Query psy9794
Match_columns 255
No_of_seqs 109 out of 139
Neff 4.7
Searched_HMMs 29240
Date Fri Aug 16 19:54:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9794.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9794hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qgr_A Protein (importin beta 96.3 0.045 1.5E-06 53.0 12.8 142 99-244 581-723 (876)
2 2bpt_A Importin beta-1 subunit 95.6 0.36 1.2E-05 46.6 15.6 136 97-238 571-706 (861)
3 4fdd_A Transportin-1; heat rep 91.8 6.7 0.00023 38.6 16.7 134 99-242 603-741 (852)
4 1qgr_A Protein (importin beta 91.6 9.2 0.00032 36.8 17.2 141 102-245 670-829 (876)
5 2bpt_A Importin beta-1 subunit 91.4 11 0.00036 36.3 17.7 165 58-245 591-765 (861)
6 1u6g_C TIP120 protein, CAND1; 87.1 9.2 0.00031 39.3 14.0 139 102-245 454-600 (1230)
7 4fdd_A Transportin-1; heat rep 85.0 21 0.00072 35.0 14.9 202 37-245 456-701 (852)
8 4atg_A TAF6; transcription, TF 64.7 66 0.0023 27.4 11.9 105 92-241 45-160 (196)
9 1ibr_B P95, importin beta-1 su 59.4 66 0.0023 28.0 10.0 120 116-247 314-441 (462)
10 1u6g_C TIP120 protein, CAND1; 54.8 1.9E+02 0.0065 29.5 15.4 107 102-215 589-695 (1230)
11 1wa5_B Importin alpha subunit; 53.8 86 0.0029 28.7 10.2 108 122-243 172-286 (530)
12 2x19_B Importin-13; nuclear tr 51.6 1.9E+02 0.0064 28.5 14.2 172 56-245 384-558 (963)
13 2qk2_A LP04448P; mini spindles 46.1 1.2E+02 0.0041 24.7 12.8 131 101-246 76-208 (242)
14 4db8_A Armadillo-repeat protei 41.4 75 0.0026 25.4 6.9 142 64-242 54-208 (252)
15 4db8_A Armadillo-repeat protei 40.4 1.1E+02 0.0036 24.5 7.7 103 122-243 137-251 (252)
16 1b3u_A Protein (protein phosph 38.0 2.2E+02 0.0076 25.5 12.0 107 122-245 440-550 (588)
17 2jdq_A Importin alpha-1 subuni 37.9 2E+02 0.0068 24.9 9.8 133 98-243 81-221 (450)
18 2x1g_F Cadmus; transport prote 37.7 1.8E+02 0.0063 28.8 10.3 82 115-203 683-764 (971)
19 4hxt_A De novo protein OR329; 33.2 1.7E+02 0.0059 22.8 8.5 127 98-243 18-157 (252)
20 2x19_B Importin-13; nuclear tr 31.4 94 0.0032 30.7 7.0 88 107-201 510-601 (963)
21 2qk1_A Protein STU2; STU2P, XM 30.6 1.7E+02 0.0059 24.6 7.8 69 98-169 160-234 (249)
22 1wa5_C Importin alpha RE-expor 29.8 4.3E+02 0.015 26.3 16.8 148 55-205 222-396 (960)
23 1v32_A AT5G08430, hypothetical 29.7 63 0.0022 24.8 4.3 34 192-225 18-57 (101)
24 4db6_A Armadillo repeat protei 28.8 2E+02 0.0068 22.1 8.3 127 98-243 28-167 (210)
25 2qk2_A LP04448P; mini spindles 23.4 2.9E+02 0.01 22.2 8.8 118 48-169 82-219 (242)
26 4fqn_A Malcavernin; helical do 22.7 32 0.0011 26.8 1.4 56 110-169 34-91 (98)
27 1ibr_B P95, importin beta-1 su 22.6 3.7E+02 0.013 23.1 13.8 114 121-245 88-205 (462)
28 2x1g_F Cadmus; transport prote 22.4 2.9E+02 0.01 27.3 8.7 57 102-158 751-817 (971)
29 2jdq_A Importin alpha-1 subuni 22.0 3.8E+02 0.013 23.0 10.3 104 123-244 276-391 (450)
30 2hxj_A Hypothetical protein; A 21.5 37 0.0013 28.1 1.6 34 186-220 44-77 (144)
31 4fu3_A Regulation of nuclear P 21.0 88 0.003 23.9 3.8 51 119-172 35-91 (135)
No 1
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=96.27 E-value=0.045 Score=53.03 Aligned_cols=142 Identities=11% Similarity=0.137 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHHhH-HHhhhhHhhHHHHHHHHhhcCCchhhhHHHHHHHHHHHHhchhhhhcchhhhhhccccccccc
Q psy9794 99 QIKTLSFLAYLVRFYQ-DILNKHSQLLVDGVLNLLLLCPSEVTSMRKELLIAARHILQTDFRTNFVPHMSQLFEEDFQLG 177 (255)
Q Consensus 99 QVKtlSFLaYvlR~~~-~~i~~~~~~i~~~ii~LL~~CP~e~~~~RKELLva~RHIlsTd~R~~F~p~id~LlDErvLiG 177 (255)
|..++..+..+.++.. +.+.+|.+.+...++++|++.... ...|.+.+.+...+... ....|.||++.++. .++-+
T Consensus 581 ~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~-~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~~-~l~~~ 657 (876)
T 1qgr_A 581 QSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGS-GGVQEDALMAVSTLVEV-LGGEFLKYMEAFKP-FLGIG 657 (876)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----C-CHHHHHHHHHHHHHHHH-HGGGGGGGHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCC-CCccHHHHHHHHHHHHH-HHhhHHHHHHHHHH-HHHHH
Confidence 4556778888888887 888999999999999999876311 34688888888888764 56778899888772 22222
Q ss_pred cCcccccchhhhHHHHHHHHHHHhhCCCCHHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHhhhhh
Q psy9794 178 SGWTTHESLRPLVYSTLADLVHHVRQLLPMSDLIKAVHLFSKNIHDETLPTTIHTMSCKLLRNVVDF 244 (255)
Q Consensus 178 ~G~t~~EtLRpLAYS~lADliHhvR~~Ls~~qi~~~v~~fs~~lhD~sL~~siQ~ms~kLLlnLve~ 244 (255)
-+....+.+|-.|..++.+++..+..++. ..+..++....+.+.++.....++..++..+-+++..
T Consensus 658 l~~~~~~~vr~~a~~~l~~l~~~~~~~~~-~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~ 723 (876)
T 1qgr_A 658 LKNYAEYQVCLAAVGLVGDLCRALQSNII-PFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALA 723 (876)
T ss_dssp HHHCTTHHHHHHHHHHHHHHHHHHGGGGH-HHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHH
T ss_pred HcCcchHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHH
Confidence 22222467899999999999999887665 2355566666666665433344555565555555443
No 2
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=95.57 E-value=0.36 Score=46.59 Aligned_cols=136 Identities=10% Similarity=0.104 Sum_probs=85.2
Q ss_pred HhHHHHHHHHHHHHHHhHHHhhhhHhhHHHHHHHHhhcCCchhhhHHHHHHHHHHHHhchhhhhcchhhhhhcccccccc
Q psy9794 97 GAQIKTLSFLAYLVRFYQDILNKHSQLLVDGVLNLLLLCPSEVTSMRKELLIAARHILQTDFRTNFVPHMSQLFEEDFQL 176 (255)
Q Consensus 97 ~AQVKtlSFLaYvlR~~~~~i~~~~~~i~~~ii~LL~~CP~e~~~~RKELLva~RHIlsTd~R~~F~p~id~LlDErvLi 176 (255)
..|..++.-+..+.++..+.+.+|.+.+-..++++|++..++ ..|++.+.+...+.. .....|.||++.++.- ++-
T Consensus 571 ~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~--~v~~~~~~~l~~l~~-~~~~~~~~~l~~i~~~-l~~ 646 (861)
T 2bpt_A 571 ELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSA--FIEDDVFYAISALAA-SLGKGFEKYLETFSPY-LLK 646 (861)
T ss_dssp HHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGG--GTHHHHHHHHHHHHH-HHGGGGHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCC--cHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHH-HHH
Confidence 345567777888888888888999999999999999987643 678888887776654 2345566666665431 100
Q ss_pred ccCcccccchhhhHHHHHHHHHHHhhCCCCHHHHHHHHHHhhcccCCCCchhHHHHHHHHHH
Q psy9794 177 GSGWTTHESLRPLVYSTLADLVHHVRQLLPMSDLIKAVHLFSKNIHDETLPTTIHTMSCKLL 238 (255)
Q Consensus 177 G~G~t~~EtLRpLAYS~lADliHhvR~~Ls~~qi~~~v~~fs~~lhD~sL~~siQ~ms~kLL 238 (255)
+- .......|--|...+++++..+..++. ..+..++....+++.|+.....+...++..+
T Consensus 647 ~l-~~~~~~vr~~a~~~l~~l~~~~~~~~~-~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l 706 (861)
T 2bpt_A 647 AL-NQVDSPVSITAVGFIADISNSLEEDFR-RYSDAMMNVLAQMISNPNARRELKPAVLSVF 706 (861)
T ss_dssp HH-HCTTSHHHHHHHHHHHHHHHHTGGGGH-HHHHHHHHHHHHHHHCTTCCTTHHHHHHHHH
T ss_pred Hh-ccccHHHHHHHHHHHHHHHHHhchhcc-chHHHHHHHHHHHhCCccccHhhhHHHHHHH
Confidence 00 012234777788888888888775443 3344445455555655543334444444443
No 3
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=91.82 E-value=6.7 Score=38.58 Aligned_cols=134 Identities=8% Similarity=0.078 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHHhHHHhhhhH--hhHHHHHHHHhhcCCchhhhHHHHHHHHHHHHhchhhhhcchhhhhhccc---cc
Q psy9794 99 QIKTLSFLAYLVRFYQDILNKHS--QLLVDGVLNLLLLCPSEVTSMRKELLIAARHILQTDFRTNFVPHMSQLFE---ED 173 (255)
Q Consensus 99 QVKtlSFLaYvlR~~~~~i~~~~--~~i~~~ii~LL~~CP~e~~~~RKELLva~RHIlsTd~R~~F~p~id~LlD---Er 173 (255)
++.++..+.-+.++..+.+.+|. +.+...++.+|++. ....|++-..+..-+.. -+...|.||++.++. +.
T Consensus 603 ~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~---~~~vr~~a~~~l~~l~~-~~~~~~~~~l~~~lp~l~~~ 678 (852)
T 4fdd_A 603 MIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDK---MPEVRQSSFALLGDLTK-ACFQHVKPCIADFMPILGTN 678 (852)
T ss_dssp HHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCS---SHHHHHHHHHHHHHHHH-HCGGGTGGGHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCC---ChhHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHH
Confidence 56677778888888888888885 67777777777553 36689888888877653 344567777776653 11
Q ss_pred cccccCcccccchhhhHHHHHHHHHHHhhCCCCHHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHhhh
Q psy9794 174 FQLGSGWTTHESLRPLVYSTLADLVHHVRQLLPMSDLIKAVHLFSKNIHDETLPTTIHTMSCKLLRNVV 242 (255)
Q Consensus 174 vLiG~G~t~~EtLRpLAYS~lADliHhvR~~Ls~~qi~~~v~~fs~~lhD~sL~~siQ~ms~kLLlnLv 242 (255)
+ +.+ .. ..|--|--.+.++..++..++. .-+..++....+.+.++..+.+++-.++.++-.|.
T Consensus 679 l--~~~--~~-~v~~~a~~alg~i~~~~~~~~~-p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~ 741 (852)
T 4fdd_A 679 L--NPE--FI-SVCNNATWAIGEISIQMGIEMQ-PYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLG 741 (852)
T ss_dssp C--CTT--SH-HHHHHHHHHHHHHHHHHGGGGG-GGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHH
T ss_pred c--Ccc--ch-HHHHHHHHHHHHHHHHhhHhHH-HHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHH
Confidence 1 221 12 3455566668999999977655 34566777777777788888888866665555443
No 4
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=91.65 E-value=9.2 Score=36.82 Aligned_cols=141 Identities=12% Similarity=0.114 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHhHHHhhhhHhhHHHHHHHHhhcCCchhhhHHHHHHHHHHHHhchhhhhcchhhhhhccccccccccCcc
Q psy9794 102 TLSFLAYLVRFYQDILNKHSQLLVDGVLNLLLLCPSEVTSMRKELLIAARHILQTDFRTNFVPHMSQLFEEDFQLGSGWT 181 (255)
Q Consensus 102 tlSFLaYvlR~~~~~i~~~~~~i~~~ii~LL~~CP~e~~~~RKELLva~RHIlsTd~R~~F~p~id~LlDErvLiG~G~t 181 (255)
++..+..+.+...+.+.+|.+.+-..+++.|.+ +......|...+.+.-.+... +...|.||++.++.- ++-+-+..
T Consensus 670 a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~-~~~~~~~~~~~~~~l~~i~~~-~g~~~~~~l~~~~~~-l~~~~~~~ 746 (876)
T 1qgr_A 670 AVGLVGDLCRALQSNIIPFCDEVMQLLLENLGN-ENVHRSVKPQILSVFGDIALA-IGGEFKKYLEVVLNT-LQQASQAQ 746 (876)
T ss_dssp HHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTC-TTSCGGGHHHHHHHHHHHHHH-HGGGGGGGHHHHHHH-HHHHHTCC
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCC-ccccHHhhHHHHHHHHHHHHH-hchhHHHHHHHHHHH-HHHHHhcc
Confidence 455677777887788899999999999999875 212245888888888777641 112344555554432 11111101
Q ss_pred c---c-------cchhhhHHHHHHHHHHHhhCCC---------CHHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHhhh
Q psy9794 182 T---H-------ESLRPLVYSTLADLVHHVRQLL---------PMSDLIKAVHLFSKNIHDETLPTTIHTMSCKLLRNVV 242 (255)
Q Consensus 182 ~---~-------EtLRpLAYS~lADliHhvR~~L---------s~~qi~~~v~~fs~~lhD~sL~~siQ~ms~kLLlnLv 242 (255)
. - ..+|--+...++.++..+.... -..-+..++....+..-|+.....++..+++.|-.|+
T Consensus 747 ~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~ 826 (876)
T 1qgr_A 747 VDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLC 826 (876)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 0 1 1688888888888888877531 1122333333333333454446789999999988888
Q ss_pred hhh
Q psy9794 243 DFI 245 (255)
Q Consensus 243 e~I 245 (255)
+.+
T Consensus 827 ~~~ 829 (876)
T 1qgr_A 827 TAF 829 (876)
T ss_dssp HHH
T ss_pred HHh
Confidence 776
No 5
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=91.36 E-value=11 Score=36.32 Aligned_cols=165 Identities=10% Similarity=0.062 Sum_probs=98.3
Q ss_pred HHhhHHHHHHHHHHhhcCCCCccccCChhhhHHHHHHHHHhHHHHHHHHHHHHHHhHHHhhhhHhhHHHHHHHHhhcCCc
Q psy9794 58 VKKDLEEFIPIILKTVNLKPPIDFVTAPEIYKEIYVDFIGAQIKTLSFLAYLVRFYQDILNKHSQLLVDGVLNLLLLCPS 137 (255)
Q Consensus 58 v~~~i~~fiPli~~~l~l~~~~q~~~~p~~n~~~y~Dfi~AQVKtlSFLaYvlR~~~~~i~~~~~~i~~~ii~LL~~CP~ 137 (255)
+.+.++.++|.++..++-..+ | ..+..++..++.+.+...+.+.+|.+.+...+++.|.+-
T Consensus 591 ~~~~~~~l~~~l~~~l~~~~~---------------~--~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~-- 651 (861)
T 2bpt_A 591 VEPVADMLMGLFFRLLEKKDS---------------A--FIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQV-- 651 (861)
T ss_dssp TGGGHHHHHHHHHHHHHSTTG---------------G--GTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCT--
T ss_pred hHHHHHHHHHHHHHHHccCCC---------------C--cHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccc--
Confidence 335566666666666643211 1 123446667777888888888899999999999999542
Q ss_pred hhhhHHHHHHHHHHHHhchhhhhcchhhhhhcccccc-ccccCcccccchhhhHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy9794 138 EVTSMRKELLIAARHILQTDFRTNFVPHMSQLFEEDF-QLGSGWTTHESLRPLVYSTLADLVHHVRQLLPMSDLIKAVHL 216 (255)
Q Consensus 138 e~~~~RKELLva~RHIlsTd~R~~F~p~id~LlDErv-LiG~G~t~~EtLRpLAYS~lADliHhvR~~Ls~~qi~~~v~~ 216 (255)
....|+.-+.++-.+.. .....|.||++.+++-=+ .+++. ......|+-|...++++++++..++.. -+..++..
T Consensus 652 -~~~vr~~a~~~l~~l~~-~~~~~~~~~~~~l~~~l~~~l~~~-~~~~~vr~~~~~~l~~l~~~~~~~~~~-~l~~~l~~ 727 (861)
T 2bpt_A 652 -DSPVSITAVGFIADISN-SLEEDFRRYSDAMMNVLAQMISNP-NARRELKPAVLSVFGDIASNIGADFIP-YLNDIMAL 727 (861)
T ss_dssp -TSHHHHHHHHHHHHHHH-HTGGGGHHHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHHHHHHGGGGHH-HHHHHHHH
T ss_pred -cHHHHHHHHHHHHHHHH-HhchhccchHHHHHHHHHHHhCCc-cccHhhhHHHHHHHHHHHHHhhhhHHH-HHHHHHHH
Confidence 23477776666655543 233567777777664210 11111 122469999999999999999877642 23333333
Q ss_pred hhcccCCCC---------chhHHHHHHHHHHHhhhhhh
Q psy9794 217 FSKNIHDET---------LPTTIHTMSCKLLRNVVDFI 245 (255)
Q Consensus 217 fs~~lhD~s---------L~~siQ~ms~kLLlnLve~I 245 (255)
..+.+.... ....++..+++.+-.+++.+
T Consensus 728 l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l 765 (861)
T 2bpt_A 728 CVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGL 765 (861)
T ss_dssp HHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333332111 22456666666666665554
No 6
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=87.14 E-value=9.2 Score=39.29 Aligned_cols=139 Identities=16% Similarity=0.182 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHhHHHhhhhHhhHHHHHHHHhhcCCchhhhHHHHHHHHHHHHhchhhhhcchhhhhhcccccc-ccccCc
Q psy9794 102 TLSFLAYLVRFYQDILNKHSQLLVDGVLNLLLLCPSEVTSMRKELLIAARHILQTDFRTNFVPHMSQLFEEDF-QLGSGW 180 (255)
Q Consensus 102 tlSFLaYvlR~~~~~i~~~~~~i~~~ii~LL~~CP~e~~~~RKELLva~RHIlsTd~R~~F~p~id~LlDErv-LiG~G~ 180 (255)
++.-++.++++..+.+.+|.+.+...++.+|++--+ ....|-+.+-+.-.++.+-=...|.||++.++.-=+ .+++.
T Consensus 454 ~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~-~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~- 531 (1230)
T 1u6g_C 454 CFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSS-SSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDP- 531 (1230)
T ss_dssp HHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSS-CHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCS-
T ss_pred HHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCC-cchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHccc-
Confidence 455566666777777889999999999999987533 346788888888887653222345566655543211 11221
Q ss_pred ccccchhhhHHHHHHHHHHHhhC-------CCCHHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHhhhhhh
Q psy9794 181 TTHESLRPLVYSTLADLVHHVRQ-------LLPMSDLIKAVHLFSKNIHDETLPTTIHTMSCKLLRNVVDFI 245 (255)
Q Consensus 181 t~~EtLRpLAYS~lADliHhvR~-------~Ls~~qi~~~v~~fs~~lhD~sL~~siQ~ms~kLLlnLve~I 245 (255)
.-..|--|..++++++.+++. .+. .-+...+......+.+..-...++..+++.+-.|++..
T Consensus 532 --~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~-~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~ 600 (1230)
T 1u6g_C 532 --FYKITSEALLVTQQLVKVIRPLDQPSSFDAT-PYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNL 600 (1230)
T ss_dssp --SHHHHHHHHHHHHHHHHHHCCSSSCCCCCCH-HHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHT
T ss_pred --chHHHHHHHHHHHHHHHHhcCcccccccchH-HHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Confidence 113455688899999999886 332 23344444444555222233467777777776666654
No 7
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=84.99 E-value=21 Score=35.03 Aligned_cols=202 Identities=9% Similarity=0.038 Sum_probs=110.0
Q ss_pred hHhhhhhhHHHHHHHhhhhhhHHhhHHHHHHHHHHhhcCCCCccccC------------Chhh-hHHHHHHHHHhHH---
Q psy9794 37 LKSMQELPLIIVLVYQLYKENVKKDLEEFIPIILKTVNLKPPIDFVT------------APEI-YKEIYVDFIGAQI--- 100 (255)
Q Consensus 37 fKVL~E~Piivv~l~Q~Yk~~v~~~i~~fiPli~~~l~l~~~~q~~~------------~p~~-n~~~y~Dfi~AQV--- 100 (255)
.+|-..+--.+..+-+.....+.++++.++|.++..++-........ .+.+ +.+.+..++-.=.
T Consensus 456 ~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~ 535 (852)
T 4fdd_A 456 KRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKW 535 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHH
Confidence 34445555555555555555566777788887777774221100000 0011 1111222221111
Q ss_pred -----------HHHHHHHHHHHHhHHHhhhhHhhHHHHHHHHhhcCCc----------h----hhhHHHHHHHHHHHHhc
Q psy9794 101 -----------KTLSFLAYLVRFYQDILNKHSQLLVDGVLNLLLLCPS----------E----VTSMRKELLIAARHILQ 155 (255)
Q Consensus 101 -----------KtlSFLaYvlR~~~~~i~~~~~~i~~~ii~LL~~CP~----------e----~~~~RKELLva~RHIls 155 (255)
.++.-++++.+...+.+.+|.+.+-..+++++++|.. . -...|.-.+-++..+..
T Consensus 536 ~~l~d~~~~~~~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~ 615 (852)
T 4fdd_A 536 NMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAE 615 (852)
T ss_dssp HHSCTTCTTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHH
T ss_pred HhcccccHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHH
Confidence 1455666777777788889999999999999988721 0 12234433344444432
Q ss_pred hhhhhcchhhh--hhccccccccccCcc-cccchhhhHHHHHHHHHHHhhCCCCHHHHHHHHHHhhcccCCCCchhHHHH
Q psy9794 156 TDFRTNFVPHM--SQLFEEDFQLGSGWT-THESLRPLVYSTLADLVHHVRQLLPMSDLIKAVHLFSKNIHDETLPTTIHT 232 (255)
Q Consensus 156 Td~R~~F~p~i--d~LlDErvLiG~G~t-~~EtLRpLAYS~lADliHhvR~~Ls~~qi~~~v~~fs~~lhD~sL~~siQ~ 232 (255)
-+...|.|++ +.+++ +++ ..+. .....|--|+.++.|+..++..++.. -+..++-...+++-++ .+++..
T Consensus 616 -~l~~~~~~~~~~~~~~~--~l~-~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~-~l~~~lp~l~~~l~~~--~~~v~~ 688 (852)
T 4fdd_A 616 -GLGGNIEQLVARSNILT--LMY-QCMQDKMPEVRQSSFALLGDLTKACFQHVKP-CIADFMPILGTNLNPE--FISVCN 688 (852)
T ss_dssp -HHGGGGHHHHHTCCHHH--HHH-HHTTCSSHHHHHHHHHHHHHHHHHCGGGTGG-GHHHHHHHHHHTCCTT--SHHHHH
T ss_pred -HHhHhHHHHhcCCcHHH--HHH-HHhCCCChhHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHcCcc--chHHHH
Confidence 2334455554 33332 111 1111 23469999999999999988877664 2445566666777443 345566
Q ss_pred HHHHHHHhhhhhh
Q psy9794 233 MSCKLLRNVVDFI 245 (255)
Q Consensus 233 ms~kLLlnLve~I 245 (255)
.++..+-.++..+
T Consensus 689 ~a~~alg~i~~~~ 701 (852)
T 4fdd_A 689 NATWAIGEISIQM 701 (852)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 6666666555544
No 8
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=64.74 E-value=66 Score=27.44 Aligned_cols=105 Identities=9% Similarity=0.086 Sum_probs=74.4
Q ss_pred HHHHHHhHHH----HHHHHHHHHHHhHHH-------hhhhHhhHHHHHHHHhhcCCchhhhHHHHHHHHHHHHhchhhhh
Q psy9794 92 YVDFIGAQIK----TLSFLAYLVRFYQDI-------LNKHSQLLVDGVLNLLLLCPSEVTSMRKELLIAARHILQTDFRT 160 (255)
Q Consensus 92 y~Dfi~AQVK----tlSFLaYvlR~~~~~-------i~~~~~~i~~~ii~LL~~CP~e~~~~RKELLva~RHIlsTd~R~ 160 (255)
|.-|+.-||+ -+.-+.|++|-.... +.+|..++...++-++...- +
T Consensus 45 f~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~----------------l------- 101 (196)
T 4atg_A 45 FIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKS----------------I------- 101 (196)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTT----------------C-------
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcc----------------c-------
Confidence 4555555553 467777887765433 67888887777777653210 0
Q ss_pred cchhhhhhccccccccccCcccccchhhhHHHHHHHHHHHhhCCCCHHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHh
Q psy9794 161 NFVPHMSQLFEEDFQLGSGWTTHESLRPLVYSTLADLVHHVRQLLPMSDLIKAVHLFSKNIHDETLPTTIHTMSCKLLRN 240 (255)
Q Consensus 161 ~F~p~id~LlDErvLiG~G~t~~EtLRpLAYS~lADliHhvR~~Ls~~qi~~~v~~fs~~lhD~sL~~siQ~ms~kLLln 240 (255)
|.. .||-.|-++++.+...--+..+ .--.|++..+.+.+.||+-|.+.+-=+..-|..
T Consensus 102 ----------------~~~-----~LRd~AA~lL~~I~~~~~~~y~-~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~ 159 (196)
T 4atg_A 102 ----------------VDD-----DVRKMSADIVKYIYDTYSRSYK-TLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSI 159 (196)
T ss_dssp ----------------CCH-----HHHHHHHHHHHHHHHHHTTTST-THHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH
T ss_pred ----------------CHH-----HHHHHHHHHHHHHHHHhCccCc-hHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHH
Confidence 000 6999999999999988776554 445899999999999999999888777666655
Q ss_pred h
Q psy9794 241 V 241 (255)
Q Consensus 241 L 241 (255)
|
T Consensus 160 l 160 (196)
T 4atg_A 160 L 160 (196)
T ss_dssp H
T ss_pred h
Confidence 4
No 9
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=59.40 E-value=66 Score=27.95 Aligned_cols=120 Identities=10% Similarity=0.088 Sum_probs=73.2
Q ss_pred HhhhhHhhHHHHHHHHhhcCC----chhhhHHHHHHHHHHHHhc---hhhhhcchhhhhhccccccccccCcccccchhh
Q psy9794 116 ILNKHSQLLVDGVLNLLLLCP----SEVTSMRKELLIAARHILQ---TDFRTNFVPHMSQLFEEDFQLGSGWTTHESLRP 188 (255)
Q Consensus 116 ~i~~~~~~i~~~ii~LL~~CP----~e~~~~RKELLva~RHIls---Td~R~~F~p~id~LlDErvLiG~G~t~~EtLRp 188 (255)
.+++|.+.+...+++.|.+-. .+....|+.-..++..+.. .+.-..++|++...+.+. ....|-
T Consensus 314 ~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~---------~~~~r~ 384 (462)
T 1ibr_B 314 YAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNP---------DWRYRD 384 (462)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCS---------SHHHHH
T ss_pred HHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC---------ChHHHH
Confidence 445566667777777776542 1234567755555554433 344456777777776532 223555
Q ss_pred hHHHHHHHHHHHhh-CCCCHHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHhhhhhhhc
Q psy9794 189 LVYSTLADLVHHVR-QLLPMSDLIKAVHLFSKNIHDETLPTTIHTMSCKLLRNVVDFIHT 247 (255)
Q Consensus 189 LAYS~lADliHhvR-~~Ls~~qi~~~v~~fs~~lhD~sL~~siQ~ms~kLLlnLve~I~~ 247 (255)
-|...+..+....- ..+. .++..++....+.+.|+. +.++..++..|-++.+....
T Consensus 385 aal~~l~~l~~~~~~~~~~-~~l~~~~~~l~~~l~d~~--~~Vr~~a~~~l~~~~~~~~~ 441 (462)
T 1ibr_B 385 AAVMAFGCILEGPEPSQLK-PLVIQAMPTLIELMKDPS--VVVRDTAAWTVGRICELLPE 441 (462)
T ss_dssp HHHHHHHHTSSSSCTTTTC-TTTTTHHHHHHHGGGCSC--HHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHhcCCcHHHHH-HHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHhccc
Confidence 66666666654322 1111 244556677777888876 68999999999999887754
No 10
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=54.76 E-value=1.9e+02 Score=29.54 Aligned_cols=107 Identities=14% Similarity=0.073 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHhHHHhhhhHhhHHHHHHHHhhcCCchhhhHHHHHHHHHHHHhchhhhhcchhhhhhccccccccccCcc
Q psy9794 102 TLSFLAYLVRFYQDILNKHSQLLVDGVLNLLLLCPSEVTSMRKELLIAARHILQTDFRTNFVPHMSQLFEEDFQLGSGWT 181 (255)
Q Consensus 102 tlSFLaYvlR~~~~~i~~~~~~i~~~ii~LL~~CP~e~~~~RKELLva~RHIlsTd~R~~F~p~id~LlDErvLiG~G~t 181 (255)
++.-++.+.+...+.+.+|.+.+.......|++ + ..|..-+-+...+..+-.+..+-|++..++.. |...-..
T Consensus 589 a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~---e--~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~--L~~~l~~ 661 (1230)
T 1u6g_C 589 AISCMGQIICNLGDNLGSDLPNTLQIFLERLKN---E--ITRLTTVKALTLIAGSPLKIDLRPVLGEGVPI--LASFLRK 661 (1230)
T ss_dssp HHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTS---S--SHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHH--HHHHTTS
T ss_pred HHHHHHHHHHHhCchhhhhHHHHHHHHHHHhcc---c--hhHHHHHHHHHHHHhCccccchHHHHHHHHHH--HHHHHHh
Confidence 344455555665666666665555555555543 2 36766666766666543333344444444431 1111112
Q ss_pred cccchhhhHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy9794 182 THESLRPLVYSTLADLVHHVRQLLPMSDLIKAVH 215 (255)
Q Consensus 182 ~~EtLRpLAYS~lADliHhvR~~Ls~~qi~~~v~ 215 (255)
....+|--|...++.++.+....+..+++..++.
T Consensus 662 ~~~~~r~~a~~al~~l~~~~~~~~~~~~v~~~l~ 695 (1230)
T 1u6g_C 662 NQRALKLGTLSALDILIKNYSDSLTAAMIDAVLD 695 (1230)
T ss_dssp CCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHhcccccCCHHHHHHHHH
Confidence 3456888999999999999887777666655553
No 11
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=53.85 E-value=86 Score=28.67 Aligned_cols=108 Identities=19% Similarity=0.176 Sum_probs=75.8
Q ss_pred hhHHHHHHHHhhcCCchhhhHHHHHHHHHHHHhch--hh-----hhcchhhhhhccccccccccCcccccchhhhHHHHH
Q psy9794 122 QLLVDGVLNLLLLCPSEVTSMRKELLIAARHILQT--DF-----RTNFVPHMSQLFEEDFQLGSGWTTHESLRPLVYSTL 194 (255)
Q Consensus 122 ~~i~~~ii~LL~~CP~e~~~~RKELLva~RHIlsT--d~-----R~~F~p~id~LlDErvLiG~G~t~~EtLRpLAYS~l 194 (255)
......++++|++- ....|..-+.++.++... ++ ..+.+|.+=.++.+ ..+.+|--|...+
T Consensus 172 ~g~i~~Lv~lL~~~---~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~---------~~~~v~~~a~~~L 239 (530)
T 1wa5_B 172 ADAVPLFIQLLYTG---SVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS---------NKPSLIRTATWTL 239 (530)
T ss_dssp TTCHHHHHHHHHHC---CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS---------CCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHcCC---CHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc---------CCHHHHHHHHHHH
Confidence 34566788888863 356788999999998864 33 34677777777654 2355777788888
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHhhhh
Q psy9794 195 ADLVHHVRQLLPMSDLIKAVHLFSKNIHDETLPTTIHTMSCKLLRNVVD 243 (255)
Q Consensus 195 ADliHhvR~~Ls~~qi~~~v~~fs~~lhD~sL~~siQ~ms~kLLlnLve 243 (255)
+.|..+--..........++....+.+.|+. ..++..++..|-||.+
T Consensus 240 ~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d--~~v~~~a~~~L~~L~~ 286 (530)
T 1wa5_B 240 SNLCRGKKPQPDWSVVSQALPTLAKLIYSMD--TETLVDACWAISYLSD 286 (530)
T ss_dssp HHHHCCSSSCCCHHHHGGGHHHHHHHTTCCC--HHHHHHHHHHHHHHHS
T ss_pred HHHhCCCCCCCcHHHHHhHHHHHHHHHcCCC--HHHHHHHHHHHHHHhC
Confidence 8887554334455556667777777777765 6788888888888874
No 12
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=51.55 E-value=1.9e+02 Score=28.52 Aligned_cols=172 Identities=15% Similarity=0.133 Sum_probs=83.5
Q ss_pred hhHHhhHHHHHHHHHHhhcCCCCccc--cCChhhhHHHHHHHHHhHHHHHHHHHHHHHHhHHHhhhhHhhHHHHHHHHhh
Q psy9794 56 ENVKKDLEEFIPIILKTVNLKPPIDF--VTAPEIYKEIYVDFIGAQIKTLSFLAYLVRFYQDILNKHSQLLVDGVLNLLL 133 (255)
Q Consensus 56 ~~v~~~i~~fiPli~~~l~l~~~~q~--~~~p~~n~~~y~Dfi~AQVKtlSFLaYvlR~~~~~i~~~~~~i~~~ii~LL~ 133 (255)
+...+.+.++++.++.-+.. ++... .+.++ ..+.|.+|..+= .-++.++.+...+.+ .+.+-+.+-+.|.
T Consensus 384 ~~~~~~l~~l~~~ll~~~~~-p~~~~~~~~~~d-e~~~~~~~r~~~---~~~L~~~~~~~~~~~---l~~~~~~l~~~l~ 455 (963)
T 2x19_B 384 QVYRPVYFQLVDVLLHKAQF-PSDEEYGFWSSD-EKEQFRIYRVDI---SDTLMYVYEMLGAEL---LSNLYDKLGRLLT 455 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHSC-CCHHHHHTSCHH-HHHHHHHHHHHH---HHHHHHHHHHHTHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcC-CCcccccCCChh-HHHHHHHHHHHH---HHHHHHHHHHccHHH---HHHHHHHHHHHHH
Confidence 34456777778888776642 22210 01111 123444443331 222333322222111 1222223333343
Q ss_pred cCCchhhhHHHH-HHHHHHHHhchhhhhcchhhhhhccccccccccCcccccchhhhHHHHHHHHHHHhhCCCCHHHHHH
Q psy9794 134 LCPSEVTSMRKE-LLIAARHILQTDFRTNFVPHMSQLFEEDFQLGSGWTTHESLRPLVYSTLADLVHHVRQLLPMSDLIK 212 (255)
Q Consensus 134 ~CP~e~~~~RKE-LLva~RHIlsTd~R~~F~p~id~LlDErvLiG~G~t~~EtLRpLAYS~lADliHhvR~~Ls~~qi~~ 212 (255)
..+....+..+| .+.|...|... .....-++++.+++ ++.+-.. .+..+|--+.-++.-+-+.+.. ..+.+..
T Consensus 456 ~~~~~~~w~~~eaal~al~~i~~~-~~~~~~~~l~~l~~--~l~~l~~-~~~~vr~~~~~~l~~~~~~l~~--~~~~l~~ 529 (963)
T 2x19_B 456 SSEEPYSWQHTEALLYGFQSIAET-IDVNYSDVVPGLIG--LIPRISI-SNVQLADTVMFTIGALSEWLAD--HPVMINS 529 (963)
T ss_dssp TCCCSCCHHHHHHHHHHHHHHTTS-CCSSCCSHHHHHHH--HGGGSCC-CSHHHHHHHHHHHHHTHHHHHH--CHHHHTT
T ss_pred hcCCCCchHHHHHHHHHHHHHHhh-cCchhhHHHHHHHH--HHHhCCC-CcHHHHHHHHHHHHHHHHHHHh--CHHHHHH
Confidence 322222344444 45555555542 11122345555555 3332211 2334555555555544444443 2467777
Q ss_pred HHHHhhcccCCCCchhHHHHHHHHHHHhhhhhh
Q psy9794 213 AVHLFSKNIHDETLPTTIHTMSCKLLRNVVDFI 245 (255)
Q Consensus 213 ~v~~fs~~lhD~sL~~siQ~ms~kLLlnLve~I 245 (255)
++....+.++| +.+|.++|..+.++++..
T Consensus 530 vl~~l~~~l~~----~~V~~~A~~al~~l~~~~ 558 (963)
T 2x19_B 530 VLPLVLHALGN----PELSVSSVSTLKKICREC 558 (963)
T ss_dssp THHHHHHHTTC----GGGHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCC----chHHHHHHHHHHHHHHHH
Confidence 88877788877 579999999999998753
No 13
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=46.14 E-value=1.2e+02 Score=24.66 Aligned_cols=131 Identities=12% Similarity=0.090 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHhHHHhhhhHhhHHHHHHHHhhcCCchhhhHHHHHHHHHHHHhch-hhhhcchhhhhhccccccccccC
Q psy9794 101 KTLSFLAYLVRFYQDILNKHSQLLVDGVLNLLLLCPSEVTSMRKELLIAARHILQT-DFRTNFVPHMSQLFEEDFQLGSG 179 (255)
Q Consensus 101 KtlSFLaYvlR~~~~~i~~~~~~i~~~ii~LL~~CP~e~~~~RKELLva~RHIlsT-d~R~~F~p~id~LlDErvLiG~G 179 (255)
.++.-++-+.++..+.+.+|.+.+...++..|.| + ....|.....|++.+... .+ ..++|.+-..++++
T Consensus 76 ~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~d-~--~~~vr~~a~~aL~~~~~~~~~-~~ll~~l~~~l~~~------ 145 (242)
T 2qk2_A 76 MAGKCLALLAKGLAKRFSNYASACVPSLLEKFKE-K--KPNVVTALREAIDAIYASTSL-EAQQESIVESLSNK------ 145 (242)
T ss_dssp HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGGC-C--CHHHHHHHHHHHHHHHTTSCH-HHHHHHHHHHTTCS------
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcC-C--CHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHcCC------
Confidence 3444455566777778899999999999999987 2 357888899999988864 22 22334433333211
Q ss_pred cccccchhhhHHHHHHHHHHHh-hCCCCHHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHhhhhhhh
Q psy9794 180 WTTHESLRPLVYSTLADLVHHV-RQLLPMSDLIKAVHLFSKNIHDETLPTTIHTMSCKLLRNVVDFIH 246 (255)
Q Consensus 180 ~t~~EtLRpLAYS~lADliHhv-R~~Ls~~qi~~~v~~fs~~lhD~sL~~siQ~ms~kLLlnLve~I~ 246 (255)
.-..|--+.+.++.++.+. ........+..++......+.|+.- .+...+...+-.+...+.
T Consensus 146 ---~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~--~VR~~A~~~l~~l~~~vg 208 (242)
T 2qk2_A 146 ---NPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDP--TVRDSSAEALGTLIKLMG 208 (242)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCH--HHHHHHHHHHHHHHHHHC
T ss_pred ---ChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHHHHHcC
Confidence 2357888888888877554 3446667888888888899988864 466666666666655553
No 14
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=41.43 E-value=75 Score=25.42 Aligned_cols=142 Identities=13% Similarity=0.130 Sum_probs=85.9
Q ss_pred HHHHHHHHhhcCCCCccccCChhhhHHHHHHHHHhHHHHHHHHHHHHHHhHHHhhhh-HhhHHHHHHHHhhcCCchhhhH
Q psy9794 64 EFIPIILKTVNLKPPIDFVTAPEIYKEIYVDFIGAQIKTLSFLAYLVRFYQDILNKH-SQLLVDGVLNLLLLCPSEVTSM 142 (255)
Q Consensus 64 ~fiPli~~~l~l~~~~q~~~~p~~n~~~y~Dfi~AQVKtlSFLaYvlR~~~~~i~~~-~~~i~~~ii~LL~~CP~e~~~~ 142 (255)
..+|.++..+.-+. + ..|..++..|..+..+..+.-... .......++++|++ | ....
T Consensus 54 g~i~~L~~lL~~~~-------~-----------~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~--~~~v 112 (252)
T 4db8_A 54 GALPALVQLLSSPN-------E-----------QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS-P--NEQI 112 (252)
T ss_dssp THHHHHHHGGGCSC-------H-----------HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGC-S--CHHH
T ss_pred CcHHHHHHHHcCCC-------H-----------HHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcC-C--CHHH
Confidence 46788888774321 1 245556666666654333222221 22356678888887 3 2578
Q ss_pred HHHHHHHHHHHhchh-hh------hcchhhhhhccccccccccCcccccchhhhHHHHHHHHHHHhhCCCCHHHHH----
Q psy9794 143 RKELLIAARHILQTD-FR------TNFVPHMSQLFEEDFQLGSGWTTHESLRPLVYSTLADLVHHVRQLLPMSDLI---- 211 (255)
Q Consensus 143 RKELLva~RHIlsTd-~R------~~F~p~id~LlDErvLiG~G~t~~EtLRpLAYS~lADliHhvR~~Ls~~qi~---- 211 (255)
|+.-+.++.++...+ .| .+.+|.+=.++++. .+.+|--|...++.+..+ +.++..
T Consensus 113 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~---------~~~v~~~a~~~L~~l~~~-----~~~~~~~~~~ 178 (252)
T 4db8_A 113 LQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP---------NEQILQEALWALSNIASG-----GNEQIQAVID 178 (252)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS---------CHHHHHHHHHHHHHHTTS-----CHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCC---------CHHHHHHHHHHHHHHHcC-----ChHHHHHHHH
Confidence 899999999987642 22 35677777776542 345677777777776632 112211
Q ss_pred -HHHHHhhcccCCCCchhHHHHHHHHHHHhhh
Q psy9794 212 -KAVHLFSKNIHDETLPTTIHTMSCKLLRNVV 242 (255)
Q Consensus 212 -~~v~~fs~~lhD~sL~~siQ~ms~kLLlnLv 242 (255)
.++....+.+.++ ...++..++..|-|+.
T Consensus 179 ~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~ 208 (252)
T 4db8_A 179 AGALPALVQLLSSP--NEQILQEALWALSNIA 208 (252)
T ss_dssp TTCHHHHHHGGGCS--SHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHCCC--CHHHHHHHHHHHHHHh
Confidence 2344455556555 5778999999999886
No 15
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=40.39 E-value=1.1e+02 Score=24.52 Aligned_cols=103 Identities=15% Similarity=0.135 Sum_probs=69.7
Q ss_pred hhHHHHHHHHhhcCCchhhhHHHHHHHHHHHHhchh-------hhhcchhhhhhccccccccccCcccccchhhhHHHHH
Q psy9794 122 QLLVDGVLNLLLLCPSEVTSMRKELLIAARHILQTD-------FRTNFVPHMSQLFEEDFQLGSGWTTHESLRPLVYSTL 194 (255)
Q Consensus 122 ~~i~~~ii~LL~~CP~e~~~~RKELLva~RHIlsTd-------~R~~F~p~id~LlDErvLiG~G~t~~EtLRpLAYS~l 194 (255)
....+.++++|++. ....|++-+.++.++...+ ...+.+|.+=.++++. .+.+|--|...|
T Consensus 137 ~~~i~~L~~lL~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~---------~~~v~~~a~~~L 204 (252)
T 4db8_A 137 AGALPALVQLLSSP---NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP---------NEQILQEALWAL 204 (252)
T ss_dssp TTHHHHHHHGGGCS---CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCS---------SHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhCC---CHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCC---------CHHHHHHHHHHH
Confidence 34667788888764 2467999999999998632 2356788877777642 456788888888
Q ss_pred HHHHHHhhCCCCHHHHHH-----HHHHhhcccCCCCchhHHHHHHHHHHHhhhh
Q psy9794 195 ADLVHHVRQLLPMSDLIK-----AVHLFSKNIHDETLPTTIHTMSCKLLRNVVD 243 (255)
Q Consensus 195 ADliHhvR~~Ls~~qi~~-----~v~~fs~~lhD~sL~~siQ~ms~kLLlnLve 243 (255)
+.+..+ +.++... ++....+.+.++ ...+|..++..|-||..
T Consensus 205 ~~l~~~-----~~~~~~~~~~~g~i~~L~~ll~~~--~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 205 SNIASG-----GNEQKQAVKEAGALEKLEQLQSHE--NEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHTTS-----CHHHHHHHHHTTHHHHHHTTTTCS--SSHHHHTHHHHHHTTC-
T ss_pred HHHhcC-----CHHHHHHHHHCCcHHHHHHHhCCC--CHHHHHHHHHHHHHHhc
Confidence 888732 2222222 445566666665 34788999999988864
No 16
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=38.03 E-value=2.2e+02 Score=25.48 Aligned_cols=107 Identities=9% Similarity=0.057 Sum_probs=71.9
Q ss_pred hhHHHHHHHHhhcCCchhhhHHHHHHHHHHHHhch----hhhhcchhhhhhccccccccccCcccccchhhhHHHHHHHH
Q psy9794 122 QLLVDGVLNLLLLCPSEVTSMRKELLIAARHILQT----DFRTNFVPHMSQLFEEDFQLGSGWTTHESLRPLVYSTLADL 197 (255)
Q Consensus 122 ~~i~~~ii~LL~~CP~e~~~~RKELLva~RHIlsT----d~R~~F~p~id~LlDErvLiG~G~t~~EtLRpLAYS~lADl 197 (255)
+.+...++++|.+.. ...|+.-+.+...+... .+...++|.+-.++++ .....|--|...+.++
T Consensus 440 ~~l~~~l~~~l~d~~---~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~~---------~~~~~R~~a~~~l~~l 507 (588)
T 1b3u_A 440 EKLNSLCMAWLVDHV---YAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGD---------PNYLHRMTTLFCINVL 507 (588)
T ss_dssp HHHHHHHHHGGGCSS---HHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTC---------SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCc---HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhC---------CCHHHHHHHHHHHHHH
Confidence 456677778887653 56788888888888753 2456777777655432 2345788888888888
Q ss_pred HHHhhCCCCHHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHhhhhhh
Q psy9794 198 VHHVRQLLPMSDLIKAVHLFSKNIHDETLPTTIHTMSCKLLRNVVDFI 245 (255)
Q Consensus 198 iHhvR~~Ls~~qi~~~v~~fs~~lhD~sL~~siQ~ms~kLLlnLve~I 245 (255)
..++..+. ....++....+.+.|+. ..++..+++.+-.+++.+
T Consensus 508 ~~~~~~~~---~~~~~~~~l~~~l~d~~--~~Vr~~a~~~l~~l~~~~ 550 (588)
T 1b3u_A 508 SEVCGQDI---TTKHMLPTVLRMAGDPV--ANVRFNVAKSLQKIGPIL 550 (588)
T ss_dssp HHHHHHHH---HHHHTHHHHHHGGGCSC--HHHHHHHHHHHHHHGGGS
T ss_pred HHhcCHHH---HHHHHHHHHHhhCCCCC--chHHHHHHHHHHHHHHHh
Confidence 87765432 33455556667777875 567888888877776543
No 17
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=37.89 E-value=2e+02 Score=24.87 Aligned_cols=133 Identities=16% Similarity=0.132 Sum_probs=76.2
Q ss_pred hHHHHHHHHHHHHHHhHHHhhhh-HhhHHHHHHHHhhcCCchhhhHHHHHHHHHHHHhch--hhh-----hcchhhhhhc
Q psy9794 98 AQIKTLSFLAYLVRFYQDILNKH-SQLLVDGVLNLLLLCPSEVTSMRKELLIAARHILQT--DFR-----TNFVPHMSQL 169 (255)
Q Consensus 98 AQVKtlSFLaYvlR~~~~~i~~~-~~~i~~~ii~LL~~CP~e~~~~RKELLva~RHIlsT--d~R-----~~F~p~id~L 169 (255)
.|..+...++-+..+..+..+.. ........+++|++ +....|..-+.++..+... +.| .+.+|.+=.+
T Consensus 81 v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~---~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~ 157 (450)
T 2jdq_A 81 LQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSS---EFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQL 157 (450)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTC---SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcC---CCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHH
Confidence 45566666666655433332222 23466677788875 2357888999999998875 333 4677777777
Q ss_pred cccccccccCcccccchhhhHHHHHHHHHHHhhCCCCHHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHhhhh
Q psy9794 170 FEEDFQLGSGWTTHESLRPLVYSTLADLVHHVRQLLPMSDLIKAVHLFSKNIHDETLPTTIHTMSCKLLRNVVD 243 (255)
Q Consensus 170 lDErvLiG~G~t~~EtLRpLAYS~lADliHhvR~~Ls~~qi~~~v~~fs~~lhD~sL~~siQ~ms~kLLlnLve 243 (255)
+.+ ...+.+|-.|-..+..+..+--.......+..++....+.+.|+. ..++..++..|-|+.+
T Consensus 158 l~~--------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~--~~v~~~a~~~L~~l~~ 221 (450)
T 2jdq_A 158 FSK--------QNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSD--TDVLADACWALSYLSD 221 (450)
T ss_dssp TTS--------CCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCC--HHHHHHHHHHHHHHTS
T ss_pred hcC--------CCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCC--HHHHHHHHHHHHHHHC
Confidence 653 123456777777777666432112222222334444444455443 4667777777777654
No 18
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=37.69 E-value=1.8e+02 Score=28.80 Aligned_cols=82 Identities=11% Similarity=0.062 Sum_probs=55.5
Q ss_pred HHhhhhHhhHHHHHHHHhhcCCchhhhHHHHHHHHHHHHhchhhhhcchhhhhhccccccccccCcccccchhhhHHHHH
Q psy9794 115 DILNKHSQLLVDGVLNLLLLCPSEVTSMRKELLIAARHILQTDFRTNFVPHMSQLFEEDFQLGSGWTTHESLRPLVYSTL 194 (255)
Q Consensus 115 ~~i~~~~~~i~~~ii~LL~~CP~e~~~~RKELLva~RHIlsTd~R~~F~p~id~LlDErvLiG~G~t~~EtLRpLAYS~l 194 (255)
+.+.++.+.+-..+.+++.+.+.+ ....++..-+.+.++.+ +...|.|+++.+++ .++ .++...+. +-+..++
T Consensus 683 ~~~~~~~~~i~~~l~~~l~~~~~~-~~v~e~~~~~~~~~~~~-~~~~~~p~l~~~~~-~l~--~~~~~~~~--~~~l~l~ 755 (971)
T 2x1g_F 683 QPVLLVMQRTMPIFKRIAEMWVEE-IDVLEAACSAMKHAITN-LRSSFQPMLQDLCL-FIV--ASFQTRCC--APTLEIS 755 (971)
T ss_dssp -CCHHHHHTTHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHHH-HHC--CTHHHHHHH-HHH--HHCC--CC--HHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHHHh-hhhhccccHHHHHH-HHH--HHHhcCCc--hHHHHHH
Confidence 356777888888888888876633 56677888888887654 56778999999883 333 44444443 6688888
Q ss_pred HHHHHHhhC
Q psy9794 195 ADLVHHVRQ 203 (255)
Q Consensus 195 ADliHhvR~ 203 (255)
+++++-...
T Consensus 756 ~~~i~~~~~ 764 (971)
T 2x1g_F 756 KTAIVMFFK 764 (971)
T ss_dssp HHHHTTCCC
T ss_pred HHHHHHhCC
Confidence 899886655
No 19
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=33.21 E-value=1.7e+02 Score=22.82 Aligned_cols=127 Identities=16% Similarity=0.147 Sum_probs=78.7
Q ss_pred hHHHHHHHHHHHHHHhHHHhhhh-HhhHHHHHHHHhhcCCchhhhHHHHHHHHHHHHhch--hhhh-----cchhhhhhc
Q psy9794 98 AQIKTLSFLAYLVRFYQDILNKH-SQLLVDGVLNLLLLCPSEVTSMRKELLIAARHILQT--DFRT-----NFVPHMSQL 169 (255)
Q Consensus 98 AQVKtlSFLaYvlR~~~~~i~~~-~~~i~~~ii~LL~~CP~e~~~~RKELLva~RHIlsT--d~R~-----~F~p~id~L 169 (255)
.|..++..++.+.+...+..+.. .....+.++++|++.. ...|.+.+.++.++... +.|. +.+|.+=.+
T Consensus 18 ~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~---~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~l 94 (252)
T 4hxt_A 18 TQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTD---SEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKL 94 (252)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSC---HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCC---HHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHH
Confidence 45666777777766544333322 2345667778887743 67789999999999864 4444 567777666
Q ss_pred cccccccccCcccccchhhhHHHHHHHHHHHhhCCCCHHHHH-----HHHHHhhcccCCCCchhHHHHHHHHHHHhhhh
Q psy9794 170 FEEDFQLGSGWTTHESLRPLVYSTLADLVHHVRQLLPMSDLI-----KAVHLFSKNIHDETLPTTIHTMSCKLLRNVVD 243 (255)
Q Consensus 170 lDErvLiG~G~t~~EtLRpLAYS~lADliHhvR~~Ls~~qi~-----~~v~~fs~~lhD~sL~~siQ~ms~kLLlnLve 243 (255)
+++ ..+.+|--|-..++-+..+ +.+... .++....+.+.|++ ..++..++..|-|+..
T Consensus 95 l~~---------~~~~v~~~a~~~L~~l~~~-----~~~~~~~~~~~~~i~~L~~~l~~~~--~~~~~~a~~~L~~l~~ 157 (252)
T 4hxt_A 95 LTS---------TDSEVQKEAARALANIASG-----PDEAIKAIVDAGGVEVLVKLLTSTD--SEVQKEAARALANIAS 157 (252)
T ss_dssp TTC---------SSHHHHHHHHHHHHHHTTS-----CHHHHHHHHHTTHHHHHHHHTTCSC--HHHHHHHHHHHHHHTT
T ss_pred HcC---------CCHHHHHHHHHHHHHHHcC-----CHHHHHHHHHCCCHHHHHHHHcCCC--HHHHHHHHHHHHHHHc
Confidence 653 2356777777777777621 111111 23444445555555 6788889999998864
No 20
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=31.42 E-value=94 Score=30.70 Aligned_cols=88 Identities=13% Similarity=0.105 Sum_probs=55.8
Q ss_pred HHHHHHhHHHhh---hhHhhHHHHHHHHhhcCCchhhhHHHHHHHHHHHHhchhhhhcchhhhhhcccccc-ccccCccc
Q psy9794 107 AYLVRFYQDILN---KHSQLLVDGVLNLLLLCPSEVTSMRKELLIAARHILQTDFRTNFVPHMSQLFEEDF-QLGSGWTT 182 (255)
Q Consensus 107 aYvlR~~~~~i~---~~~~~i~~~ii~LL~~CP~e~~~~RKELLva~RHIlsTd~R~~F~p~id~LlDErv-LiG~G~t~ 182 (255)
.+++-.|.+.+. +|.+.+...+++.|.+ | ..|..--.|.+.+. .+.++.|.||++.+++.=. ++..+- .
T Consensus 510 ~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~-~----~V~~~A~~al~~l~-~~~~~~l~p~~~~il~~l~~~l~~~~-~ 582 (963)
T 2x19_B 510 MFTIGALSEWLADHPVMINSVLPLVLHALGN-P----ELSVSSVSTLKKIC-RECKYDLPPYAANIVAVSQDVLMKQI-H 582 (963)
T ss_dssp HHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC-G----GGHHHHHHHHHHHH-HHTGGGCTTTHHHHHHHHHHHHHTTC-S
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC-c----hHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHhccCC-C
Confidence 444555555554 3445555667777765 3 34556677777776 4688899999999887421 223321 2
Q ss_pred ccchhhhHHHHHHHHHHHh
Q psy9794 183 HESLRPLVYSTLADLVHHV 201 (255)
Q Consensus 183 ~EtLRpLAYS~lADliHhv 201 (255)
....|..+|..++.++..+
T Consensus 583 ~~~~~~~~~eai~~i~~~~ 601 (963)
T 2x19_B 583 KTSQCMWLMQALGFLLSAL 601 (963)
T ss_dssp CHHHHHHHHHHHHHHHTTS
T ss_pred ChHHHHHHHHHHHHHHhcC
Confidence 3357888898888888543
No 21
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=30.60 E-value=1.7e+02 Score=24.57 Aligned_cols=69 Identities=14% Similarity=0.179 Sum_probs=48.4
Q ss_pred hHHH--HHHHHHHHHHHhH---HHhhhhH-hhHHHHHHHHhhcCCchhhhHHHHHHHHHHHHhchhhhhcchhhhhhc
Q psy9794 98 AQIK--TLSFLAYLVRFYQ---DILNKHS-QLLVDGVLNLLLLCPSEVTSMRKELLIAARHILQTDFRTNFVPHMSQL 169 (255)
Q Consensus 98 AQVK--tlSFLaYvlR~~~---~~i~~~~-~~i~~~ii~LL~~CP~e~~~~RKELLva~RHIlsTd~R~~F~p~id~L 169 (255)
.|+| +++|++.++.... +.+.+|. +.+...+.++|.|=-+++-..=-|.|.+.--+++. +.|-|+++.|
T Consensus 160 ~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~---~~~~p~l~~L 234 (249)
T 2qk1_A 160 PQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGM---NTFVKTLEHL 234 (249)
T ss_dssp HHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCS---GGGHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCH---HHHHHHHHHH
Confidence 4555 7889999988766 5677888 88999999999765444333334777776666664 3577777775
No 22
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=29.81 E-value=4.3e+02 Score=26.33 Aligned_cols=148 Identities=13% Similarity=0.123 Sum_probs=81.7
Q ss_pred hhhHHhhHHHHHHHHHHhhcCCCCccccCChhhhHHHHHHHHHhHHHHHHHHHHHHHHhHHHhhhhHhhHHHHHHHHhhc
Q psy9794 55 KENVKKDLEEFIPIILKTVNLKPPIDFVTAPEIYKEIYVDFIGAQIKTLSFLAYLVRFYQDILNKHSQLLVDGVLNLLLL 134 (255)
Q Consensus 55 k~~v~~~i~~fiPli~~~l~l~~~~q~~~~p~~n~~~y~Dfi~AQVKtlSFLaYvlR~~~~~i~~~~~~i~~~ii~LL~~ 134 (255)
+..+..++..++|+++.++....|... ..|+- .+ -..+-..+..+.--+.-+...|.+.+.+|.+.+.+.+++++.+
T Consensus 222 ~~~~~~~~~~~~~~~~~~l~~~~p~~~-~d~d~-~~-~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~ 298 (960)
T 1wa5_C 222 PEFFEDNIQVGMGIFHKYLSYSNPLLE-DPDET-EH-ASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTS 298 (960)
T ss_dssp CHHHHHTHHHHHHHHHHHHSCCSCCCC--------C-CCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCCccc-CCccc-cc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456667788899999999987654211 11100 00 0011111112233344444567777888988999999998874
Q ss_pred CC--chhhhHHHHHHHHHHHHhchh-hhhcch--hhhhhccc-------------ccccccc---------Ccccccchh
Q psy9794 135 CP--SEVTSMRKELLIAARHILQTD-FRTNFV--PHMSQLFE-------------EDFQLGS---------GWTTHESLR 187 (255)
Q Consensus 135 CP--~e~~~~RKELLva~RHIlsTd-~R~~F~--p~id~LlD-------------ErvLiG~---------G~t~~EtLR 187 (255)
.- ..--..+-+.+--.+.+...+ ++..|- |+++.++. +..+-++ +-.-.++.|
T Consensus 299 ~~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R 378 (960)
T 1wa5_C 299 ISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRR 378 (960)
T ss_dssp CCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHH
T ss_pred cCCCcCcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcH
Confidence 32 111244555555556665543 355554 67776662 2211111 013346999
Q ss_pred hhHHHHHHHHHHHhhCCC
Q psy9794 188 PLVYSTLADLVHHVRQLL 205 (255)
Q Consensus 188 pLAYS~lADliHhvR~~L 205 (255)
+-|...+-++..+..+.+
T Consensus 379 ~aa~~~L~~l~~~~~~~v 396 (960)
T 1wa5_C 379 RACTDFLKELKEKNEVLV 396 (960)
T ss_dssp HHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHcchhH
Confidence 999999999998876433
No 23
>1v32_A AT5G08430, hypothetical protein RAFL09-47-K03; SWI/SNF complex subunit, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=29.66 E-value=63 Score=24.81 Aligned_cols=34 Identities=12% Similarity=0.358 Sum_probs=27.9
Q ss_pred HHHHHHHHHhhC----CCCHHHHHHHHHHhhc--ccCCCC
Q psy9794 192 STLADLVHHVRQ----LLPMSDLIKAVHLFSK--NIHDET 225 (255)
Q Consensus 192 S~lADliHhvR~----~Ls~~qi~~~v~~fs~--~lhD~s 225 (255)
.-||+++.|+-. +++-.++.+.+--|.| ||.||.
T Consensus 18 ~eLa~fl~~iG~~~~~~~sR~eVvk~lW~YIK~nnLQdp~ 57 (101)
T 1v32_A 18 RQLIEFLHSLGKDTSEMISRYDVSDTIAKYISKEGLLDPS 57 (101)
T ss_dssp HHHHHHHHHHTCCCSSCCCHHHHHHHHHHHHHHHTCBCSS
T ss_pred HHHHHHHHHcCCCCccccCHHHHHHHHHHHHHhhcCcCcc
Confidence 349999987775 5999999999988876 788875
No 24
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=28.83 E-value=2e+02 Score=22.15 Aligned_cols=127 Identities=13% Similarity=0.107 Sum_probs=78.1
Q ss_pred hHHHHHHHHHHHHHHhHHHhhhh-HhhHHHHHHHHhhcCCchhhhHHHHHHHHHHHHhc--hhhh-----hcchhhhhhc
Q psy9794 98 AQIKTLSFLAYLVRFYQDILNKH-SQLLVDGVLNLLLLCPSEVTSMRKELLIAARHILQ--TDFR-----TNFVPHMSQL 169 (255)
Q Consensus 98 AQVKtlSFLaYvlR~~~~~i~~~-~~~i~~~ii~LL~~CP~e~~~~RKELLva~RHIls--Td~R-----~~F~p~id~L 169 (255)
.|..++..|+++.++..+..+.. .......++++|++.. ...|.+-+.++.++.. .+.| .+.+|.+=.+
T Consensus 28 v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~---~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l 104 (210)
T 4db6_A 28 ELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPN---EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL 104 (210)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSC---HHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCC---HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHH
Confidence 56667777777765444333222 2345667888887653 4678899999999874 2333 4567777777
Q ss_pred cccccccccCcccccchhhhHHHHHHHHHHHhhCCCCHHHHH-----HHHHHhhcccCCCCchhHHHHHHHHHHHhhhh
Q psy9794 170 FEEDFQLGSGWTTHESLRPLVYSTLADLVHHVRQLLPMSDLI-----KAVHLFSKNIHDETLPTTIHTMSCKLLRNVVD 243 (255)
Q Consensus 170 lDErvLiG~G~t~~EtLRpLAYS~lADliHhvR~~Ls~~qi~-----~~v~~fs~~lhD~sL~~siQ~ms~kLLlnLve 243 (255)
+++. .+.+|--|...+.-+..+ +.++.. .++....+.+.++ ...+|..++..|.|+..
T Consensus 105 L~~~---------~~~v~~~a~~~L~~l~~~-----~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~ 167 (210)
T 4db6_A 105 LSSP---------NEQILQEALWALSNIASG-----GNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIAS 167 (210)
T ss_dssp TTCS---------CHHHHHHHHHHHHHHTTS-----CHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHT
T ss_pred HcCC---------cHHHHHHHHHHHHHHHcC-----CHHHHHHHHHcCcHHHHHHHHcCC--CHHHHHHHHHHHHHHHc
Confidence 7542 345666777777666532 222221 1344444555554 46789999999988864
No 25
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=23.41 E-value=2.9e+02 Score=22.22 Aligned_cols=118 Identities=16% Similarity=0.157 Sum_probs=61.7
Q ss_pred HHHHhhhhhhHHhhHHHHHHHHHHhhcCCCCccccCC---------hhhh-HHHHHHH--------HHhHHHHHHHHHHH
Q psy9794 48 VLVYQLYKENVKKDLEEFIPIILKTVNLKPPIDFVTA---------PEIY-KEIYVDF--------IGAQIKTLSFLAYL 109 (255)
Q Consensus 48 v~l~Q~Yk~~v~~~i~~fiPli~~~l~l~~~~q~~~~---------p~~n-~~~y~Df--------i~AQVKtlSFLaYv 109 (255)
-.+-......+.+.+..++|.++..+.=+-+ ..+.. ...+ ......+ -..+.-+++|++-+
T Consensus 82 ~~la~~l~~~~~~~~~~ilp~ll~~l~d~~~-~vr~~a~~aL~~~~~~~~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~ 160 (242)
T 2qk2_A 82 ALLAKGLAKRFSNYASACVPSLLEKFKEKKP-NVVTALREAIDAIYASTSLEAQQESIVESLSNKNPSVKSETALFIARA 160 (242)
T ss_dssp HHHHHHHGGGGHHHHHHHHHHHHHGGGCCCH-HHHHHHHHHHHHHHTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 3333444556668888899999998753211 11110 0000 0111111 12344478888887
Q ss_pred HHHhH-H-HhhhhHhhHHHHHHHHhhcCCchhhhHHHHHHHHHHHHhchhhhhcchhhhhhc
Q psy9794 110 VRFYQ-D-ILNKHSQLLVDGVLNLLLLCPSEVTSMRKELLIAARHILQTDFRTNFVPHMSQL 169 (255)
Q Consensus 110 lR~~~-~-~i~~~~~~i~~~ii~LL~~CP~e~~~~RKELLva~RHIlsTd~R~~F~p~id~L 169 (255)
+..+. + ...+|.+.+...++.+|.|=- ...|+.-..++-.+...==...|-|+++.|
T Consensus 161 l~~~~~~~~~~~~l~~l~p~l~~~l~D~~---~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L 219 (242)
T 2qk2_A 161 LTRTQPTALNKKLLKLLTTSLVKTLNEPD---PTVRDSSAEALGTLIKLMGDKAVTPLLADV 219 (242)
T ss_dssp HTTCCGGGCCHHHHHHHHHHHHHHHTSSC---HHHHHHHHHHHHHHHHHHCHHHHGGGGTTS
T ss_pred HHHcCCCCccHHHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHHHHHcCHHHHHHHHHhc
Confidence 76653 3 356777888888888886543 446665544444433210012355555554
No 26
>4fqn_A Malcavernin; helical domain, harmonin-homology domain, protein-protein interaction, HOMO-dimer, protein binding; 1.90A {Homo sapiens}
Probab=22.71 E-value=32 Score=26.76 Aligned_cols=56 Identities=18% Similarity=0.284 Sum_probs=0.0
Q ss_pred HHHhHHHhhhh--HhhHHHHHHHHhhcCCchhhhHHHHHHHHHHHHhchhhhhcchhhhhhc
Q psy9794 110 VRFYQDILNKH--SQLLVDGVLNLLLLCPSEVTSMRKELLIAARHILQTDFRTNFVPHMSQL 169 (255)
Q Consensus 110 lR~~~~~i~~~--~~~i~~~ii~LL~~CP~e~~~~RKELLva~RHIlsTd~R~~F~p~id~L 169 (255)
+..|+..++.| +-.|-+...+|++-|-++ ||-||-.+||++..+=...|=.++..+
T Consensus 34 lqqFA~Llr~YR~G~~I~~Fc~kLl~LyG~~----Rk~LL~gmRpFIp~~Di~~FesFle~i 91 (98)
T 4fqn_A 34 IQQFAALLHEYRNGASIHEFCINLRQLYGDS----RKFLLLGLRPFIPEKDSQHFENFLETI 91 (98)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHCGG----GGGGGGGGGGGSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHhchH----HHHHHhhccCCCChhhHHHHHHHHHHc
No 27
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=22.62 E-value=3.7e+02 Score=23.09 Aligned_cols=114 Identities=9% Similarity=0.095 Sum_probs=75.1
Q ss_pred HhhHHHHHHHHhhcCCchhhhHHHHHHHHHHHHhchhhhh----cchhhhhhccccccccccCcccccchhhhHHHHHHH
Q psy9794 121 SQLLVDGVLNLLLLCPSEVTSMRKELLIAARHILQTDFRT----NFVPHMSQLFEEDFQLGSGWTTHESLRPLVYSTLAD 196 (255)
Q Consensus 121 ~~~i~~~ii~LL~~CP~e~~~~RKELLva~RHIlsTd~R~----~F~p~id~LlDErvLiG~G~t~~EtLRpLAYS~lAD 196 (255)
.+.|-+.++++|.+.++.. +-+-.++-.|...++-. .++|.+=..++ ++- ..+..|-.|..++..
T Consensus 88 ~~~ik~~ll~~l~~~~~~v----~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~------~~~-~~~~~r~~al~~l~~ 156 (462)
T 1ibr_B 88 RREVKNYVLQTLGTETYRP----SSASQCVAGIACAEIPVNQWPELIPQLVANVT------NPN-STEHMKESTLEAIGY 156 (462)
T ss_dssp HHHHHHHHHHHTTCCCSSS----CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHH------CTT-CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCchh----hHHHHHHHHHHHHhccccccHHHHHHHHHHhc------cCC-CCHHHHHHHHHHHHH
Confidence 3556677888888866543 34555555565555432 34444433332 110 134678899999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHhhhhhh
Q psy9794 197 LVHHVRQLLPMSDLIKAVHLFSKNIHDETLPTTIHTMSCKLLRNVVDFI 245 (255)
Q Consensus 197 liHhvR~~Ls~~qi~~~v~~fs~~lhD~sL~~siQ~ms~kLLlnLve~I 245 (255)
+.-..+.+.-...+..++..+.+.+.|+.....++..+++.+.++++.+
T Consensus 157 l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~ 205 (462)
T 1ibr_B 157 ICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT 205 (462)
T ss_dssp HHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTT
T ss_pred HHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9988876555566677788888888888545778888888888876654
No 28
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=22.38 E-value=2.9e+02 Score=27.33 Aligned_cols=57 Identities=9% Similarity=0.118 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhH------HHhhhhHhhHHHHHHHHhhcC----CchhhhHHHHHHHHHHHHhchhh
Q psy9794 102 TLSFLAYLVRFYQ------DILNKHSQLLVDGVLNLLLLC----PSEVTSMRKELLIAARHILQTDF 158 (255)
Q Consensus 102 tlSFLaYvlR~~~------~~i~~~~~~i~~~ii~LL~~C----P~e~~~~RKELLva~RHIlsTd~ 158 (255)
.+.+++-++++|. +.+.+..+.+...++++|..| +.+....|++.+--.-.++....
T Consensus 751 ~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p 817 (971)
T 2x1g_F 751 TLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIP 817 (971)
T ss_dssp HHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSG
T ss_pred HHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCc
Confidence 3444444554432 335555566666666777666 22333455555555555554443
No 29
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=21.98 E-value=3.8e+02 Score=23.02 Aligned_cols=104 Identities=13% Similarity=0.126 Sum_probs=69.4
Q ss_pred hHHHHHHHHhhcCCchhhhHHHHHHHHHHHHhch--hhh-----hcchhhhhhccccccccccCcccccchhhhHHHHHH
Q psy9794 123 LLVDGVLNLLLLCPSEVTSMRKELLIAARHILQT--DFR-----TNFVPHMSQLFEEDFQLGSGWTTHESLRPLVYSTLA 195 (255)
Q Consensus 123 ~i~~~ii~LL~~CP~e~~~~RKELLva~RHIlsT--d~R-----~~F~p~id~LlDErvLiG~G~t~~EtLRpLAYS~lA 195 (255)
.+...++++|.+. ....|++-+.++.++... +.+ .+++|.+=.++.+ ....+|--|...++
T Consensus 276 ~~l~~L~~ll~~~---~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~---------~~~~v~~~a~~~L~ 343 (450)
T 2jdq_A 276 SALQSLLHLLSSP---KESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQT---------AEFRTRKEAAWAIT 343 (450)
T ss_dssp THHHHHHHHTTCS---SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHH---------SCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCC---CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhc---------CCHHHHHHHHHHHH
Confidence 4666778888773 257899999999999852 222 4677777666653 13457888888888
Q ss_pred HHHHHhhCCCCHHHHH-----HHHHHhhcccCCCCchhHHHHHHHHHHHhhhhh
Q psy9794 196 DLVHHVRQLLPMSDLI-----KAVHLFSKNIHDETLPTTIHTMSCKLLRNVVDF 244 (255)
Q Consensus 196 DliHhvR~~Ls~~qi~-----~~v~~fs~~lhD~sL~~siQ~ms~kLLlnLve~ 244 (255)
.+..+- +.+++. .++....+.+.|+ ...++..++..|-|+++.
T Consensus 344 ~l~~~~----~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~ 391 (450)
T 2jdq_A 344 NATSGG----SAEQIKYLVELGCIKPLCDLLTVM--DSKIVQVALNGLENILRL 391 (450)
T ss_dssp HHHHHC----CHHHHHHHHHHTCHHHHHHGGGSS--CHHHHHHHHHHHHHHHHH
T ss_pred HHHcCC----CHHHHHHHHHCCCHHHHHHHhcCC--CHHHHHHHHHHHHHHHHh
Confidence 887542 233332 2445556666665 457888888888888764
No 30
>2hxj_A Hypothetical protein; APC83807, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.21A {Neisseria meningitidis MC58} PDB: 3mw6_A
Probab=21.55 E-value=37 Score=28.06 Aligned_cols=34 Identities=12% Similarity=0.227 Sum_probs=32.1
Q ss_pred hhhhHHHHHHHHHHHhhCCCCHHHHHHHHHHhhcc
Q psy9794 186 LRPLVYSTLADLVHHVRQLLPMSDLIKAVHLFSKN 220 (255)
Q Consensus 186 LRpLAYS~lADliHhvR~~Ls~~qi~~~v~~fs~~ 220 (255)
.+||.-...-||+-++. +++..+|.+++..|++.
T Consensus 44 ~kPLKIGI~qDL~a~l~-~lsk~~LR~ALr~yt~s 77 (144)
T 2hxj_A 44 FKPLALGIDQDLIAALP-QYDAALIARVLANHCRR 77 (144)
T ss_dssp TCCBCTTHHHHHHHHCT-TSCHHHHHHHHHHHHHS
T ss_pred CCCccccHHHHHHHHhh-ccCHHHHHHHHHHHHCC
Confidence 89999999999999998 89999999999999874
No 31
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=21.03 E-value=88 Score=23.94 Aligned_cols=51 Identities=20% Similarity=0.262 Sum_probs=32.8
Q ss_pred hhHhhHHHHHHHHhhcCCchhhhHHHHHHHHHHHHh------chhhhhcchhhhhhcccc
Q psy9794 119 KHSQLLVDGVLNLLLLCPSEVTSMRKELLIAARHIL------QTDFRTNFVPHMSQLFEE 172 (255)
Q Consensus 119 ~~~~~i~~~ii~LL~~CP~e~~~~RKELLva~RHIl------sTd~R~~F~p~id~LlDE 172 (255)
.+.+.|++.+.+-++.||++ .|=-+|=.+=+|+ +.+|+..|-+.|..+|..
T Consensus 35 ~~a~~iv~~i~~~l~~~~~~---~KL~~LYLindIl~ns~~~~~~y~~~f~~~l~~~~~~ 91 (135)
T 4fu3_A 35 KHAGPIVSVWHRELRKAKSN---RKLTFLYLANDVIQNSKRKGPEFTREFESVLVDAFSH 91 (135)
T ss_dssp GGHHHHHHHHHHHHHHSCTT---THHHHHHHHHHHHHHHTTTCSHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccc---hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 45778889999999999975 2223333333333 346777777777666543
Done!