RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9794
(255 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.8 bits (121), Expect = 2e-07
Identities = 48/238 (20%), Positives = 82/238 (34%), Gaps = 78/238 (32%)
Query: 63 EEFIPIILKTVNLKPPIDFVTA---PEIYKEIYVDFIGAQIKTLSFLAYLVRFYQDILNK 119
E+F K L P + A P E+ F+G +++ LV
Sbjct: 35 EQF----NKI--LPEPTEGFAADDEPTTPAELVGKFLG-------YVSSLVE-------P 74
Query: 120 HSQLLVDGVLNLLL-------LCPSEVTSMRKEL-------LIAARHILQTDFRTNFV-- 163
D VLNL L L +++ ++ +L L+ + +++ +
Sbjct: 75 SKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAK 134
Query: 164 -----PHMSQLFE----EDFQL-----GSGWTTH--ESLRPLVYST----LADLVHHVRQ 203
S LF + QL G G T E LR L Y T + DL+ +
Sbjct: 135 RPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDL-YQTYHVLVGDLIKFSAE 193
Query: 204 LLPMSDLIKAVH----LFSKNI-------HDETLPTTIH----TMSCKLLRNVVDFIH 246
L S+LI+ +F++ + + P + +SC L+ V+ H
Sbjct: 194 TL--SELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLI-GVIQLAH 248
Score = 41.2 bits (96), Expect = 3e-04
Identities = 43/223 (19%), Positives = 65/223 (29%), Gaps = 87/223 (39%)
Query: 86 EIYKEIYVDFIGAQIKTLSFLAYLV----RFYQDILNKHS-------------------- 121
+ Y + D I +TLS L + + LN
Sbjct: 178 QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPIS 237
Query: 122 -------QL---LVDGVLNLLLLCPSEV------TSMRKELLIAARHILQTD----FRTN 161
QL +V LL P E+ + + L+ A I +TD F +
Sbjct: 238 CPLIGVIQLAHYVV--TAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVS 295
Query: 162 FVPHMSQLFEEDFQLGSGWTTHE-----SLRPLVYSTLADLVHH----------VRQLLP 206
++ LF G +E SL P S L D + + + L
Sbjct: 296 VRKAITVLF------FIGVRCYEAYPNTSLPP---SILEDSLENNEGVPSPMLSISN-LT 345
Query: 207 MSDLIKAVHLFSKNIHDETLPTT--IHTMSCKLLRN-----VV 242
+ V+ N H LP + +S L N VV
Sbjct: 346 QEQVQDYVNKT--NSH---LPAGKQVE-IS---LVNGAKNLVV 379
Score = 37.0 bits (85), Expect = 0.006
Identities = 38/261 (14%), Positives = 73/261 (27%), Gaps = 101/261 (38%)
Query: 23 IGFQI-RIFPRGYQSLKSMQE-------LPLIIVLVYQLYKENVKKDLEEF--------- 65
IG + +P +++ +P ++ + L +E V+ + +
Sbjct: 306 IGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQ 365
Query: 66 IPIILKTVNLK-------PPID---FVT------APEIYKEIYVDFIGAQIK-TLSFLAY 108
+ I L VN PP AP + + F ++K + FL
Sbjct: 366 VEISL--VNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPV 423
Query: 109 LVRFYQDILNKHSQLLVDGVLNLLLLCPSEVTSMRKELLIAARHILQTDFRTNFVPHMSQ 168
F HS LLV A ++ D
Sbjct: 424 ASPF-------HSHLLVP-----------------------ASDLINKD----------- 442
Query: 169 LFEEDFQLGSGWTTHESLR-PLVYSTL--ADLVHHVRQLLPMSDLIKAVHLFSKNIH-DE 224
L + + + ++ P VY T +DL + ++ + + +
Sbjct: 443 LVKNNVSF-----NAKDIQIP-VYDTFDGSDLRVLSGSISE--RIVDC--IIRLPVKWET 492
Query: 225 TLPTTI-HTMSCKLLRNVVDF 244
T H ++DF
Sbjct: 493 TTQFKATH---------ILDF 504
Score = 33.1 bits (75), Expect = 0.088
Identities = 27/171 (15%), Positives = 51/171 (29%), Gaps = 66/171 (38%)
Query: 69 ILKTVNLKPPIDFVTAPEIYKEIYVDFIGAQIKTLS--FLAYLVRFYQDILNKHSQLLVD 126
IL V P + + F G + K + + A + D K ++ +
Sbjct: 1661 ILDIVINNP-----------VNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKE 1709
Query: 127 --------------GVLNL-------LLLCPSEVTSMRKELLIAARHILQTDFRTNFVPH 165
G+L+ L L E + + ++ ++ D F H
Sbjct: 1710 INEHSTSYTFRSEKGLLSATQFTQPALTLM--EKAAFE---DLKSKGLIPAD--ATFAGH 1762
Query: 166 MSQLFEEDFQLGSGWTTHESLRPLVYSTLADLVHHVRQLLPMSDLIKAVHL 216
S LG E Y+ LA + ++ + L++ V
Sbjct: 1763 -S--------LG------E------YAALA----SLADVMSIESLVEVVFY 1788
Score = 30.8 bits (69), Expect = 0.53
Identities = 22/81 (27%), Positives = 31/81 (38%), Gaps = 13/81 (16%)
Query: 185 SLRPLVYSTLADLVHHVRQLLPMSDLIKAVHL---FSKNIHDETL-------PTTIHTMS 234
S RPL S L H + L+P + A L F+K + + T PTT +
Sbjct: 5 STRPLTLS-HGSLEHVL--LVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELV 61
Query: 235 CKLLRNVVDFIHTKNQAEIDQ 255
K L V + + DQ
Sbjct: 62 GKFLGYVSSLVEPSKVGQFDQ 82
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 45.2 bits (106), Expect = 1e-05
Identities = 45/260 (17%), Positives = 86/260 (33%), Gaps = 81/260 (31%)
Query: 44 PLIIVLVYQLYK------ENVKK-DLEEFIPIILKTVN-LKPPIDFVTAPEIYKEIYVDF 95
P + ++ + + +N K + ++ II ++N L+P Y++++
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP--------AEYRKMFDRL 378
Query: 96 I----GAQI--KTLSFLAYLVRFY--QDILNK-HSQLLVDG----------VLNLLLLCP 136
A I LS + + V ++NK H LV+ + L L
Sbjct: 379 SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK 438
Query: 137 SE-VTSMRKELLIAARHILQTDFRTNFVP-------------HMSQ--------LFEE-- 172
E ++ + ++ +I +T + +P H+ LF
Sbjct: 439 LENEYALHRS-IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF 497
Query: 173 -DF--------QLGSGWTTHESLRPLVYSTLADLV---HHVRQLLPMSD-LIKAVHLFSK 219
DF + W S+ TL L ++ P + L+ A+ F
Sbjct: 498 LDFRFLEQKIRHDSTAWNASGSILN----TLQQLKFYKPYICDNDPKYERLVNAILDFLP 553
Query: 220 NIHDETLPTTIHTMSCKLLR 239
+E L I + LLR
Sbjct: 554 K-IEENL---ICSKYTDLLR 569
Score = 43.3 bits (101), Expect = 5e-05
Identities = 40/278 (14%), Positives = 86/278 (30%), Gaps = 74/278 (26%)
Query: 7 RDK-FRDQSSFVKRNCSIG---FQIRIFPRGYQSLKSMQELPLIIV----------LVYQ 52
RD+ + D F K N S ++R Q+L ++ +++ +
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLR------QALLELRPAKNVLIDGVLGSGKTWVALD 169
Query: 53 LYKE--------------NVKK-DLEEFIPIILKTVNLKPPIDFVTAPEIYKEIYVDFIG 97
+ N+K + E + +L+ + + ++ + + I +
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 98 AQIKTLSFLAYLVRFYQDILNKHSQLLVDGVLNLLLL------CPSEVTSMRKELLIAAR 151
Q A L R + ++ L++ V N C +T+ R
Sbjct: 230 IQ-------AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT---------R 273
Query: 152 HILQTDFRTNFVPHMSQLFEEDFQLGSGWTTHESLRPL---VYSTLADLVHHVRQLLPMS 208
TDF + + + + T E L + DL V P
Sbjct: 274 FKQVTDFLSA--ATTTHISLDHHS--MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR- 328
Query: 209 DLIKAVHLFSKNIHDETLPTTIH---TMSCKLLRNVVD 243
+ + +++I D T ++C L +++
Sbjct: 329 ----RLSIIAESIRDG--LATWDNWKHVNCDKLTTIIE 360
Score = 42.5 bits (99), Expect = 8e-05
Identities = 38/285 (13%), Positives = 75/285 (26%), Gaps = 94/285 (32%)
Query: 47 IVLVYQLYKENVKKDL-----EEFIPIILKTVNLKPPIDFVTAPEIYKEIYVDFIGAQIK 101
I+ V++ + + ++ IL + + + + F K
Sbjct: 21 ILSVFE---DAFVDNFDCKDVQDMPKSILSKEEID---HIIMSKDAVSGTLRLFWTLLSK 74
Query: 102 TLSFLAYLVRFYQDILNKHSQLLVDGVLNLLLLCPSEVTSMRKELLIAARHILQTD---F 158
+ +F +++L + + L+ + SM + I R L D F
Sbjct: 75 QEEMVQ---KFVEEVLRINYKFLMSPIKT-----EQRQPSMMTRMYIEQRDRLYNDNQVF 126
Query: 159 RTNFVP----------HMSQLFEEDF-----QLGSG-----------------------W 180
V + +L LGSG W
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW 186
Query: 181 -------TTHESLRPLV---------YSTLADLVHHVRQLLPMSDLIKAV-HLFSKNIHD 223
+ L L +++ +D H L + + + L ++
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD--HSSNIKLRIHSIQAELRRLLKSKPYE 244
Query: 224 ETL--------PTTIHTM--SCKLL-----RNVVDFIHTKNQAEI 253
L + SCK+L + V DF+ I
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI 289
Score = 27.1 bits (59), Expect = 8.2
Identities = 15/119 (12%), Positives = 34/119 (28%), Gaps = 23/119 (19%)
Query: 152 HILQTDFRTN--------FVPHMSQLFEEDFQLGSGWTTHESLRPLVYSTLADLV----H 199
H DF T + F ++F + + ++ D +
Sbjct: 3 HHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKD---VQDMPKSILSKEEIDHIIMSKD 59
Query: 200 HVRQLLPMSDLI-----KAVHLFSKNIHDET---LPTTIHTMSCKLLRNVVDFIHTKNQ 250
V L + + + V F + + L + I T + +I +++
Sbjct: 60 AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR 118
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.2 bits (77), Expect = 0.015
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 22/49 (44%)
Query: 55 KENVKKDLEEFIPIILKTVNLKP--PIDFVTAPEIYKEIYVDFIGAQIK 101
K+ +KK L+ +LK D +AP + I A ++
Sbjct: 19 KQALKK-LQA---------SLKLYAD-D--SAPALA-------IKATME 47
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.6 bits (63), Expect = 1.5
Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 11/41 (26%)
Query: 25 FQIRIFPRGYQSLKSMQELPLIIVLVYQLYKENVKKDLEEF 65
+ R+ S QE +E KKDLEE+
Sbjct: 94 QRKRLQELDAASKVMEQEW-----------REKAKKDLEEW 123
>3nwo_A PIP, proline iminopeptidase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, mycobac smegmatis; 1.90A {Mycobacterium
smegmatis}
Length = 330
Score = 27.3 bits (61), Expect = 4.7
Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 7/52 (13%)
Query: 161 NFVPHMSQLFEEDF-------QLGSGWTTHESLRPLVYSTLADLVHHVRQLL 205
N+V +++ L +E Q+G G +TH P + T V +
Sbjct: 69 NYVANIAALADETGRTVIHYDQVGCGNSTHLPDAPADFWTPQLFVDEFHAVC 120
>1us7_B HSP90 CO-chaperone CDC37; chaperone CO-chaperone regulation,
ATP-binding, H shock,; 2.3A {Homo sapiens} SCOP:
a.205.1.1 PDB: 2k5b_B 2w0g_A
Length = 265
Score = 26.7 bits (58), Expect = 7.0
Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Query: 71 KTVNLKPPIDFVTAPEIYKEIYVDFIGAQIKTLSFLAYLVRFY--QDILNKHSQLLVDGV 128
VN KP + E+ ++ + F+ K + L R+ Q L+ + L+ +
Sbjct: 14 SMVNTKPEKTEEDSEEVREQKHKTFVEKYEKQIKHFGMLRRWDDSQKYLSDNVHLVCEET 73
Query: 129 LNLLLL 134
N L++
Sbjct: 74 ANYLVI 79
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.140 0.407
Gapped
Lambda K H
0.267 0.0693 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,891,075
Number of extensions: 230554
Number of successful extensions: 503
Number of sequences better than 10.0: 1
Number of HSP's gapped: 500
Number of HSP's successfully gapped: 17
Length of query: 255
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 164
Effective length of database: 4,160,982
Effective search space: 682401048
Effective search space used: 682401048
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (25.4 bits)