Query psy9793
Match_columns 133
No_of_seqs 100 out of 165
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 19:53:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9793.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9793hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3swy_A Cyclic nucleotide-gated 87.7 3.1 0.00011 25.0 7.0 43 58-100 2-44 (46)
2 3swf_A CGMP-gated cation chann 84.1 3.8 0.00013 27.0 6.2 44 58-101 4-47 (74)
3 3efg_A Protein SLYX homolog; x 81.0 6.9 0.00024 25.6 6.6 59 59-117 12-77 (78)
4 1yke_B RNA polymerase II holoe 79.1 16 0.00056 26.6 10.3 78 22-100 54-131 (151)
5 1ykh_B RNA polymerase II holoe 76.0 18 0.00063 25.6 10.5 77 21-98 53-129 (132)
6 1deq_A Fibrinogen (alpha chain 75.2 11 0.00038 31.8 7.8 24 59-82 111-134 (390)
7 2spc_A Spectrin; cytoskeleton; 74.8 9.7 0.00033 24.8 6.1 37 63-99 52-88 (107)
8 4ioe_A Secreted protein ESXB; 72.2 15 0.00053 23.0 9.7 77 11-94 6-85 (93)
9 2jo8_A Serine/threonine-protei 70.5 8.1 0.00028 23.7 4.4 35 8-42 3-38 (51)
10 3gwk_C SAG1039, putative uncha 70.3 18 0.00062 23.1 10.4 40 11-50 5-47 (98)
11 3gpv_A Transcriptional regulat 68.8 10 0.00035 27.0 5.4 36 81-118 111-146 (148)
12 4gif_A Polycystic kidney disea 67.5 16 0.00056 21.7 5.2 33 36-76 11-43 (45)
13 3a7p_A Autophagy protein 16; c 62.8 39 0.0013 24.9 7.6 78 21-99 64-141 (152)
14 1nkp_B MAX protein, MYC proto- 61.7 29 0.00098 22.2 9.1 73 24-97 3-79 (83)
15 1m1j_A Fibrinogen alpha subuni 59.0 48 0.0016 28.7 8.5 18 64-81 114-131 (491)
16 4abx_A DNA repair protein RECN 58.5 49 0.0017 23.9 10.5 45 58-102 122-166 (175)
17 1s35_A Beta-I spectrin, spectr 57.4 49 0.0017 23.6 9.7 63 16-79 142-204 (214)
18 3ci9_A Heat shock factor-bindi 53.5 5.3 0.00018 24.1 1.3 18 58-75 28-45 (48)
19 3mq9_A Bone marrow stromal ant 52.8 74 0.0025 25.9 8.6 53 24-80 396-448 (471)
20 2xgw_A Peroxide resistance pro 52.2 71 0.0024 23.8 8.1 83 11-102 10-106 (199)
21 3fb2_A Spectrin alpha chain, b 51.7 43 0.0015 24.2 6.4 15 59-73 196-210 (218)
22 1m1j_C Fibrinogen gamma chain; 51.0 1.1E+02 0.0037 25.7 9.6 59 16-75 32-98 (409)
23 1nkp_A C-MYC, MYC proto-oncoge 50.2 51 0.0017 21.6 9.9 75 24-99 7-86 (88)
24 2zvf_A Alanyl-tRNA synthetase; 48.9 56 0.0019 23.0 6.5 43 37-83 12-54 (171)
25 2efk_A CDC42-interacting prote 48.7 84 0.0029 23.7 9.5 66 58-124 209-285 (301)
26 2de0_X Alpha-(1,6)-fucosyltran 48.7 1.3E+02 0.0044 25.8 11.5 77 13-99 47-137 (526)
27 1xou_B Z5138 gene product; coi 48.3 58 0.002 21.7 9.2 74 17-104 11-87 (95)
28 2lw1_A ABC transporter ATP-bin 48.2 54 0.0018 21.3 7.4 52 28-82 25-77 (89)
29 3fse_A Two-domain protein cont 47.6 46 0.0016 27.3 6.5 62 37-103 208-271 (365)
30 3uux_B Mitochondrial division 46.6 1.1E+02 0.0036 24.2 8.2 45 59-103 178-229 (242)
31 2j69_A Bacterial dynamin-like 45.6 1.2E+02 0.0042 26.5 9.3 13 66-78 674-686 (695)
32 3oja_A Leucine-rich immune mol 43.6 1.3E+02 0.0045 24.5 10.0 43 58-100 407-449 (487)
33 3twe_A Alpha4H; unknown functi 43.5 35 0.0012 17.8 3.5 21 58-78 5-25 (27)
34 3ghg_A Fibrinogen alpha chain; 43.2 1E+02 0.0036 27.1 8.2 15 16-30 73-87 (562)
35 3zbh_A ESXA; unknown function, 43.0 59 0.002 20.2 12.0 39 11-49 6-47 (99)
36 2kwh_A RAla-binding protein 1; 42.4 59 0.002 20.1 6.8 49 29-79 7-55 (56)
37 3p8c_F ABL interactor 2; actin 41.8 95 0.0032 22.9 6.8 44 58-101 54-97 (159)
38 1nlw_A MAD protein, MAX dimeri 41.6 69 0.0023 20.6 10.4 72 24-96 2-78 (80)
39 3ghg_A Fibrinogen alpha chain; 41.3 28 0.00096 30.6 4.4 17 65-81 114-130 (562)
40 2gsv_A Hypothetical protein YV 40.8 59 0.002 21.1 4.9 65 11-84 4-70 (80)
41 1u4q_A Spectrin alpha chain, b 39.2 1.2E+02 0.0041 22.7 9.7 58 17-75 251-308 (322)
42 3pdy_A Plectin; cytoskeleton, 38.1 1.1E+02 0.0039 22.1 9.4 72 14-100 138-209 (210)
43 3hrn_A Transient receptor pote 36.6 81 0.0028 20.0 8.4 46 37-90 11-56 (64)
44 1lrz_A FEMA, factor essential 36.3 1.4E+02 0.0046 24.2 7.7 52 26-79 248-299 (426)
45 3ljm_A Coil Ser L9C; de novo d 35.8 53 0.0018 17.6 3.9 20 61-80 8-27 (31)
46 1cun_A Protein (alpha spectrin 33.8 1.2E+02 0.0042 21.2 11.7 61 17-78 36-96 (213)
47 2akf_A Coronin-1A; coiled coil 33.1 62 0.0021 17.6 3.9 12 89-100 16-27 (32)
48 1wt6_A Myotonin-protein kinase 32.9 1.1E+02 0.0036 20.3 7.3 21 25-45 14-34 (81)
49 3rkg_A Magnesium transporter M 32.4 1.8E+02 0.0062 22.8 9.6 76 13-89 120-202 (261)
50 3i00_A HIP-I, huntingtin-inter 31.8 1.3E+02 0.0045 20.9 6.4 44 58-101 37-83 (120)
51 2aze_B Transcription factor E2 31.7 72 0.0025 21.7 4.5 31 69-99 7-40 (106)
52 4aj5_K Spindle and kinetochore 31.3 1.4E+02 0.0048 21.2 9.5 41 54-95 44-84 (123)
53 3lay_A Zinc resistance-associa 31.1 1.6E+02 0.0054 21.7 10.4 65 17-102 77-141 (175)
54 2c0g_A ERP29 homolog, windbeut 31.1 1.8E+02 0.006 22.2 7.2 15 34-48 197-211 (248)
55 1xaw_A Occludin; coiled-coil, 30.8 1.5E+02 0.0052 21.4 9.2 69 28-101 62-131 (140)
56 1cun_A Protein (alpha spectrin 30.7 1.4E+02 0.0048 20.9 9.1 58 17-75 142-199 (213)
57 2zqm_A Prefoldin beta subunit 30.1 1.2E+02 0.004 19.9 6.7 37 10-46 62-98 (117)
58 2qc7_A ERP31, ERP28, endoplasm 29.4 29 0.00099 26.5 2.3 11 91-101 210-220 (240)
59 1zww_A SH3-containing GRB2-lik 29.0 1.9E+02 0.0064 21.8 8.5 42 58-100 196-238 (256)
60 3vkg_A Dynein heavy chain, cyt 28.6 3E+02 0.01 29.2 10.0 44 58-101 2032-2078(3245)
61 1u5p_A Spectrin alpha chain, b 28.4 1.6E+02 0.0054 20.8 10.1 61 17-78 145-205 (216)
62 1b33_N Phycobilisome 7.8 KD li 28.3 26 0.00088 22.5 1.5 20 10-29 25-46 (67)
63 2pyb_A NAPA, neutrophil activa 28.1 1.5E+02 0.0051 20.5 6.7 35 70-104 36-70 (151)
64 1uix_A RHO-associated kinase; 27.7 51 0.0017 21.3 2.9 16 16-31 13-28 (71)
65 1ji5_A DLP-1; dodecamer, four- 27.0 92 0.0031 20.8 4.4 32 70-101 32-63 (142)
66 2bai_A Genome polyprotein; zin 27.0 15 0.0005 20.3 0.2 19 108-126 3-21 (32)
67 3azd_A Short alpha-tropomyosin 27.0 28 0.00096 19.5 1.4 12 70-81 6-17 (37)
68 1s1c_X RHO-associated, coiled- 26.5 62 0.0021 20.9 3.2 11 17-27 16-26 (71)
69 2w83_C C-JUN-amino-terminal ki 26.0 1.2E+02 0.004 19.9 4.5 38 58-99 34-71 (77)
70 3rfy_A Peptidyl-prolyl CIS-tra 25.7 19 0.00066 29.9 0.8 63 58-123 104-166 (369)
71 1vp7_A Exodeoxyribonuclease VI 25.7 80 0.0027 21.5 3.8 40 58-97 34-76 (100)
72 4gkw_A Spindle assembly abnorm 25.6 2E+02 0.0067 21.0 8.2 66 10-79 63-130 (167)
73 3iyk_A VP5; icosahedral virus; 25.2 3.4E+02 0.012 23.7 8.4 60 15-78 147-206 (526)
74 3uul_A Utrophin; spectrin repe 25.0 1.4E+02 0.0046 18.9 10.6 54 27-80 45-104 (118)
75 2vs0_A Virulence factor ESXA; 24.7 1.3E+02 0.0043 18.5 10.4 40 11-50 3-45 (97)
76 2c5k_T Syntaxin TLG1, T-snare 24.1 1.6E+02 0.0055 19.5 6.4 20 58-77 40-59 (95)
77 1s94_A S-syntaxin; three helix 23.8 2E+02 0.0068 20.4 7.2 29 72-100 78-106 (180)
78 2iak_A Bullous pemphigoid anti 23.5 1.9E+02 0.0066 20.9 6.0 60 17-77 156-215 (224)
79 1fxk_A Prefoldin; archaeal pro 23.2 1.5E+02 0.0053 19.0 5.0 35 11-45 58-92 (107)
80 3f4m_A Tumor necrosis factor, 22.8 1.3E+02 0.0045 22.2 4.8 69 29-99 7-75 (161)
81 1jig_A DLP-2; dodecamer, four- 22.6 1.2E+02 0.0042 20.3 4.4 32 70-101 36-67 (146)
82 2z90_A Starvation-inducible DN 22.5 1.2E+02 0.004 21.4 4.4 33 70-102 49-81 (161)
83 1gmj_A ATPase inhibitor; coile 22.3 1.8E+02 0.006 19.3 5.3 34 67-100 39-79 (84)
84 1tjo_A Iron-rich DPSA-homolog 22.2 1.2E+02 0.004 21.8 4.4 32 70-101 60-91 (182)
85 3uun_A Dystrophin; triple heli 22.2 1.5E+02 0.0053 18.6 9.9 20 59-78 83-102 (119)
86 2f95_B Sensory rhodopsin II tr 22.2 19 0.00064 24.2 0.0 17 107-123 147-163 (163)
87 2fjc_A Antigen TPF1; mini ferr 22.0 1.2E+02 0.0042 21.1 4.4 33 70-102 44-76 (156)
88 2qqy_A Sigma B operon; dodecam 21.9 1.3E+02 0.0045 19.8 4.4 30 70-99 41-70 (149)
89 3ogh_B Protein YCIE; iron-bind 21.8 2.2E+02 0.0074 20.9 5.9 42 58-99 23-67 (171)
90 1o9r_A Agrobacterium tumefacie 21.8 1.2E+02 0.0042 21.2 4.4 33 70-102 48-80 (162)
91 3gi7_A Secreted protein of unk 21.8 61 0.0021 21.9 2.6 26 87-112 96-121 (122)
92 2jqq_A Conserved oligomeric go 21.8 1.6E+02 0.0056 22.5 5.2 15 88-102 140-154 (204)
93 1u5p_A Spectrin alpha chain, b 21.7 2.1E+02 0.0073 20.0 12.1 54 27-81 45-102 (216)
94 2dfs_A Myosin-5A; myosin-V, in 21.7 4.3E+02 0.015 24.7 9.0 49 28-81 956-1004(1080)
95 2yjk_A AFP, DPS; metal-binding 21.6 1.3E+02 0.0043 21.2 4.4 33 70-102 51-83 (161)
96 1gax_A Valrs, valyl-tRNA synth 21.2 3.6E+02 0.012 24.5 8.2 30 22-51 797-826 (862)
97 1n1q_A DPS protein; four-helix 21.2 1.4E+02 0.0046 20.3 4.4 32 70-101 39-70 (149)
98 2bk6_A Non-heme iron-containin 21.0 1.3E+02 0.0045 20.9 4.4 33 70-102 39-71 (156)
99 2chp_A MRGA, metalloregulation 20.9 1.3E+02 0.0046 20.8 4.4 33 70-102 43-75 (153)
100 2c41_A DPS family DNA-binding 20.8 1.4E+02 0.0047 20.6 4.4 32 70-101 41-72 (158)
101 2dl1_A Spartin; SPG20, MIT, st 20.2 2.3E+02 0.0078 19.8 11.2 80 16-110 12-106 (116)
102 1fio_A SSO1 protein; four heli 20.2 2.4E+02 0.0081 20.0 8.2 64 26-101 10-75 (196)
103 2cf7_A DPR; peroxide resistanc 20.2 1.4E+02 0.0047 21.1 4.4 33 70-102 48-80 (165)
104 3ak8_A DNA protection during s 20.0 1.4E+02 0.0048 21.1 4.4 33 70-102 59-91 (167)
No 1
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=87.66 E-value=3.1 Score=24.98 Aligned_cols=43 Identities=14% Similarity=0.178 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Q psy9793 58 EVTRLLGGMFERLQALKRKAGESIGEELQVGHVCKRRIEHLKE 100 (133)
Q Consensus 58 ~a~~~Ld~lI~rl~~LKRKL~~~~~eE~~~~~r~k~Rl~hL~e 100 (133)
+.-++++.|-..|+.|+-|+..+..+-......++.||..|+.
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~lE~ 44 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQLES 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556788888889999999999999999999999999998864
No 2
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=84.11 E-value=3.8 Score=27.00 Aligned_cols=44 Identities=11% Similarity=0.173 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhh
Q psy9793 58 EVTRLLGGMFERLQALKRKAGESIGEELQVGHVCKRRIEHLKEH 101 (133)
Q Consensus 58 ~a~~~Ld~lI~rl~~LKRKL~~~~~eE~~~~~r~k~Rl~hL~el 101 (133)
++-.+++.|-..|+.|+-|+..+..+-.....+++.||..|...
T Consensus 4 dlEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~ 47 (74)
T 3swf_A 4 GLEEKVTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKF 47 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45577888888899999999999999999999999999998864
No 3
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=80.99 E-value=6.9 Score=25.62 Aligned_cols=59 Identities=24% Similarity=0.291 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHhhh-hcCCCC--CCCCCC-CCCC
Q psy9793 59 VTRLLGGMFERLQALKR---KAGESIGEELQVGHVCKRRIEHLKEH-SGNVLS--NTSPDE-IPPH 117 (133)
Q Consensus 59 a~~~Ld~lI~rl~~LKR---KL~~~~~eE~~~~~r~k~Rl~hL~el-~~~~~~--~~~~~~-~~~~ 117 (133)
.-..|..|-.|+--..+ .|++.+-+....+++++.++.+|.+- .+..++ ....+| .|||
T Consensus 12 le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~~~~~~~~~e~~PPH 77 (78)
T 3efg_A 12 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRSTLFADAADEPPPPH 77 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCccC
Confidence 33344444444433333 34444556667788888888888653 222222 122345 7888
No 4
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=79.06 E-value=16 Score=26.62 Aligned_cols=78 Identities=13% Similarity=0.183 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Q psy9793 22 KFRAVQKTIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAGESIGEELQVGHVCKRRIEHLKE 100 (133)
Q Consensus 22 nFR~~QK~IEkE~~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKRKL~~~~~eE~~~~~r~k~Rl~hL~e 100 (133)
.|...++.+=+.+..-.+.+..|..++-+-+.+.+ +..+.|..|-+.++...+.+.+.+.+-...+.+++.-|.-+.+
T Consensus 54 ~f~~~~~ela~dli~kakqIe~LIdsLPg~~~see-eQ~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~~l~~ia~ 131 (151)
T 1yke_B 54 EFSNTIDELSTDIILKTRQINKLIDSLPGVDVSAE-EQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSLIEDFVD 131 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTSSSCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777776666666666667777666655445666 8999999999999999999999999988999999888877655
No 5
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=75.95 E-value=18 Score=25.61 Aligned_cols=77 Identities=13% Similarity=0.192 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy9793 21 KKFRAVQKTIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAGESIGEELQVGHVCKRRIEHL 98 (133)
Q Consensus 21 KnFR~~QK~IEkE~~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKRKL~~~~~eE~~~~~r~k~Rl~hL 98 (133)
-.|...++.+=+.+..-.+.+..|..++-+-+.+.+ +..+.|..|-+.++...+.+.+.+.+=...+.+++.-|.-+
T Consensus 53 ~~f~~~~~ela~dli~k~kqIe~LIdsLP~~~~see-~Q~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~~i 129 (132)
T 1ykh_B 53 EEFSNTIDELSTDIILKTRQINKLIDSLPGVDVSAE-EQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSMIEDF 129 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777666666666667777666655445666 89999999999999999999999998888888888776544
No 6
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=75.24 E-value=11 Score=31.77 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHH
Q psy9793 59 VTRLLGGMFERLQALKRKAGESIG 82 (133)
Q Consensus 59 a~~~Ld~lI~rl~~LKRKL~~~~~ 82 (133)
.-+-.+.|-.++.-||+++...+.
T Consensus 111 ~~e~s~eLe~~i~~lk~~V~~q~~ 134 (390)
T 1deq_A 111 FKQINEDLRSRIEILRRKVIEQVQ 134 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhH
Confidence 444455666677777777766666
No 7
>2spc_A Spectrin; cytoskeleton; 1.80A {Drosophila melanogaster} SCOP: a.7.1.1
Probab=74.79 E-value=9.7 Score=24.75 Aligned_cols=37 Identities=14% Similarity=0.272 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q psy9793 63 LGGMFERLQALKRKAGESIGEELQVGHVCKRRIEHLK 99 (133)
Q Consensus 63 Ld~lI~rl~~LKRKL~~~~~eE~~~~~r~k~Rl~hL~ 99 (133)
+...-.++..+....++++....-....|..|++.+.
T Consensus 52 ~~~~~~~i~~l~~~a~~L~~~~h~~~~~I~~r~~~l~ 88 (107)
T 2spc_A 52 INGHEQKIAALQTVADQLIAQNHYASNLVDEKRKQVL 88 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 3333344444444444444444333444555544443
No 8
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=72.22 E-value=15 Score=23.04 Aligned_cols=77 Identities=12% Similarity=0.087 Sum_probs=39.8
Q ss_pred cccccHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy9793 11 TLKVPYEILNKK---FRAVQKTIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAGESIGEELQV 87 (133)
Q Consensus 11 ~lkVPyElLrKn---FR~~QK~IEkE~~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKRKL~~~~~eE~~~ 87 (133)
.++|.||.|+.. |+.....|+..+..+...+..|...- .+ .+...+......+..--+++.+..++=...
T Consensus 6 ~i~v~~e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~L~~~W------~G-~a~~af~~~~~~~~~~~~~~~~~L~~i~~~ 78 (93)
T 4ioe_A 6 EIKITPEELERIAGNFKNAAGEAQSQINRLEGDINSLEGQW------AG-ATQAKFRGEFIQSKQAMQQYIPILEGISTD 78 (93)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSS------CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------Cc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999998864 45555555556666655555543211 12 344444444444443334444444444444
Q ss_pred HHHHHHH
Q psy9793 88 GHVCKRR 94 (133)
Q Consensus 88 ~~r~k~R 94 (133)
+.++...
T Consensus 79 L~~~A~~ 85 (93)
T 4ioe_A 79 LKRIADK 85 (93)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
No 9
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=70.47 E-value=8.1 Score=23.67 Aligned_cols=35 Identities=20% Similarity=0.281 Sum_probs=28.8
Q ss_pred ccCccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9793 8 EHPTLK-VPYEILNKKFRAVQKTIDREVSYVQSAAN 42 (133)
Q Consensus 8 E~p~lk-VPyElLrKnFR~~QK~IEkE~~~v~~~~~ 42 (133)
++.+|+ ++||.|.+...+.+..+|+|+..+..-..
T Consensus 3 df~fLk~ls~eEL~~rl~~Ld~~Me~Ei~elr~RY~ 38 (51)
T 2jo8_A 3 DYEFLKSWTVEDLQKRLLALDPMMEQEIEEIRQKYQ 38 (51)
T ss_dssp CCGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHhCCHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 345666 89999999999999999999988876543
No 10
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=70.34 E-value=18 Score=23.05 Aligned_cols=40 Identities=13% Similarity=0.238 Sum_probs=31.4
Q ss_pred cccccHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy9793 11 TLKVPYEILNK---KFRAVQKTIDREVSYVQSAANELEKTIAS 50 (133)
Q Consensus 11 ~lkVPyElLrK---nFR~~QK~IEkE~~~v~~~~~eL~k~l~~ 50 (133)
.++|.||.|+. .|+.....|+..+..+...+..|...-.|
T Consensus 5 ~i~V~~e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~l~~~W~G 47 (98)
T 3gwk_C 5 QIKLTPEELRSSAQKYTAGSQQVTEVLNLLTQEQAVIDENWDG 47 (98)
T ss_dssp HBCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBCS
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCc
Confidence 47899999885 57777778888888888888888766554
No 11
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=68.77 E-value=10 Score=26.98 Aligned_cols=36 Identities=14% Similarity=0.159 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCCCCCC
Q psy9793 81 IGEELQVGHVCKRRIEHLKEHSGNVLSNTSPDEIPPHN 118 (133)
Q Consensus 81 ~~eE~~~~~r~k~Rl~hL~el~~~~~~~~~~~~~~~~~ 118 (133)
+.+=...++.+...|+++++.. ....+++++.|||.
T Consensus 111 i~~L~~~~~~L~~~i~~~~~~~--~~~~~~~~~~~~~~ 146 (148)
T 3gpv_A 111 IQDTEKNLKKIQQKIAKYEDEI--SSANATTKEGHHHH 146 (148)
T ss_dssp HHHHHHHHHHHHHHHHHC--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HcCCCCCCCCCCCC
Confidence 3333445667777777777664 55667788888774
No 12
>4gif_A Polycystic kidney disease 2-like 1 protein; coiled-coil, trimer, Trp channel, transient receptor potenti channel, polycystic kidney disease (PKD); 2.80A {Homo sapiens}
Probab=67.54 E-value=16 Score=21.73 Aligned_cols=33 Identities=21% Similarity=0.320 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHH
Q psy9793 36 YVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRK 76 (133)
Q Consensus 36 ~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKRK 76 (133)
.+..-+-.|+..++ .++.++|.+..||..++|+
T Consensus 11 ~L~rRVlqlE~~l~--------gI~S~idav~~Kl~~~Er~ 43 (45)
T 4gif_A 11 MLTRRVLQLETVLE--------GVVSQIDAVGSKLKMLERK 43 (45)
T ss_dssp HHHHHHHHHHHHHH--------HHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhc
Confidence 34444445555443 4778899999999988875
No 13
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=62.85 E-value=39 Score=24.94 Aligned_cols=78 Identities=14% Similarity=0.085 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q psy9793 21 KKFRAVQKTIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAGESIGEELQVGHVCKRRIEHLK 99 (133)
Q Consensus 21 KnFR~~QK~IEkE~~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKRKL~~~~~eE~~~~~r~k~Rl~hL~ 99 (133)
++-+.....+++|...+...+.++...+.......+ .+...+.++--.+..++.|+..+..|-..+++|--.|...=.
T Consensus 64 ~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e-~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk~qEA 141 (152)
T 3a7p_A 64 DALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTE-RLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKKTEKET 141 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667788888888888888888765432111123 566677777778889999999999998888888877765533
No 14
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=61.68 E-value=29 Score=22.21 Aligned_cols=73 Identities=8% Similarity=0.198 Sum_probs=35.8
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHhcC---CCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy9793 24 RAVQKTIDRE-VSYVQSAANELEKTIAS---SEKPPLTEVTRLLGGMFERLQALKRKAGESIGEELQVGHVCKRRIEH 97 (133)
Q Consensus 24 R~~QK~IEkE-~~~v~~~~~eL~k~l~~---~~~~~~~~a~~~Ld~lI~rl~~LKRKL~~~~~eE~~~~~r~k~Rl~h 97 (133)
|..+..+||. ...+...+.+|...+-. ...+.. +++..--..|..|+.-...|+.-.++=......++.+|..
T Consensus 3 R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~-~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 3 RAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRA-QILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777764 45688888888876532 234444 3333333333333333333332222222224444445443
No 15
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=59.01 E-value=48 Score=28.70 Aligned_cols=18 Identities=17% Similarity=0.370 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHhhHH
Q psy9793 64 GGMFERLQALKRKAGESI 81 (133)
Q Consensus 64 d~lI~rl~~LKRKL~~~~ 81 (133)
+.|-.+..-||+|+...+
T Consensus 114 ~eLe~ri~yIK~kVd~qi 131 (491)
T 1m1j_A 114 TELRRRIVTLKQRVATQV 131 (491)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445555555555555
No 16
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=58.49 E-value=49 Score=23.87 Aligned_cols=45 Identities=20% Similarity=0.324 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhh
Q psy9793 58 EVTRLLGGMFERLQALKRKAGESIGEELQVGHVCKRRIEHLKEHS 102 (133)
Q Consensus 58 ~a~~~Ld~lI~rl~~LKRKL~~~~~eE~~~~~r~k~Rl~hL~el~ 102 (133)
.-+..|..=+..+..|+||-...+++=..+.+.++.|++.|....
T Consensus 122 ~rL~~ie~RL~~l~~L~RKyg~~~eell~~~~~~~~eL~~l~~~~ 166 (175)
T 4abx_A 122 EALDRVEARLSALSKLKNKYGPTLEDVVEFGAQAAEELAGLEEDE 166 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCcH
Confidence 467788888888889999998777776778899999999887553
No 17
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=57.43 E-value=49 Score=23.55 Aligned_cols=63 Identities=17% Similarity=0.120 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q psy9793 16 YEILNKKFRAVQKTIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAGE 79 (133)
Q Consensus 16 yElLrKnFR~~QK~IEkE~~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKRKL~~ 79 (133)
.+.|-|.++..+..|+---..|........+.+.++....+ .+...++.|..+-+.|+.++.+
T Consensus 142 v~~llkkh~~f~~~l~~~~~~i~~l~~~a~~L~~~~h~~~~-~I~~~~~~l~~rw~~l~~~~~~ 204 (214)
T 1s35_A 142 AEAGIRKFEDFLGSMENNRDKVLSPVDSGNKLVAEGNLYSD-KIKEKVQLIEDRHRKNNEKAQE 204 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777765444444433333334444444444 5666666666666666555544
No 18
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=53.49 E-value=5.3 Score=24.11 Aligned_cols=18 Identities=17% Similarity=0.403 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy9793 58 EVTRLLGGMFERLQALKR 75 (133)
Q Consensus 58 ~a~~~Ld~lI~rl~~LKR 75 (133)
.++.++|.|-+|++.|++
T Consensus 28 ~I~~riDdM~~RIDdLE~ 45 (48)
T 3ci9_A 28 QIIGRIDDMSSRIDDLEK 45 (48)
T ss_dssp HHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHhHHHHHHh
Confidence 456666666666665554
No 19
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=52.76 E-value=74 Score=25.87 Aligned_cols=53 Identities=19% Similarity=0.236 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhH
Q psy9793 24 RAVQKTIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAGES 80 (133)
Q Consensus 24 R~~QK~IEkE~~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKRKL~~~ 80 (133)
++++..|.|.++.+++.+.++.+-.+.- .- .++...++|-+++..-.+|+++.
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~ 448 (471)
T 3mq9_A 396 RNVTHLLQQELTEAQKGFQDVEAQAATA---NH-TVMALMASLDAEKAQGQKKVEEL 448 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHhhhc---ch-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666665533210 11 34555555555544444444444
No 20
>2xgw_A Peroxide resistance protein; metal binding protein; 2.10A {Streptococcus pyogenes}
Probab=52.25 E-value=71 Score=23.82 Aligned_cols=83 Identities=11% Similarity=0.085 Sum_probs=44.4
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHhcCCCCCChHHHHHHHHHHHH---------HHHHHHHH
Q psy9793 11 TLKVPYEILNKKFRAVQKTIDREVSYVQ-----SAANELEKTIASSEKPPLTEVTRLLGGMFE---------RLQALKRK 76 (133)
Q Consensus 11 ~lkVPyElLrKnFR~~QK~IEkE~~~v~-----~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~---------rl~~LKRK 76 (133)
-=|=||-+++++-.++++.+...+..+. ..++.|++.+.+ .....+ ... .+..|..+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~LN~~LAd-------e~~l~~--k~~~~HWnV~G~~F~~LH~~ 80 (199)
T 2xgw_A 10 MGRDPNSMTNTLVENIYASVTHNISKKEASKNEKTKAVLNQAVAD-------LSVAAS--IVHQVHWYMRGPGFLYLHPK 80 (199)
T ss_dssp ----------CHHHHHHHHHHHC------CTTHHHHHHHHHHHHH-------HHHHHH--HHHHHHHHCCSTTHHHHHHH
T ss_pred hCCChHHHHHHHHHHHHHHHhcCcCCCCcccHHHHHHHHHHHHHH-------HHHHHH--HHHHHhhcCCCCCHHHHHHH
Confidence 3467888999888888888776555543 223333333321 010000 012 35677889
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhhhh
Q psy9793 77 AGESIGEELQVGHVCKRRIEHLKEHS 102 (133)
Q Consensus 77 L~~~~~eE~~~~~r~k~Rl~hL~el~ 102 (133)
+++..+++...++.+..||-.|....
T Consensus 81 ~ee~~~e~~~haD~lAERIl~LGG~P 106 (199)
T 2xgw_A 81 MDELLDSLNANLDEVSERLITIGGAP 106 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 99999999999999999999986544
No 21
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}
Probab=51.73 E-value=43 Score=24.23 Aligned_cols=15 Identities=13% Similarity=0.330 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q psy9793 59 VTRLLGGMFERLQAL 73 (133)
Q Consensus 59 a~~~Ld~lI~rl~~L 73 (133)
+...++.|-.+-+.|
T Consensus 196 I~~~~~~l~~rW~~l 210 (218)
T 3fb2_A 196 ISSRRNEVLDRWRRL 210 (218)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 22
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=51.01 E-value=1.1e+02 Score=25.65 Aligned_cols=59 Identities=8% Similarity=0.231 Sum_probs=31.7
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----C-C--CCChHHHHHHHHHHHHHHHHHHH
Q psy9793 16 YEI-LNKKFRAVQKTIDREVSYVQSAANELEKTIAS----S-E--KPPLTEVTRLLGGMFERLQALKR 75 (133)
Q Consensus 16 yEl-LrKnFR~~QK~IEkE~~~v~~~~~eL~k~l~~----~-~--~~~~~~a~~~Ld~lI~rl~~LKR 75 (133)
||. +.+.|+..-..+ +|+.++.+.+.++.+.+.. + . .+....+.....+|+.++..|+.
T Consensus 32 ~e~~V~~~l~~LE~~l-~elsn~ts~v~~Lvk~iq~~~~~~Q~~~~d~~e~~tq~skkml~~~~~~e~ 98 (409)
T 1m1j_C 32 YRLTTDGELLEIEGLL-QQATNSTGSIEYLIQHIKTIYPSEKQTLPQSIEQLTQKSKKIIEEIIRYEN 98 (409)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHSCSSTTCCSSCHHHHHHHHHHHHHHHHHTHH
T ss_pred HHhcchhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcccccCCCCCchhhHHHHHHHHHHHHHHHHH
Confidence 444 566666663333 3677777777766665421 0 1 11111455666667776666655
No 23
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=50.19 E-value=51 Score=21.58 Aligned_cols=75 Identities=15% Similarity=0.162 Sum_probs=47.6
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHhcC----CCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy9793 24 RAVQKTIDRE-VSYVQSAANELEKTIAS----SEKPPLTEVTRLLGGMFERLQALKRKAGESIGEELQVGHVCKRRIEHL 98 (133)
Q Consensus 24 R~~QK~IEkE-~~~v~~~~~eL~k~l~~----~~~~~~~~a~~~Ld~lI~rl~~LKRKL~~~~~eE~~~~~r~k~Rl~hL 98 (133)
|..+..+||. ...+...|..|...+-+ ...++. .++..--..|..|+.-..++....+.-......++.||.-|
T Consensus 7 R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~-~iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 7 RRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKV-VILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6778888874 46788889998887532 134444 45555555555555555555555555555567777887766
Q ss_pred h
Q psy9793 99 K 99 (133)
Q Consensus 99 ~ 99 (133)
+
T Consensus 86 ~ 86 (88)
T 1nkp_A 86 G 86 (88)
T ss_dssp C
T ss_pred h
Confidence 4
No 24
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=48.88 E-value=56 Score=23.03 Aligned_cols=43 Identities=9% Similarity=0.203 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy9793 37 VQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAGESIGE 83 (133)
Q Consensus 37 v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKRKL~~~~~e 83 (133)
....+.++...++. +++ ++...+..+.+.+..+++++++...+
T Consensus 12 ~~~~l~~~a~~Lk~---~~~-~l~~~v~~l~~e~k~l~ke~~~l~~~ 54 (171)
T 2zvf_A 12 MERLLREASSILRV---EPA-KLPKTVERFFEEWKDQRKEIERLKSV 54 (171)
T ss_dssp HHHHHHHHHHTTTC---CTT-SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC---ChH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555543 334 68899999999999999999888765
No 25
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=48.71 E-value=84 Score=23.68 Aligned_cols=66 Identities=20% Similarity=0.119 Sum_probs=38.7
Q ss_pred HHHHHHHHHH-HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh----------hhcCCCCCCCCCCCCCCCCCCCCC
Q psy9793 58 EVTRLLGGMF-ERLQALKRKAGESIGEELQVGHVCKRRIEHLKE----------HSGNVLSNTSPDEIPPHNTPFPPC 124 (133)
Q Consensus 58 ~a~~~Ld~lI-~rl~~LKRKL~~~~~eE~~~~~r~k~Rl~hL~e----------l~~~~~~~~~~~~~~~~~~~~~~~ 124 (133)
.++..+..|. .|+..|+.-|.....-+......+...++.|.. +..+...+.+..++|+ +.+|-||
T Consensus 209 ~~~~~lQ~lee~r~~~lk~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~id~~~D~~~fi~~~~~g~~~P~-~~~Fe~~ 285 (301)
T 2efk_A 209 QIFDKLQDMDERRATRLGAGYGLLSEAELEVVPIIAKCLEGMKVAANAVDPKNDSHVLIELHKSGFARPG-DVEFEDF 285 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHTGGGCCCCC-CCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHHHcCCCCCCCC-CCCcccC
Confidence 4556666665 677888888888877766665555555444443 2233444444555555 4467665
No 26
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=48.70 E-value=1.3e+02 Score=25.82 Aligned_cols=77 Identities=21% Similarity=0.238 Sum_probs=44.4
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHH----------
Q psy9793 13 KVPYEILNKKFRAVQKTIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAGESIG---------- 82 (133)
Q Consensus 13 kVPyElLrKnFR~~QK~IEkE~~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKRKL~~~~~---------- 82 (133)
.+-||.|||..-+.-+-+ ...|...+..+.+ .... ++.+.|+.++..+..+++.|...++
T Consensus 47 ~~~~e~~~~~~~~~~~e~---~~~~~~~~~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~g~~~ 116 (526)
T 2de0_X 47 GKDHEILRRRIENGAKEL---WFFLQSELKKLKN------LEGN-ELQRHADEFLLDLGHHERSIMTDLYYLSQTDGAGD 116 (526)
T ss_dssp CHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHT------CCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHH
T ss_pred ChHHHHHHHHHHHhHHHH---HHHHHHHHHHhhc------cCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhH
Confidence 356888888543333322 3444444444443 1233 6778888888888888887754433
Q ss_pred ---HHH-HHHHHHHHHHHHHh
Q psy9793 83 ---EEL-QVGHVCKRRIEHLK 99 (133)
Q Consensus 83 ---eE~-~~~~r~k~Rl~hL~ 99 (133)
.+. .+-++.+.||..++
T Consensus 117 ~r~~~~~~lt~~vq~~i~~~Q 137 (526)
T 2de0_X 117 WREKEAKDLTELVQRRITYLQ 137 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 122 33456666776654
No 27
>1xou_B Z5138 gene product; coiled coil, helix bundle, heterodimer, structural protein/chaperone complex; 2.80A {Escherichia coli} SCOP: a.231.1.2
Probab=48.27 E-value=58 Score=21.67 Aligned_cols=74 Identities=28% Similarity=0.417 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy9793 17 EILNKKFRAVQKTIDR---EVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAGESIGEELQVGHVCKR 93 (133)
Q Consensus 17 ElLrKnFR~~QK~IEk---E~~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKRKL~~~~~eE~~~~~r~k~ 93 (133)
|+|-|..|+--..|.+ |..-|...++.|..... .++ ++.+.|+.+|+-- ...+|..+++..-.
T Consensus 11 elldkkirseie~ikkiiaefdvvke~v~~l~ekak---t~p--qaae~ln~liegy---------t~geerklydsals 76 (95)
T 1xou_B 11 ELLDKKIRSEIEAIKKIIAEFDVVKESVNELSEKAK---TDP--QAAEKLNKLIEGY---------TYGEERKLYDSALS 76 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCH--HHHHHHHHHHHHH---------HHSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CCH--HHHHHHHHHHHhh---------cchhHHHHHHHHHH
Confidence 6677777765555444 66667777777755432 122 5788899988763 34566666666666
Q ss_pred HHHHHhhhhcC
Q psy9793 94 RIEHLKEHSGN 104 (133)
Q Consensus 94 Rl~hL~el~~~ 104 (133)
.|+.|=+-.++
T Consensus 77 kieklietm~p 87 (95)
T 1xou_B 77 KIEKLIETLSP 87 (95)
T ss_dssp HHHHHHHTC--
T ss_pred HHHHHHHhhCc
Confidence 66666554433
No 28
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=48.16 E-value=54 Score=21.27 Aligned_cols=52 Identities=6% Similarity=0.130 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCC-CChHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy9793 28 KTIDREVSYVQSAANELEKTIASSEK-PPLTEVTRLLGGMFERLQALKRKAGESIG 82 (133)
Q Consensus 28 K~IEkE~~~v~~~~~eL~k~l~~~~~-~~~~~a~~~Ld~lI~rl~~LKRKL~~~~~ 82 (133)
..|+.++..+...+++|...|+..++ +.+ ...+..+..++..++..|+....
T Consensus 25 e~le~~Ie~LE~~i~~le~~ladp~~y~~d---~~~~~~l~~~l~~~e~eLe~~~e 77 (89)
T 2lw1_A 25 EQLPQLLEDLEAKLEALQTQVADASFFSQP---HEQTQKVLADMAAAEQELEQAFE 77 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTGGGSC---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcccccCC---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888899999999888875432 122 24677777787777777766554
No 29
>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}
Probab=47.56 E-value=46 Score=27.28 Aligned_cols=62 Identities=13% Similarity=0.027 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHH--HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhc
Q psy9793 37 VQSAANELEKTIASSEKPPLTEVTRLLGGMFERL--QALKRKAGESIGEELQVGHVCKRRIEHLKEHSG 103 (133)
Q Consensus 37 v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl--~~LKRKL~~~~~eE~~~~~r~k~Rl~hL~el~~ 103 (133)
+...+..++..+.++ . -..+.++..++++ ..+|.-+++.+.++.+.++++..||+.|.+-.+
T Consensus 208 ~~~~v~~ln~a~~ge----~-~~~~a~e~~a~~~~d~~~~~~~~~i~~~~~~h~~~l~~~~~~~g~~~~ 271 (365)
T 3fse_A 208 KGDIVRGLNTALGGE----R-YSLEALEKYTEKESDVEAKALFQEMITNKQRHIEYLETYLTRLGEKPS 271 (365)
T ss_dssp HHHHHHHHHHHHHHH----H-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGG
T ss_pred hhhhhHHHHHHhhcC----h-hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcC
Confidence 344444554444331 2 4567778888887 688999999999999999999999999876544
No 30
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=46.56 E-value=1.1e+02 Score=24.21 Aligned_cols=45 Identities=20% Similarity=0.093 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhH----HHHHHHH---HHHHHHHHHHHhhhhc
Q psy9793 59 VTRLLGGMFERLQALKRKAGES----IGEELQV---GHVCKRRIEHLKEHSG 103 (133)
Q Consensus 59 a~~~Ld~lI~rl~~LKRKL~~~----~~eE~~~---~~r~k~Rl~hL~el~~ 103 (133)
=+..||.-|..|+..++++-+. -.+|..+ +..++.|++++++..-
T Consensus 178 EI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief~qEy~l 229 (242)
T 3uux_B 178 EIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDFLEEYGL 229 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhch
Confidence 3456677777777766655544 3444333 7889999999998653
No 31
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=45.61 E-value=1.2e+02 Score=26.48 Aligned_cols=13 Identities=15% Similarity=0.299 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHh
Q psy9793 66 MFERLQALKRKAG 78 (133)
Q Consensus 66 lI~rl~~LKRKL~ 78 (133)
+.++++.++.+++
T Consensus 674 ~~~~~~~~~~~~~ 686 (695)
T 2j69_A 674 VIAQLQKIEAAYS 686 (695)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 32
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=43.63 E-value=1.3e+02 Score=24.46 Aligned_cols=43 Identities=12% Similarity=0.179 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Q psy9793 58 EVTRLLGGMFERLQALKRKAGESIGEELQVGHVCKRRIEHLKE 100 (133)
Q Consensus 58 ~a~~~Ld~lI~rl~~LKRKL~~~~~eE~~~~~r~k~Rl~hL~e 100 (133)
.....++..+++.+.+..+++.-.+.-.+..+.++.+++++++
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (487)
T 3oja_A 407 SPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAE 449 (487)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHH
Confidence 4566678888888888777777766666667777777777776
No 33
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=43.52 E-value=35 Score=17.81 Aligned_cols=21 Identities=33% Similarity=0.488 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q psy9793 58 EVTRLLGGMFERLQALKRKAG 78 (133)
Q Consensus 58 ~a~~~Ld~lI~rl~~LKRKL~ 78 (133)
+.-+.|..+-+|++.|.+||.
T Consensus 5 elykeledlqerlrklrkklr 25 (27)
T 3twe_A 5 ELYKELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 566778888888888888874
No 34
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=43.24 E-value=1e+02 Score=27.07 Aligned_cols=15 Identities=7% Similarity=-0.090 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHH
Q psy9793 16 YEILNKKFRAVQKTI 30 (133)
Q Consensus 16 yElLrKnFR~~QK~I 30 (133)
||.+.++++.+.-.+
T Consensus 73 LEdlsKnsKdseqy~ 87 (562)
T 3ghg_A 73 LFEYQKNNKDSHSLT 87 (562)
T ss_dssp HTHHHHHHHHHHHHH
T ss_pred HHHHHhhchhHHHHH
Confidence 444444444444433
No 35
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=42.97 E-value=59 Score=20.25 Aligned_cols=39 Identities=8% Similarity=0.207 Sum_probs=27.1
Q ss_pred cccccHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy9793 11 TLKVPYEILNK---KFRAVQKTIDREVSYVQSAANELEKTIA 49 (133)
Q Consensus 11 ~lkVPyElLrK---nFR~~QK~IEkE~~~v~~~~~eL~k~l~ 49 (133)
.++|.||.|+. .|+.....|+..+..+...+..|...-.
T Consensus 6 ~i~v~~~~l~~~A~~~~~~~~~i~~~l~~L~~~v~~L~~~W~ 47 (99)
T 3zbh_A 6 VIRLTPEELRGVARQYNVESSNVTELIARLDQMSHTLQGIWE 47 (99)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred eeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 47899998875 5667777788888888888887765443
No 36
>2kwh_A RAla-binding protein 1; GTPase activation, transport protein; NMR {Homo sapiens} PDB: 2kwi_B*
Probab=42.44 E-value=59 Score=20.12 Aligned_cols=49 Identities=27% Similarity=0.214 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q psy9793 29 TIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAGE 79 (133)
Q Consensus 29 ~IEkE~~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKRKL~~ 79 (133)
.|..|+..=...++.|-+.++.|..+. ..-+.|=.+-.-+..|||||..
T Consensus 7 ~I~~El~kQe~lL~~LH~e~~ag~~~~--~~eE~lWeVQriiTqLKRKLk~ 55 (56)
T 2kwh_A 7 GIKEEIRRQEFLLNSLHRDLQGGIKDL--SKEERLWEVQRILTALKRKLRE 55 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSSCCCS--HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCc--hhHHHHHHHHHHHHHHHHHHcc
Confidence 455666666677778877787663333 3567777888888899999864
No 37
>3p8c_F ABL interactor 2; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=41.76 E-value=95 Score=22.93 Aligned_cols=44 Identities=11% Similarity=0.093 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhh
Q psy9793 58 EVTRLLGGMFERLQALKRKAGESIGEELQVGHVCKRRIEHLKEH 101 (133)
Q Consensus 58 ~a~~~Ld~lI~rl~~LKRKL~~~~~eE~~~~~r~k~Rl~hL~el 101 (133)
=+...|.++.-.+..+=.++....+.+...+.++..+|.||.+.
T Consensus 54 Ya~qsLaSVAyqIn~lA~~ll~lLd~Q~~~l~~mes~v~~l~Q~ 97 (159)
T 3p8c_F 54 YTTQSLASVAYLINTLANNVLQMLDIQASQLRRMESSINHISQT 97 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888899999999999999999999999999999999875
No 38
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=41.59 E-value=69 Score=20.61 Aligned_cols=72 Identities=17% Similarity=0.223 Sum_probs=43.4
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHhcC----CCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy9793 24 RAVQKTIDRE-VSYVQSAANELEKTIAS----SEKPPLTEVTRLLGGMFERLQALKRKAGESIGEELQVGHVCKRRIE 96 (133)
Q Consensus 24 R~~QK~IEkE-~~~v~~~~~eL~k~l~~----~~~~~~~~a~~~Ld~lI~rl~~LKRKL~~~~~eE~~~~~r~k~Rl~ 96 (133)
|..+..+||. -..+...|..|.+.+-. ...+.- .++..=-..|..|+.-.+++..-.+.-......+++||+
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~-~iL~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTL-SLLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5667778874 47788888999887532 133444 555555566666666666665554444444455555554
No 39
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=41.30 E-value=28 Score=30.64 Aligned_cols=17 Identities=35% Similarity=0.524 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHhhHH
Q psy9793 65 GMFERLQALKRKAGESI 81 (133)
Q Consensus 65 ~lI~rl~~LKRKL~~~~ 81 (133)
.|=.+++.||++++..+
T Consensus 114 ELRRrIqyLKekVdnQl 130 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKV 130 (562)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455555555555555
No 40
>2gsv_A Hypothetical protein YVFG; alpha-helical protein, structural genomics, PSI, protein structure initiative; 1.90A {Bacillus subtilis} SCOP: a.23.7.1 PDB: 2js1_A
Probab=40.83 E-value=59 Score=21.14 Aligned_cols=65 Identities=14% Similarity=0.219 Sum_probs=31.8
Q ss_pred cccccHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy9793 11 TLKVPYEILNKKFRAV--QKTIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAGESIGEE 84 (133)
Q Consensus 11 ~lkVPyElLrKnFR~~--QK~IEkE~~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKRKL~~~~~eE 84 (133)
+|.||| +--|||.- +-.-|--+.+++.-...+...+-.+.+.+. ..++.|++-|..--++...+|
T Consensus 4 LFsvpy--fi~N~k~hi~mn~~edKIhAmNaYYrsVvstlvqDqltKN-------AvvlkRiqHLdEAY~KVk~e~ 70 (80)
T 2gsv_A 4 LFSVPY--FIENLKQHIEMNQSEDKIHAMNSYYRSVVSTLVQDQLTKN-------AVVLKRIQHLDEAYNKVKRGE 70 (80)
T ss_dssp TTCHHH--HHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHCSSSCH-------HHHHHHHHHHHHHHHHHHHC-
T ss_pred hhhhHH--HHHHHHHHHHhCccHhHHHHHHHHHHHHHHHHHHHHHHhh-------HHHHHHHHHHHHHHHHHHhhh
Confidence 577777 55677765 333333344444444444333222223333 345666666665555555554
No 41
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Probab=39.17 E-value=1.2e+02 Score=22.75 Aligned_cols=58 Identities=17% Similarity=0.193 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHH
Q psy9793 17 EILNKKFRAVQKTIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKR 75 (133)
Q Consensus 17 ElLrKnFR~~QK~IEkE~~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKR 75 (133)
+.+-+.++..++.|+.--..|..........+..+..+.+ .+...++.+-++...|..
T Consensus 251 ~~ll~~h~~~~~el~~~~~~v~~l~~~~~~L~~~~~~~~~-~i~~~~~~l~~rw~~l~~ 308 (322)
T 1u4q_A 251 QGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVE-NITAKMKGLKGKVSDLEK 308 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHHHHHHHH
Confidence 5566777777776665444444433333333444333333 444455555555444433
No 42
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin repeat structural protein, crosslinking; 2.22A {Homo sapiens}
Probab=38.09 E-value=1.1e+02 Score=22.11 Aligned_cols=72 Identities=11% Similarity=0.174 Sum_probs=37.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy9793 14 VPYEILNKKFRAVQKTIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAGESIGEELQVGHVCKR 93 (133)
Q Consensus 14 VPyElLrKnFR~~QK~IEkE~~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKRKL~~~~~eE~~~~~r~k~ 93 (133)
.-.+.|.+.|...+..|+.--..|......-...+..+....+ .+.+.++.|-.+-+ .+.+.|..
T Consensus 138 ~~v~~l~~k~~~f~~el~~~~~~v~~l~~~~~~Ll~~~h~~~~-~I~~~~~~l~~~W~--------------~L~~L~~~ 202 (210)
T 3pdy_A 138 TNMTAKKESYSALMRELELKEKKIKELQNAGDRLLREDHPARP-TVESFQAALQTQWS--------------WMLQLCCC 202 (210)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHH-HHHHHHHHHHHHHH--------------HHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCChH-HHHHHHHHHHHHHH--------------HHHHHHHH
Confidence 3467888888887766665434444333333333444433334 34444444333332 34556666
Q ss_pred HHHHHhh
Q psy9793 94 RIEHLKE 100 (133)
Q Consensus 94 Rl~hL~e 100 (133)
|=.||++
T Consensus 203 ~e~hLk~ 209 (210)
T 3pdy_A 203 IEAHLKE 209 (210)
T ss_dssp HHHHCC-
T ss_pred HHHHhcc
Confidence 7777764
No 43
>3hrn_A Transient receptor potential (Trp) channel subfamily P member 2 (TRPP2); coiled coil, helix bundle, trimer, calcium, disease mutation, glycoprotein; 1.90A {Homo sapiens} PDB: 3hro_A
Probab=36.59 E-value=81 Score=20.00 Aligned_cols=46 Identities=9% Similarity=0.119 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy9793 37 VQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAGESIGEELQVGHV 90 (133)
Q Consensus 37 v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKRKL~~~~~eE~~~~~r 90 (133)
+..-+-+|+..++ .++..+|.+..||..++|+-...-+.=..+++.
T Consensus 11 L~rRVlqLE~sl~--------gI~SqIDaV~~KL~~~Er~k~~~re~m~kll~~ 56 (64)
T 3hrn_A 11 LVRRVDRMEHSIG--------SIVSKIDAVIVKLEIMERAKLKRREVLGRLLDG 56 (64)
T ss_dssp HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcc
Confidence 4444445555443 477889999999999988655444333344443
No 44
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=36.26 E-value=1.4e+02 Score=24.24 Aligned_cols=52 Identities=17% Similarity=0.163 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q psy9793 26 VQKTIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAGE 79 (133)
Q Consensus 26 ~QK~IEkE~~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKRKL~~ 79 (133)
....++.+...+.+.++++...+..+ .+.+ ....++..+-+++..+++++.+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-k~~~~~~~~~~~~~~~~~~~~~ 299 (426)
T 1lrz_A 248 YIKELNEERDILNKDLNKALKDIEKR-PENK-KAHNKRDNLQQQLDANEQKIEE 299 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-TTCH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhC-cccH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555556555554432 3333 3445555555555555555443
No 45
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=35.84 E-value=53 Score=17.63 Aligned_cols=20 Identities=25% Similarity=0.302 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHhhH
Q psy9793 61 RLLGGMFERLQALKRKAGES 80 (133)
Q Consensus 61 ~~Ld~lI~rl~~LKRKL~~~ 80 (133)
++-..+-++++.|++||+..
T Consensus 8 kkcaalesklqalekkleal 27 (31)
T 3ljm_A 8 KKCAALESKLQALEKKLEAL 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34556677888888888754
No 46
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A
Probab=33.83 E-value=1.2e+02 Score=21.23 Aligned_cols=61 Identities=18% Similarity=0.208 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHh
Q psy9793 17 EILNKKFRAVQKTIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAG 78 (133)
Q Consensus 17 ElLrKnFR~~QK~IEkE~~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKRKL~ 78 (133)
+.+.+.++..++-|+.-...|......-...+..+..+.+ .+...++.|-.+-+.|+....
T Consensus 36 ~~ll~kh~~~~~ei~~~~~~v~~v~~~g~~L~~~~~~~~~-~i~~~~~~l~~~w~~L~~~~~ 96 (213)
T 1cun_A 36 QNLRKKHKRLEAELAAHEPAIQSVLDTGKKLSDDNTIGKE-EIQQRLAQFVDHWKELKQLAA 96 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 4455666665555554433343333333333444434444 566677776666666655444
No 47
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=33.11 E-value=62 Score=17.62 Aligned_cols=12 Identities=25% Similarity=0.542 Sum_probs=5.9
Q ss_pred HHHHHHHHHHhh
Q psy9793 89 HVCKRRIEHLKE 100 (133)
Q Consensus 89 ~r~k~Rl~hL~e 100 (133)
+.+..|++.|++
T Consensus 16 q~lq~r~drle~ 27 (32)
T 2akf_A 16 QKLQERLDRLEE 27 (32)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344455555543
No 48
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=32.95 E-value=1.1e+02 Score=20.29 Aligned_cols=21 Identities=33% Similarity=0.450 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy9793 25 AVQKTIDREVSYVQSAANELE 45 (133)
Q Consensus 25 ~~QK~IEkE~~~v~~~~~eL~ 45 (133)
..|-.++.|+..=+....+|.
T Consensus 14 eLQSALeaEIqAKQ~i~EELs 34 (81)
T 1wt6_A 14 ELQEALEEEVLTRQSLSREME 34 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 556666666665555444553
No 49
>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae}
Probab=32.45 E-value=1.8e+02 Score=22.76 Aligned_cols=76 Identities=12% Similarity=0.173 Sum_probs=43.3
Q ss_pred cccHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChH-----HHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy9793 13 KVPYEI--LNKKFRAVQKTIDREVSYVQSAANELEKTIASSEKPPLT-----EVTRLLGGMFERLQALKRKAGESIGEEL 85 (133)
Q Consensus 13 kVPyEl--LrKnFR~~QK~IEkE~~~v~~~~~eL~k~l~~~~~~~~~-----~a~~~Ld~lI~rl~~LKRKL~~~~~eE~ 85 (133)
..|||. |=-.+-++=..++.|+..+...+..+-..+.+ +.+.++ ...+.|.++.+|++.++.-+++.-+.+.
T Consensus 120 ~lPFEfraLEa~L~~v~~~Le~e~~~l~~~~~~~L~~L~~-~i~~~~L~~Ll~~~k~L~~~~~kv~~vr~~leelLddDe 198 (261)
T 3rkg_A 120 SQFYEHRALESIFINVMSALETDFKLHSQICIQILNDLEN-EVNRLKLRHLLIKSKDLTLFYQKTLLIRDLLDELLENDD 198 (261)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCHH
Confidence 578884 44555566667777777776665544433433 244331 1113566666666667776777666555
Q ss_pred HHHH
Q psy9793 86 QVGH 89 (133)
Q Consensus 86 ~~~~ 89 (133)
....
T Consensus 199 Dm~~ 202 (261)
T 3rkg_A 199 DLAN 202 (261)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 50
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=31.78 E-value=1.3e+02 Score=20.95 Aligned_cols=44 Identities=11% Similarity=0.149 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHH---HHHHHHHHHHHHHHHhhh
Q psy9793 58 EVTRLLGGMFERLQALKRKAGESIGE---ELQVGHVCKRRIEHLKEH 101 (133)
Q Consensus 58 ~a~~~Ld~lI~rl~~LKRKL~~~~~e---E~~~~~r~k~Rl~hL~el 101 (133)
++...+..|-.++..|+.-|.+.... -..-...++.-++.+...
T Consensus 37 E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~~ 83 (120)
T 3i00_A 37 ESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRRQ 83 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777777766665422 111134555555555444
No 51
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=31.72 E-value=72 Score=21.72 Aligned_cols=31 Identities=23% Similarity=0.404 Sum_probs=13.7
Q ss_pred HHHHHHHHHhhHHHHHHHH---HHHHHHHHHHHh
Q psy9793 69 RLQALKRKAGESIGEELQV---GHVCKRRIEHLK 99 (133)
Q Consensus 69 rl~~LKRKL~~~~~eE~~~---~~r~k~Rl~hL~ 99 (133)
++..||+.++.+..+|..+ +..|...|.++.
T Consensus 7 ~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lt 40 (106)
T 2aze_B 7 RLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLS 40 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444555555555444333 333334444443
No 52
>4aj5_K Spindle and kinetochore-associated protein 2; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=31.30 E-value=1.4e+02 Score=21.18 Aligned_cols=41 Identities=15% Similarity=0.094 Sum_probs=35.1
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy9793 54 PPLTEVTRLLGGMFERLQALKRKAGESIGEELQVGHVCKRRI 95 (133)
Q Consensus 54 ~~~~~a~~~Ld~lI~rl~~LKRKL~~~~~eE~~~~~r~k~Rl 95 (133)
.+- ..++.|..+-+|...|+-.+..+..+..+..++|++=|
T Consensus 44 NPv-~Ll~~LsaIk~ry~~L~~q~~~iaaeQke~~d~ir~tL 84 (123)
T 4aj5_K 44 NPV-TLLKELSVIKSRYQTLYARFKPVAVEQKESKSRICATV 84 (123)
T ss_dssp TTH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445 78999999999999999999999998888888876644
No 53
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=31.08 E-value=1.6e+02 Score=21.72 Aligned_cols=65 Identities=9% Similarity=0.200 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy9793 17 EILNKKFRAVQKTIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAGESIGEELQVGHVCKRRIE 96 (133)
Q Consensus 17 ElLrKnFR~~QK~IEkE~~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKRKL~~~~~eE~~~~~r~k~Rl~ 96 (133)
..|+..||.-.+.+-.++.... .++...+.+++++. +.++++++.+..|+.++.. .|++
T Consensus 77 ~~I~~e~r~~~~~Lr~ql~akr---~EL~aL~~a~~~De-----akI~aL~~Ei~~Lr~qL~~-------------~R~k 135 (175)
T 3lay_A 77 QKIYDDYYTQTSALRQQLISKR---YEYNALLTASSPDT-----AKINAVAKEMESLGQKLDE-------------QRVK 135 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHTSSSCCH-----HHHHHHHHHHHHHHHHHHH-------------HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhCCCCCH-----HHHHHHHHHHHHHHHHHHH-------------HHHH
Confidence 3455555555555544444444 35555555433333 3566777777776666543 4666
Q ss_pred HHhhhh
Q psy9793 97 HLKEHS 102 (133)
Q Consensus 97 hL~el~ 102 (133)
+..++.
T Consensus 136 ~~~em~ 141 (175)
T 3lay_A 136 RDVAMA 141 (175)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666664
No 54
>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A
Probab=31.07 E-value=1.8e+02 Score=22.21 Aligned_cols=15 Identities=7% Similarity=0.235 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHh
Q psy9793 34 VSYVQSAANELEKTI 48 (133)
Q Consensus 34 ~~~v~~~~~eL~k~l 48 (133)
...+.+.++-|.+.+
T Consensus 197 ~~~~~~E~~Rl~~~l 211 (248)
T 2c0g_A 197 YDFLEEETKRLLRLK 211 (248)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 333444444443333
No 55
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=30.80 E-value=1.5e+02 Score=21.37 Aligned_cols=69 Identities=14% Similarity=0.233 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHhhh
Q psy9793 28 KTIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKR-KAGESIGEELQVGHVCKRRIEHLKEH 101 (133)
Q Consensus 28 K~IEkE~~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKR-KL~~~~~eE~~~~~r~k~Rl~hL~el 101 (133)
|.+-.++..|+.-|.+|...|..-..+.. +.. .++..-..||. |-.-...++..-..-++.-|.|++.+
T Consensus 62 k~Lhaev~~v~~~F~~Ld~~L~~l~~~s~-e~~----~i~~EY~r~k~~K~dp~y~ekK~Rc~yL~~KLsHIK~l 131 (140)
T 1xaw_A 62 KSLQSVLDEINKELSRLDKELDDYREESE-EYM----AAADEYNRLKQVKGSADYKSKKNHCKQLKSKLSHIKKM 131 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCTTSH-HHH----HHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCH-HHH----HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556888888888888877654222222 221 23444555553 44555666666666777778887765
No 56
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A
Probab=30.69 E-value=1.4e+02 Score=20.92 Aligned_cols=58 Identities=17% Similarity=0.193 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHH
Q psy9793 17 EILNKKFRAVQKTIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKR 75 (133)
Q Consensus 17 ElLrKnFR~~QK~IEkE~~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKR 75 (133)
+.|-+.+...+..|+.--..|..........+..+....+ .+...++.|-.+-+.|+.
T Consensus 142 ~~ll~~h~~~~~el~~~~~~i~~l~~~~~~L~~~~~~~~~-~I~~~~~~l~~~w~~l~~ 199 (213)
T 1cun_A 142 QGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVE-NITAKMKGLKGKVSDLEK 199 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChH-HHHHHHHHHHHHHHHHHH
Confidence 4455555555555544333333322222222333223333 344444444444444433
No 57
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=30.14 E-value=1.2e+02 Score=19.88 Aligned_cols=37 Identities=8% Similarity=0.169 Sum_probs=21.3
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9793 10 PTLKVPYEILNKKFRAVQKTIDREVSYVQSAANELEK 46 (133)
Q Consensus 10 p~lkVPyElLrKnFR~~QK~IEkE~~~v~~~~~eL~k 46 (133)
-|++.|.+.+..........|+.++..+...+..+.+
T Consensus 62 vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~ 98 (117)
T 2zqm_A 62 LIVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNE 98 (117)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666666665555555554444433
No 58
>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A
Probab=29.39 E-value=29 Score=26.52 Aligned_cols=11 Identities=9% Similarity=0.244 Sum_probs=5.2
Q ss_pred HHHHHHHHhhh
Q psy9793 91 CKRRIEHLKEH 101 (133)
Q Consensus 91 ~k~Rl~hL~el 101 (133)
+..|++=|+.+
T Consensus 210 ~~~r~NIL~~F 220 (240)
T 2qc7_A 210 LQKSLNILTAF 220 (240)
T ss_dssp HHHHHHHHTTS
T ss_pred HHHHHHHHHHH
Confidence 44455555443
No 59
>1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A {Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A 2c08_A
Probab=28.99 E-value=1.9e+02 Score=21.84 Aligned_cols=42 Identities=5% Similarity=0.112 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Q psy9793 58 EVTRLLGGMFER-LQALKRKAGESIGEELQVGHVCKRRIEHLKE 100 (133)
Q Consensus 58 ~a~~~Ld~lI~r-l~~LKRKL~~~~~eE~~~~~r~k~Rl~hL~e 100 (133)
++...+..++.. .+-+ +-|...+..+..+...|-..+.-|..
T Consensus 196 ~~~~~m~~l~~~e~e~~-~~L~~~v~aQl~y~~~~~e~L~~l~~ 238 (256)
T 1zww_A 196 IAESSMFNLLEMDIEQV-SQLSALVQAQLEYHKQAVQILQQVTV 238 (256)
T ss_dssp HHHHHHHHHHHTTHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555554 4444 67777777888888888777776653
No 60
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=28.63 E-value=3e+02 Score=29.24 Aligned_cols=44 Identities=14% Similarity=0.157 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHH---HHHHHHHHHHHHhhh
Q psy9793 58 EVTRLLGGMFERLQALKRKAGESIGEELQ---VGHVCKRRIEHLKEH 101 (133)
Q Consensus 58 ~a~~~Ld~lI~rl~~LKRKL~~~~~eE~~---~~~r~k~Rl~hL~el 101 (133)
.+.+.|..+-++|..|+.+.++...+=.. .++.|..|++.-..|
T Consensus 2032 ~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~L 2078 (3245)
T 3vkg_A 2032 EIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIAL 2078 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666777776666544332 266677777655443
No 61
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1
Probab=28.44 E-value=1.6e+02 Score=20.80 Aligned_cols=61 Identities=16% Similarity=0.199 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHh
Q psy9793 17 EILNKKFRAVQKTIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAG 78 (133)
Q Consensus 17 ElLrKnFR~~QK~IEkE~~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKRKL~ 78 (133)
+.|.+.++..+..|+.--..|......-...+..+..+.+ .+...++.|-.+-+.|+..+.
T Consensus 145 ~~ll~kh~~~~~el~~~~~~i~~l~~~g~~L~~~~~~~~~-~i~~~~~~l~~~W~~L~~~~~ 205 (216)
T 1u5p_A 145 QNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKE-EIQQRLAQFVDHWKELKQLAA 205 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCSH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 4455666655555554333333332222333344434445 555555555555555544433
No 62
>1b33_N Phycobilisome 7.8 KD linker polypeptide; light-harvesting protein, cyanobacteria, allophycocyanin, linker polypeptides; HET: BLA CYC; 2.30A {Mastigocladus laminosus} SCOP: d.30.1.1
Probab=28.30 E-value=26 Score=22.53 Aligned_cols=20 Identities=30% Similarity=0.410 Sum_probs=16.1
Q ss_pred Ccc--cccHHHHHHHHHHHHHH
Q psy9793 10 PTL--KVPYEILNKKFRAVQKT 29 (133)
Q Consensus 10 p~l--kVPyElLrKnFR~~QK~ 29 (133)
.+| .|||+.++..++..+|.
T Consensus 25 ~~~t~~VPy~rms~emQrI~r~ 46 (67)
T 1b33_N 25 TYFTKLVPYENWFREQQRIQKM 46 (67)
T ss_dssp HEEEEEEEHHHHHHHHHHHHHT
T ss_pred EEEEEEecHHHHhHHHHHHHHc
Confidence 456 69999999998887763
No 63
>2pyb_A NAPA, neutrophil activating protein; ferritin, DPS, four-helix bundle, metal transport; 2.60A {Borrelia burgdorferi}
Probab=28.10 E-value=1.5e+02 Score=20.46 Aligned_cols=35 Identities=11% Similarity=0.024 Sum_probs=30.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhcC
Q psy9793 70 LQALKRKAGESIGEELQVGHVCKRRIEHLKEHSGN 104 (133)
Q Consensus 70 l~~LKRKL~~~~~eE~~~~~r~k~Rl~hL~el~~~ 104 (133)
+..|..++++..+++....+.+..||-.|......
T Consensus 36 f~~lh~~~ee~~~e~~~~aD~lAERI~~Lgg~P~~ 70 (151)
T 2pyb_A 36 FFVIHKKTQKLYEYIEKIIDIVAERSRMLGYDSEF 70 (151)
T ss_dssp THHHHHHHHHHHTTTHHHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Confidence 66788999999999999999999999999766543
No 64
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=27.70 E-value=51 Score=21.30 Aligned_cols=16 Identities=31% Similarity=0.472 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHH
Q psy9793 16 YEILNKKFRAVQKTID 31 (133)
Q Consensus 16 yElLrKnFR~~QK~IE 31 (133)
+|.|++..+..|.-+.
T Consensus 13 ~eel~~klk~~~ee~~ 28 (71)
T 1uix_A 13 KEELNNKLKEAQEQLS 28 (71)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555554444333
No 65
>1ji5_A DLP-1; dodecamer, four-helix bundle, metal transport; 2.50A {Bacillus anthracis} SCOP: a.25.1.1
Probab=27.00 E-value=92 Score=20.81 Aligned_cols=32 Identities=19% Similarity=0.053 Sum_probs=28.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhh
Q psy9793 70 LQALKRKAGESIGEELQVGHVCKRRIEHLKEH 101 (133)
Q Consensus 70 l~~LKRKL~~~~~eE~~~~~r~k~Rl~hL~el 101 (133)
+.+|..++.+..++|...++.+..||..|-..
T Consensus 32 f~~l~~~~~~~~~ee~~had~laeri~~lGg~ 63 (142)
T 1ji5_A 32 FFTLHEKFEELYTESATHIDEIAERILAIGGK 63 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 78899999999999999999999999987543
No 66
>2bai_A Genome polyprotein; zinc finger domain, viruses, cardiovirus, structural genomics, PSI, protein structure initiative; NMR {Mengo virus} SCOP: g.87.1.1
Probab=27.00 E-value=15 Score=20.29 Aligned_cols=19 Identities=37% Similarity=0.665 Sum_probs=14.9
Q ss_pred CCCCCCCCCCCCCCCCCCc
Q psy9793 108 NTSPDEIPPHNTPFPPCPA 126 (133)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~ 126 (133)
.+--.|+=.|..||--||.
T Consensus 3 ~~~~~~aCkHgyp~~~CP~ 21 (32)
T 2bai_A 3 TTMEQEICAHSMTFEECPK 21 (32)
T ss_dssp SCCCSCCCSSSSCGGGHHH
T ss_pred hhHHHHHHhcCCCcccccc
Confidence 3455688899999988884
No 67
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=26.98 E-value=28 Score=19.52 Aligned_cols=12 Identities=33% Similarity=0.415 Sum_probs=5.8
Q ss_pred HHHHHHHHhhHH
Q psy9793 70 LQALKRKAGESI 81 (133)
Q Consensus 70 l~~LKRKL~~~~ 81 (133)
++++|+|++...
T Consensus 6 i~avKkKiq~lq 17 (37)
T 3azd_A 6 LEAVRRKIRSLQ 17 (37)
T ss_dssp CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444555554444
No 68
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=26.52 E-value=62 Score=20.87 Aligned_cols=11 Identities=27% Similarity=0.471 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q psy9793 17 EILNKKFRAVQ 27 (133)
Q Consensus 17 ElLrKnFR~~Q 27 (133)
|.|++..+..|
T Consensus 16 eel~~klk~~~ 26 (71)
T 1s1c_X 16 EELTEKMKKAE 26 (71)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33344333333
No 69
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=26.04 E-value=1.2e+02 Score=19.92 Aligned_cols=38 Identities=5% Similarity=0.004 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q psy9793 58 EVTRLLGGMFERLQALKRKAGESIGEELQVGHVCKRRIEHLK 99 (133)
Q Consensus 58 ~a~~~Ld~lI~rl~~LKRKL~~~~~eE~~~~~r~k~Rl~hL~ 99 (133)
+.++.+|.|...-..|+-.+..... ...+++.|+.-|.
T Consensus 34 DLI~rvdELt~E~e~l~~El~s~~~----~~~r~~~ri~elE 71 (77)
T 2w83_C 34 DLIAKVDELTCEKDVLQGELEAVKQ----AKLKLEEKNRELE 71 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHC----
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 5666666666665555544444332 2445555554443
No 70
>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana}
Probab=25.74 E-value=19 Score=29.91 Aligned_cols=63 Identities=11% Similarity=0.186 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCCCCCCCCCCC
Q psy9793 58 EVTRLLGGMFERLQALKRKAGESIGEELQVGHVCKRRIEHLKEHSGNVLSNTSPDEIPPHNTPFPP 123 (133)
Q Consensus 58 ~a~~~Ld~lI~rl~~LKRKL~~~~~eE~~~~~r~k~Rl~hL~el~~~~~~~~~~~~~~~~~~~~~~ 123 (133)
.+.+.++.|-.-|+.|++..+.-- .| .....-+.=|+.+-+++..-- ...|-+||..-...|.
T Consensus 104 ~~~~~~~~l~~~l~~l~~~~~~~d-~~-~~~~~~~~~l~~v~~le~~~~-~~fp~~vP~~y~~~P~ 166 (369)
T 3rfy_A 104 HGNEMIEKLEAGMQDMLKIVEDRK-RD-AVAPKQKEILKYVGGIEEDMV-DGFPYEVPEEYRNMPL 166 (369)
T ss_dssp HHHHHHHHHHHHHHHHHCCCSSCC-CS-SSGGGHHHHHHHHHHHHHHSS-CSSCSSCCSSCTTSCE
T ss_pred HHHHHHHHHHHHHHHHHHHHhccC-HH-HHHHHHHHHHHHHHHHHHhhc-cCCCccCchhcccCcc
Confidence 566677777777777766444321 11 111222222333334433222 2377788887666553
No 71
>1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1, joint center for structural genomics, PSI, protein structure initiative; 2.40A {Bordetella pertussis tohama I} SCOP: a.7.13.1
Probab=25.73 E-value=80 Score=21.55 Aligned_cols=40 Identities=13% Similarity=0.277 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHHHHHHH
Q psy9793 58 EVTRLLGGMFERLQALKRKAGESI---GEELQVGHVCKRRIEH 97 (133)
Q Consensus 58 ~a~~~Ld~lI~rl~~LKRKL~~~~---~eE~~~~~r~k~Rl~h 97 (133)
++++.|..++.+|+.=.--|+++. .+-..+++.|+.+|+-
T Consensus 34 eal~eLEeIV~~LE~gel~LEesl~lyeeG~~L~k~C~~~L~~ 76 (100)
T 1vp7_A 34 TALAELESLVSAMENGTLPLEQSLSAYRRGVELARVCQDRLAQ 76 (100)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777777764222233222 2334455555555544
No 72
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=25.56 E-value=2e+02 Score=21.00 Aligned_cols=66 Identities=9% Similarity=0.205 Sum_probs=41.6
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q psy9793 10 PTLKVPYEILNKKFRAVQKTIDREVSYVQSAANELEKT--IASSEKPPLTEVTRLLGGMFERLQALKRKAGE 79 (133)
Q Consensus 10 p~lkVPyElLrKnFR~~QK~IEkE~~~v~~~~~eL~k~--l~~~~~~~~~~a~~~Ld~lI~rl~~LKRKL~~ 79 (133)
..||.-.+.+.|||-.+++.+-|...+-+...-++.+. +.. +-. +.-.+++++...+-.|++.|+.
T Consensus 63 ~~Lrae~~~~QRn~~K~~~~Lkrn~~qQnQQSlDiRKLrELEA---DLK-EKDsMVe~LT~TiG~LrKELEd 130 (167)
T 4gkw_A 63 GKLRAELGTAQRNLEKADQLLKRNSQQQNQQSLDMRKLGELEA---DLK-EKDSMVESLTETIGILRKELEN 130 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH---THH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHhhhHHHhHhhhhHHHHHHHHh---HHh-hhhHHHHHHHHHHHHHHHHHHH
Confidence 35677788899999999999998776665554455443 111 111 3445556666666666666654
No 73
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=25.24 E-value=3.4e+02 Score=23.65 Aligned_cols=60 Identities=23% Similarity=0.311 Sum_probs=45.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHh
Q psy9793 15 PYEILNKKFRAVQKTIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAG 78 (133)
Q Consensus 15 PyElLrKnFR~~QK~IEkE~~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKRKL~ 78 (133)
-||.|.|..+...+.++.|...+......|.+.... -.. +=.+++..+-.+++.|+.-++
T Consensus 147 q~~~LekAl~s~~~i~~~e~~~l~~L~~AL~kE~~~---Rt~-dE~~mi~~yr~k~~aL~~aIe 206 (526)
T 3iyk_A 147 QFDILNKAVTSYNKILTEEDLQMRRLATALQKEIGE---RTH-AETVMVKEYRDKIDALKNAIE 206 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh---hcH-HHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999999999988877777664321 112 456788888888888876554
No 74
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=24.96 E-value=1.4e+02 Score=18.93 Aligned_cols=54 Identities=19% Similarity=0.164 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HhcCCCCCCh-H-HHHHHHHHHHHHHHHHHHHHhhH
Q psy9793 27 QKTIDREVSYVQSAANELEK----TIASSEKPPL-T-EVTRLLGGMFERLQALKRKAGES 80 (133)
Q Consensus 27 QK~IEkE~~~v~~~~~eL~k----~l~~~~~~~~-~-~a~~~Ld~lI~rl~~LKRKL~~~ 80 (133)
++.++.|+..-...+..+.. .+..+..+++ . .+...++.|-.|-+.|..++.+.
T Consensus 45 h~~l~~ei~~~~~~v~~v~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~R 104 (118)
T 3uul_A 45 HETFMMELSAHQSSVGSVLQAGNQLMTQGTLSDEEEFEIQEQMTLLNARWEALRVESMER 104 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555554443 2333323332 0 23445555555555555544443
No 75
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=24.69 E-value=1.3e+02 Score=18.50 Aligned_cols=40 Identities=15% Similarity=0.188 Sum_probs=29.3
Q ss_pred cccccHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy9793 11 TLKVPYEILNK---KFRAVQKTIDREVSYVQSAANELEKTIAS 50 (133)
Q Consensus 11 ~lkVPyElLrK---nFR~~QK~IEkE~~~v~~~~~eL~k~l~~ 50 (133)
.++|.||.|+. .|+.....|+..+..+...+..|...-.|
T Consensus 3 ~i~v~~~~l~~~A~~~~~~~~~l~~~l~~L~~~~~~L~~~W~G 45 (97)
T 2vs0_A 3 MIKMSPEEIRAKSQSYGQGSDQIRQILSDLTRAQGEIAANWEG 45 (97)
T ss_dssp CBCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCc
Confidence 46788888764 56777777888888888888887765444
No 76
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=24.15 E-value=1.6e+02 Score=19.47 Aligned_cols=20 Identities=25% Similarity=0.381 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy9793 58 EVTRLLGGMFERLQALKRKA 77 (133)
Q Consensus 58 ~a~~~Ld~lI~rl~~LKRKL 77 (133)
+....++.|-.-|+-|.+-+
T Consensus 40 El~~~l~el~e~l~DL~~SI 59 (95)
T 2c5k_T 40 EIQDILKDVEETIVDLDRSI 59 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333
No 77
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=23.83 E-value=2e+02 Score=20.43 Aligned_cols=29 Identities=7% Similarity=0.197 Sum_probs=14.9
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Q psy9793 72 ALKRKAGESIGEELQVGHVCKRRIEHLKE 100 (133)
Q Consensus 72 ~LKRKL~~~~~eE~~~~~r~k~Rl~hL~e 100 (133)
.++++|+....+=......|+.+|+-|+.
T Consensus 78 ~~k~~le~l~~~i~~~a~~ik~~Lk~l~~ 106 (180)
T 1s94_A 78 QMKEELEELMTDIKRTANKVRGKLKTIEL 106 (180)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555545555555555555554
No 78
>2iak_A Bullous pemphigoid antigen 1, isoform 5; triple helical bundle, spectrin repeat, cell adhesion; 3.00A {Mus musculus}
Probab=23.47 E-value=1.9e+02 Score=20.89 Aligned_cols=60 Identities=5% Similarity=0.083 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q psy9793 17 EILNKKFRAVQKTIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKA 77 (133)
Q Consensus 17 ElLrKnFR~~QK~IEkE~~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKRKL 77 (133)
+.|.+.|...+..|+.--..|......-.+.+..+....+ .+...++.|-.+-+.|+..+
T Consensus 156 ~~L~~kh~~l~~el~~~~~~v~~v~~~g~~L~~~~h~~~~-~I~~~~~~l~~~W~~L~~l~ 215 (224)
T 2iak_A 156 ARKKSYHAELMRELEQKEESIKAVQEIAEQLLLENHPARL-TIEAYRAAMQTQWSWILQLC 215 (224)
T ss_dssp ------CSSHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCcHH-HHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555554333333322222222333333334 44455555555555544433
No 79
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=23.23 E-value=1.5e+02 Score=18.97 Aligned_cols=35 Identities=9% Similarity=0.195 Sum_probs=19.5
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9793 11 TLKVPYEILNKKFRAVQKTIDREVSYVQSAANELE 45 (133)
Q Consensus 11 ~lkVPyElLrKnFR~~QK~IEkE~~~v~~~~~eL~ 45 (133)
|++.|.+.+..+.......|+.++..+.+.+..+.
T Consensus 58 fv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~ 92 (107)
T 1fxk_A 58 LIRVAKDELTEELQEKLETLQLREKTIERQEERVM 92 (107)
T ss_dssp EEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666555555555555444444433
No 80
>3f4m_A Tumor necrosis factor, alpha-induced protein 8- like protein 2; TIPE2, immune homeostasis, tnfaip8, immune system; 1.70A {Homo sapiens}
Probab=22.83 E-value=1.3e+02 Score=22.16 Aligned_cols=69 Identities=19% Similarity=0.158 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q psy9793 29 TIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAGESIGEELQVGHVCKRRIEHLK 99 (133)
Q Consensus 29 ~IEkE~~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKRKL~~~~~eE~~~~~r~k~Rl~hL~ 99 (133)
.|+-+++.+.+.+-.+.+...++....+ .+++.|=.++-|+-.|-| =++...||...++..+.++.++.
T Consensus 7 fIDdtsselLD~lyrl~K~~t~nkkeA~-kv~KniIKi~vKigvl~r-n~qf~~eEl~~~~~fr~k~~~~a 75 (161)
T 3f4m_A 7 FIDETSSEVLDELYRVSKEYTHSRPQAQ-RVIKDLIKVAIKVAVLHR-NGSFGPSELALATRFRQKLRQGA 75 (161)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHSCHHHHH-HHHHHHHHHHHHHHHHHH-TTCCCHHHHHHHHHHHHHHHHHH
T ss_pred hcCccHHHHHHHHHHHHHHHhcCHHHHH-HHHHHHHHHHHHhheeee-cCCCCHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777776554322222 344444444445444433 45666788888888888888876
No 81
>1jig_A DLP-2; dodecamer, four-helix bundle, metal transport; 1.46A {Bacillus anthracis} SCOP: a.25.1.1
Probab=22.56 E-value=1.2e+02 Score=20.34 Aligned_cols=32 Identities=22% Similarity=0.068 Sum_probs=28.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhh
Q psy9793 70 LQALKRKAGESIGEELQVGHVCKRRIEHLKEH 101 (133)
Q Consensus 70 l~~LKRKL~~~~~eE~~~~~r~k~Rl~hL~el 101 (133)
+.++..++.+..++|...++.+..||-.|-..
T Consensus 36 f~~lh~~~~~~~~ee~~had~laeri~~lGg~ 67 (146)
T 1jig_A 36 FFTLHEKFEEFYNEAGTYIDELAERILALEGK 67 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 78899999999999999999999999887543
No 82
>2z90_A Starvation-inducible DNA-binding protein or FINE tangled PILI major subunit; quarternary assembly, ferroxidation; 2.40A {Mycobacterium smegmatis str}
Probab=22.52 E-value=1.2e+02 Score=21.41 Aligned_cols=33 Identities=12% Similarity=0.127 Sum_probs=29.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhh
Q psy9793 70 LQALKRKAGESIGEELQVGHVCKRRIEHLKEHS 102 (133)
Q Consensus 70 l~~LKRKL~~~~~eE~~~~~r~k~Rl~hL~el~ 102 (133)
+..|..++++..+++....+.+..||-.|....
T Consensus 49 f~~lh~~~ee~~~e~~~~aD~lAERIl~LGg~P 81 (161)
T 2z90_A 49 FRDLHLQLDELVDFAREGSDTIAERMRALDAVP 81 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 677889999999999999999999999986543
No 83
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=22.29 E-value=1.8e+02 Score=19.29 Aligned_cols=34 Identities=29% Similarity=0.333 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHhhHHHHHH-------HHHHHHHHHHHHHhh
Q psy9793 67 FERLQALKRKAGESIGEEL-------QVGHVCKRRIEHLKE 100 (133)
Q Consensus 67 I~rl~~LKRKL~~~~~eE~-------~~~~r~k~Rl~hL~e 100 (133)
-.+|..||.+|.+-++... ..+.+.+.||..|+.
T Consensus 39 kEqL~~LKkkl~~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 39 KEQLAALKKHKENEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3445555655533332222 235667777777765
No 84
>1tjo_A Iron-rich DPSA-homolog protein; ferritin, low-iron, metal binding protein; 1.60A {Halobacterium salinarum} SCOP: a.25.1.1 PDB: 1moj_A 1tk6_A 1tko_A 1tkp_A
Probab=22.23 E-value=1.2e+02 Score=21.80 Aligned_cols=32 Identities=19% Similarity=0.203 Sum_probs=29.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhh
Q psy9793 70 LQALKRKAGESIGEELQVGHVCKRRIEHLKEH 101 (133)
Q Consensus 70 l~~LKRKL~~~~~eE~~~~~r~k~Rl~hL~el 101 (133)
+.+|..++++..+++....+.+..||-.|...
T Consensus 60 f~~lh~~~ee~~~e~~~haD~laERI~~LGg~ 91 (182)
T 1tjo_A 60 FRDLHLFLGEAAETAEEVADELAERVQALGGV 91 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 67899999999999999999999999988544
No 85
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=22.21 E-value=1.5e+02 Score=18.57 Aligned_cols=20 Identities=15% Similarity=0.152 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy9793 59 VTRLLGGMFERLQALKRKAG 78 (133)
Q Consensus 59 a~~~Ld~lI~rl~~LKRKL~ 78 (133)
+...++.|-.+-+.|..++.
T Consensus 83 i~~~l~~l~~rw~~L~~~~~ 102 (119)
T 3uun_A 83 VQEQMNLLNSRWECLRVASM 102 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 86
>2f95_B Sensory rhodopsin II transducer; membrane protein complex, signal transduction, photocycle ST membrane protein; HET: BOG RET; 2.20A {Natronomonas pharaonis} SCOP: f.17.4.1
Probab=22.19 E-value=19 Score=24.21 Aligned_cols=17 Identities=6% Similarity=0.007 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCC
Q psy9793 107 SNTSPDEIPPHNTPFPP 123 (133)
Q Consensus 107 ~~~~~~~~~~~~~~~~~ 123 (133)
..+..+.+-||-.|+||
T Consensus 147 ~ea~~~~~~~~~~~~~~ 163 (163)
T 2f95_B 147 KRAEEINTNSHHHHHHH 163 (163)
T ss_dssp -----------------
T ss_pred HHHHhcccCCCccccCC
Confidence 34455566677777776
No 87
>2fjc_A Antigen TPF1; mini ferritin, iron binding protein, metal transport; 2.50A {Treponema pallidum} SCOP: a.25.1.1
Probab=21.99 E-value=1.2e+02 Score=21.08 Aligned_cols=33 Identities=9% Similarity=0.040 Sum_probs=29.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhh
Q psy9793 70 LQALKRKAGESIGEELQVGHVCKRRIEHLKEHS 102 (133)
Q Consensus 70 l~~LKRKL~~~~~eE~~~~~r~k~Rl~hL~el~ 102 (133)
+..|..++++..+++....+.+..||-.|....
T Consensus 44 f~~lh~~~ee~~~e~~~~aD~lAERI~~LGg~P 76 (156)
T 2fjc_A 44 FKQVHELLEEYYVSVTEAFDTIAERLLQLGAQA 76 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 677889999999999999999999999986543
No 88
>2qqy_A Sigma B operon; dodecameric alpha-helical, ferritin fold, structural genomic protein structure initiative; 2.00A {Bacillus anthracis str}
Probab=21.87 E-value=1.3e+02 Score=19.75 Aligned_cols=30 Identities=23% Similarity=0.152 Sum_probs=26.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q psy9793 70 LQALKRKAGESIGEELQVGHVCKRRIEHLK 99 (133)
Q Consensus 70 l~~LKRKL~~~~~eE~~~~~r~k~Rl~hL~ 99 (133)
+.++...+.+...+|...++.+..||..+.
T Consensus 41 ~~~l~~~f~~~a~ee~~Ha~~l~e~i~~lg 70 (149)
T 2qqy_A 41 RQVLKPFFESEISDEQGHALYLAEKIKTLG 70 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 567899999999999999999999998763
No 89
>3ogh_B Protein YCIE; iron-binding, MCSG, four-helix-bundle, structural genomics, protein structure initiative; HET: MSE; 1.65A {Escherichia coli O6}
Probab=21.84 E-value=2.2e+02 Score=20.86 Aligned_cols=42 Identities=12% Similarity=0.181 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHH---HHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q psy9793 58 EVTRLLGGMFERL---QALKRKAGESIGEELQVGHVCKRRIEHLK 99 (133)
Q Consensus 58 ~a~~~Ld~lI~rl---~~LKRKL~~~~~eE~~~~~r~k~Rl~hL~ 99 (133)
++++.|..|++++ ..||..++....+-...+.|+..-++.+-
T Consensus 23 Q~~~aL~~ma~~~a~~peLk~a~e~Hl~eT~~qi~rLe~vf~~lg 67 (171)
T 3ogh_B 23 QAESMLESMASRIDNYPELRARIEQHLSETKNQIVQLETILDRND 67 (171)
T ss_dssp HHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 7888899999885 78999999999998888888887777653
No 90
>1o9r_A Agrobacterium tumefaciens DPS; iron-binding protein, DNA protection from oxidative damage, DNA-binding, iron- binding protein; 1.45A {Agrobacterium tumefaciens} SCOP: a.25.1.1 PDB: 3ge4_A*
Probab=21.80 E-value=1.2e+02 Score=21.16 Aligned_cols=33 Identities=12% Similarity=0.055 Sum_probs=29.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhh
Q psy9793 70 LQALKRKAGESIGEELQVGHVCKRRIEHLKEHS 102 (133)
Q Consensus 70 l~~LKRKL~~~~~eE~~~~~r~k~Rl~hL~el~ 102 (133)
+..|..++++..+++....+.+..||-.|....
T Consensus 48 f~~lh~~~ee~~~e~~~~aD~lAERI~~LGg~P 80 (162)
T 1o9r_A 48 FIAVHELLDTFRTQLDNHGDTIAERVVQLGGTA 80 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 677899999999999999999999999986543
No 91
>3gi7_A Secreted protein of unknown function DUF1311; structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2; 1.85A {Pseudomonas putida}
Probab=21.78 E-value=61 Score=21.94 Aligned_cols=26 Identities=15% Similarity=0.312 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCCCC
Q psy9793 87 VGHVCKRRIEHLKEHSGNVLSNTSPD 112 (133)
Q Consensus 87 ~~~r~k~Rl~hL~el~~~~~~~~~~~ 112 (133)
..+..+.|+..|+.+-....++.+||
T Consensus 96 ~~~lT~~R~~eL~~~l~~~~~~~~~~ 121 (122)
T 3gi7_A 96 IAQRSDERAEYLRSLGSQNSDEPAPE 121 (122)
T ss_dssp HHHHHHHHHHHHHHHHTCC-------
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 35677899999999988777777765
No 92
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=21.76 E-value=1.6e+02 Score=22.54 Aligned_cols=15 Identities=13% Similarity=0.182 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHhhhh
Q psy9793 88 GHVCKRRIEHLKEHS 102 (133)
Q Consensus 88 ~~r~k~Rl~hL~el~ 102 (133)
+.+|..++++|++++
T Consensus 140 ~~~~~~ll~~l~dl~ 154 (204)
T 2jqq_A 140 ITASRRILESCADSN 154 (204)
T ss_dssp HHHHHHHHHHHCSCC
T ss_pred HHHHHHHHHHHHhcC
Confidence 445555555555544
No 93
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1
Probab=21.69 E-value=2.1e+02 Score=20.04 Aligned_cols=54 Identities=17% Similarity=0.187 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy9793 27 QKTIDREVSYVQSAANELEK----TIASSEKPPLTEVTRLLGGMFERLQALKRKAGESI 81 (133)
Q Consensus 27 QK~IEkE~~~v~~~~~eL~k----~l~~~~~~~~~~a~~~Ld~lI~rl~~LKRKL~~~~ 81 (133)
|+.+++++......+..+.. .+..+..+.+ .+...++.|-.+-+.|.....+..
T Consensus 45 h~~le~~i~~~~~~v~~l~~~~~~L~~~~~~~~~-~i~~~~~~l~~~w~~L~~~~~~R~ 102 (216)
T 1u5p_A 45 HQLLEADISAHEDRLKDLNSQADSLMTSSAFDTS-QVKDKRETINGRFQRIKSMAAARR 102 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCTH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555554444444433 2333334455 677778888888777777655443
No 94
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=21.67 E-value=4.3e+02 Score=24.66 Aligned_cols=49 Identities=14% Similarity=0.163 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy9793 28 KTIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERLQALKRKAGESI 81 (133)
Q Consensus 28 K~IEkE~~~v~~~~~eL~k~l~~~~~~~~~~a~~~Ld~lI~rl~~LKRKL~~~~ 81 (133)
...+.|+..+...+.++++.... .. .+...+..+-+.+..+++.+++..
T Consensus 956 ~~~~~e~~~L~~~l~~le~~~~e----~~-~~~~~v~~L~~e~~~l~~~~~~~~ 1004 (1080)
T 2dfs_A 956 ITYSTETEKLRSDVERLRMSEEE----AK-NATNRVLSLQEEIAKLRKELHQTQ 1004 (1080)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHH----HH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666665555555443211 11 233444444444544444444433
No 95
>2yjk_A AFP, DPS; metal-binding protein, iron uptake, ferritin fold; 2.00A {Microbacterium arborescens} PDB: 2yjj_A
Probab=21.62 E-value=1.3e+02 Score=21.21 Aligned_cols=33 Identities=12% Similarity=0.094 Sum_probs=29.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhh
Q psy9793 70 LQALKRKAGESIGEELQVGHVCKRRIEHLKEHS 102 (133)
Q Consensus 70 l~~LKRKL~~~~~eE~~~~~r~k~Rl~hL~el~ 102 (133)
+..|..++++..+++...++.+..||-.|....
T Consensus 51 f~~lh~~~ee~~~e~~~~aD~lAERI~~LGg~P 83 (161)
T 2yjk_A 51 FIAIHELLDSVVAHAQDYADTAAERIVALGLPI 83 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 677889999999999999999999999986544
No 96
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=21.24 E-value=3.6e+02 Score=24.47 Aligned_cols=30 Identities=10% Similarity=0.219 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy9793 22 KFRAVQKTIDREVSYVQSAANELEKTIASS 51 (133)
Q Consensus 22 nFR~~QK~IEkE~~~v~~~~~eL~k~l~~~ 51 (133)
+++..-+-++|++..+.+.+..+.+.+++.
T Consensus 797 d~~~~~~rl~k~~~~~~~~~~~~~~~l~~~ 826 (862)
T 1gax_A 797 DVEEWRRRQEKRLKELLALAERSQRKLASP 826 (862)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhccCc
Confidence 445555668889999999999998888764
No 97
>1n1q_A DPS protein; four-helix bundle, unknown function; 2.20A {Brevibacillus brevis} SCOP: a.25.1.1
Probab=21.21 E-value=1.4e+02 Score=20.26 Aligned_cols=32 Identities=16% Similarity=0.036 Sum_probs=28.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhh
Q psy9793 70 LQALKRKAGESIGEELQVGHVCKRRIEHLKEH 101 (133)
Q Consensus 70 l~~LKRKL~~~~~eE~~~~~r~k~Rl~hL~el 101 (133)
+.++..++.+..++|...++.+..||-.|-..
T Consensus 39 f~~lh~~~~~~~~ee~~had~laeri~~lGg~ 70 (149)
T 1n1q_A 39 FFTLHEKFEELYTEASGHIDTLAERVLSIGGS 70 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 78899999999999999999999999887543
No 98
>2bk6_A Non-heme iron-containing ferritin; DPS (DNA binding protein from starved cells), ferroxidase center, mutagenesis study; 2.19A {Listeria innocua} SCOP: a.25.1.1 PDB: 1qgh_A 2bjy_A 2iy4_A 2bkc_A
Probab=21.03 E-value=1.3e+02 Score=20.86 Aligned_cols=33 Identities=12% Similarity=0.037 Sum_probs=29.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhh
Q psy9793 70 LQALKRKAGESIGEELQVGHVCKRRIEHLKEHS 102 (133)
Q Consensus 70 l~~LKRKL~~~~~eE~~~~~r~k~Rl~hL~el~ 102 (133)
+..+..++++..+++....+.+..||-.|....
T Consensus 39 f~~lh~~~ee~~~e~~~~~D~lAERI~~Lgg~P 71 (156)
T 2bk6_A 39 FFTLHEKMDDLYSEFGEQMDEVAERLLAIGGSP 71 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 677899999999999999999999999986543
No 99
>2chp_A MRGA, metalloregulation DNA-binding stress protein; DNA-binding protein, DPS, dodecameric, ferritin; 2.0A {Bacillus subtilis}
Probab=20.88 E-value=1.3e+02 Score=20.80 Aligned_cols=33 Identities=12% Similarity=0.096 Sum_probs=29.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhh
Q psy9793 70 LQALKRKAGESIGEELQVGHVCKRRIEHLKEHS 102 (133)
Q Consensus 70 l~~LKRKL~~~~~eE~~~~~r~k~Rl~hL~el~ 102 (133)
+..+..++++..+++....+.+..||-.|....
T Consensus 43 f~~lh~~~ee~~~e~~~~~D~lAERI~~LGg~P 75 (153)
T 2chp_A 43 FFTLHEKFEELYDHAAETVDTIAERLLAIGGQP 75 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 678899999999999999999999999986543
No 100
>2c41_A DPS family DNA-binding stress response protein; iron-binding/oxidation protein, DPS (DNA-binding proteins from starved cells); HET: PG4 PGE; 1.81A {Thermosynechococcus elongatus}
Probab=20.77 E-value=1.4e+02 Score=20.60 Aligned_cols=32 Identities=16% Similarity=0.017 Sum_probs=28.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhh
Q psy9793 70 LQALKRKAGESIGEELQVGHVCKRRIEHLKEH 101 (133)
Q Consensus 70 l~~LKRKL~~~~~eE~~~~~r~k~Rl~hL~el 101 (133)
+.+|..++++..++|....+.+..||-.|-..
T Consensus 41 f~~lh~~~~~~~~ee~~had~iaErI~~lGg~ 72 (158)
T 2c41_A 41 FRDLHLLFEEQGSEVFAMIDELAERSLMLDGQ 72 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 78899999999999999999999999887543
No 101
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.21 E-value=2.3e+02 Score=19.76 Aligned_cols=80 Identities=16% Similarity=0.220 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHhcCCCC---CChHHHHHHHHHHHHHHHHHHHHHhhH
Q psy9793 16 YEILNKKFRAVQKTIDREVS------------YVQSAANELEKTIASSEK---PPLTEVTRLLGGMFERLQALKRKAGES 80 (133)
Q Consensus 16 yElLrKnFR~~QK~IEkE~~------------~v~~~~~eL~k~l~~~~~---~~~~~a~~~Ld~lI~rl~~LKRKL~~~ 80 (133)
|+.+|..++.+-..|.+-++ --...+.+|.+.++-..- ..+ ..-.. .+.|..||.+.
T Consensus 12 l~~ik~~h~~AF~~Is~AL~~DE~g~k~~Al~lYk~GI~eLe~Gl~I~~~~~~~~g-~~we~-------Ar~lq~KM~~n 83 (116)
T 2dl1_A 12 IKIIREAYKKAFLFVNKGLNTDELGQKEEAKNYYKQGIGHLLRGISISSKESEHTG-PGWES-------ARQMQQKMKET 83 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSCCCCTTCCC-SHHHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHhccccccCCCCCC-hhHHH-------HHHHHHHHHHH
Confidence 44566666666666665222 345667777777653210 112 22222 34444444433
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCCCCCC
Q psy9793 81 IGEELQVGHVCKRRIEHLKEHSGNVLSNTS 110 (133)
Q Consensus 81 ~~eE~~~~~r~k~Rl~hL~el~~~~~~~~~ 110 (133)
+...+.||..|.....+...+.+
T Consensus 84 -------L~~v~~RL~~Le~~~~~~~~~~~ 106 (116)
T 2dl1_A 84 -------LQNVRTRLEILEKGLATSLQNDL 106 (116)
T ss_dssp -------HHHHHHHHHHHHHHHCSSCSSCC
T ss_pred -------HHHHHHHHHHHHhcCCCccccch
Confidence 55788999999988765444443
No 102
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=20.18 E-value=2.4e+02 Score=19.97 Aligned_cols=64 Identities=11% Similarity=0.167 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC--CCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhh
Q psy9793 26 VQKTIDREVSYVQSAANELEKTIAS--SEKPPLTEVTRLLGGMFERLQALKRKAGESIGEELQVGHVCKRRIEHLKEH 101 (133)
Q Consensus 26 ~QK~IEkE~~~v~~~~~eL~k~l~~--~~~~~~~~a~~~Ld~lI~rl~~LKRKL~~~~~eE~~~~~r~k~Rl~hL~el 101 (133)
.-..|..++..+...+.+|.+.... +..+.+ + ...++++++....+=......|+.+|.-|+..
T Consensus 10 ~~~~i~~~i~~i~~~v~~L~~l~~~~l~~~~~~-~-----------~~~~~~~i~~l~~~i~~~~~~~~~~lk~l~~~ 75 (196)
T 1fio_A 10 KISQINRDLDKYDHTINQVDSLHKRLLTEVNEE-Q-----------ASHLRHSLDNFVAQATDLQFKLKNEIKSAQRD 75 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHH-H-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChh-h-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344555666666666666654221 111111 0 12345555555555555556666666655543
No 103
>2cf7_A DPR; peroxide resistance, DPS-family, ferritin-like, ferroxidase, iron-binding; HET: EPE; 1.50A {Streptococcus suis} PDB: 2ux1_A* 2bw1_A* 1umn_A* 2v15_A* 2xjm_A* 2xjn_A* 2xjo_A* 2xkq_A*
Probab=20.18 E-value=1.4e+02 Score=21.14 Aligned_cols=33 Identities=15% Similarity=-0.011 Sum_probs=29.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhh
Q psy9793 70 LQALKRKAGESIGEELQVGHVCKRRIEHLKEHS 102 (133)
Q Consensus 70 l~~LKRKL~~~~~eE~~~~~r~k~Rl~hL~el~ 102 (133)
+..|..++++..+++....+.+..||-.|....
T Consensus 48 f~~lh~~~ee~~~e~~~haD~lAERIl~LGg~P 80 (165)
T 2cf7_A 48 FMIWHPKMDEYMEEIDGYLAEMSERLITLGGAP 80 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 677889999999999999999999999986543
No 104
>3ak8_A DNA protection during starvation protein; DPS-like protein, dodecamer, iron-binding protein, metal BIN protein, oxidoreductase; HET: DNA; 1.25A {Salmonella enterica subsp} PDB: 3ak9_A* 1f33_A* 1f30_A* 1dps_A 1jts_A* 1jre_A* 1l8h_A* 1l8i_A* 4dyu_A*
Probab=20.01 E-value=1.4e+02 Score=21.12 Aligned_cols=33 Identities=9% Similarity=-0.098 Sum_probs=28.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhh
Q psy9793 70 LQALKRKAGESIGEELQVGHVCKRRIEHLKEHS 102 (133)
Q Consensus 70 l~~LKRKL~~~~~eE~~~~~r~k~Rl~hL~el~ 102 (133)
+..|..++++..+++....+.+..||-.|....
T Consensus 59 f~~lh~~~ee~~~e~~~~aD~lAERI~~LGg~P 91 (167)
T 3ak8_A 59 FIAVHEMLDGFRTALTDHLDTMAERAVQLGGVA 91 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 567789999999999999999999999986543
Done!