RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9793
         (133 letters)



>d3bi1a1 a.48.2.1 (A:594-750) Glutamate carboxypeptidase II {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 157

 Score = 25.8 bits (56), Expect = 1.4
 Identities = 8/26 (30%), Positives = 13/26 (50%)

Query: 21  KKFRAVQKTIDREVSYVQSAANELEK 46
           K +  V++ I      VQ+AA  L +
Sbjct: 130 KAWGEVKRQIYVAAFTVQAAAETLSE 155


>d1ejxc2 c.1.9.2 (C:1130-1422,C:1476-1567) alpha-subunit of urease,
           catalytic domain {Klebsiella aerogenes [TaxId: 28451]}
          Length = 385

 Score = 24.7 bits (54), Expect = 4.0
 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 71  QALKRKAGESIGEELQVGHVCKRRIEHLKEHSG 103
           QA+ R  GE I    QV H  K +   L E +G
Sbjct: 233 QAMGR-VGEVILRTWQVAHRMKVQRGALAEETG 264


>d1nzea_ a.24.18.1 (A:) Oxygen-evolving enhancer protein 3,
          {Spinach (Spinacia oleracea) [TaxId: 3562]}
          Length = 112

 Score = 24.3 bits (53), Expect = 4.1
 Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 1/60 (1%)

Query: 18 ILNKKFRAVQKTIDREVSYVQSAANELEKTIASSEKPPLTEVTRLLGGMFERL-QALKRK 76
          I  K + ++Q  +    SY++     +       EK  L E+T  L    + L  A K K
Sbjct: 29 IDRKAWPSLQNDLRLRASYLRYDLKTVISAKPKDEKKSLQELTSKLFSSIDNLDHAAKIK 88


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.132    0.384 

Gapped
Lambda     K      H
   0.267   0.0682    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 483,329
Number of extensions: 19782
Number of successful extensions: 40
Number of sequences better than 10.0: 1
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 7
Length of query: 133
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 57
Effective length of database: 1,364,116
Effective search space: 77754612
Effective search space used: 77754612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 48 (22.4 bits)