Query psy9794
Match_columns 255
No_of_seqs 109 out of 139
Neff 4.7
Searched_HMMs 46136
Date Fri Aug 16 19:54:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9794.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9794hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0889|consensus 100.0 2.5E-55 5.4E-60 481.1 14.8 187 30-254 190-378 (3550)
2 PF08506 Cse1: Cse1; InterPro 62.1 1.6E+02 0.0034 28.6 15.6 186 38-238 111-370 (370)
3 KOG0889|consensus 61.3 5.7 0.00012 48.2 2.5 119 123-253 855-973 (3550)
4 PF07571 DUF1546: Protein of u 43.8 97 0.0021 24.0 6.2 57 184-241 20-76 (92)
5 KOG3937|consensus 43.1 1.4E+02 0.003 29.5 8.3 66 103-180 239-305 (371)
6 PF10521 DUF2454: Protein of u 42.8 2.7E+02 0.0059 25.5 12.1 168 41-227 96-280 (282)
7 PF12460 MMS19_C: RNAPII trans 37.3 1.1E+02 0.0024 29.6 6.8 86 28-131 323-414 (415)
8 PF14225 MOR2-PAG1_C: Cell mor 36.4 2.2E+02 0.0048 26.4 8.4 75 104-208 168-244 (262)
9 PF12348 CLASP_N: CLASP N term 34.7 2.9E+02 0.0063 23.6 8.7 139 98-246 23-163 (228)
10 PF04352 ProQ: ProQ/FINO famil 34.1 39 0.00086 27.3 2.7 34 186-219 27-62 (114)
11 PF01017 STAT_alpha: STAT prot 31.8 3.2E+02 0.0069 23.7 8.2 95 138-242 72-180 (182)
12 PRK15054 nitrate reductase 2 s 31.8 1.2E+02 0.0026 28.0 5.7 110 46-179 83-197 (231)
13 PF09184 PPP4R2: PPP4R2; Inte 31.0 1.5E+02 0.0032 27.9 6.4 90 144-236 3-106 (288)
14 cd00020 ARM Armadillo/beta-cat 28.5 2.4E+02 0.0051 20.6 7.2 69 102-173 27-103 (120)
15 PF13513 HEAT_EZ: HEAT-like re 27.8 1.1E+02 0.0025 20.4 3.8 45 103-150 8-52 (55)
16 KOG2300|consensus 27.2 79 0.0017 32.8 4.0 53 183-245 83-137 (629)
17 COG2937 PlsB Glycerol-3-phosph 25.9 8.9E+02 0.019 26.4 11.5 140 43-192 619-787 (810)
18 PF14837 INTS5_N: Integrator c 25.5 94 0.002 28.3 3.9 57 106-166 8-65 (213)
19 PF12717 Cnd1: non-SMC mitotic 25.2 4.2E+02 0.009 22.4 11.5 102 105-223 11-116 (178)
20 KOG1824|consensus 24.6 1.6E+02 0.0035 32.8 5.9 82 89-171 442-523 (1233)
21 PF14500 MMS19_N: Dos2-interac 23.5 1.7E+02 0.0038 26.9 5.3 51 176-226 4-56 (262)
22 KOG2305|consensus 22.6 92 0.002 29.5 3.3 52 144-200 79-135 (313)
23 PF11865 DUF3385: Domain of un 20.8 2.4E+02 0.0052 23.9 5.3 78 120-202 83-160 (160)
24 PF08167 RIX1: rRNA processing 20.7 5.2E+02 0.011 21.8 8.5 91 43-147 46-142 (165)
25 PF08767 CRM1_C: CRM1 C termin 20.4 7.2E+02 0.016 23.3 12.8 133 102-244 92-248 (319)
No 1
>KOG0889|consensus
Probab=100.00 E-value=2.5e-55 Score=481.14 Aligned_cols=187 Identities=45% Similarity=0.777 Sum_probs=176.1
Q ss_pred cccccc--hhHhhhhhhHHHHHHHhhhhhhHHhhHHHHHHHHHHhhcCCCCccccCChhhhHHHHHHHHHhHHHHHHHHH
Q psy9794 30 FPRGYQ--SLKSMQELPLIIVLVYQLYKENVKKDLEEFIPIILKTVNLKPPIDFVTAPEIYKEIYVDFIGAQIKTLSFLA 107 (255)
Q Consensus 30 l~~~~~--SfKVL~E~Piivv~l~Q~Yk~~v~~~i~~fiPli~~~l~l~~~~q~~~~p~~n~~~y~Dfi~AQVKtlSFLa 107 (255)
.+++++ ||||++|||++||++||+||+++++++++|+|++++++++++|.
T Consensus 190 ~~p~~~~~s~kvl~e~p~iv~~~~q~yk~~i~~~i~~~~pL~~~~l~v~~~d---------------------------- 241 (3550)
T KOG0889|consen 190 LLPSTYPQSFKVLAECPIIVVLLYQLYKQLIQTGIPELLPLILNFLSVRVPD---------------------------- 241 (3550)
T ss_pred cCcccccceeeeheeccHHHHHHHHHHHHHhhhhhHHHHHHHHHHhCCCCCC----------------------------
Confidence 334444 99999999999999999999999999999999999999999882
Q ss_pred HHHHHhHHHhhhhHhhHHHHHHHHhhcCCchhhhHHHHHHHHHHHHhchhhhhcchhhhhhccccccccccCcccccchh
Q psy9794 108 YLVRFYQDILNKHSQLLVDGVLNLLLLCPSEVTSMRKELLIAARHILQTDFRTNFVPHMSQLFEEDFQLGSGWTTHESLR 187 (255)
Q Consensus 108 YvlR~~~~~i~~~~~~i~~~ii~LL~~CP~e~~~~RKELLva~RHIlsTd~R~~F~p~id~LlDErvLiG~G~t~~EtLR 187 (255)
.+|+..+.+++++||.+||+|..++|||||+|||||++||||++|+|+||+|+||+||+|+|+|++|+||
T Consensus 242 ----------~~~~~~~~~~~~~ll~~CP~el~~~RkElL~a~rhilst~~k~~f~P~id~L~de~iLiG~G~t~~e~lR 311 (3550)
T KOG0889|consen 242 ----------SPYWMFLSDGTLQLLYDCPSELLSLRKELLVATRHILSTDLKRGFLPMIDKLLDERILIGTGFTAQESLR 311 (3550)
T ss_pred ----------CccchhHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhHhHHhhhhhhhHHHhccceeecCCcchhhhcc
Confidence 0666666699999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhhCCCCHHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHhhhhhhhccCccccC
Q psy9794 188 PLVYSTLADLVHHVRQLLPMSDLIKAVHLFSKNIHDETLPTTIHTMSCKLLRNVVDFIHTKNQAEID 254 (255)
Q Consensus 188 pLAYS~lADliHhvR~~Ls~~qi~~~v~~fs~~lhD~sL~~siQ~ms~kLLlnLve~I~~~~~~~~~ 254 (255)
|+||||||||+||||++|+++||.++|.+||+|+||++++.++|||||||++||||+|.+++.+|.+
T Consensus 312 plays~LAdllHhvR~~L~~~~i~~~i~l~s~~l~D~~l~~~iq~m~akLllNlve~i~~~~~~s~~ 378 (3550)
T KOG0889|consen 312 PLAYSMLADLLHHVRESLSLTQIIKVISLFSRNLHDSSLSSGIQTMSAKLLLNLVERIEELGCQSVD 378 (3550)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCcchHHHHHHHHHHHHHHHHHHHHHhcCCchh
Confidence 9999999999999999999999999999999999999999999999999999999999999766543
No 2
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=62.10 E-value=1.6e+02 Score=28.61 Aligned_cols=186 Identities=17% Similarity=0.265 Sum_probs=0.0
Q ss_pred HhhhhhhHHHHHHHhhhhhhHHhhHHHHHHHHHHhhcCCCCccccCChhhhHHHHHHHHHhHHHHHHHHHHHHHH--hHH
Q psy9794 38 KSMQELPLIIVLVYQLYKENVKKDLEEFIPIILKTVNLKPPIDFVTAPEIYKEIYVDFIGAQIKTLSFLAYLVRF--YQD 115 (255)
Q Consensus 38 KVL~E~Piivv~l~Q~Yk~~v~~~i~~fiPli~~~l~l~~~~q~~~~p~~n~~~y~Dfi~AQVKtlSFLaYvlR~--~~~ 115 (255)
||=+.+=-++-+..+-|.....+.++.|+..+.+.|.--.+... |..++. +++.||+.+.++ +.+
T Consensus 111 kvK~~i~~~~~ly~~kY~e~f~~~l~~fv~~vw~lL~~~~~~~~----------~D~lv~---~al~FL~~v~~~~~~~~ 177 (370)
T PF08506_consen 111 KVKAWICENLNLYAEKYEEEFEPFLPTFVQAVWNLLTKISQQPK----------YDILVS---KALQFLSSVAESPHHKN 177 (370)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTC--SSGG----------GHHHHH---HHHHHHHHHHTSHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc----------ccHHHH---HHHHHHHHHHcchhHHH
Q ss_pred Hh--hhhHhhHHHHH-----------HHHhhcCC----------chhhhHHH---HHHHHHHHHhchhhhhcchhhhhhc
Q psy9794 116 IL--NKHSQLLVDGV-----------LNLLLLCP----------SEVTSMRK---ELLIAARHILQTDFRTNFVPHMSQL 169 (255)
Q Consensus 116 ~i--~~~~~~i~~~i-----------i~LL~~CP----------~e~~~~RK---ELLva~RHIlsTd~R~~F~p~id~L 169 (255)
.. +++.+.|++.+ +.|.++.| +|..+.|+ ++|.++-.-...+....+..++..+
T Consensus 178 lf~~~~~L~~Iie~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~ 257 (370)
T PF08506_consen 178 LFENKPHLQQIIEKVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQL 257 (370)
T ss_dssp TT-SHHHHHHHHHHTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHhccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q ss_pred ccccc-------------------ccccCccccc---------------------------chhhhHHHHHHHHHHHhhC
Q psy9794 170 FEEDF-------------------QLGSGWTTHE---------------------------SLRPLVYSTLADLVHHVRQ 203 (255)
Q Consensus 170 lDErv-------------------LiG~G~t~~E---------------------------tLRpLAYS~lADliHhvR~ 203 (255)
+.+.- |-.+|.|... +=.|.--.---+++...|+
T Consensus 258 l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~ 337 (370)
T PF08506_consen 258 LQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRN 337 (370)
T ss_dssp HHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGG
T ss_pred HHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHh
Q ss_pred CCCHHHHHHHHHHhhcccCCCCchhHHHHHHHHHH
Q psy9794 204 LLPMSDLIKAVHLFSKNIHDETLPTTIHTMSCKLL 238 (255)
Q Consensus 204 ~Ls~~qi~~~v~~fs~~lhD~sL~~siQ~ms~kLL 238 (255)
.++.+++..++....+.|.+++.. +++-+|-.+
T Consensus 338 ~l~~~~l~~~~~~l~~~L~~~~~v--v~tyAA~~i 370 (370)
T PF08506_consen 338 QLPKEQLLQIFPLLVNHLQSSSYV--VHTYAAIAI 370 (370)
T ss_dssp GS-HHHHHHHHHHHHHHTTSS-HH--HHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHhCCCCcc--hhhhhhhhC
No 3
>KOG0889|consensus
Probab=61.32 E-value=5.7 Score=48.20 Aligned_cols=119 Identities=5% Similarity=-0.254 Sum_probs=94.9
Q ss_pred hHHHHHHHHhhcCCchhhhHHHHHHHHHHHHhchhhhhcchhhhhhccccccccccCcccccchhhhHHHHHHHHHHHhh
Q psy9794 123 LLVDGVLNLLLLCPSEVTSMRKELLIAARHILQTDFRTNFVPHMSQLFEEDFQLGSGWTTHESLRPLVYSTLADLVHHVR 202 (255)
Q Consensus 123 ~i~~~ii~LL~~CP~e~~~~RKELLva~RHIlsTd~R~~F~p~id~LlDErvLiG~G~t~~EtLRpLAYS~lADliHhvR 202 (255)
.-+++...+..+|+.++++. ...+.+|.--++.+..+ +|.++++.+..|.|-+ ..+-|++| ++.+||.+
T Consensus 855 ~~~qa~~~l~~~~~~~~~~~---~~~~~~~~~l~~~~~~~---i~~~~e~~~~n~~~~~-~~~~~~~a----~~~~~~~~ 923 (3550)
T KOG0889|consen 855 YRKQAFKYLRCDLLLMVNLS---ADFKSSIRQLLTLVVWS---IDLRLECCEINLDLTE-RYKSQDYS----DRSIFVNA 923 (3550)
T ss_pred hHHHHHHHHHHHHHHHHhhh---ccchhhHHHHHHhhcch---HHHhhHhhhccccccc-cccccchh----HHHHHHHH
Confidence 34445566667777776666 77888888888888888 9999999999999765 45678888 99999998
Q ss_pred CCCCHHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHhhhhhhhccCcccc
Q psy9794 203 QLLPMSDLIKAVHLFSKNIHDETLPTTIHTMSCKLLRNVVDFIHTKNQAEI 253 (255)
Q Consensus 203 ~~Ls~~qi~~~v~~fs~~lhD~sL~~siQ~ms~kLLlnLve~I~~~~~~~~ 253 (255)
......-.+... +...+.++-..-...++|.+.+..+.+.+.......++
T Consensus 924 l~~~~~a~~~~e-lr~~a~~~~~~il~~f~~~~~~~~~~~~~~~~~~~~~~ 973 (3550)
T KOG0889|consen 924 LISLFYATSCKE-LRDEAQDFLEAILRHFALHGVVLYTGSNQLKHSNFGSN 973 (3550)
T ss_pred HHHHHHHHhhHH-HHhhhHHHHHHHHHHHHHHHHHHhhcchhccccccccc
Confidence 777666666665 88888888889999999999999999999876665444
No 4
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=43.85 E-value=97 Score=24.02 Aligned_cols=57 Identities=19% Similarity=0.162 Sum_probs=46.8
Q ss_pred cchhhhHHHHHHHHHHHhhCCCCHHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHhh
Q psy9794 184 ESLRPLVYSTLADLVHHVRQLLPMSDLIKAVHLFSKNIHDETLPTTIHTMSCKLLRNV 241 (255)
Q Consensus 184 EtLRpLAYS~lADliHhvR~~Ls~~qi~~~v~~fs~~lhD~sL~~siQ~ms~kLLlnL 241 (255)
-.||-+|-++++.++..--...+ .--.|++..+.+.+.||+-|.+.+-=+..-|..|
T Consensus 20 ~~LRd~AA~lL~~I~~~~~~~~~-~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l 76 (92)
T PF07571_consen 20 WALRDFAASLLAQICRKFSSSYP-TLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL 76 (92)
T ss_pred HHHHHHHHHHHHHHHHHhccccc-hHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 37999999999999977655433 4445999999999999999999998887777766
No 5
>KOG3937|consensus
Probab=43.08 E-value=1.4e+02 Score=29.49 Aligned_cols=66 Identities=20% Similarity=0.409 Sum_probs=46.4
Q ss_pred HHHHHHHHHH-hHHHhhhhHhhHHHHHHHHhhcCCchhhhHHHHHHHHHHHHhchhhhhcchhhhhhccccccccccCc
Q psy9794 103 LSFLAYLVRF-YQDILNKHSQLLVDGVLNLLLLCPSEVTSMRKELLIAARHILQTDFRTNFVPHMSQLFEEDFQLGSGW 180 (255)
Q Consensus 103 lSFLaYvlR~-~~~~i~~~~~~i~~~ii~LL~~CP~e~~~~RKELLva~RHIlsTd~R~~F~p~id~LlDErvLiG~G~ 180 (255)
++|++|++-+ |... .+. ..++.||- |.+.+...+||+....=-||--..+ .+...|+..++--++|
T Consensus 239 fAFv~fl~g~~yesf-eqW-----k~ml~LL~-~S~a~~~kh~~ly~kfievlyhQLk-----~~p~dl~~~~l~~dn~ 305 (371)
T KOG3937|consen 239 FAFVCFLFGQSYESF-EQW-----KRMLSLLL-CSSAAVPKHKELYMKFIEVLYHQLK-----ELPEDLFVSILSEDNF 305 (371)
T ss_pred HHHHHHHHhhhHHHH-HHH-----HHHHHHHh-cCcccccccHHHHHHHHHHHHHHhc-----cChHHhhcchhccccc
Confidence 6899998744 4433 332 57888887 8889999999999887777765544 6666666666655544
No 6
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=42.76 E-value=2.7e+02 Score=25.54 Aligned_cols=168 Identities=15% Similarity=0.202 Sum_probs=114.8
Q ss_pred hhhhHHHHHHHhhhhhhHHhhHHHHHHHHHHhhcCCCCccccCChhhhHHHHHHHHHhHHHHHHHHHHHHHH-hHHH---
Q psy9794 41 QELPLIIVLVYQLYKENVKKDLEEFIPIILKTVNLKPPIDFVTAPEIYKEIYVDFIGAQIKTLSFLAYLVRF-YQDI--- 116 (255)
Q Consensus 41 ~E~Piivv~l~Q~Yk~~v~~~i~~fiPli~~~l~l~~~~q~~~~p~~n~~~y~Dfi~AQVKtlSFLaYvlR~-~~~~--- 116 (255)
+-.++.-+..-|.-+..+.++++-++|.++..+.=- .|+ + ..+-+--|..++.. .+..
T Consensus 96 ~~~~l~w~v~~~~~~~~i~~~~~liiP~iL~llDD~-------~~~-~----------K~~G~~lL~~ll~~~~~~~~~~ 157 (282)
T PF10521_consen 96 ASHVLSWIVLSQLDRPWISQHWPLIIPPILNLLDDY-------SPE-I----------KIQGCQLLHHLLEKVPAAEWDI 157 (282)
T ss_pred cHHHHHHHHHhcCCcchHHHhhhHHHhhHHHHhcCC-------CHH-H----------HHHHHHHHHHHHHhCChhhhHH
Confidence 334444444458888899999999999999887332 222 1 12223333333322 2222
Q ss_pred hhhh--HhhHHHHHHHHhhcCCc-----hhhhHHHHHHHHHHHHhchhhh---hcchhhhhhccccccccccCcccc---
Q psy9794 117 LNKH--SQLLVDGVLNLLLLCPS-----EVTSMRKELLIAARHILQTDFR---TNFVPHMSQLFEEDFQLGSGWTTH--- 183 (255)
Q Consensus 117 i~~~--~~~i~~~ii~LL~~CP~-----e~~~~RKELLva~RHIlsTd~R---~~F~p~id~LlDErvLiG~G~t~~--- 183 (255)
++.+ .+-+=+++..+|---|+ +...+=.+...|....+.+.+. ..-...+|+++.|.||-|--..+.
T Consensus 158 L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~ 237 (282)
T PF10521_consen 158 LRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSY 237 (282)
T ss_pred HHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCc
Confidence 4444 35555666667765553 5555556778888888776443 346778899999999988777766
Q ss_pred cchhhhHHHHHHHHHHHhhCCCCHHHHHHHHHHhhcccCCCCch
Q psy9794 184 ESLRPLVYSTLADLVHHVRQLLPMSDLIKAVHLFSKNIHDETLP 227 (255)
Q Consensus 184 EtLRpLAYS~lADliHhvR~~Ls~~qi~~~v~~fs~~lhD~sL~ 227 (255)
..+|......+..+|.++-- -+..-+.+.+.+.+..+-||..+
T Consensus 238 ~~l~~~ll~~l~~~i~~lGi-~~~~hL~rii~~l~~~l~npf~~ 280 (282)
T PF10521_consen 238 PRLRTVLLQQLPPIIDELGI-SSVKHLQRIIPVLSQILENPFGT 280 (282)
T ss_pred hhHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHhcCCCcC
Confidence 99999999999999998665 45688999999999999888654
No 7
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=37.31 E-value=1.1e+02 Score=29.58 Aligned_cols=86 Identities=15% Similarity=0.336 Sum_probs=55.1
Q ss_pred cccccccchhHhhhh-----hhHHHHHHHhhh-hhhHHhhHHHHHHHHHHhhcCCCCccccCChhhhHHHHHHHHHhHHH
Q psy9794 28 RIFPRGYQSLKSMQE-----LPLIIVLVYQLY-KENVKKDLEEFIPIILKTVNLKPPIDFVTAPEIYKEIYVDFIGAQIK 101 (255)
Q Consensus 28 ~~l~~~~~SfKVL~E-----~Piivv~l~Q~Y-k~~v~~~i~~fiPli~~~l~l~~~~q~~~~p~~n~~~y~Dfi~AQVK 101 (255)
.++|+=+.+||--.. +=..+..+...= ++.+.++++.++|++++.|+++-+. .+.=
T Consensus 323 ~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~------------------v~~s 384 (415)
T PF12460_consen 323 QVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDAD------------------VLLS 384 (415)
T ss_pred HHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHH------------------HHHH
Confidence 445555566665443 111222222222 2467789999999999999775331 2334
Q ss_pred HHHHHHHHHHHhHHHhhhhHhhHHHHHHHH
Q psy9794 102 TLSFLAYLVRFYQDILNKHSQLLVDGVLNL 131 (255)
Q Consensus 102 tlSFLaYvlR~~~~~i~~~~~~i~~~ii~L 131 (255)
+|.-+.-+++...+.+.+|.++++...+++
T Consensus 385 ~L~tL~~~l~~~~~~i~~hl~sLI~~LL~l 414 (415)
T PF12460_consen 385 SLETLKMILEEAPELISEHLSSLIPRLLKL 414 (415)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHhc
Confidence 566777778888899999988888776653
No 8
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=36.42 E-value=2.2e+02 Score=26.35 Aligned_cols=75 Identities=23% Similarity=0.348 Sum_probs=52.6
Q ss_pred HHHHHHHHHhHHHh-hhhHhhHHHHHHHHhhcCCchhhhHHHHHHHHHHHHhc-hhhhhcchhhhhhccccccccccCcc
Q psy9794 104 SFLAYLVRFYQDIL-NKHSQLLVDGVLNLLLLCPSEVTSMRKELLIAARHILQ-TDFRTNFVPHMSQLFEEDFQLGSGWT 181 (255)
Q Consensus 104 SFLaYvlR~~~~~i-~~~~~~i~~~ii~LL~~CP~e~~~~RKELLva~RHIls-Td~R~~F~p~id~LlDErvLiG~G~t 181 (255)
.|+.-+.+...+.- -.|...+....+++|.++| .+.|.+.|..++.++. .|.|+
T Consensus 168 dfl~~v~~~l~~~f~P~~~~~~l~~Ll~lL~n~~---~w~~~~~L~iL~~ll~~~d~~~--------------------- 223 (262)
T PF14225_consen 168 DFLSQVVSYLREAFFPDHEFQILTFLLGLLENGP---PWLRRKTLQILKVLLPHVDMRS--------------------- 223 (262)
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHHhccccCCC---------------------
Confidence 45555555555543 4566777888999999999 5899999999999886 46653
Q ss_pred cccchhhhHHHHHHHHHHHhhCCCCHH
Q psy9794 182 THESLRPLVYSTLADLVHHVRQLLPMS 208 (255)
Q Consensus 182 ~~EtLRpLAYS~lADliHhvR~~Ls~~ 208 (255)
|...-.+.-++++++.++-.+
T Consensus 224 ------~~~~dlispllrlL~t~~~~e 244 (262)
T PF14225_consen 224 ------PHGADLISPLLRLLQTDLWME 244 (262)
T ss_pred ------CcchHHHHHHHHHhCCccHHH
Confidence 233445566777777777654
No 9
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=34.68 E-value=2.9e+02 Score=23.58 Aligned_cols=139 Identities=10% Similarity=0.132 Sum_probs=68.0
Q ss_pred hHHHHHHHHHHHHHHh--HHHhhhhHhhHHHHHHHHhhcCCchhhhHHHHHHHHHHHHhchhhhhcchhhhhhccccccc
Q psy9794 98 AQIKTLSFLAYLVRFY--QDILNKHSQLLVDGVLNLLLLCPSEVTSMRKELLIAARHILQTDFRTNFVPHMSQLFEEDFQ 175 (255)
Q Consensus 98 AQVKtlSFLaYvlR~~--~~~i~~~~~~i~~~ii~LL~~CP~e~~~~RKELLva~RHIlsTd~R~~F~p~id~LlDErvL 175 (255)
.++.++--|.=++++. .+....+.+.+-+.+..+.....+.-+..-|+-+.....+. ..+++.|=|++|.++. .|
T Consensus 23 ~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~-~~l~~~~~~~~~~~l~--~L 99 (228)
T PF12348_consen 23 ERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLA-RQLGSHFEPYADILLP--PL 99 (228)
T ss_dssp HHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHH-HHHGGGGHHHHHHHHH--HH
T ss_pred HHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHH-HHHhHhHHHHHHHHHH--HH
Confidence 3455555555555555 33444444444422223333334444445555555554444 3456668888888885 55
Q ss_pred cccCcccccchhhhHHHHHHHHHHHhhCCCCHHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHhhhhhhh
Q psy9794 176 LGSGWTTHESLRPLVYSTLADLVHHVRQLLPMSDLIKAVHLFSKNIHDETLPTTIHTMSCKLLRNVVDFIH 246 (255)
Q Consensus 176 iG~G~t~~EtLRpLAYS~lADliHhvR~~Ls~~qi~~~v~~fs~~lhD~sL~~siQ~ms~kLLlnLve~I~ 246 (255)
++.--.+...+|--|..++..++.|+- . ...+. +.....-..+ -.+.+...++.++...++...
T Consensus 100 l~~~~~~~~~i~~~a~~~L~~i~~~~~--~-~~~~~--~~~l~~~~~~--Kn~~vR~~~~~~l~~~l~~~~ 163 (228)
T PF12348_consen 100 LKKLGDSKKFIREAANNALDAIIESCS--Y-SPKIL--LEILSQGLKS--KNPQVREECAEWLAIILEKWG 163 (228)
T ss_dssp HHGGG---HHHHHHHHHHHHHHHTTS---H---HHH--HHHHHHHTT---S-HHHHHHHHHHHHHHHTT--
T ss_pred HHHHccccHHHHHHHHHHHHHHHHHCC--c-HHHHH--HHHHHHHHhC--CCHHHHHHHHHHHHHHHHHcc
Confidence 555444567799999999999998765 0 11220 2222222222 336677777777777766654
No 10
>PF04352 ProQ: ProQ/FINO family; InterPro: IPR016103 This entry represents a structural domain consisting of six helices in an irregular non-globular array; it also contains two small beta-hairpins. This domain is found in the RNA-binding fertility inhibitor FinO that represses the conjugative transfer of F-like plasmids in Escherichia coli. FinO blocks the translation of TraJ, a positive activator of transcription of gene thereby protecting it from degradation, and catalyses FinP-TraJ mRNA hybridization. Interactions between these two RNAs are predicted to block the TraJ ribosomal binding site. FinO is largely helical, binds to its highest affinity binding site within FinP as a monomer, and contains two distinct RNA binding regions []. This entry also includes ProQ, which is required for full activation of the osmoprotectant transporter ProP in Escherichia coli [].; PDB: 3MW6_C 1DVO_A.
Probab=34.07 E-value=39 Score=27.35 Aligned_cols=34 Identities=21% Similarity=0.409 Sum_probs=28.7
Q ss_pred hhhhHHHHHHHHHHHhhCC--CCHHHHHHHHHHhhc
Q psy9794 186 LRPLVYSTLADLVHHVRQL--LPMSDLIKAVHLFSK 219 (255)
Q Consensus 186 LRpLAYS~lADliHhvR~~--Ls~~qi~~~v~~fs~ 219 (255)
.+||+....-||+-++... +|-.+|.+++..|++
T Consensus 27 ~~PLkiGI~~dl~~~~~~~~~~s~~~lr~al~~y~~ 62 (114)
T PF04352_consen 27 PKPLKIGIFEDLAARLPEDGLLSKKELRRALRAYTR 62 (114)
T ss_dssp C--B-TTHHHHHHHHHCCTT-S-HHHHHHHHHHHHC
T ss_pred CCCchhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHC
Confidence 8999999999999999987 999999999999997
No 11
>PF01017 STAT_alpha: STAT protein, all-alpha domain; InterPro: IPR013800 The STAT protein (Signal Transducers and Activators of Transcription) family contains transcription factors that are specifically activated to regulate gene transcription when cells encounter cytokines and growth factors, hence they act as signal transducers in the cytoplasm and transcription activators in the nucleus []. Binding of these factors to cell-surface receptors leads to receptor autophosphorylation at a tyrosine, the phosphotyrosine being recognised by the STAT SH2 domain, which mediates the recruitment of STAT proteins from the cytosol and their association with the activated receptor. The STAT proteins are then activated by phosphorylation via members of the JAK family of protein kinases, causing them to dimerise and translocated to the nucleus, where they bind to specific promoter sequences in target genes. In mammals, STATs comprise a family of seven structurally and functionally related proteins: Stat1, Stat2, Stat3, Stat4, Stat5a and Stat5b, Stat6. STAT proteins play a critical role in regulating innate and acquired host immune responses. Dysregulation of at least two STAT signalling cascades (i.e. Stat3 and Stat5) is associated with cellular transformation. Signalling through the JAK/STAT pathway is initiated when a cytokine binds to its corresponding receptor. This leads to conformational changes in the cytoplasmic portion of the receptor, initiating activation of receptor associated members of the JAK family of kinases. The JAKs, in turn, mediate phosphorylation at the specific receptor tyrosine residues, which then serve as docking sites for STATs and other signalling molecules. Once recruited to the receptor, STATs also become phosphorylated by JAKs, on a single tyrosine residue. Activated STATs dissociate from the receptor, dimerise, translocate to the nucleus and bind to members of the GAS (gamma activated site) family of enhancers. The seven STAT proteins identified in mammals range in size from 750 and 850 amino acids. The chromosomal distribution of these STATs, as well as the identification of STATs in more primitive eukaryotes, suggest that this family arose from a single primordial gene. STATs share structurally and functionally conserved domains including: an N-terminal domain that strengthens interactions between STAT dimers on adjacent DNA-binding sites; a coiled-coil STAT domain that is implicated in protein-protein interactions; a DNA-binding domain with an immunoglobulin-like fold similar to p53 tumour suppressor protein; an EF-hand-like linker domain connecting the DNA-binding and SH2 domains; an SH2 domain (IPR000980 from INTERPRO) that acts as a phosphorylation-dependent switch to control receptor recognition and DNA-binding; and a C-terminal transactivation domain []. The crystal structure of the N terminus of Stat4 reveals a dimer. The interface of this dimer is formed by a ring-shaped element consisting of five short helices. Several studies suggest that this N-terminal dimerisation promotes cooperativity of binding to tandem GAS elements and with the transcriptional coactivator CBP/p300. This entry represents the all-alpha helical domain, which consists of four long helices arranged in a bundle with a left-handed twist (coiled-coil), which in turn forms a right-handed superhelix.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0004871 signal transducer activity, 0006355 regulation of transcription, DNA-dependent, 0007165 signal transduction, 0005634 nucleus; PDB: 1YVL_A 1BF5_A 3CWG_B 1BG1_A 1Y1U_B.
Probab=31.85 E-value=3.2e+02 Score=23.65 Aligned_cols=95 Identities=28% Similarity=0.380 Sum_probs=60.4
Q ss_pred hhhhHHHHHHHHHHHHhchhhhhcchhhhhhcccccc--------ccccCcccccchhhh--HHHHHHHHHHHhhCCCCH
Q psy9794 138 EVTSMRKELLIAARHILQTDFRTNFVPHMSQLFEEDF--------QLGSGWTTHESLRPL--VYSTLADLVHHVRQLLPM 207 (255)
Q Consensus 138 e~~~~RKELLva~RHIlsTd~R~~F~p~id~LlDErv--------LiG~G~t~~EtLRpL--AYS~lADliHhvR~~Ls~ 207 (255)
.....|++++...+-.++.= =.-...++|+.+ +-|.|.....+|=++ .+..+||++-|+|.
T Consensus 72 ~L~~~R~~lv~~l~~~~~~~-----~~lq~~ll~~eL~~WKrrQqlA~iG~P~~~~LD~LQ~wfe~LAe~l~qlrq---- 142 (182)
T PF01017_consen 72 ELDQKRKELVSKLKETLNCL-----EQLQSQLLDEELIEWKRRQQLACIGAPFDSSLDQLQNWFESLAEILWQLRQ---- 142 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHTHHHHHHHHHHHHHTTSS----THHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHcCCCCChhhhHHHHHHHHHHHHHHHHHHH----
Confidence 45677888887777666421 011234556665 889999988888887 79999999999996
Q ss_pred HHHHHHHHHhhcccCCCC-ch---hHHHHHHHHHHHhhh
Q psy9794 208 SDLIKAVHLFSKNIHDET-LP---TTIHTMSCKLLRNVV 242 (255)
Q Consensus 208 ~qi~~~v~~fs~~lhD~s-L~---~siQ~ms~kLLlnLv 242 (255)
||.++-.+-.+.-++.. ++ +....-.-.|+-+||
T Consensus 143 -qlk~l~~l~~k~~~~~d~~~~~~~~L~~~v~~ll~~Lv 180 (182)
T PF01017_consen 143 -QLKKLEELQQKLTYENDPIPDQLPQLNERVTELLKNLV 180 (182)
T ss_dssp -HHHHHHHHHTTS--TT-THHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhhcCCCCCchhhhHHHHHHHHHHHHHHHh
Confidence 88888888888777762 33 234444455666665
No 12
>PRK15054 nitrate reductase 2 subunit delta; Provisional
Probab=31.84 E-value=1.2e+02 Score=28.03 Aligned_cols=110 Identities=15% Similarity=0.168 Sum_probs=61.5
Q ss_pred HHHHHHhhhhh----hHHhhHHHHHHHHHHhhcCCCCccccCChhhhHHHHHHHHHhHHHHHHHHHHHHHHhHHHhhhhH
Q psy9794 46 IIVLVYQLYKE----NVKKDLEEFIPIILKTVNLKPPIDFVTAPEIYKEIYVDFIGAQIKTLSFLAYLVRFYQDILNKHS 121 (255)
Q Consensus 46 ivv~l~Q~Yk~----~v~~~i~~fiPli~~~l~l~~~~q~~~~p~~n~~~y~Dfi~AQVKtlSFLaYvlR~~~~~i~~~~ 121 (255)
.+|=|-|.|++ ....++|+++|++.+|++..++.+. .+++..=. .-++.+-....+.=.+ -
T Consensus 83 AmvdL~~~Y~~~G~~~~~~ELPDyLPl~LEfla~~~~~~a-----------~~~L~~~~---~iLe~L~~rL~~~~Sp-Y 147 (231)
T PRK15054 83 AMVDLLAEYEKVGLQLDCRELPDYLPLYLEYLSVLPDDQA-----------KEGLLNVA---PILALLGGRLKQREAP-W 147 (231)
T ss_pred HHHHHHHHHHHcCCCCCCCcCcchHHHHHHHHhcCChHHH-----------HHHHHHHH---HHHHHHHHHHHHcCCC-h
Confidence 46677888886 4468999999999999998765321 11111111 1111111111121122 2
Q ss_pred hhHHHHHHHHhhcCCchhhhHHHHHHHHHHHHhchhhhhcchhhhhhccc-cccccccC
Q psy9794 122 QLLVDGVLNLLLLCPSEVTSMRKELLIAARHILQTDFRTNFVPHMSQLFE-EDFQLGSG 179 (255)
Q Consensus 122 ~~i~~~ii~LL~~CP~e~~~~RKELLva~RHIlsTd~R~~F~p~id~LlD-ErvLiG~G 179 (255)
..+.++++.+...|+.... .. ..++.+-|..=+--+|..-. |.|-.|.|
T Consensus 148 a~l~~all~l~~~~~~~~~-~~--------~~~~~~~~dd~~~alD~~weee~v~F~~~ 197 (231)
T PRK15054 148 YALFDALLQLAGSTLSSDS-VT--------KQVNSEERDDTRQALDAVWEEEQVKFIED 197 (231)
T ss_pred HHHHHHHHHHhCCCcchhh-hh--------hhcccccccCCHHHHHHHHhhcccccCCC
Confidence 4566788888888875422 22 12333334444557788877 56667654
No 13
>PF09184 PPP4R2: PPP4R2; InterPro: IPR015267 PPP4R2 (protein phosphatase 4 core regulatory subunit R2) is the regulatory subunit of the histone H2A phosphatase complex. It has been shown to confer resistance to the anticancer drug cisplatin in yeast [], and may confer resistance in higher eukaryotes.
Probab=31.03 E-value=1.5e+02 Score=27.94 Aligned_cols=90 Identities=18% Similarity=0.301 Sum_probs=61.1
Q ss_pred HHHHHHHHHHhchhhhhcchhhhhhccccccccccCcccccchhhhHHHHHHHHHHHhhC--------------CCCHHH
Q psy9794 144 KELLIAARHILQTDFRTNFVPHMSQLFEEDFQLGSGWTTHESLRPLVYSTLADLVHHVRQ--------------LLPMSD 209 (255)
Q Consensus 144 KELLva~RHIlsTd~R~~F~p~id~LlDErvLiG~G~t~~EtLRpLAYS~lADliHhvR~--------------~Ls~~q 209 (255)
.||+-++.++-.-.-+ .+.+.++.++.+-=-.|.-+-.+.-|++|-.-.+-.+++++.. .-.+++
T Consensus 3 ~~~~~~l~~f~~~k~~-~l~~~L~~il~~ia~tg~~~~~W~~lk~l~~~kl~~v~~e~~~~~p~~~~~~~~~~~~~~~~~ 81 (288)
T PF09184_consen 3 EELLDALENFMKIKSK-ELPPELEDILEHIAKTGETWYPWSLLKSLFRHKLEKVIDEFFESAPEESGPQNPNVEPEDYEE 81 (288)
T ss_pred HHHHHHHHHhcCCCcc-cHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHHHHHhcCccccCCCCCCcchhhHHH
Confidence 3566666666654433 5667777777776666777778888999999999988888882 123455
Q ss_pred HHHHHHHhhcccCCCCchhHHHHHHHH
Q psy9794 210 LIKAVHLFSKNIHDETLPTTIHTMSCK 236 (255)
Q Consensus 210 i~~~v~~fs~~lhD~sL~~siQ~ms~k 236 (255)
+.+.+.-.... ++. .|.+||-+|==
T Consensus 82 ~~~~~~~~~~~-f~~-~PfTiqRlcEl 106 (288)
T PF09184_consen 82 MKERILELLDS-FDE-PPFTIQRLCEL 106 (288)
T ss_pred HHHHHHHHHHh-cCC-CChhHHHHHHH
Confidence 65555444333 333 99999988743
No 14
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=28.55 E-value=2.4e+02 Score=20.63 Aligned_cols=69 Identities=19% Similarity=0.145 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhHHHhhhhH-hhHHHHHHHHhhcCCchhhhHHHHHHHHHHHHhchh-------hhhcchhhhhhccccc
Q psy9794 102 TLSFLAYLVRFYQDILNKHS-QLLVDGVLNLLLLCPSEVTSMRKELLIAARHILQTD-------FRTNFVPHMSQLFEED 173 (255)
Q Consensus 102 tlSFLaYvlR~~~~~i~~~~-~~i~~~ii~LL~~CP~e~~~~RKELLva~RHIlsTd-------~R~~F~p~id~LlDEr 173 (255)
++.-++.+..+..+...... ..+.+.++++|.+ +....|+.-+.+..++.... .+.+++|.+-.++++.
T Consensus 27 a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~~~l~~~ 103 (120)
T cd00020 27 AAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS---EDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSS 103 (120)
T ss_pred HHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhC---CCHHHHHHHHHHHHHHccCcHHHHHHHHHCCChHHHHHHHhcC
Confidence 34444444443333333322 2556666777765 34688889999999998653 3456788888877765
No 15
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=27.76 E-value=1.1e+02 Score=20.40 Aligned_cols=45 Identities=20% Similarity=0.078 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhHHHhhhhHhhHHHHHHHHhhcCCchhhhHHHHHHHHH
Q psy9794 103 LSFLAYLVRFYQDILNKHSQLLVDGVLNLLLLCPSEVTSMRKELLIAA 150 (255)
Q Consensus 103 lSFLaYvlR~~~~~i~~~~~~i~~~ii~LL~~CP~e~~~~RKELLva~ 150 (255)
..-|+.+.....+.+++|.+.+....+.+|+|-.+ ..|..=..|+
T Consensus 8 ~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~---~VR~~A~~aL 52 (55)
T PF13513_consen 8 AWALGRLAEGCPELLQPYLPELLPALIPLLQDDDD---SVRAAAAWAL 52 (55)
T ss_dssp HHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSH---HHHHHHHHHH
T ss_pred HHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCH---HHHHHHHHHH
Confidence 34445555677888999999999999999988443 4476555544
No 16
>KOG2300|consensus
Probab=27.23 E-value=79 Score=32.76 Aligned_cols=53 Identities=30% Similarity=0.350 Sum_probs=39.5
Q ss_pred ccchhhhHHHHHHHHHHHhhCCCCH--HHHHHHHHHhhcccCCCCchhHHHHHHHHHHHhhhhhh
Q psy9794 183 HESLRPLVYSTLADLVHHVRQLLPM--SDLIKAVHLFSKNIHDETLPTTIHTMSCKLLRNVVDFI 245 (255)
Q Consensus 183 ~EtLRpLAYS~lADliHhvR~~Ls~--~qi~~~v~~fs~~lhD~sL~~siQ~ms~kLLlnLve~I 245 (255)
.+-.+==|||+|||+=||.-..++. +-|.|+|.+=. ++=.-+|||++-|++--
T Consensus 83 fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq----------~~p~wsckllfQLaql~ 137 (629)
T KOG2300|consen 83 FYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQ----------SVPYWSCKLLFQLAQLH 137 (629)
T ss_pred HHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhc----------CCchhhHHHHHHHHHHH
Confidence 3345556999999999999876665 56888886433 33388999999998864
No 17
>COG2937 PlsB Glycerol-3-phosphate O-acyltransferase [Lipid metabolism]
Probab=25.86 E-value=8.9e+02 Score=26.39 Aligned_cols=140 Identities=19% Similarity=0.200 Sum_probs=80.2
Q ss_pred hhHHHHHHHhhhhhhHHhhHHHHHHHHHHhhcC----CCCccccC---ChhhhHHHHHHHHH----------hHHHHHHH
Q psy9794 43 LPLIIVLVYQLYKENVKKDLEEFIPIILKTVNL----KPPIDFVT---APEIYKEIYVDFIG----------AQIKTLSF 105 (255)
Q Consensus 43 ~Piivv~l~Q~Yk~~v~~~i~~fiPli~~~l~l----~~~~q~~~---~p~~n~~~y~Dfi~----------AQVKtlSF 105 (255)
.|=+|-++++.|++.-...+....--+..+|.- .-+.+..+ ..-++.-.-.|.+. +|+|.+-.
T Consensus 619 lpslva~~l~~~~~is~~~l~~~a~~lyp~Lk~Elfl~~s~~el~~~i~~~~~~~~rqdll~~~~~~~~~n~~~sr~l~l 698 (810)
T COG2937 619 LPSLVALALLHARHISRAALLAQAMRLYPLLKAELFLRWSADELADVIDEVAWEFVRQDLLKPEDDELIINMLQSRRLLL 698 (810)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhHHHHhhHhhccccHHHHHHHHHHHHHHHHHHhhcccCcchhhhhhhhhHHHHH
Confidence 466777788888775555555444444444422 11111000 00011122233333 56665555
Q ss_pred HHHHHHHhHHHhhhhHhhHHHHHHHHhhcCCchhhhHHHHH-----HHHHH-----HHhchhhhh--cchhhhhhccccc
Q psy9794 106 LAYLVRFYQDILNKHSQLLVDGVLNLLLLCPSEVTSMRKEL-----LIAAR-----HILQTDFRT--NFVPHMSQLFEED 173 (255)
Q Consensus 106 LaYvlR~~~~~i~~~~~~i~~~ii~LL~~CP~e~~~~RKEL-----Lva~R-----HIlsTd~R~--~F~p~id~LlDEr 173 (255)
++-.+| +.++-| ..++.+|.+|||+. -|.|| .+|=| -|=+.||.. .|-..+-.|-|++
T Consensus 699 ~~~~lr---~~lqrY-----~It~~lL~~~~p~~--~~aeLe~~~~~vaqrls~lhginapEffdk~lF~t~iq~l~d~~ 768 (810)
T COG2937 699 LAAGLR---EFLQRY-----YITADLLRAAPPDI--GRAELEKESLGVAQRLSVLHGINAPEFFDKALFSTAIQTLRDQG 768 (810)
T ss_pred HHHHHH---HHHHHH-----HHHHHHHHhCCCCc--CHHHHHHHHHHHHHHHHHHcccCCchhhhHHHHHHHHHHHHHhc
Confidence 555554 444555 57888999997663 23342 22322 233456644 3888899999999
Q ss_pred cccccCcccccchhhhHHH
Q psy9794 174 FQLGSGWTTHESLRPLVYS 192 (255)
Q Consensus 174 vLiG~G~t~~EtLRpLAYS 192 (255)
.+=|.|.+..+..|.++--
T Consensus 769 li~~ag~~~~~e~~~~~~~ 787 (810)
T COG2937 769 LIDDAGAADLAERREVFRD 787 (810)
T ss_pred ccccCCcccHHHHHHHHHH
Confidence 9999999999999966553
No 18
>PF14837 INTS5_N: Integrator complex subunit 5 N-terminus
Probab=25.45 E-value=94 Score=28.32 Aligned_cols=57 Identities=23% Similarity=0.204 Sum_probs=41.8
Q ss_pred HHHHHHH-hHHHhhhhHhhHHHHHHHHhhcCCchhhhHHHHHHHHHHHHhchhhhhcchhhh
Q psy9794 106 LAYLVRF-YQDILNKHSQLLVDGVLNLLLLCPSEVTSMRKELLIAARHILQTDFRTNFVPHM 166 (255)
Q Consensus 106 LaYvlR~-~~~~i~~~~~~i~~~ii~LL~~CP~e~~~~RKELLva~RHIlsTd~R~~F~p~i 166 (255)
|.+++|+ .+.......+.+.+..+.||+++| ++|--.+.-++.++....+..+.+.-
T Consensus 8 L~~fi~~~~~~~~~~~~~~lvk~al~lL~~lP----aaR~AVley~~~vf~eaV~~~~~~~E 65 (213)
T PF14837_consen 8 LKSFIRGVRPCYSNKSVEDLVKCALSLLRSLP----AARDAVLEYFGLVFDEAVHLYLSPKE 65 (213)
T ss_pred HHHHHhcCCcccccccHHHHHHHHHHHHHhCc----ccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5667777 333333356788999999999999 45878888888888777777776665
No 19
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=25.24 E-value=4.2e+02 Score=22.36 Aligned_cols=102 Identities=16% Similarity=0.212 Sum_probs=66.3
Q ss_pred HHHHHHHHhHHHhhhhHhhHHHHHHHHhhcCCchhhhHHHHHHHHHHHHhchhh---hhcc-hhhhhhccccccccccCc
Q psy9794 105 FLAYLVRFYQDILNKHSQLLVDGVLNLLLLCPSEVTSMRKELLIAARHILQTDF---RTNF-VPHMSQLFEEDFQLGSGW 180 (255)
Q Consensus 105 FLaYvlR~~~~~i~~~~~~i~~~ii~LL~~CP~e~~~~RKELLva~RHIlsTd~---R~~F-~p~id~LlDErvLiG~G~ 180 (255)
-++-+...|++.+.+|.+.+ ...|+|- ....||--+....|.+..|+ |..+ ...+-.|-||
T Consensus 11 ~l~DL~~r~~~~ve~~~~~l----~~~L~D~---~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~-------- 75 (178)
T PF12717_consen 11 ALGDLCIRYPNLVEPYLPNL----YKCLRDE---DPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDE-------- 75 (178)
T ss_pred HHHHHHHhCcHHHHhHHHHH----HHHHCCC---CHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCC--------
Confidence 33445666778777775544 4566655 36679999999999999876 4444 5555555555
Q ss_pred ccccchhhhHHHHHHHHHHHhhCCCCHHHHHHHHHHhhcccCC
Q psy9794 181 TTHESLRPLVYSTLADLVHHVRQLLPMSDLIKAVHLFSKNIHD 223 (255)
Q Consensus 181 t~~EtLRpLAYS~lADliHhvR~~Ls~~qi~~~v~~fs~~lhD 223 (255)
.+.+|-.|-..+.++...--...-.+.+..++..++..-.+
T Consensus 76 --~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~ 116 (178)
T PF12717_consen 76 --NPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEH 116 (178)
T ss_pred --CHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCcccc
Confidence 35677777777777776654555556666666666655433
No 20
>KOG1824|consensus
Probab=24.57 E-value=1.6e+02 Score=32.85 Aligned_cols=82 Identities=21% Similarity=0.252 Sum_probs=67.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhHHHhhhhHhhHHHHHHHHhhcCCchhhhHHHHHHHHHHHHhchhhhhcchhhhhh
Q psy9794 89 KEIYVDFIGAQIKTLSFLAYLVRFYQDILNKHSQLLVDGVLNLLLLCPSEVTSMRKELLIAARHILQTDFRTNFVPHMSQ 168 (255)
Q Consensus 89 ~~~y~Dfi~AQVKtlSFLaYvlR~~~~~i~~~~~~i~~~ii~LL~~CP~e~~~~RKELLva~RHIlsTd~R~~F~p~id~ 168 (255)
++.=.+=+-+-+++++.|.=+++.+++.+.+|.++++.||+.-|-|=.+. +..++|-|+-+...+.+.=-..|=||+..
T Consensus 442 ~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSss-s~~ki~~L~fl~~~L~s~~p~~fhp~~~~ 520 (1233)
T KOG1824|consen 442 KQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSS-SNLKIDALVFLYSALISHPPEVFHPHLSA 520 (1233)
T ss_pred HHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccch-HHHHHHHHHHHHHHHhcCChhhcccchhh
Confidence 33334444466778899999999999999999999999999999887644 88999999999999998877888888877
Q ss_pred ccc
Q psy9794 169 LFE 171 (255)
Q Consensus 169 LlD 171 (255)
|.-
T Consensus 521 Ls~ 523 (1233)
T KOG1824|consen 521 LSP 523 (1233)
T ss_pred hhh
Confidence 653
No 21
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=23.48 E-value=1.7e+02 Score=26.88 Aligned_cols=51 Identities=16% Similarity=0.354 Sum_probs=43.9
Q ss_pred cccCccccc-chhhhHHHHHHHHHHHhh-CCCCHHHHHHHHHHhhcccCCCCc
Q psy9794 176 LGSGWTTHE-SLRPLVYSTLADLVHHVR-QLLPMSDLIKAVHLFSKNIHDETL 226 (255)
Q Consensus 176 iG~G~t~~E-tLRpLAYS~lADliHhvR-~~Ls~~qi~~~v~~fs~~lhD~sL 226 (255)
+|...|+-| ..|--|-..|++.+..+- +.|+.+|+.-.+..|+..+-|...
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~~ 56 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHAC 56 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHhh
Confidence 577777765 789999999999999998 559999999999999999977643
No 22
>KOG2305|consensus
Probab=22.64 E-value=92 Score=29.54 Aligned_cols=52 Identities=23% Similarity=0.395 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhch-----hhhhcchhhhhhccccccccccCcccccchhhhHHHHHHHHHHH
Q psy9794 144 KELLIAARHILQT-----DFRTNFVPHMSQLFEEDFQLGSGWTTHESLRPLVYSTLADLVHH 200 (255)
Q Consensus 144 KELLva~RHIlsT-----d~R~~F~p~id~LlDErvLiG~G~t~~EtLRpLAYS~lADliHh 200 (255)
+|+.-..=||=.. ++|+.|+..+|.+.|+++++.++-++ +-|.-|| |+|+|-
T Consensus 79 ~E~vk~Ai~iQEcvpE~L~lkk~ly~qlD~i~d~~tIlaSSTSt---~mpS~~s--~gL~~k 135 (313)
T KOG2305|consen 79 NELVKGAIHIQECVPEDLNLKKQLYKQLDEIADPTTILASSTST---FMPSKFS--AGLINK 135 (313)
T ss_pred HHHHhhhhhHHhhchHhhHHHHHHHHHHHHhcCCceEEeccccc---cChHHHh--hhhhhh
Confidence 4555555555443 78899999999999999999876554 5565554 677764
No 23
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=20.82 E-value=2.4e+02 Score=23.91 Aligned_cols=78 Identities=23% Similarity=0.344 Sum_probs=0.0
Q ss_pred hHhhHHHHHHHHhhcCCchhhhHHHHHHHHHHHHhchhhhhcchhhhhhccccccccccCcccccchhhhHHHHHHHHHH
Q psy9794 120 HSQLLVDGVLNLLLLCPSEVTSMRKELLIAARHILQTDFRTNFVPHMSQLFEEDFQLGSGWTTHESLRPLVYSTLADLVH 199 (255)
Q Consensus 120 ~~~~i~~~ii~LL~~CP~e~~~~RKELLva~RHIlsTd~R~~F~p~id~LlDErvLiG~G~t~~EtLRpLAYS~lADliH 199 (255)
|......+.++.|+| +..++-+...+.|.-+|+.+ ...+-+||++..+ -.++..=++|.+++|..-+..|++||.
T Consensus 83 y~~vvi~~L~~iL~D--~sLs~~h~~vv~ai~~If~~-l~~~cv~~L~~vi--P~~l~~i~~~~~~~~e~~~~qL~~lv~ 157 (160)
T PF11865_consen 83 YPTVVINALMRILRD--PSLSSHHTAVVQAIMYIFKS-LGLKCVPYLPQVI--PIFLRVIRTCPDSLREFYFQQLADLVS 157 (160)
T ss_pred HHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHHh-cCcCchhHHHHHh--HHHHHHHHhCCHHHHHHHHHHHHHHHH
Q ss_pred Hhh
Q psy9794 200 HVR 202 (255)
Q Consensus 200 hvR 202 (255)
=||
T Consensus 158 ivk 160 (160)
T PF11865_consen 158 IVK 160 (160)
T ss_pred HhC
No 24
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=20.74 E-value=5.2e+02 Score=21.79 Aligned_cols=91 Identities=24% Similarity=0.263 Sum_probs=56.4
Q ss_pred hhHHHHHHHhhhhhhHHhhHHHHHHHHHHhhcCCCCccccCChhhhHHHHHHHHHhHHHHHHHHHHHHHHhHHH----hh
Q psy9794 43 LPLIIVLVYQLYKENVKKDLEEFIPIILKTVNLKPPIDFVTAPEIYKEIYVDFIGAQIKTLSFLAYLVRFYQDI----LN 118 (255)
Q Consensus 43 ~Piivv~l~Q~Yk~~v~~~i~~fiPli~~~l~l~~~~q~~~~p~~n~~~y~Dfi~AQVKtlSFLaYvlR~~~~~----i~ 118 (255)
+=++-+..-|.=.+.+..+-..++..++..+.-+.|+. .+.+-+.+++.+--..++|++. .-
T Consensus 46 ~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~--------------~~~~ai~~L~~l~~~~~~~p~l~Rei~t 111 (165)
T PF08167_consen 46 LCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPS--------------VLEAAIITLTRLFDLIRGKPTLTREIAT 111 (165)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHH--------------HHHHHHHHHHHHHHHhcCCCchHHHHhh
Confidence 33444444443134455556778888888885532211 2335677888887778888754 46
Q ss_pred hhHhhHHHHHHHHhh--cCCchhhhHHHHHH
Q psy9794 119 KHSQLLVDGVLNLLL--LCPSEVTSMRKELL 147 (255)
Q Consensus 119 ~~~~~i~~~ii~LL~--~CP~e~~~~RKELL 147 (255)
|+.+.+.+..+++++ .||.++...=++++
T Consensus 112 p~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll 142 (165)
T PF08167_consen 112 PNLPKFIQSLLQLLQDSSCPETALDALATLL 142 (165)
T ss_pred ccHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 677888889999999 77755444433333
No 25
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=20.41 E-value=7.2e+02 Score=23.35 Aligned_cols=133 Identities=16% Similarity=0.208 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHhHHHhhhhHhhHHHHHHHH----h----hcCCchhhhHHHHHHHHHHHHhchhhhhcc--hhhhhhccc
Q psy9794 102 TLSFLAYLVRFYQDILNKHSQLLVDGVLNL----L----LLCPSEVTSMRKELLIAARHILQTDFRTNF--VPHMSQLFE 171 (255)
Q Consensus 102 tlSFLaYvlR~~~~~i~~~~~~i~~~ii~L----L----~~CP~e~~~~RKELLva~RHIlsTd~R~~F--~p~id~LlD 171 (255)
.|+.++-+++...+.+.++.+.|-+.++.. . .+.| ..|++..--+|.+...-|..-+ -|-.=+++=
T Consensus 92 vL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yP----e~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~i 167 (319)
T PF08767_consen 92 VLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYP----EHRVNFFKLLRAINEHCFPALLQLPPEQFKLVI 167 (319)
T ss_dssp HHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSH----HHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhCh----HHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHH
Confidence 489999999888887777777666655544 2 2344 4578888888888876553321 111112233
Q ss_pred cccccccCcccccchhhhHHHHHHHHHHHhhCCCCHH------------HHHHHHHHhhcccCCCC--chhHHHHHHHHH
Q psy9794 172 EDFQLGSGWTTHESLRPLVYSTLADLVHHVRQLLPMS------------DLIKAVHLFSKNIHDET--LPTTIHTMSCKL 237 (255)
Q Consensus 172 ErvLiG~G~t~~EtLRpLAYS~lADliHhvR~~Ls~~------------qi~~~v~~fs~~lhD~s--L~~siQ~ms~kL 237 (255)
+-++.|-+.+.+| .--.+..++.|++.++.. .+.+ -+..+..+ +.|+. -....|++...-
T Consensus 168 dsi~wg~kh~~~~-I~~~~L~~l~~ll~~~~~-~~~~~~~~F~~~y~~~il~~if~v----ltD~~Hk~gf~~q~~iL~~ 241 (319)
T PF08767_consen 168 DSIVWGFKHTNRE-ISETGLNILLELLNNVSK-TNPEFANQFYQQYYLDILQDIFSV----LTDSDHKSGFKLQSQILSN 241 (319)
T ss_dssp HHHHHHHTSSSHH-HHHHHHHHHHHHHHHHHH--SHHHHHHHHHHHHHHHHHHHHHH----HHSTT-GGGHHHHHHHHHH
T ss_pred HHHHHHhCCCcHH-HHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHH----HHCcccHHHHHHHHHHHHH
Confidence 5667777777655 667788899999999888 2221 12222222 44544 456667777777
Q ss_pred HHhhhhh
Q psy9794 238 LRNVVDF 244 (255)
Q Consensus 238 LlnLve~ 244 (255)
|+.++|.
T Consensus 242 Lf~~ve~ 248 (319)
T PF08767_consen 242 LFRLVES 248 (319)
T ss_dssp HHHHHHT
T ss_pred HHHHHHc
Confidence 7777765
Done!