BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy9794
         (255 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1BXS|A Chain A, Sheep Liver Class 1 Aldehyde Dehydrogenase With Nad Bound
 pdb|1BXS|B Chain B, Sheep Liver Class 1 Aldehyde Dehydrogenase With Nad Bound
 pdb|1BXS|C Chain C, Sheep Liver Class 1 Aldehyde Dehydrogenase With Nad Bound
 pdb|1BXS|D Chain D, Sheep Liver Class 1 Aldehyde Dehydrogenase With Nad Bound
          Length = 501

 Score = 31.2 bits (69), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 174 FQLGSGWTTHE-SLRPLVYSTLADLVHHVRQLLPMSDLIKAVHLFSKNIHDETLPTTIHT 232
           FQ+GS W T + S R  + + LADL+   R LL   + +    LFS N +   L   I T
Sbjct: 71  FQIGSPWRTMDASERGRLLNKLADLIERDRLLLATMEAMNGGKLFS-NAYLMDLGGCIKT 129

Query: 233 M 233
           +
Sbjct: 130 L 130


>pdb|1O9J|A Chain A, The X-Ray Crystal Structure Of Eta-Crystallin
 pdb|1O9J|B Chain B, The X-Ray Crystal Structure Of Eta-Crystallin
 pdb|1O9J|C Chain C, The X-Ray Crystal Structure Of Eta-Crystallin
 pdb|1O9J|D Chain D, The X-Ray Crystal Structure Of Eta-Crystallin
          Length = 501

 Score = 30.4 bits (67), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 172 EDFQLGSGWTTHE-SLRPLVYSTLADLVHHVRQLLPMSDLIKAVHLFS 218
           E FQ+GS W T + S R  +   LADL+   R LL   + I A  +F+
Sbjct: 69  EAFQMGSPWRTMDASERGQLIYKLADLIERDRLLLATLESINAGKVFA 116


>pdb|3IJD|A Chain A, Uncharacterized Protein Cthe_2304 From Clostridium
           Thermocellum Binds Two Copies Of 5-Methyl-5,6,7,8-
           Tetrahydrofolic Acid
 pdb|3IJD|B Chain B, Uncharacterized Protein Cthe_2304 From Clostridium
           Thermocellum Binds Two Copies Of 5-Methyl-5,6,7,8-
           Tetrahydrofolic Acid
          Length = 315

 Score = 28.1 bits (61), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 5/75 (6%)

Query: 43  LPLIIVLVYQLYKENVKKDLEEFIP-IILKTVNLKPPIDF--VTAPEIYKEIYVDFIGAQ 99
            P I  +  Q+Y EN  KDL+  IP II + V    P +F  +T P   ++ +  F+GA 
Sbjct: 69  FPFIETIDPQIYSENYLKDLK--IPKIIYRCVGKYTPDEFRRLTRPVSGQDAFSVFVGAA 126

Query: 100 IKTLSFLAYLVRFYQ 114
            +  S L  L   Y+
Sbjct: 127 SRNQSVLLKLSDAYK 141


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.139    0.406 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,651,199
Number of Sequences: 62578
Number of extensions: 251559
Number of successful extensions: 617
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 617
Number of HSP's gapped (non-prelim): 5
length of query: 255
length of database: 14,973,337
effective HSP length: 97
effective length of query: 158
effective length of database: 8,903,271
effective search space: 1406716818
effective search space used: 1406716818
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)