BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9794
(255 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9Y4A5|TRRAP_HUMAN Transformation/transcription domain-associated protein OS=Homo
sapiens GN=TRRAP PE=1 SV=3
Length = 3859
Score = 258 bits (660), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 126/224 (56%), Positives = 166/224 (74%)
Query: 29 IFPRGYQSLKSMQELPLIIVLVYQLYKENVKKDLEEFIPIILKTVNLKPPIDFVTAPEIY 88
I PRG SLK + ELP+I+VL+YQLYK N+ + EF+P+I+ T+ ++
Sbjct: 214 IIPRGSLSLKVLAELPIIVVLMYQLYKLNIHNVVAEFVPLIMNTIAIQVSAQARQHKLYN 273
Query: 89 KEIYVDFIGAQIKTLSFLAYLVRFYQDILNKHSQLLVDGVLNLLLLCPSEVTSMRKELLI 148
KE+Y DFI AQIKTLSFLAY++R YQ+++ K+SQ +V G+L LL CP+E +RKELLI
Sbjct: 274 KELYADFIAAQIKTLSFLAYIIRIYQELVTKYSQQMVKGMLQLLSNCPAETAHLRKELLI 333
Query: 149 AARHILQTDFRTNFVPHMSQLFEEDFQLGSGWTTHESLRPLVYSTLADLVHHVRQLLPMS 208
AA+HIL T+ R F+P M +LF+E +GSG+T E+LRPL YSTLADLVHHVRQ LP+S
Sbjct: 334 AAKHILTTELRNQFIPCMDKLFDESILIGSGYTARETLRPLAYSTLADLVHHVRQHLPLS 393
Query: 209 DLIKAVHLFSKNIHDETLPTTIHTMSCKLLRNVVDFIHTKNQAE 252
DL AV LF+KNI DE+LP++I TMSCKLL N+VD I +K++ E
Sbjct: 394 DLSLAVQLFAKNIDDESLPSSIQTMSCKLLLNLVDCIRSKSEQE 437
>sp|Q54T85|TRA1_DICDI Probable transcription-associated protein 1 OS=Dictyostelium
discoideum GN=tra1 PE=3 SV=2
Length = 4582
Score = 162 bits (410), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 77/217 (35%), Positives = 143/217 (65%), Gaps = 3/217 (1%)
Query: 32 RGYQSLKSMQELPLIIVLVYQLYKENVKKDLEEFIPIILKTVNLKPPIDFVTAPEIYKEI 91
+ +S K + E P++++L++QLY + ++ +FIP+I++T++L+ P + +
Sbjct: 304 KSIESFKILTECPIVVILLFQLYNSYMSSNVPKFIPLIIETLSLQAPANSTVT---HHSQ 360
Query: 92 YVDFIGAQIKTLSFLAYLVRFYQDILNKHSQLLVDGVLNLLLLCPSEVTSMRKELLIAAR 151
YVDFI AQ+KTL LAY+++++ + + ++S V+ LL CP+ +++RKELL+ R
Sbjct: 361 YVDFIAAQVKTLYLLAYVLKWHIEQIKQYSDRFPRSVIQLLQNCPAHSSAIRKELLVTLR 420
Query: 152 HILQTDFRTNFVPHMSQLFEEDFQLGSGWTTHESLRPLVYSTLADLVHHVRQLLPMSDLI 211
HIL +DF++ F+ ++ L +E LG+ T++ESLR + Y +LAD +H++R L ++ +
Sbjct: 421 HILSSDFKSKFIVYLDLLLDEKIILGTSRTSYESLRSMAYGSLADFIHNMRNELNINQIS 480
Query: 212 KAVHLFSKNIHDETLPTTIHTMSCKLLRNVVDFIHTK 248
K V ++S+++HD+T P +I MS KL+ +++D I K
Sbjct: 481 KVVAIYSRHLHDQTNPVSIQIMSVKLIISLMDVIQRK 517
>sp|P38811|TRA1_YEAST Transcription-associated protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TRA1 PE=1 SV=1
Length = 3744
Score = 151 bits (382), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 90/247 (36%), Positives = 140/247 (56%), Gaps = 22/247 (8%)
Query: 16 FVKRNCSIGFQIRIFPRGYQSLKSMQELPLIIVLVYQLYKENVKKDLEEFIPIILKTVNL 75
F S G + +F S K + E P+ +V +Y YK+ L EF P+I+ +N+
Sbjct: 205 FENSTSSNGLRSSMF-----SFKILSECPITMVTLYSSYKQLTSTSLPEFTPLIMNLLNI 259
Query: 76 K---------------PPIDFVTAPEIYKEIYVDFIGAQIKTLSFLAYL-VRFYQ-DILN 118
+ ++ I + Y DFI AQIK SFLAY+ +R Y + L
Sbjct: 260 QIKQQQEAREQAESRGEHFTSISTEIINRPAYCDFILAQIKATSFLAYVFIRGYAPEFLQ 319
Query: 119 KHSQLLVDGVLNLLLLCPSEVTSMRKELLIAARHILQTDFRTNFVPHMSQLFEEDFQLGS 178
+ + D ++ LL CPSE++S RKELL A RHIL T+++ F+P + LF+E +G+
Sbjct: 320 DYVNFVPDLIIRLLQDCPSELSSARKELLHATRHILSTNYKKLFLPKLDYLFDERILIGN 379
Query: 179 GWTTHESLRPLVYSTLADLVHHVRQLLPMSDLIKAVHLFSKNIHDETLPTTIHTMSCKLL 238
G+T HE+LRPL YST+AD +H++R L +S++ K + +++ + DE+L T+ MS KLL
Sbjct: 380 GFTMHETLRPLAYSTVADFIHNIRSELQLSEIEKTIKIYTGYLLDESLALTVQIMSAKLL 439
Query: 239 RNVVDFI 245
N+V+ I
Sbjct: 440 LNLVERI 446
>sp|Q10064|YAMB_SCHPO Uncharacterized PI3/PI4-kinase family protein C1F5.11c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC1F5.11c PE=3 SV=1
Length = 3655
Score = 150 bits (379), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 87/222 (39%), Positives = 132/222 (59%), Gaps = 14/222 (6%)
Query: 35 QSLKSMQELPLIIVLVYQLYKENVKKDLEEFIPIILKTVNLKPPIDFVTAPEIYKEIYVD 94
QS + E P+IIVL+ Q Y++ ++ IP LK V + PID + I K+ +D
Sbjct: 205 QSFRVYVECPVIIVLILQAYRQAAFPGVQAIIPCFLKMVQIDVPIDIASYAMIEKDSSID 264
Query: 95 FIG-------------AQIKTLSFLAYLVRFYQDILNKHSQLLVDGVLNLLLLCPSEVTS 141
FI AQ+KTLSFLAY++R + + L++ ++ D V+ LL CP ++
Sbjct: 265 FIEFIRNKYQYRNFFMAQVKTLSFLAYILRTHPNTLSE-KDIIPDIVIKLLRRCPFDMCF 323
Query: 142 MRKELLIAARHILQTDFRTNFVPHMSQLFEEDFQLGSGWTTHESLRPLVYSTLADLVHHV 201
RKELL+A RHIL T+ ++ FV + L + + LG+G T + LRPL +STLADL+HHV
Sbjct: 324 ARKELLVATRHILSTNLKSLFVKKLDFLLDLNILLGNGVGTQKLLRPLAFSTLADLLHHV 383
Query: 202 RQLLPMSDLIKAVHLFSKNIHDETLPTTIHTMSCKLLRNVVD 243
R L + + K++ ++S N+HD TL + TM +L+ N+VD
Sbjct: 384 RDELNETQIRKSIMIYSTNMHDLTLSIGLQTMGARLILNMVD 425
>sp|Q8I8U7|TRA1_DROME Transcription-associated protein 1 OS=Drosophila melanogaster
GN=Nipped-A PE=1 SV=3
Length = 3803
Score = 146 bits (368), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 73/124 (58%), Positives = 89/124 (71%), Gaps = 1/124 (0%)
Query: 129 LNLLLLCPSEVTSMRKELLIAARHILQTDFRTNFVPHMSQLFEEDFQLGSGWTTHESLRP 188
LNL+ CP E +RKELLIAARHI TD R F+P + QLF+ED +G G T +S+RP
Sbjct: 370 LNLMKNCPKEAAHLRKELLIAARHIFATDLRQKFIPSIEQLFDEDLLIGKG-VTLDSIRP 428
Query: 189 LVYSTLADLVHHVRQLLPMSDLIKAVHLFSKNIHDETLPTTIHTMSCKLLRNVVDFIHTK 248
L YSTLADL HHVRQ L + LIKAV+LFSKN+HDE+L I TMSCKLL N+VD +
Sbjct: 429 LAYSTLADLAHHVRQSLNIDVLIKAVNLFSKNVHDESLAVGIQTMSCKLLLNLVDCLRHH 488
Query: 249 NQAE 252
++ E
Sbjct: 489 SETE 492
>sp|Q9HFE8|TRA1_SCHPO Transcription-associated protein 1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=tra1 PE=3 SV=1
Length = 3699
Score = 145 bits (365), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 80/233 (34%), Positives = 131/233 (56%), Gaps = 15/233 (6%)
Query: 28 RIFPRGYQSLKSMQELPLIIVLVYQLYKENVKKDLEEFIPIILKTVNLKPP--IDFVTAP 85
++ P+ S K E P+I+ L++Q YK+ + K L P++L+ ++L+PP +
Sbjct: 230 KMIPKASSSFKVTAEFPIIVFLLFQTYKDLIPKMLPLLAPLVLQFISLRPPPQAEARRLA 289
Query: 86 EIYKEIYV-------------DFIGAQIKTLSFLAYLVRFYQDILNKHSQLLVDGVLNLL 132
E KE+++ D I AQIK+ SFLAYL+R + L + + L L
Sbjct: 290 ESQKEVFIGVVPSLRRNHLYNDLISAQIKSFSFLAYLLRSFGAALKQFESSIPICTLQLF 349
Query: 133 LLCPSEVTSMRKELLIAARHILQTDFRTNFVPHMSQLFEEDFQLGSGWTTHESLRPLVYS 192
+ CPSE+ R+ELL+A RH+L TD+ F+P++ QL + +GSG T+ SLRP+ +S
Sbjct: 350 MDCPSELYQTRRELLVATRHVLSTDYLRGFLPYVDQLLDTKILVGSGITSQHSLRPMAFS 409
Query: 193 TLADLVHHVRQLLPMSDLIKAVHLFSKNIHDETLPTTIHTMSCKLLRNVVDFI 245
LAD++H+VR L + K + L+ + D+ + I M+ KL+ N+V+ I
Sbjct: 410 MLADMLHYVRMELSPQQIYKVILLYFSILMDDFYTSAIQAMATKLILNLVERI 462
>sp|Q8T6J1|ABCA6_DICDI ABC transporter A family member 6 OS=Dictyostelium discoideum
GN=abcA6 PE=3 SV=1
Length = 1631
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 56/145 (38%), Gaps = 8/145 (5%)
Query: 98 AQIKTLSFLAYLVRFYQDILNKHSQLLVDGVLNLLLLCPSEVTSMRKELLIAARHILQTD 157
Q S++AY Y H L+ D +L VTSM + ++ A I +D
Sbjct: 983 GQSTNCSYIAYYNSDYIHSFPIHVNLINDALLRKFKNISISVTSMPFDHILTAFEISSSD 1042
Query: 158 FRTNFVPHMSQLFEEDFQLGSGWTTHESLRPLVYSTLADLVHHVRQLLPMSDLIKAVHLF 217
+ + + + F L +G S + + V++LL +S K ++
Sbjct: 1043 INASAIIYFVFILMAGFSLMAG--------SFAGSIAQERTNRVKRLLYVSGCKKHIYWL 1094
Query: 218 SKNIHDETLPTTIHTMSCKLLRNVV 242
S + D I +SC +L V+
Sbjct: 1095 SNLVWDFFFAFIISILSCSILAGVI 1119
>sp|Q2M3C7|SPKAP_HUMAN A-kinase anchor protein SPHKAP OS=Homo sapiens GN=SPHKAP PE=1 SV=1
Length = 1700
Score = 31.6 bits (70), Expect = 5.2, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 187 RPLVYSTLADLVHHVRQLLPMSDLIKAVHLFSKNIHDETLPTTIHTMSCKLLRNVVDFIH 246
RP YS++ D + + + + M K+ L S+N+ L HT+S +LR+ +D +H
Sbjct: 629 RPNTYSSIGDFLDSMNRRI-METASKSQTLCSENVVRNELA---HTLSNVILRHSIDEVH 684
Query: 247 TKN 249
KN
Sbjct: 685 HKN 687
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.140 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,786,560
Number of Sequences: 539616
Number of extensions: 3486229
Number of successful extensions: 11432
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 11413
Number of HSP's gapped (non-prelim): 17
length of query: 255
length of database: 191,569,459
effective HSP length: 115
effective length of query: 140
effective length of database: 129,513,619
effective search space: 18131906660
effective search space used: 18131906660
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)