RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9794
         (255 letters)



>d1znna1 c.1.2.6 (A:18-271) Pyridoxal biosynthesis lyase PdxS
           {Bacillus stearothermophilus [TaxId: 1422]}
          Length = 254

 Score = 25.9 bits (57), Expect = 4.3
 Identities = 16/71 (22%), Positives = 25/71 (35%), Gaps = 10/71 (14%)

Query: 137 SEVTSMRKELLIAARHILQTDFRTNFVPHMSQLFEEDFQLGSGWTTHESLRPL---VYST 193
           SEV +   E      HI +  F   FV     L E   ++         LR         
Sbjct: 87  SEVLTPADE----EFHIDKRQFTVPFVCGCRDLGEAARRI---AEGASMLRTKGEPGTGN 139

Query: 194 LADLVHHVRQL 204
           + + V H+R++
Sbjct: 140 IVEAVRHMRKV 150


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.140    0.407 

Gapped
Lambda     K      H
   0.267   0.0666    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 942,419
Number of extensions: 43736
Number of successful extensions: 116
Number of sequences better than 10.0: 1
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 6
Length of query: 255
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 172
Effective length of database: 1,268,006
Effective search space: 218097032
Effective search space used: 218097032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (23.9 bits)