RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9794
(255 letters)
>gnl|CDD|180321 PRK05949, PRK05949, RNA polymerase sigma factor; Validated.
Length = 327
Score = 29.8 bits (67), Expect = 1.3
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 132 LLLCPSEVTSMRKELLIAARHILQTDFRT--NFVPHMSQLFEEDFQLGSGWTTHESLRPL 189
L L PS++ +E L AR + D R N +S+L E++ + T E LR
Sbjct: 204 LELEPSQI----REYLSMARQPISLDVRVGDNQDTELSELLEDEGPSPDQYITQELLRQD 259
Query: 190 VYSTLADLVHHVRQLLPM 207
+ + LA+L R++L +
Sbjct: 260 LNNLLAELTPQQREVLTL 277
>gnl|CDD|237045 PRK12296, obgE, GTPase CgtA; Reviewed.
Length = 500
Score = 29.8 bits (68), Expect = 1.3
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 9/48 (18%)
Query: 166 MSQLFEEDFQLGSGW-------TTHESLRPLVYSTLADLVHHVRQLLP 206
+++ + + GW + E LR L ++ LA+LV R P
Sbjct: 302 LAEFVRPELE-ARGWPVFEVSAASREGLRELSFA-LAELVEEARAAEP 347
>gnl|CDD|214938 smart00958, SecA_PP_bind, SecA preprotein cross-linking domain.
The SecA ATPase is involved in the insertion and
retraction of preproteins through the plasma membrane.
This domain has been found to cross-link to preproteins,
thought to indicate a role in preprotein binding. The
pre-protein cross-linking domain is comprised of two sub
domains that are inserted within the ATPase domain.
Length = 114
Score = 28.2 bits (64), Expect = 1.6
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 6/35 (17%)
Query: 188 PLVYSTLADLVHHVRQLLPMSDLIKAVHLFSKNIH 222
L +LVHHV Q L +A LF +++
Sbjct: 53 NLYDPENIELVHHVNQAL------RAHKLFKRDVD 81
>gnl|CDD|144583 pfam01043, SecA_PP_bind, SecA preprotein cross-linking domain. The
SecA ATPase is involved in the insertion and retraction
of preproteins through the plasma membrane. This domain
has been found to cross-link to preproteins, thought to
indicate a role in preprotein binding. The pre-protein
cross-linking domain is comprised of two sub domains
that are inserted within the ATPase domain.
Length = 113
Score = 27.8 bits (63), Expect = 2.3
Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 6/27 (22%)
Query: 196 DLVHHVRQLLPMSDLIKAVHLFSKNIH 222
+L+HH+ Q L +A HLF +++
Sbjct: 60 ELLHHINQAL------RAHHLFKRDVD 80
>gnl|CDD|219817 pfam08389, Xpo1, Exportin 1-like protein. The sequences featured
in this family are similar to a region close to the
N-terminus of yeast exportin 1 (Xpo1, Crm1). This region
is found just C-terminal to an importin-beta N-terminal
domain (pfam03810) in many members of this family.
Exportin 1 is a nuclear export receptor that interacts
with leucine-rich nuclear export signal (NES) sequences,
and Ran-GTP, and is involved in translocation of
proteins out of the nucleus.
Length = 147
Score = 28.4 bits (64), Expect = 2.5
Identities = 17/93 (18%), Positives = 37/93 (39%), Gaps = 6/93 (6%)
Query: 112 FYQDILN--KHSQLLVDGVLNLLLLCPSEVTSMRKELLIAAR-HILQTDFRTNFVPHMSQ 168
F+ D+++ S + +L +L + P E+ + L R + L+ R+ P + +
Sbjct: 27 FFPDLVSLLSSSPSGCELLLRILKVLPEEIFDFSRTPLTQQRRNRLKDLLRSQM-PQILE 85
Query: 169 LFEEDFQLGSGWTTHESLRPLVYSTLADLVHHV 201
L + L + + H L L + +
Sbjct: 86 LLLQ--ILENSVSAHSELLSATLKCLGSWLSWI 116
>gnl|CDD|238865 cd01827, sialate_O-acetylesterase_like1, sialate
O-acetylesterase_like family of the SGNH hydrolases, a
diverse family of lipases and esterases. The tertiary
fold of the enzyme is substantially different from that
of the alpha/beta hydrolase family and unique among all
known hydrolases; its active site closely resembles the
Ser-His-Asp(Glu) triad found in other serine hydrolases.
Length = 188
Score = 28.6 bits (64), Expect = 2.6
Identities = 14/59 (23%), Positives = 20/59 (33%), Gaps = 9/59 (15%)
Query: 54 YKENVKKDLEEFIPIILKTVNLKPPIDFVTAPEIYK--------EIYVDFIGAQIKTLS 104
YK++ KKD E I + + KP I Y I I I ++
Sbjct: 87 YKDDFKKDYETMIDSF-QALPSKPKIYICYPIPAYYGDGGFINDNIIKKEIQPMIDKIA 144
>gnl|CDD|181394 PRK08338, PRK08338, 2-oxoglutarate ferredoxin oxidoreductase
subunit gamma; Validated.
Length = 170
Score = 28.0 bits (62), Expect = 3.3
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 46 IIVLVYQLYKENVKKDLEEFIPIILKTVNLKPPIDFVTAP 85
++V ++QL E K L+E +I+ T +KP D++ AP
Sbjct: 67 VLVALHQLGYETAKSSLKEDGLLIIDTDLVKPDRDYIGAP 106
>gnl|CDD|201077 pfam00201, UDPGT, UDP-glucoronosyl and UDP-glucosyl transferase.
Length = 500
Score = 28.5 bits (64), Expect = 3.9
Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 17/90 (18%)
Query: 127 GVLNLLLLCPSEVTSMRKELLIAARHILQTDFR--------------TNFVPHMSQLFEE 172
G+L L+ EVT +R I L ++ + F + F E
Sbjct: 18 GILLELVQRGHEVTVLRPSASILIGPALPSNLKFETYPTSYTKEELENLFPKRVMNWFME 77
Query: 173 DFQLGSGWTTHESLRP---LVYSTLADLVH 199
+ G+ W+ +L+ + +LV
Sbjct: 78 AAEAGTVWSYFSALQEYSDGARVSCKELVG 107
>gnl|CDD|214937 smart00957, SecA_DEAD, SecA DEAD-like domain. SecA protein binds
to the plasma membrane where it interacts with proOmpA
to support translocation of proOmpA through the
membrane. SecA protein achieves this translocation, in
association with SecY protein, in an ATP dependent
manner. This domain represents the N-terminal
ATP-dependent helicase domain, which is related to the.
Length = 380
Score = 28.2 bits (64), Expect = 4.0
Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 6/27 (22%)
Query: 196 DLVHHVRQLLPMSDLIKAVHLFSKNIH 222
+L+HHV Q L +A +LF +++
Sbjct: 283 ELLHHVNQAL------RAHYLFKRDVD 303
>gnl|CDD|180963 PRK07405, PRK07405, RNA polymerase sigma factor SigD; Validated.
Length = 317
Score = 28.2 bits (63), Expect = 4.9
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 6/76 (7%)
Query: 132 LLLCPSEVTSMRKELLIAARHILQTDFRT--NFVPHMSQLFEEDFQLGSGWTTHESLRPL 189
L L P +V +E L AR L D R N + +L E+ + T SL+
Sbjct: 194 LELTPKQV----REYLERARQPLSLDLRVGDNQDTELGELLEDTGASPEDFATQSSLQLD 249
Query: 190 VYSTLADLVHHVRQLL 205
+ + DL ++++
Sbjct: 250 LERLMEDLTPQQKEVI 265
>gnl|CDD|217337 pfam03050, DDE_Tnp_IS66, Transposase IS66 family. Transposase
proteins are necessary for efficient DNA transposition.
This family includes IS66 from Agrobacterium
tumefaciens.
Length = 277
Score = 27.6 bits (62), Expect = 5.9
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 192 STLADLVHHVRQLL-PMSDLIKAVHLFSKNIH-DET 225
TLA+ V +LL P+ D ++ L S +H DET
Sbjct: 40 GTLANWVGRAAELLEPLYDALRERLLASPVLHADET 75
>gnl|CDD|234709 PRK00275, glnD, PII uridylyl-transferase; Provisional.
Length = 895
Score = 28.1 bits (63), Expect = 6.4
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 146 LLIAARHILQTDFRTNFVPHMSQLFEEDFQLGSGWTTHESLR 187
LL RH++ FR + + LF E F+ G H +LR
Sbjct: 392 LLREHRHLIDDAFRND--IRNTSLFIELFKCPIG--IHRNLR 429
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.140 0.407
Gapped
Lambda K H
0.267 0.0863 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,159,847
Number of extensions: 1276995
Number of successful extensions: 1400
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1398
Number of HSP's successfully gapped: 25
Length of query: 255
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 160
Effective length of database: 6,723,972
Effective search space: 1075835520
Effective search space used: 1075835520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (25.9 bits)