~~~~s~~-~L~~ki~~lv~~L~~l~~~~~~ 51 (128)
T PF09748_consen 2 EQQLEDVIQSLYELGVIVSDFQGPPSQE-ALNQKINQLVTSLQELDKLAQQ 51 (128)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCCCcHH-HHHHHHHHHHHHHHHHHHHhcc
Confidence 455666667777776655432 23445 7777888888887776665555
No 141
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=28.66 E-value=3.8e+02 Score=23.03 Aligned_cols=15 Identities=27% Similarity=0.311 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHH
Q psy9793 31 DREVSYVQSAANELE 45 (133)
Q Consensus 31 EkE~~~v~~~~~eL~ 45 (133)
++|...+.+.+.+|+
T Consensus 3 ~eEW~eL~~efq~Lq 17 (330)
T PF07851_consen 3 EEEWEELQKEFQELQ 17 (330)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 142
>TIGR01280 xseB exodeoxyribonuclease VII, small subunit. This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides.
Probab=28.65 E-value=1.3e+02 Score=19.60 Aligned_cols=14 Identities=7% Similarity=0.544 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHh
Q psy9793 86 QVGHVCKRRIEHLK 99 (133)
Q Consensus 86 ~~~~r~k~Rl~hL~ 99 (133)
.+++.|+.+|+.-+
T Consensus 36 ~L~k~c~~~L~~ae 49 (67)
T TIGR01280 36 ALARRCEKKLAQAE 49 (67)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444433
No 143
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=28.56 E-value=2.3e+02 Score=20.38 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy9793 24 RAVQKTIDREVSYVQSAANELEK 46 (133)
Q Consensus 24 R~~QK~IEkE~~~v~~~~~eL~k 46 (133)
..+.+.+++....+...+..+.+
T Consensus 93 ~eA~~~l~~~~~~l~~~~~~l~~ 115 (140)
T PRK03947 93 DEAIEILDKRKEELEKALEKLEE 115 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 144
>PF09903 DUF2130: Uncharacterized protein conserved in bacteria (DUF2130); InterPro: IPR019219 This entry, found in various hypothetical bacterial proteins, has no known function.
Probab=28.42 E-value=2e+02 Score=23.67 Aligned_cols=29 Identities=24% Similarity=0.445 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9793 17 EILNKKFRAVQKTIDREVSYVQSAANELE 45 (133)
Q Consensus 17 ElLrKnFR~~QK~IEkE~~~v~~~~~eL~ 45 (133)
+.+-++|...++.+++|...+...+..+.
T Consensus 201 ~~~~~~~~~~~~~l~ke~~~i~k~~~k~e 229 (267)
T PF09903_consen 201 EAIVENFEDMSKDLDKEIKAIDKAWKKRE 229 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555544444444444443
No 145
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=28.04 E-value=2.9e+02 Score=24.76 Aligned_cols=73 Identities=21% Similarity=0.252 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH---HHHHHHHHHHHhh
Q psy9793 27 QKTIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAGESIGEELQV---GHVCKRRIEHLKE 100 (133)
Q Consensus 27 QK~IEkE~~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKRKL~~~~~eE~~~---~~r~k~Rl~hL~e 100 (133)
.+.++.++..++..+..+.+-+........ .++.-|..--.-++.|+.||+....++... ....+-|+..+.+
T Consensus 29 ~~~~e~eL~~~qeel~~~k~~l~~~E~~k~-~~l~ELe~akr~veel~~kLe~~~~~~~~a~~~~e~~k~r~~e~e~ 104 (522)
T PF05701_consen 29 VKEKETELEKAQEELAKLKEQLEAAEREKA-QALSELESAKRTVEELKLKLEKAQAEEKQAEEDSELAKFRAKELEQ 104 (522)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHhh
Confidence 344666777888888888776543233344 789999999999999999999888665543 3444557766644
No 146
>PF01093 Clusterin: Clusterin; InterPro: IPR000753 Clusterin is a vertebrate glycoprotein [], the exact function of which is not yet clear. Clusterin expression is complex, appearing as different forms in different cell compartments. One set of proteins is directed for secretion, and other clusterin species are expressed in the cytoplasm and nucleus. The secretory form of the clusterin protein (sCLU) is targeted to the ER by an initial leader peptide. This ~60kDa pre-sCLU protein is further glycosylated and proteolytically cleaved into alpha- and beta-subunits, held together by disulphide bonds. External sCLU is an 80kDa protein and may act as a molecular chaperone, scavenging denatured proteins outside cells following specific stress-induced injury such as heat shock. sCLU possesses nonspecific binding activity to hydrophobic domains of various proteins in vitro []. A specific nuclear form of CLU (nCLU) acts as a pro-death signal, inhibiting cell growth and survival. The nCLU protein has two coiled-coil domains, one at its N terminus that is unable to bind Ku70, and a C-terminal coiled-coil domain that is uniquely able to associate with Ku70 and is minimally required for cell death. Clusterin is synthesized as a precursor polypeptide of about 400 amino acids which is post-translationally cleaved to form two subunits of about 200 amino acids each. The two subunits are linked by five disulphide bonds to form an antiparallel ladder-like structure []. In each of the mature subunits the five cysteines that are involved in disulphide bonds are clustered in domains of about 30 amino acids located in the central part of the subunits. This entry represents the clusterin precursor and related proteins.; GO: 0008219 cell death
Probab=28.03 E-value=4.4e+02 Score=23.55 Aligned_cols=32 Identities=13% Similarity=0.243 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy9793 19 LNKKFRAVQKTIDREVSYVQSAANELEKTIAS 50 (133)
Q Consensus 19 LrKnFR~~QK~IEkE~~~v~~~~~eL~k~l~~ 50 (133)
|+.--....|.|++|+......+++++..|..
T Consensus 3 Lk~lS~~GekyvdeEik~Al~GvKqMK~~Mek 34 (436)
T PF01093_consen 3 LKELSEQGEKYVDEEIKNALNGVKQMKTMMEK 34 (436)
T ss_pred hHHHhHhCchhHHHHHHHHHHHHHHHHHHHHh
Confidence 45555677899999999999999999887754
No 147
>PF04120 Iron_permease: Low affinity iron permease ; InterPro: IPR007251 Although originally identified as a low-affinity iron(II) permease [, ], Fet4 has since been shown to import several other transition metal ions, including copper [, ] and zinc []. Copper, cobalt, and cadmium inhibit Fet4 [, ]. Fet4 is an integral protein of the plasma membrane [, ]. FET4 is not essential, not even in fet3 fet4 double mutants []. Over expression of FET4 improves growth under alkaline conditions []. Transcription of FET4 is induced by Aft1 in response to low levels of iron [, , ] or by Zap1 in response to low zinc [, ], but not in response to low copper []. When the high-affinity iron permease component Fet3 is deleted, FET4 is induced by the addition of copper, zinc, cobalt, or manganese []. It is also induced under anaerobic conditions [, , ] and repressed by Rox1 in aerobic conditions [, ]. Rox1 attenuates the activation of FET4 by Aft1 or Zap1 []. ; GO: 0055085 transmembrane transport
Probab=28.01 E-value=1.3e+02 Score=22.49 Aligned_cols=46 Identities=11% Similarity=0.104 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhc
Q psy9793 58 EVTRLLGGMFERLQALKRKAGESIGEELQVGHVCKRRIEHLKEHSG 103 (133)
Q Consensus 58 ~a~~~Ld~lI~rl~~LKRKL~~~~~eE~~~~~r~k~Rl~hL~el~~ 103 (133)
....+||.||..+.+-+-.+-..-+.+.+.+..+++|.+.+.....
T Consensus 70 al~~KLdeLi~~~~~a~n~li~iE~l~~~el~~~~~~~~~~~~~~~ 115 (132)
T PF04120_consen 70 ALQAKLDELIRAVKEARNELIDIEDLTEEELEEIRKRYERLAEQAR 115 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHHHHHHHhh
Confidence 5778899999999888888887777788889999999988877654
No 148
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=27.83 E-value=2.5e+02 Score=20.70 Aligned_cols=49 Identities=18% Similarity=0.228 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy9793 26 VQKTIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAGESIG 82 (133)
Q Consensus 26 ~QK~IEkE~~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKRKL~~~~~ 82 (133)
.++.+|+.+.....+++.|..-.. .....+......++.|++++.....
T Consensus 28 ~~~~LE~qL~~~~~~l~lLq~e~~--------~~e~~le~d~~~L~~Le~~~~~~~~ 76 (160)
T PF13094_consen 28 RKRALERQLAANLHQLELLQEEIE--------KEEAALERDYEYLQELEKNAKALER 76 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777776765432 2344555555666666665554443
No 149
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=27.72 E-value=3.3e+02 Score=22.03 Aligned_cols=75 Identities=13% Similarity=0.201 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhcCCCC--CChHHHHHHHHHHHHHHHHHHH--------HHhh
Q psy9793 16 YEILNKKFRAVQKTID------REVSYVQSAANELEKTIASSEK--PPLTEVTRLLGGMFERLQALKR--------KAGE 79 (133)
Q Consensus 16 yElLrKnFR~~QK~IE------kE~~~v~~~~~eL~k~l~~~~~--~~~~~a~~~Ld~lI~rl~~LKR--------KL~~ 79 (133)
.|.|--+.|..+|.++ +|+......++..-..+++.+. +-. .++..|..+-.++..+-. .+.+
T Consensus 31 ie~LE~qLk~L~k~~~~lv~~r~eLa~~~~eFa~s~~~L~~~E~~~~Ls-~als~laev~~~i~~~~~~qa~qd~~~f~e 109 (234)
T cd07665 31 VECEEQRLRKLHAVVETLVNHRKELALNTALFAKSLAMLGSSEDNTALS-RALSQLAEVEEKIEQLHQEQANNDFFLLAE 109 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4667777788888888 6777777777765555543211 122 344444444444443322 2344
Q ss_pred HHHHHHHHHHHH
Q psy9793 80 SIGEELQVGHVC 91 (133)
Q Consensus 80 ~~~eE~~~~~r~ 91 (133)
.+++...++..+
T Consensus 110 ~l~eYiRli~SV 121 (234)
T cd07665 110 LLADYIRLLSAV 121 (234)
T ss_pred hHHHHHHHHHHH
Confidence 445555554444
No 150
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=27.62 E-value=3.9e+02 Score=22.79 Aligned_cols=15 Identities=20% Similarity=0.390 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHhhhh
Q psy9793 88 GHVCKRRIEHLKEHS 102 (133)
Q Consensus 88 ~~r~k~Rl~hL~el~ 102 (133)
+.+|+.-++..+...
T Consensus 118 lkr~KsELErsQ~~~ 132 (307)
T PF10481_consen 118 LKRCKSELERSQQAA 132 (307)
T ss_pred HHHHHHHHHHHHHhh
Confidence 555555555554443
No 151
>PRK05658 RNA polymerase sigma factor RpoD; Validated
Probab=27.40 E-value=4.8e+02 Score=23.78 Aligned_cols=66 Identities=14% Similarity=0.224 Sum_probs=39.1
Q ss_pred cccHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhcCCCCCC---hHHHHHHHHHHHHHHHHHHHHHhh
Q psy9793 13 KVPYEILNKKFRAVQKTIDRE-------VSYVQSAANELEKTIASSEKPP---LTEVTRLLGGMFERLQALKRKAGE 79 (133)
Q Consensus 13 kVPyElLrKnFR~~QK~IEkE-------~~~v~~~~~eL~k~l~~~~~~~---~~~a~~~Ld~lI~rl~~LKRKL~~ 79 (133)
.--++.+++.|...++.+++. ...+.....++...+..=.+.+ + ..+..|..++.+++.++|.+..
T Consensus 221 ~~~~~~i~~~~~~~~~~~~k~~~g~~~~~~~~~~~r~~i~~~l~~lkL~~k~id-~Lv~~lr~~~~rIr~~Er~i~~ 296 (619)
T PRK05658 221 LEKFKALAKQYKKLRKAQEKKVEGRLAQHKKYAKLREKLKEELKSLRLTSKQID-ELVEQLRDINKRVRGQERELLR 296 (619)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 344567888888888888775 3334444444444432112222 3 4566677777777777777665
No 152
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=27.33 E-value=2.6e+02 Score=20.72 Aligned_cols=62 Identities=23% Similarity=0.246 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q psy9793 29 TIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAGESIGEELQVGHVCKRRIEHLK 99 (133)
Q Consensus 29 ~IEkE~~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKRKL~~~~~eE~~~~~r~k~Rl~hL~ 99 (133)
.++-+.......|..|.+..+ .+-..|+.+-.+|...+.++++.... ......+..||.-|.
T Consensus 25 ~le~~~~~~E~EI~sL~~K~~--------~lE~eld~~~~~l~~~k~~lee~~~~-~~~~E~l~rriq~LE 86 (143)
T PF12718_consen 25 QLEQENEQKEQEITSLQKKNQ--------QLEEELDKLEEQLKEAKEKLEESEKR-KSNAEQLNRRIQLLE 86 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHhHHHH-HHhHHHHHhhHHHHH
Confidence 344444444444555544332 23345666666666666666665332 122334555555544
No 153
>KOG0963|consensus
Probab=27.08 E-value=3.3e+02 Score=25.51 Aligned_cols=67 Identities=18% Similarity=0.223 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC----CCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhh
Q psy9793 30 IDREVSYVQSAANELEKTIASS----EKPPLTEVTRLLGGMFERLQALKRKAGESIGEELQVGHVCKRRIEHLKEHS 102 (133)
Q Consensus 30 IEkE~~~v~~~~~eL~k~l~~~----~~~~~~~a~~~Ld~lI~rl~~LKRKL~~~~~eE~~~~~r~k~Rl~hL~el~ 102 (133)
.|+++..+.+.+..+..++... ...-. .+.+.+...++-+..+++||+...+ ++-||.-|.=|+.++
T Consensus 290 kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~-~le~~l~~~~~~leel~~kL~~~sD-----YeeIK~ELsiLk~ie 360 (629)
T KOG0963|consen 290 KDSEIAQLSNDIERLEASLVEEREKHKAQIS-ALEKELKAKISELEELKEKLNSRSD-----YEEIKKELSILKAIE 360 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcc-----HHHHHHHHHHHHHhh
Confidence 5667777777666665553211 01112 4555666777777888888887754 778888888888775
No 154
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=27.03 E-value=3.2e+02 Score=21.61 Aligned_cols=43 Identities=14% Similarity=0.183 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHhh
Q psy9793 58 EVTRLLGGMFERLQALKRKAGESIGEE---LQVGHVCKRRIEHLKE 100 (133)
Q Consensus 58 ~a~~~Ld~lI~rl~~LKRKL~~~~~eE---~~~~~r~k~Rl~hL~e 100 (133)
.+....+.+-.++..|..+|.+....- ..-+..+..+|+.|.+
T Consensus 166 ~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~ 211 (237)
T PF00261_consen 166 KASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLED 211 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777777766654322 2235555556665543
No 155
>PF04961 FTCD_C: Formiminotransferase-cyclodeaminase; InterPro: IPR007044 Enzymes containing the cyclodeaminase domain function in channeling one-carbon units to the folate pool. In most cases, this domain catalyses the cyclisation of formimidoyltetrahydrofolate to methenyltetrahydrofolate as shown in reaction (1). In the methylotrophic bacterium Methylobacterium extorquens, however, it catalyses the interconversion of formyltetrahydrofolate and methylenetetrahydrofolate [],as shown in reaction (2) (1) 5-formimidoyltetrahydrofolate = 5,10-methenyltetrahydrofolate + NH(3) (2) 10- formyltetrahydrofolate = 5,10-methenyltetrahydrofolate + H(2)O In prokaryotes, this domain mostly occurs on its own, while in eukaryotes it is fused to a glutamate formiminotransferase domain (which catalyses the previous step in the pathway) to form the bifunctional enzyme formiminotransferase-cyclodeaminase []. The eukaryotic enzyme is a circular tetramer of homodimers [], while the prokaryotic enzyme is a dimer [, ]. The crystal structure of the cyclodeaminase enzyme (Q9X1P6 from SWISSPROT) from Thermaotogoa maritima has been studied []. It is a homodimer, where each monomer is composed of six alpha helices arranged in an up and down helical bundle, forming a novel fold. The location of the active site is not known, but sequence alignments revealed two clusters of conserved residues located in a deep pocket within the dimmer interface. This pocket was large enough to accommodate the reaction product and it was postulated that this is the active site.; GO: 0003824 catalytic activity, 0044237 cellular metabolic process; PDB: 2PFD_C 1O5H_B.
Probab=26.78 E-value=3e+02 Score=21.19 Aligned_cols=34 Identities=18% Similarity=0.264 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy9793 58 EVTRLLGGMFERLQALKRKAGESIGEELQVGHVC 91 (133)
Q Consensus 58 ~a~~~Ld~lI~rl~~LKRKL~~~~~eE~~~~~r~ 91 (133)
+....+..++.+++.++..|...++++.+.+...
T Consensus 49 ~~~~~~~~~~~~~~~~~~~ll~l~d~D~~af~~~ 82 (184)
T PF04961_consen 49 DVEEELKEIIEKLEELREELLDLADEDAEAFNAV 82 (184)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667899999999999999999999888776654
No 156
>KOG0239|consensus
Probab=26.44 E-value=4.4e+02 Score=24.75 Aligned_cols=43 Identities=19% Similarity=0.152 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhh
Q psy9793 58 EVTRLLGGMFERLQALKRKAGESIGEELQVGHVCKRRIEHLKEH 101 (133)
Q Consensus 58 ~a~~~Ld~lI~rl~~LKRKL~~~~~eE~~~~~r~k~Rl~hL~el 101 (133)
+....+..++..+..+...+.+.. .|...-.++..+|..|+..
T Consensus 273 ~~~~~~~~~~~~L~~~~~~l~~~~-~e~~~r~kL~N~i~eLkGn 315 (670)
T KOG0239|consen 273 EALKESNTLQSDLESLEENLVEKK-KEKEERRKLHNEILELKGN 315 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcC
Confidence 567777777888888888888888 8889999999999999864
No 157
>PF07361 Cytochrom_B562: Cytochrome b562; InterPro: IPR009155 Cytochrome b562 is a haem-containing protein that is expressed in the periplasm of Escherichia coli. In b-type cytochromes, the haem atom is not covalently attached to the polypeptide. Cytochrome b562 has a four-helical bundle structure that is structurally similar to that found in members of the cytochrome c family (IPR002321 from INTERPRO). Cytochrome b562 has a reduction potential of 167 mV, which sets the energy yield possible in metabolism and is also a key determinant of the rate at which redox reactions proceed [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0042597 periplasmic space; PDB: 4ER9_A 3IQ6_G 2QLA_B 3FOO_A 3M79_C 256B_A 3NMI_F 3HNK_A 3NMK_D 2BC5_A ....
Probab=26.42 E-value=2.3e+02 Score=19.80 Aligned_cols=66 Identities=9% Similarity=0.182 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCCCCh------HHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy9793 17 EILNKKFRAVQKTIDREVSYVQSAANELEKTIA----SSEKPPL------TEVTRLLGGMFERLQALKRKAGESIGEE 84 (133)
Q Consensus 17 ElLrKnFR~~QK~IEkE~~~v~~~~~eL~k~l~----~~~~~~~------~~a~~~Ld~lI~rl~~LKRKL~~~~~eE 84 (133)
..++++|+.+++. .....+...+..+...+. +.+...+ +.-.+-|+.+|..++..+..++..--+|
T Consensus 8 ~~m~~~~k~~~~a--~~~~e~~~~l~~m~~~a~~ak~~~P~~~~~d~~~~~~Y~~Gl~~li~~id~a~~~~~~G~l~~ 83 (103)
T PF07361_consen 8 KQMKKNYKQAAKA--DDAAEMKTALDKMRAAAEDAKQGKPPKLEGDSAEVKDYQEGLDKLIDQIDKAEALAEAGKLDE 83 (103)
T ss_dssp HHHHHHHHHHHHS--SSHHHHHHHHHHHHHHHHHHTTTS-GGGTTTSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
Confidence 4688999999885 466666666766665431 1111111 1467889999999999999888876555
No 158
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=26.21 E-value=3.7e+02 Score=22.05 Aligned_cols=66 Identities=17% Similarity=0.183 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhh
Q psy9793 33 EVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAGESIGEELQVGHVCKRRIEHLKEH 101 (133)
Q Consensus 33 E~~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKRKL~~~~~eE~~~~~r~k~Rl~hL~el 101 (133)
|-..|...+..|...-.. .+|.+|-..|...|.|-=.-==.|.+.+--.+..|++..+||+-|+.-
T Consensus 5 E~qLI~~lf~RL~~ae~~---prD~eAe~lI~~~~~~qP~A~Y~laQ~vlvQE~AL~~a~~ri~eLe~q 70 (247)
T PF09849_consen 5 ERQLIDDLFSRLKQAEAQ---PRDPEAEALIAQALARQPDAPYYLAQTVLVQEQALKQAQARIQELEAQ 70 (247)
T ss_pred HHHHHHHHHHHHHhccCC---CCCHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666554322 344467778877777655555567777777778899999999999865
No 159
>COG3404 Methenyl tetrahydrofolate cyclohydrolase [Amino acid transport and metabolism]
Probab=26.16 E-value=3.5e+02 Score=21.85 Aligned_cols=36 Identities=14% Similarity=0.139 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy9793 58 EVTRLLGGMFERLQALKRKAGESIGEELQVGHVCKR 93 (133)
Q Consensus 58 ~a~~~Ld~lI~rl~~LKRKL~~~~~eE~~~~~r~k~ 93 (133)
+.-.....++++++.+|..|...++++.+.+.++-+
T Consensus 54 ~~d~e~k~i~~~~~~ik~~l~~lidkD~eAf~~im~ 89 (208)
T COG3404 54 DYDDEMKEILEELQKIKAELLALIDKDEEAFNLIMA 89 (208)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 344556668999999999999999998888777644
No 160
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=25.85 E-value=3.6e+02 Score=22.59 Aligned_cols=67 Identities=16% Similarity=0.165 Sum_probs=45.6
Q ss_pred cCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy9793 9 HPTLKVPYEILNKKFRAVQKTIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAGESIG 82 (133)
Q Consensus 9 ~p~lkVPyElLrKnFR~~QK~IEkE~~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKRKL~~~~~ 82 (133)
--+|-.-|-..|++.+..-+.+++=...-...+.+.....+. .....||..++.-..|++++...+.
T Consensus 20 g~~f~~~i~si~~n~s~~e~~i~qi~~~h~d~L~Ev~e~~~~-------~~~~~ldnf~s~t~~Lq~~~k~di~ 86 (280)
T COG5074 20 GVTFMNKILSINKNLSVYEKEINQIDNLHKDLLTEVFEEQSR-------KLRRSLDNFSSQTTDLQRNLKKDIK 86 (280)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 345666677888888877777776555555555555543321 4677888888888888888876553
No 161
>KOG3647|consensus
Probab=25.73 E-value=3.1e+02 Score=23.47 Aligned_cols=43 Identities=16% Similarity=0.257 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHH----------HHHHHHHHHHHhhh
Q psy9793 59 VTRLLGGMFERLQALKRKAGESIGEELQV----------GHVCKRRIEHLKEH 101 (133)
Q Consensus 59 a~~~Ld~lI~rl~~LKRKL~~~~~eE~~~----------~~r~k~Rl~hL~el 101 (133)
....|..+..+++.++.+|+...-.|..+ +.+.++|++-|+.+
T Consensus 110 lk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~Lqsi 162 (338)
T KOG3647|consen 110 LKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSI 162 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445555555666666655555444332 45555666555543
No 162
>COG5280 Phage-related minor tail protein [Function unknown]
Probab=25.71 E-value=3e+02 Score=25.88 Aligned_cols=61 Identities=8% Similarity=0.097 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCChHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy9793 18 ILNKKFRAVQKTIDREVSYVQSAANELEKTIASS-EKPPLTEVTRLLGGMFERLQALKRKAGESIGE 83 (133)
Q Consensus 18 lLrKnFR~~QK~IEkE~~~v~~~~~eL~k~l~~~-~~~~~~~a~~~Ld~lI~rl~~LKRKL~~~~~e 83 (133)
.|+.+|...+|.+. .+...+++..+.+..+ +.+.. .+...+..|...+.....++..+..+
T Consensus 19 gl~~~f~~v~~~~~----~l~selkd~g~~~k~~~~~~~~-~~aq~~~lL~g~v~~~v~~~~~l~k~ 80 (634)
T COG5280 19 GLNGAFERVKRESN----SLGSELKDAGELFKRNISASTE-ALAQRIQLLTGQVTLTVKNLDDLAKQ 80 (634)
T ss_pred hhhHHHHHHHHHhh----hhhhHHHHHHHHHhccccccHH-HHHHHHHHHhhhHHHhhhhhhHHHHH
Confidence 46777777666555 4777777777766543 23333 44444455555555544444444433
No 163
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=25.50 E-value=3.1e+02 Score=26.89 Aligned_cols=39 Identities=18% Similarity=0.307 Sum_probs=25.0
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy9793 12 LKVPYEILNKKFRAVQKTIDREVSYVQSAANELEKTIASS 51 (133)
Q Consensus 12 lkVPyElLrKnFR~~QK~IEkE~~~v~~~~~eL~k~l~~~ 51 (133)
+.+|.+.+--.-.... -+++|+..+.+.+..+.+.+++.
T Consensus 830 v~l~l~~~iD~~~e~~-rLekel~kl~Kel~kl~~~L~n~ 868 (1052)
T PRK14900 830 VRVPLAGVIDLAAETA-RVDKEIGKVDQDLAVLERKLQNP 868 (1052)
T ss_pred EEEECCcccCHHHHHh-hHHHHHHHHHHHHHHHHHHhcCc
Confidence 4555444332223333 38888888888888888887753
No 164
>PF15112 DUF4559: Domain of unknown function (DUF4559)
Probab=25.17 E-value=4.4e+02 Score=22.56 Aligned_cols=80 Identities=19% Similarity=0.192 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy9793 17 EILNKKFRAVQKTIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAGESIGEELQVGHVCKRRIE 96 (133)
Q Consensus 17 ElLrKnFR~~QK~IEkE~~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKRKL~~~~~eE~~~~~r~k~Rl~ 96 (133)
+..-+.+...+...++|+..+...+.++--.+..+...++ +..+.|..+..=|+. -+-|...-.+|...++.+..|+.
T Consensus 214 ~~~~~~~~~~~~i~e~e~e~Lke~lqel~~~~e~~~~~~e-e~~~~l~~~~~fL~~-NkDL~~~l~~e~qkL~~l~~k~~ 291 (307)
T PF15112_consen 214 ESETDVYLSESQILEIEMELLKEKLQELYLQAEEQEVLPE-EDSKRLEVLKEFLRN-NKDLRSNLQEELQKLDSLQTKHQ 291 (307)
T ss_pred hhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccch-hhhHHHHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455667778889999999999999998555544333333 333443333332222 22333344444555555555544
Q ss_pred HH
Q psy9793 97 HL 98 (133)
Q Consensus 97 hL 98 (133)
-+
T Consensus 292 ~~ 293 (307)
T PF15112_consen 292 KL 293 (307)
T ss_pred ch
Confidence 33
No 165
>KOG1760|consensus
Probab=25.06 E-value=2.8e+02 Score=20.86 Aligned_cols=41 Identities=20% Similarity=0.161 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhh
Q psy9793 61 RLLGGMFERLQALKRKAGESIGEELQVGHVCKRRIEHLKEH 101 (133)
Q Consensus 61 ~~Ld~lI~rl~~LKRKL~~~~~eE~~~~~r~k~Rl~hL~el 101 (133)
-.++.+...|.+-|..+++.+.+=..-+..|.+|++-|+..
T Consensus 77 ~~~~~~~~~LEe~ke~l~k~i~~les~~e~I~~~m~~LK~~ 117 (131)
T KOG1760|consen 77 VKLDKLQDQLEEKKETLEKEIEELESELESISARMDELKKV 117 (131)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777888888888888887777899999999999863
No 166
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=24.88 E-value=1.7e+02 Score=17.76 Aligned_cols=36 Identities=14% Similarity=0.233 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy9793 61 RLLGGMFERLQALKRKAGESIGEELQVGHVCKRRIE 96 (133)
Q Consensus 61 ~~Ld~lI~rl~~LKRKL~~~~~eE~~~~~r~k~Rl~ 96 (133)
..|.+-|..|..+=.-+...+.+..+.+++|...++
T Consensus 7 ~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd 42 (63)
T PF05739_consen 7 DELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVD 42 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHH
Confidence 333333444444444444444444444444444433
No 167
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=24.84 E-value=1.9e+02 Score=18.36 Aligned_cols=24 Identities=17% Similarity=0.455 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCC
Q psy9793 28 KTIDREVSYVQSAANELEKTIASS 51 (133)
Q Consensus 28 K~IEkE~~~v~~~~~eL~k~l~~~ 51 (133)
.-+++++..+...+..+.+.+++.
T Consensus 7 ~rL~Kel~kl~~~i~~~~~kL~n~ 30 (66)
T PF10458_consen 7 ERLEKELEKLEKEIERLEKKLSNE 30 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCc
Confidence 346677778888888888877764
No 168
>PF13234 rRNA_proc-arch: rRNA-processing arch domain; PDB: 4A4K_E 4A4Z_A 2XGJ_B 3L9O_A.
Probab=24.79 E-value=2.4e+02 Score=22.55 Aligned_cols=62 Identities=16% Similarity=0.257 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy9793 17 EILNKKFRAVQKTIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAGESI 81 (133)
Q Consensus 17 ElLrKnFR~~QK~IEkE~~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKRKL~~~~ 81 (133)
++++|+|.+.|.. +.+-.+...++++...+++-..... ..+...-.+-..+..+.+++...+
T Consensus 2 ~mikrSF~qfq~~--~~lP~~~~~~~~~e~~~~~i~~~~~-~~v~~y~~l~~~l~~~~~~~~~~i 63 (268)
T PF13234_consen 2 YMIKRSFSQFQNQ--RKLPELEKKLKELEEELDAIKIEDE-EDVEEYYDLRQELEELRKELRKII 63 (268)
T ss_dssp HHHHCSHHHHHHH--HHHHHHHHHHHHHHHHHHCS--TTC-TCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHhHHHHccc--ccCHHHHHHHHHHHHHHHhcccccH-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999877654 4556666666666655443212222 344444555555555555555554
No 169
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=24.54 E-value=2.3e+02 Score=19.17 Aligned_cols=35 Identities=23% Similarity=0.205 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q psy9793 61 RLLGGMFERLQALKRKAGESIGEELQVGHVCKRRIEHLK 99 (133)
Q Consensus 61 ~~Ld~lI~rl~~LKRKL~~~~~eE~~~~~r~k~Rl~hL~ 99 (133)
..+..+-++++.++.++....++ ++..++++.+|+
T Consensus 70 ~~~~~l~~~l~~l~~~~~~~~~~----~~~~~~~~~~L~ 104 (104)
T PF13600_consen 70 PELKELEEELEALEDELAALQDE----IQALEAQIAFLQ 104 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhC
Confidence 45555555566666655555443 667777777764
No 170
>PF12308 Noelin-1: Neurogenesis glycoprotein; InterPro: IPR022082 This domain family is found in eukaryotes, and is approximately 100 amino acids in length. The family is found in association with PF02191 from PFAM. There are two conserved sequence motifs: SAQ and VQN. Noelin-1 is a glycoprotein which is secreted mainly by postmitotic neurogenic tissues in the developing central and peripheral nervous systems, first appearing after neural tube closure. It is likely that it forms large multimeric complexes.It has a divergent function in neurogenesis. In animal caps neuralized by expression of noggin, co-expression of Noelin-1 causes expression of neuronal differentiation markers several stages before neurogenesis normally occurs in this tissue. Finally, only secreted forms of the protein can activate sensory marker expression, while all forms of the protein can induce early neurogenesis.
Probab=24.47 E-value=2.7e+02 Score=20.01 Aligned_cols=55 Identities=11% Similarity=0.195 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy9793 24 RAVQKTIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAGESIGEELQV 87 (133)
Q Consensus 24 R~~QK~IEkE~~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKRKL~~~~~eE~~~ 87 (133)
|...-++| .+.+++.++.-|+.... -.+.-+..|...|++|+.|+....+.-..+
T Consensus 40 ~qlrqlle-kVqNmSqsievL~~RT~--------rdlqyv~~~E~~mk~l~~k~~~~e~~~~~l 94 (101)
T PF12308_consen 40 RQLRQLLE-KVQNMSQSIEVLDLRTQ--------RDLQYVRKMETQMKGLESKFRQVEDDRKSL 94 (101)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHhhcc--------chHHHHHHHHHHHHHHHHHHHHHhcCHHHh
Confidence 33334444 77788888877765432 235667788888999999988766554433
No 171
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=24.40 E-value=3.5e+02 Score=21.16 Aligned_cols=41 Identities=17% Similarity=0.229 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q psy9793 58 EVTRLLGGMFERLQALKRKAGESIGEELQVGHVCKRRIEHLK 99 (133)
Q Consensus 58 ~a~~~Ld~lI~rl~~LKRKL~~~~~eE~~~~~r~k~Rl~hL~ 99 (133)
.....|......+..|+++|.. +..+...+...++|+.-+.
T Consensus 59 ~L~epL~~a~~e~~eL~k~L~~-y~kdK~~L~~~k~rl~~~e 99 (201)
T PF13851_consen 59 RLSEPLKKAEEEVEELRKQLKN-YEKDKQSLQNLKARLKELE 99 (201)
T ss_pred HHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 4566777788888888888887 4566777888888887654
No 172
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=24.32 E-value=2.9e+02 Score=20.20 Aligned_cols=58 Identities=19% Similarity=0.295 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy9793 20 NKKFRAVQKTIDREVSYVQS-AANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAGESIG 82 (133)
Q Consensus 20 rKnFR~~QK~IEkE~~~v~~-~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKRKL~~~~~ 82 (133)
...|+..++.+++.+..+-+ ....+++++.+ . . .++..++.--+++..+|..|.++..
T Consensus 42 ~~~f~~~~~~~~~~L~~vV~eh~q~Fn~sI~s--y--~-~i~~~i~~sq~~i~~lK~~L~~ak~ 100 (142)
T PF04048_consen 42 YQEFEELKKRIEKALQEVVNEHYQGFNSSIGS--Y--S-QILSSISESQERIRELKESLQEAKS 100 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H--H-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666555433 33344544321 0 1 5666666666777777776666543
No 173
>PRK14068 exodeoxyribonuclease VII small subunit; Provisional
Probab=24.32 E-value=1.9e+02 Score=19.45 Aligned_cols=6 Identities=0% Similarity=-0.346 Sum_probs=2.6
Q ss_pred CCCCCh
Q psy9793 51 SEKPPL 56 (133)
Q Consensus 51 ~~~~~~ 56 (133)
++++-+
T Consensus 25 gdl~Le 30 (76)
T PRK14068 25 ETVSLE 30 (76)
T ss_pred CCCCHH
Confidence 344444
No 174
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=24.20 E-value=5.6e+02 Score=23.46 Aligned_cols=60 Identities=20% Similarity=0.288 Sum_probs=44.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHh
Q psy9793 15 PYEILNKKFRAVQKTIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAG 78 (133)
Q Consensus 15 PyElLrKnFR~~QK~IEkE~~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKRKL~ 78 (133)
-||.|.|..+...+.++.|...+......|.+.... -.. +=.+++..+-.+++.|+.-++
T Consensus 141 q~~~LekAl~~~~~i~~~E~~~l~~L~~AL~kE~~~---Rt~-dE~~mv~~yr~ki~aL~~aIe 200 (508)
T PF00901_consen 141 QIEILEKALKSYGKIVKEENKQLDRLARALQKESRE---RTQ-DERKMVEEYRQKIDALKNAIE 200 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccH-HHHHHHHHHHHHHHHHHHHHH
Confidence 378899999999999999999988877777664321 112 456788888888888776554
No 175
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=24.09 E-value=2.9e+02 Score=20.78 Aligned_cols=33 Identities=12% Similarity=0.071 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHH
Q psy9793 35 SYVQSAANELEKTIASSEKPPLTEVTRLLGGMFER 69 (133)
Q Consensus 35 ~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~r 69 (133)
.-+.+-++-|-..+++|+++.. ++..|..|.+-
T Consensus 68 ~D~~KRL~iLfd~ln~g~Ls~~--v~~~L~~L~~a 100 (157)
T PF07304_consen 68 DDIEKRLNILFDHLNNGKLSKP--VVDKLHQLAQA 100 (157)
T ss_dssp HHHHHHHHHHHHHHHHT-S-HH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCHH--HHHHHHHHHHH
Confidence 3444444444444444444433 34444444433
No 176
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=24.07 E-value=2.8e+02 Score=19.99 Aligned_cols=41 Identities=27% Similarity=0.454 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHH---HHHHHHHHHHHh
Q psy9793 59 VTRLLGGMFERLQALKRKAGESIGEELQV---GHVCKRRIEHLK 99 (133)
Q Consensus 59 a~~~Ld~lI~rl~~LKRKL~~~~~eE~~~---~~r~k~Rl~hL~ 99 (133)
.-..|..+.+.|..||..+.+++.|-..+ -+.++.|++-++
T Consensus 13 le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~ 56 (110)
T PRK13169 13 LEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELE 56 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44567788888999999999988776554 456777777653
No 177
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=24.02 E-value=2.5e+02 Score=19.44 Aligned_cols=43 Identities=12% Similarity=0.169 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-HHHHHHhhh
Q psy9793 59 VTRLLGGMFERLQALKRKAGESIGEELQVGHVCK-RRIEHLKEH 101 (133)
Q Consensus 59 a~~~Ld~lI~rl~~LKRKL~~~~~eE~~~~~r~k-~Rl~hL~el 101 (133)
+-..||.|=.-|+.|+.|-..+..+=.++++..+ .|.++=++.
T Consensus 31 ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~~~ 74 (83)
T PF03670_consen 31 INSMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEFQEQL 74 (83)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344555555555555555555544444444443 344443333
No 178
>KOG0744|consensus
Probab=23.93 E-value=2.6e+02 Score=24.77 Aligned_cols=19 Identities=26% Similarity=0.557 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy9793 58 EVTRLLGGMFERLQALKRK 76 (133)
Q Consensus 58 ~a~~~Ld~lI~rl~~LKRK 76 (133)
+++.-++.++.+++.+||-
T Consensus 277 DaIRvVNalLTQlDrlK~~ 295 (423)
T KOG0744|consen 277 DAIRVVNALLTQLDRLKRY 295 (423)
T ss_pred hHHHHHHHHHHHHHHhccC
Confidence 6999999999999999985
No 179
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=23.92 E-value=3e+02 Score=23.55 Aligned_cols=44 Identities=14% Similarity=0.165 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhh
Q psy9793 59 VTRLLGGMFERLQALKRKAGESIGEELQVGHVCKRRIEHLKEHS 102 (133)
Q Consensus 59 a~~~Ld~lI~rl~~LKRKL~~~~~eE~~~~~r~k~Rl~hL~el~ 102 (133)
....++.+-+++..++..+++........-.+++.=.+.+.+++
T Consensus 142 l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlE 185 (370)
T PF02994_consen 142 LNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLE 185 (370)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888888888777665555444443334444443
No 180
>PF10979 DUF2786: Protein of unknown function (DUF2786); InterPro: IPR024498 This domain is found in proteins that have no known function.
Probab=23.77 E-value=1.6e+02 Score=17.69 Aligned_cols=15 Identities=20% Similarity=0.326 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHhh
Q psy9793 65 GMFERLQALKRKAGE 79 (133)
Q Consensus 65 ~lI~rl~~LKRKL~~ 79 (133)
.++.|++.|-++.+.
T Consensus 2 kil~kI~kLLalA~~ 16 (43)
T PF10979_consen 2 KILEKIRKLLALAES 16 (43)
T ss_pred hHHHHHHHHHHHhhC
Confidence 455666666666665
No 181
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain. DPSL (DPS-like). DPSL is a phylogenetically distinct class within the ferritin-like superfamily, and similar in many ways to the DPS (DNA Protecting protein under Starved conditions) proteins. Like DPS, these proteins are expressed in response to oxidative stress, form dodecameric cage-like particles, preferentially utilize hydrogen peroxide in the controlled oxidation of iron, and possess a short N-terminal extension implicated in stabilizing cellular DNA. This domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. These proteins are distantly related to bacterial ferritins which assemble 24 monomers, each of which have a four-helix bundle with a fifth shorter helix at the C terminus and a diiron (ferroxidase) center. Ferritins contain a center where oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical
Probab=23.73 E-value=1.7e+02 Score=20.60 Aligned_cols=34 Identities=24% Similarity=0.243 Sum_probs=29.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhc
Q psy9793 70 LQALKRKAGESIGEELQVGHVCKRRIEHLKEHSG 103 (133)
Q Consensus 70 l~~LKRKL~~~~~eE~~~~~r~k~Rl~hL~el~~ 103 (133)
+.++...+++...+|...++.+..||..|.....
T Consensus 37 f~~l~~~~~~~~~ee~~Had~laEri~~lGg~p~ 70 (148)
T cd01052 37 GEGIKEELEEAAEEELNHAELLAERIYELGGTPP 70 (148)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 6689999999999999999999999999865543
No 182
>PHA03395 p10 fibrous body protein; Provisional
Probab=23.68 E-value=2.7e+02 Score=19.55 Aligned_cols=50 Identities=16% Similarity=0.258 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q psy9793 23 FRAVQKTIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKA 77 (133)
Q Consensus 23 FR~~QK~IEkE~~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKRKL 77 (133)
.|..-|.++--+.+++..+.++...+ .+.+ +.-.+||+.-.+|..+.-|+
T Consensus 9 Ir~dIkavd~KVdalQ~~V~~l~~nl----pdv~-~l~~kLdaq~~~Ltti~tkv 58 (87)
T PHA03395 9 IRQDIKAVSDKVDALQAAVDDVRANL----PDVT-EINEKLDAQSASLDTISSAV 58 (87)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhcC----CcHH-HHHHHHHhHHHHHHHHHHHH
Confidence 45666667777777777777775432 1223 44455555555554443333
No 183
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.63 E-value=4.3e+02 Score=21.94 Aligned_cols=38 Identities=26% Similarity=0.145 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHH-HHHHHHHH-HHHHHHHHH
Q psy9793 61 RLLGGMFERLQALKRKAGESI-GEELQVGH-VCKRRIEHL 98 (133)
Q Consensus 61 ~~Ld~lI~rl~~LKRKL~~~~-~eE~~~~~-r~k~Rl~hL 98 (133)
..++.|-.+++.|..+++++. .++.+... .+..|+++.
T Consensus 56 ~~~~~l~~Ql~~l~g~i~~L~~~~~~q~q~~~~~~~qe~~ 95 (262)
T COG1729 56 YRLTQLEQQLRQLQGKIEELRGIQELQYQNNQNVERQEEN 95 (262)
T ss_pred hccHHHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666655 23333333 444444443
No 184
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=23.62 E-value=2.1e+02 Score=21.01 Aligned_cols=39 Identities=21% Similarity=0.379 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHH---HHHHHHHHHH
Q psy9793 59 VTRLLGGMFERLQALKRKAGESIGEELQV---GHVCKRRIEH 97 (133)
Q Consensus 59 a~~~Ld~lI~rl~~LKRKL~~~~~eE~~~---~~r~k~Rl~h 97 (133)
.-..|..+...+.+||.-+.+.+.|-..+ -..++.|+.+
T Consensus 13 le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 13 LEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 33567778888999999999998776544 5678888888
No 185
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=23.47 E-value=46 Score=27.70 Aligned_cols=17 Identities=47% Similarity=0.897 Sum_probs=12.7
Q ss_pred CCC---CCCCCC-CCCccccc
Q psy9793 114 IPP---HNTPFP-PCPATRCL 130 (133)
Q Consensus 114 ~~~---~~~~~~-~~~~~~~~ 130 (133)
+|. ++-||| ||=|+|++
T Consensus 164 Lp~~~~~~~Pfp~p~La~Ri~ 184 (295)
T cd01997 164 LPEEIVERHPFPGPGLAVRIL 184 (295)
T ss_pred CCchhhCCCCCCCCcceeEEe
Confidence 566 677866 89999973
No 186
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=23.08 E-value=3.5e+02 Score=23.26 Aligned_cols=36 Identities=11% Similarity=0.170 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Q psy9793 61 RLLGGMFERLQALKRKAGESIGEELQVGHVCKRRIEHLKE 100 (133)
Q Consensus 61 ~~Ld~lI~rl~~LKRKL~~~~~eE~~~~~r~k~Rl~hL~e 100 (133)
..+--+-.+++.|+++|.+...+ ++..+++|.|-++
T Consensus 175 D~v~LLqkk~~~l~~~l~~~~~e----L~~~~k~L~faqe 210 (323)
T PF08537_consen 175 DRVILLQKKIDELEERLNDLEKE----LEITKKDLKFAQE 210 (323)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 44555567777777777766554 5566777777654
No 187
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=23.00 E-value=3.3e+02 Score=20.38 Aligned_cols=59 Identities=15% Similarity=0.142 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy9793 21 KKFRAVQKTIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAGESIGEELQV 87 (133)
Q Consensus 21 KnFR~~QK~IEkE~~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKRKL~~~~~eE~~~ 87 (133)
--|+-..+.++.--..|.+.+.+..+... ++...+...-.++...+.+.++.+++-...
T Consensus 38 ~l~kpi~~~l~~R~~~I~~~l~~Ae~~~~--------eA~~~~~e~e~~L~~a~~ea~~ii~~A~~~ 96 (175)
T PRK14472 38 IAWGPILSALEEREKGIQSSIDRAHSAKD--------EAEAILRKNRELLAKADAEADKIIREGKEY 96 (175)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777776655421 344555555555555555555555444333
No 188
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=22.83 E-value=4e+02 Score=22.00 Aligned_cols=46 Identities=20% Similarity=0.302 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhh
Q psy9793 57 TEVTRLLGGMFERLQALKRKAGESIGEELQVGHVCKRRIEHLKEHS 102 (133)
Q Consensus 57 ~~a~~~Ld~lI~rl~~LKRKL~~~~~eE~~~~~r~k~Rl~hL~el~ 102 (133)
+..-..+.-+=++++.|++++++......+....++..|..|.+..
T Consensus 2 ~~l~~l~~pl~e~l~~~~~~l~~~~~~~~~~~~~L~~~l~~l~~~~ 47 (304)
T PF02646_consen 2 EQLEQLLKPLKEQLEKFEKRLEESFEQRSEEFGSLKEQLKQLSEAN 47 (304)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 189
>KOG1318|consensus
Probab=22.82 E-value=5.4e+02 Score=22.84 Aligned_cols=85 Identities=16% Similarity=0.166 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCC-----CCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---H
Q psy9793 16 YEILNKKFRAVQKTIDR-EVSYVQSAANELEKTIASS-----EKPPLTEVTRLLGGMFERLQALKRKAGESIGEEL---Q 86 (133)
Q Consensus 16 yElLrKnFR~~QK~IEk-E~~~v~~~~~eL~k~l~~~-----~~~~~~~a~~~Ld~lI~rl~~LKRKL~~~~~eE~---~ 86 (133)
+..=-|.=|..|+.||| --..|++-|++|.+.+-.. ...+. -+++.--..|.+++.-..++.+...... .
T Consensus 226 ~~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKg-tILk~s~dYIr~Lqq~~q~~~E~~~rqk~le~ 304 (411)
T KOG1318|consen 226 ALERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKG-TILKASCDYIRELQQTLQRARELENRQKKLES 304 (411)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccc-hhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHh
Confidence 33334455889999998 4567888899998874211 12233 2333333333333222222222222221 2
Q ss_pred HHHHHHHHHHHHhhh
Q psy9793 87 VGHVCKRRIEHLKEH 101 (133)
Q Consensus 87 ~~~r~k~Rl~hL~el 101 (133)
-.+.+..|++.|+..
T Consensus 305 ~n~~L~~rieeLk~~ 319 (411)
T KOG1318|consen 305 TNQELALRIEELKSE 319 (411)
T ss_pred HHHHHHHHHHHHHHH
Confidence 256677788888764
No 190
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=22.67 E-value=3.8e+02 Score=20.95 Aligned_cols=24 Identities=8% Similarity=0.389 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy9793 23 FRAVQKTIDREVSYVQSAANELEK 46 (133)
Q Consensus 23 FR~~QK~IEkE~~~v~~~~~eL~k 46 (133)
|+-..+.++.--..|.+.+.+..+
T Consensus 70 ~kPi~~~L~~R~~~I~~~L~~Ae~ 93 (205)
T PRK06231 70 WKPTQRFLNKRKELIEAEINQANE 93 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555444
No 191
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=22.57 E-value=3.8e+02 Score=24.10 Aligned_cols=52 Identities=13% Similarity=0.148 Sum_probs=0.0
Q ss_pred hcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Q psy9793 48 IASSEKPPLTEVTRLLGGMFERLQALKRKAGESIGEELQVGHVCKRRIEHLKE 100 (133)
Q Consensus 48 l~~~~~~~~~~a~~~Ld~lI~rl~~LKRKL~~~~~eE~~~~~r~k~Rl~hL~e 100 (133)
..+|.++.+ +.-..+..|.+++..+|.++.+.+++...-....-.+.+.|..
T Consensus 2 ~~~~~l~~e-dl~~~I~~L~~~i~~~k~eV~~~I~~~y~df~~~~~~~~~L~~ 53 (593)
T PF06248_consen 2 ASSGPLSKE-DLRKSISRLSRRIEELKEEVHSMINKKYSDFSPSLQSAKDLIE 53 (593)
T ss_pred CCCCCCCHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
No 192
>PF05929 Phage_GPO: Phage capsid scaffolding protein (GPO) serine peptidase; InterPro: IPR009228 This entry is represented by Bacteriophage P2, GpO. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacteriophage capsid scaffolding protein (GpO) and some related bacterial sequences. GpO is thought to function in both the assembly of proheads and the cleavage of GpN [].; GO: 0019069 viral capsid assembly
Probab=22.52 E-value=4.2e+02 Score=22.16 Aligned_cols=34 Identities=15% Similarity=0.068 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy9793 63 LGGMFERLQALKRKAGESIGEELQVGHVCKRRIE 96 (133)
Q Consensus 63 Ld~lI~rl~~LKRKL~~~~~eE~~~~~r~k~Rl~ 96 (133)
+......+..++.++....++-...+..++.+|+
T Consensus 219 ls~~~~~~~~~~~~l~~~~~~~~~~f~~L~~~L~ 252 (276)
T PF05929_consen 219 LSEQETQVAELKQELKEQHEALTEDFAALKEKLS 252 (276)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhh
Confidence 3333444444444444433333334444444444
No 193
>PRK00736 hypothetical protein; Provisional
Probab=22.38 E-value=2.3e+02 Score=18.42 Aligned_cols=20 Identities=15% Similarity=0.411 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q psy9793 81 IGEELQVGHVCKRRIEHLKE 100 (133)
Q Consensus 81 ~~eE~~~~~r~k~Rl~hL~e 100 (133)
+-+....++++.+++..|.+
T Consensus 28 v~~Qq~~i~~L~~ql~~L~~ 47 (68)
T PRK00736 28 LAEQWKTVEQMRKKLDALTE 47 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344445566666666643
No 194
>KOG0994|consensus
Probab=22.34 E-value=3.7e+02 Score=27.68 Aligned_cols=31 Identities=16% Similarity=0.219 Sum_probs=17.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhhh
Q psy9793 72 ALKRKAGESIGEELQVGHVCKRRIEHLKEHS 102 (133)
Q Consensus 72 ~LKRKL~~~~~eE~~~~~r~k~Rl~hL~el~ 102 (133)
.-+++++++.++-.+++.....-++.|++|+
T Consensus 1686 ~ar~rAe~L~~eA~~Ll~~a~~kl~~l~dLe 1716 (1758)
T KOG0994|consen 1686 AARERAEQLRTEAEKLLGQANEKLDRLKDLE 1716 (1758)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555556555554
No 195
>KOG4643|consensus
Probab=22.06 E-value=6.7e+02 Score=25.30 Aligned_cols=35 Identities=23% Similarity=0.171 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q psy9793 65 GMFERLQALKRKAGESIGEELQVGHVCKRRIEHLK 99 (133)
Q Consensus 65 ~lI~rl~~LKRKL~~~~~eE~~~~~r~k~Rl~hL~ 99 (133)
..++++...+-++.+-+.+....+.....+++-|.
T Consensus 502 ~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe 536 (1195)
T KOG4643|consen 502 LELSRLHALKNELKEQYKTCDIQYELLSNKLEELE 536 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555554444444444444433
No 196
>KOG0018|consensus
Probab=21.93 E-value=8.3e+02 Score=24.66 Aligned_cols=29 Identities=28% Similarity=0.459 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9793 16 YEILNKKFRAVQKTIDREVSYVQSAANEL 44 (133)
Q Consensus 16 yElLrKnFR~~QK~IEkE~~~v~~~~~eL 44 (133)
.+.||+++|.-|-.++.+.......-+.+
T Consensus 383 l~~ln~~~r~~~~~ld~~~~~~~elE~r~ 411 (1141)
T KOG0018|consen 383 LEVLNRNMRSDQDTLDHELERRAELEARI 411 (1141)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45788999998888888776665544443
No 197
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=21.93 E-value=4.4e+02 Score=21.44 Aligned_cols=61 Identities=18% Similarity=0.238 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy9793 19 LNKKFRAVQKTIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAGESIG 82 (133)
Q Consensus 19 LrKnFR~~QK~IEkE~~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKRKL~~~~~ 82 (133)
|........+.++..+......+..+...+... +.. .....+.....+|+.++.+|.....
T Consensus 152 l~~~~~~l~~~~~~~l~~~~~~L~~l~~~l~~~--~~~-~p~~~l~~~~~~Ld~l~~rL~~~~~ 212 (319)
T PF02601_consen 152 LDELRQRLNRAMRNRLQRKRQRLNQLAKRLQLQ--SRR-LPERKLEQQQQRLDELKQRLKQAIQ 212 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444545555555555554443221 100 0234566666667666666666443
No 198
>PRK02793 phi X174 lysis protein; Provisional
Probab=21.79 E-value=2.5e+02 Score=18.50 Aligned_cols=11 Identities=18% Similarity=0.335 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q psy9793 36 YVQSAANELEK 46 (133)
Q Consensus 36 ~v~~~~~eL~k 46 (133)
.-...+.+|++
T Consensus 19 fQe~tIe~Ln~ 29 (72)
T PRK02793 19 FQEITIEELNV 29 (72)
T ss_pred HHHHHHHHHHH
Confidence 33333444433
No 199
>PF02520 DUF148: Domain of unknown function DUF148; InterPro: IPR003677 This entry represents the domain DUF148, which has no known function.
Probab=21.73 E-value=2.8e+02 Score=19.16 Aligned_cols=24 Identities=21% Similarity=0.387 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy9793 16 YEILNKKFRAVQKTIDREVSYVQS 39 (133)
Q Consensus 16 yElLrKnFR~~QK~IEkE~~~v~~ 39 (133)
|+.++......+..+.+.++.+.+
T Consensus 38 ~~~f~~~~~~~~~~~~~~~~~vi~ 61 (113)
T PF02520_consen 38 YNEFKAQVQAQKEEVRKNVTAVIS 61 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444443333
No 200
>PRK10884 SH3 domain-containing protein; Provisional
Probab=21.26 E-value=4.2e+02 Score=20.96 Aligned_cols=17 Identities=12% Similarity=0.393 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy9793 29 TIDREVSYVQSAANELE 45 (133)
Q Consensus 29 ~IEkE~~~v~~~~~eL~ 45 (133)
.+++|+..+...++++.
T Consensus 97 ~le~el~~l~~~l~~~~ 113 (206)
T PRK10884 97 DLENQVKTLTDKLNNID 113 (206)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445555544444443
No 201
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=21.21 E-value=3.5e+02 Score=20.03 Aligned_cols=13 Identities=23% Similarity=0.307 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHhh
Q psy9793 88 GHVCKRRIEHLKE 100 (133)
Q Consensus 88 ~~r~k~Rl~hL~e 100 (133)
++.+.+||+.|..
T Consensus 111 v~~L~~rId~L~~ 123 (132)
T PF05597_consen 111 VEALSARIDQLTA 123 (132)
T ss_pred HHHHHHHHHHHHH
Confidence 4455556665543
No 202
>KOG0977|consensus
Probab=21.19 E-value=4.7e+02 Score=24.09 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHH
Q psy9793 60 TRLLGGMFERLQALKRKAGESIGE 83 (133)
Q Consensus 60 ~~~Ld~lI~rl~~LKRKL~~~~~e 83 (133)
...++.|.+.+..+++--+.-+.+
T Consensus 203 ~n~~q~Lleel~f~~~~h~~eI~e 226 (546)
T KOG0977|consen 203 QNRVQTLLEELAFLKRIHKQEIEE 226 (546)
T ss_pred HhHHHHHHHHHHHHHhccHHHHHH
Confidence 334444444444444333333333
No 203
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=21.15 E-value=2.4e+02 Score=18.20 Aligned_cols=43 Identities=16% Similarity=0.339 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy9793 31 DREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAGESI 81 (133)
Q Consensus 31 EkE~~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKRKL~~~~ 81 (133)
|--++.....+.+|+..+. ..-..|+.+-..++.|..|+.+..
T Consensus 10 E~~la~qe~~ie~Ln~~v~--------~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 10 EIKLAFQEDTIEELNDVVT--------EQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344455555556555432 233555666666666666665544
No 204
>PF10266 Strumpellin: Hereditary spastic paraplegia protein strumpellin; InterPro: IPR019393 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. Strumpellin contains one known domain called a spectrin repeat that consists of three alpha-helices of a characteristic length wrapped in a left-handed coiled coil. The spectrin proteins have multiple copies of this repeat, which can then form multimers in the cell. Spectrin associates with the cell membrane via spectrin repeats in the ankyrin protein. The spectrin repeat is a structural platform for cytoskeletal protein assemblies. Two closely situated point mutations in human strumpellin lead to the condition of hereditary spastic paraplegia.
Probab=21.03 E-value=8.5e+02 Score=24.44 Aligned_cols=75 Identities=8% Similarity=0.044 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCC-C---CCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhcC
Q psy9793 29 TIDREVSYVQSAANELEKTIASS-E---KPPLTEVTRLLGGMFERLQALKRKAGESIGEELQVGHVCKRRIEHLKEHSGN 104 (133)
Q Consensus 29 ~IEkE~~~v~~~~~eL~k~l~~~-~---~~~~~~a~~~Ld~lI~rl~~LKRKL~~~~~eE~~~~~r~k~Rl~hL~el~~~ 104 (133)
..++-.....+.+.+|...++|+ . ...+....+++..|.++++.|.-.=. ..-.+.++++..|+++.++....
T Consensus 413 ~w~~~k~~~~~~m~eLa~~Fsg~~~L~~~~~n~~L~~Wf~~~~~~i~~Ld~~~~---~~agrkI~qliqaLeeV~efhql 489 (1081)
T PF10266_consen 413 RWEECKKEASERMQELAEFFSGTKPLTRIEKNENLQQWFREMSKQIESLDYEDS---TKAGRKIQQLIQALEEVQEFHQL 489 (1081)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcccccccchhHHHHHHHHHHHHHhcccccc---chHhHHHHHHHHHHHHHHHHhCc
Confidence 34455666777788888877764 1 22222677888888888877653322 22245678888899998887655
Q ss_pred CC
Q psy9793 105 VL 106 (133)
Q Consensus 105 ~~ 106 (133)
+.
T Consensus 490 ~~ 491 (1081)
T PF10266_consen 490 SS 491 (1081)
T ss_pred cc
Confidence 43
No 205
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=21.01 E-value=6.8e+02 Score=23.26 Aligned_cols=90 Identities=18% Similarity=0.233 Sum_probs=58.5
Q ss_pred ccccHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHH-------Hh
Q psy9793 12 LKVPYEILNKKFR------AVQKTIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRK-------AG 78 (133)
Q Consensus 12 lkVPyElLrKnFR------~~QK~IEkE~~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKRK-------L~ 78 (133)
++--.|.++.+|+ ..++.+++++..+.+.+.++.+.++.+...=. .+...|..+.+.|...+.+ |.
T Consensus 328 L~~Eie~V~~sY~l~e~e~~~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS-~lq~~l~~~~~~l~~i~~~q~~~~e~L~ 406 (570)
T COG4477 328 LKEEIERVKESYRLAETELGSVRKFEKELKELESVLDEILENIEAQEVAYS-ELQDNLEEIEKALTDIEDEQEKVQEHLT 406 (570)
T ss_pred HHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHH-HHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 4445667777776 46889999999999999999888765432222 4555555555555555444 44
Q ss_pred hHHHHHHH---HHHHHHHHHHHHhhhh
Q psy9793 79 ESIGEELQ---VGHVCKRRIEHLKEHS 102 (133)
Q Consensus 79 ~~~~eE~~---~~~r~k~Rl~hL~el~ 102 (133)
.+-+.|.+ .+.+.+.++.-++...
T Consensus 407 ~LrkdEl~Are~l~~~~~~l~eikR~m 433 (570)
T COG4477 407 SLRKDELEARENLERLKSKLHEIKRYM 433 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444433 3777888887777654
No 206
>PRK02224 chromosome segregation protein; Provisional
Probab=20.98 E-value=6.9e+02 Score=23.32 Aligned_cols=33 Identities=15% Similarity=0.239 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9793 16 YEILNKKFRAVQKTIDREVSYVQSAANELEKTI 48 (133)
Q Consensus 16 yElLrKnFR~~QK~IEkE~~~v~~~~~eL~k~l 48 (133)
||.+..+++.+.+.+++-...+...+.++...+
T Consensus 164 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 196 (880)
T PRK02224 164 LEEYRERASDARLGVERVLSDQRGSLDQLKAQI 196 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777766666666666655555555443
No 207
>PF06581 p31comet: Mad1 and Cdc20-bound-Mad2 binding; InterPro: IPR009511 This entry represents Mad1 and Cdc20-bound-Mad2 binding proteins that are involved in the cell-cycle surveillance mechanism called the spindle checkpoint []. This mechanism monitors the proper bipolar attachment of sister chromatids to spindle microtubules and ensures the fidelity of chromosome segregation during mitosis. A key player in mitosis is Mad2, which exhibits an unusual two-state behaviour. A Mad1-Mad2 core complex recruits cytosolic Mad2 to kinetochores through Mad2 dimerisation and converts Mad2 to a conformer amenable to Cdc20 binding. p31comet inactivates the checkpoint by binding to Mad1- or Cdc20-bound Mad2 in such a way as to stop Mad2 activation and to promote the dissociation of the Mad2-Cdc20 complex [].; GO: 0007096 regulation of exit from mitosis, 0005634 nucleus; PDB: 2QYF_B.
Probab=20.93 E-value=1.4e+02 Score=24.92 Aligned_cols=18 Identities=28% Similarity=0.551 Sum_probs=10.2
Q ss_pred ccCcccccHHHHHHHHHH
Q psy9793 8 EHPTLKVPYEILNKKFRA 25 (133)
Q Consensus 8 E~p~lkVPyElLrKnFR~ 25 (133)
..+.+-.|||.|..-+|.
T Consensus 74 QRqQiPlpYeQL~~f~~k 91 (264)
T PF06581_consen 74 QRQQIPLPYEQLAFFYRK 91 (264)
T ss_dssp HTTSSSS-HHHHT-----
T ss_pred hhhcCCChHHHHHHHHhc
Confidence 457789999999976654
No 208
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=20.89 E-value=1.5e+02 Score=15.77 Aligned_cols=18 Identities=22% Similarity=0.453 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHhhH
Q psy9793 63 LGGMFERLQALKRKAGES 80 (133)
Q Consensus 63 Ld~lI~rl~~LKRKL~~~ 80 (133)
++.+=.|+..|+++|.+.
T Consensus 3 ~~rlr~rI~dLer~L~~C 20 (23)
T PF04508_consen 3 MNRLRNRISDLERQLSEC 20 (23)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445556666777776654
No 209
>TIGR03652 FeS_repair_RIC iron-sulfur cluster repair di-iron protein. Members of this protein family, designated variously as YftE, NorA, DrnN, and NipC, are di-iron proteins involved in the repair of iron-sulfur clusters. Previously assigned names reflect pleiotropic effects of damage from NO or other oxidative stress when this protein is mutated. The suggested name now is RIC, for Repair of Iron Centers.
Probab=20.76 E-value=4.1e+02 Score=20.65 Aligned_cols=59 Identities=17% Similarity=0.225 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy9793 28 KTIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAGESIGEELQVG 88 (133)
Q Consensus 28 K~IEkE~~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKRKL~~~~~eE~~~~ 88 (133)
..+..|-..+...++++.+...+. ..++ .+......+...+..+..-|.+.+..|..++
T Consensus 154 ~~m~~EH~~~~~~l~~L~~l~~~~-~~p~-~ac~~~~~~~~~l~~~~~~L~~HI~~En~iL 212 (216)
T TIGR03652 154 SVMESEHDEAGDLLKELRELTNDY-TPPE-DACNTWRALYSGLEELEDDLHEHIHLENNIL 212 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCC-CCCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345566666666666666655432 2334 4666677777778888888888877776543
No 210
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=20.73 E-value=4.4e+02 Score=23.25 Aligned_cols=59 Identities=15% Similarity=0.236 Sum_probs=35.1
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhH
Q psy9793 12 LKVPYEILNKKFRAVQKTIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAGES 80 (133)
Q Consensus 12 lkVPyElLrKnFR~~QK~IEkE~~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKRKL~~~ 80 (133)
.+|+.++++.+.+.....|+ .....+.+++. + .... .....+..+.+.+..|+++++-+
T Consensus 161 ~~vQ~~L~~~Rl~~L~~qi~----~~~~~l~~~~~---~--~~~~-~~~~~~~~l~~~~~~l~~~~~~l 219 (475)
T PF10359_consen 161 RRVQIELIQERLDELEEQIE----KHEEKLGELEL---N--PDDP-ELKSDIEELERHISSLKERIEFL 219 (475)
T ss_pred chHHHHHHHHHHHHHHHHHH----HHHHhhhcccc---c--cccH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888888765544444 34444333332 1 1223 56677777777777777776543
No 211
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=20.70 E-value=4.5e+02 Score=21.06 Aligned_cols=33 Identities=12% Similarity=0.234 Sum_probs=23.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9793 15 PYEILNKKFRAVQKTIDREVSYVQSAANELEKT 47 (133)
Q Consensus 15 PyElLrKnFR~~QK~IEkE~~~v~~~~~eL~k~ 47 (133)
=++.+||.+......+..+...+.+.+....+.
T Consensus 102 ~~~~~rK~~~~~~~kl~~el~~~~~el~k~Kk~ 134 (237)
T cd07657 102 DKRKAKKAYQEERQQIDEQYKKLTDEVEKLKSE 134 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777777777777666665554
No 212
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=20.64 E-value=2.7e+02 Score=18.51 Aligned_cols=47 Identities=13% Similarity=0.277 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHhc--CCCCCChHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy9793 34 VSYVQSAANELEKTIA--SSEKPPLTEVTRLLGGMFERLQALKRKAGESI 81 (133)
Q Consensus 34 ~~~v~~~~~eL~k~l~--~~~~~~~~~a~~~Ld~lI~rl~~LKRKL~~~~ 81 (133)
+..+...+..|.+.++ |+..+.. +....|..++.+...+-+...+.+
T Consensus 5 l~~in~~v~~l~k~~~~lGt~~Ds~-~lR~~i~~~~~~~~~l~k~~~~~l 53 (102)
T PF14523_consen 5 LFKINQNVSQLEKLVNQLGTPRDSQ-ELREKIHQLIQKTNQLIKEISELL 53 (102)
T ss_dssp HHHHHHHHHHHHHHHHHH-SSS--H-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCccccH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555544321 1123333 566666666666655555554443
No 213
>KOG1962|consensus
Probab=20.59 E-value=4.2e+02 Score=21.44 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHH
Q psy9793 61 RLLGGMFERLQALKRKAGESIGE 83 (133)
Q Consensus 61 ~~Ld~lI~rl~~LKRKL~~~~~e 83 (133)
..|+...+++..|+++.+...+|
T Consensus 172 ~~Le~~~~~~~al~Kq~e~~~~E 194 (216)
T KOG1962|consen 172 KKLEKAQKKVDALKKQSEGLQDE 194 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHcccH
Confidence 34445555555555555555554
No 214
>PRK14127 cell division protein GpsB; Provisional
Probab=20.53 E-value=3.4e+02 Score=19.58 Aligned_cols=45 Identities=18% Similarity=0.271 Sum_probs=32.1
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhh
Q psy9793 53 KPPLTEVTRLLGGMFERLQALKRKAGESIGEELQVGHVCKRRIEHLKEHS 102 (133)
Q Consensus 53 ~~~~~~a~~~Ld~lI~rl~~LKRKL~~~~~eE~~~~~r~k~Rl~hL~el~ 102 (133)
-+.+ ++-..||.++.-++.|-+....+..+ +.+++.+|..++.-.
T Consensus 23 Yd~~-EVD~FLd~V~~dye~l~~e~~~Lk~e----~~~l~~~l~e~~~~~ 67 (109)
T PRK14127 23 YDQD-EVDKFLDDVIKDYEAFQKEIEELQQE----NARLKAQVDELTKQV 67 (109)
T ss_pred CCHH-HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhh
Confidence 5566 78888888888888887777666544 667777777776543
No 215
>KOG2307|consensus
Probab=20.36 E-value=7.4e+02 Score=23.43 Aligned_cols=57 Identities=12% Similarity=0.131 Sum_probs=36.1
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHH
Q psy9793 13 KVPYEILNKKFRAVQKTIDREVSYVQ-SAANELEKTIASSEKPPLTEVTRLLGGMFERLQ 71 (133)
Q Consensus 13 kVPyElLrKnFR~~QK~IEkE~~~v~-~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~ 71 (133)
+||+|.||-+.|..-|.+-+++-.+. ...++.-+. +.+=++-| +++..|..=+.+++
T Consensus 45 ~v~letLrddLrlylksl~~aMieLIN~DYADFVnL-StnLVgld-~aln~i~qpL~qlr 102 (705)
T KOG2307|consen 45 KVDLETLRDDLRLYLKSLQNAMIELINDDYADFVNL-STNLVGLD-DALNKIEQPLNQLR 102 (705)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhh-hhhhccHH-HHHHHHHhHHHHHH
Confidence 79999999999999999988776544 334444332 22224445 56665555444443
No 216
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=20.27 E-value=5.8e+02 Score=23.39 Aligned_cols=31 Identities=26% Similarity=0.172 Sum_probs=15.8
Q ss_pred HHHHHHhhHHHHHHHH-HHHHHHHHHHHhhhh
Q psy9793 72 ALKRKAGESIGEELQV-GHVCKRRIEHLKEHS 102 (133)
Q Consensus 72 ~LKRKL~~~~~eE~~~-~~r~k~Rl~hL~el~ 102 (133)
..+|||..+.+...+. +..++.-+.||++|+
T Consensus 414 ~Eerkm~rL~~~~iq~qleKlk~Kl~~~k~L~ 445 (531)
T COG5259 414 NEERKMERLRNVLIQAQLEKLKMKLGHLKELE 445 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555554332 555555555555543
No 217
>PRK04325 hypothetical protein; Provisional
Probab=20.10 E-value=2.8e+02 Score=18.38 Aligned_cols=40 Identities=5% Similarity=0.052 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh-hhcCCCCCCCCCCCCCCCCC
Q psy9793 79 ESIGEELQVGHVCKRRIEHLKE-HSGNVLSNTSPDEIPPHNTP 120 (133)
Q Consensus 79 ~~~~eE~~~~~r~k~Rl~hL~e-l~~~~~~~~~~~~~~~~~~~ 120 (133)
+.+-+....++++.+.+.+|.+ +.+...+. ....+|++.+
T Consensus 30 ~vv~~Qq~~I~~L~~ql~~L~~rl~~~~~~~--~~~~~~~~e~ 70 (74)
T PRK04325 30 ATVARQQQTLDLLQAQLRLLYQQMRDANPDA--AEPYSLRDEI 70 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--cCCCCCCcCC
Confidence 3344444555666666666643 22222211 2223567777
No 218
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=20.10 E-value=5.8e+02 Score=22.09 Aligned_cols=30 Identities=10% Similarity=0.174 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9793 16 YEILNKKFRAVQKTIDREVSYVQSAANELE 45 (133)
Q Consensus 16 yElLrKnFR~~QK~IEkE~~~v~~~~~eL~ 45 (133)
|+.+..++..++|.|......+....+.+.
T Consensus 264 ~~~~~~~~~~~~k~l~~~~~~~~~~~~~~~ 293 (412)
T PF04108_consen 264 LDEMENNEERTKKLLQSQRDHIRELYNALS 293 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555544444444433333
No 219
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=20.05 E-value=2e+02 Score=17.78 Aligned_cols=15 Identities=33% Similarity=0.523 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHH
Q psy9793 62 LLGGMFERLQALKRK 76 (133)
Q Consensus 62 ~Ld~lI~rl~~LKRK 76 (133)
+|+.|-+||+.|+.+
T Consensus 31 kL~~vs~RLe~LEn~ 45 (47)
T PF10393_consen 31 KLDAVSKRLEALENR 45 (47)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 345555555555443
Done!