BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9795
(337 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WA5|C Chain C, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 960
Score = 167 bits (423), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 84/227 (37%), Positives = 137/227 (60%), Gaps = 1/227 (0%)
Query: 55 TENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHAS 114
+E L +ET + L +L ++ ++ ++ R+AGA+ FKN++KR W + E+ + A+
Sbjct: 23 SERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKW-VDENGNHLLPAN 81
Query: 115 DREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIIN 174
+ E IK I+ LM++ P +Q Q+ +A + I SDFPD+WP+L++D+ ++ D
Sbjct: 82 NVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNK 141
Query: 175 GVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFTELFKATINLVGEHKDNPTALKV 234
GVL AHS+FKR+R F+S +L+ EIK VLD F PF L K + +++N +L +
Sbjct: 142 GVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNI 201
Query: 235 IYNSLVVSCKIFYSLNFQDLPEYFEDNMVVWMPALHNLLVTDVPCLR 281
+++ L+V K++Y N QD+PE+FEDN+ V M H L P L
Sbjct: 202 LFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLE 248
>pdb|1Z3H|A Chain A, The Exportin Cse1 In Its Cargo-free, Cytoplasmic State
pdb|1Z3H|B Chain B, The Exportin Cse1 In Its Cargo-free, Cytoplasmic State
Length = 968
Score = 167 bits (423), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 84/227 (37%), Positives = 137/227 (60%), Gaps = 1/227 (0%)
Query: 55 TENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHAS 114
+E L +ET + L +L ++ ++ ++ R+AGA+ FKN++KR W + E+ + A+
Sbjct: 23 SERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKW-VDENGNHLLPAN 81
Query: 115 DREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIIN 174
+ E IK I+ LM++ P +Q Q+ +A + I SDFPD+WP+L++D+ ++ D
Sbjct: 82 NVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNK 141
Query: 175 GVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFTELFKATINLVGEHKDNPTALKV 234
GVL AHS+FKR+R F+S +L+ EIK VLD F PF L K + +++N +L +
Sbjct: 142 GVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNI 201
Query: 235 IYNSLVVSCKIFYSLNFQDLPEYFEDNMVVWMPALHNLLVTDVPCLR 281
+++ L+V K++Y N QD+PE+FEDN+ V M H L P L
Sbjct: 202 LFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLE 248
>pdb|3GJX|A Chain A, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|D Chain D, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3NBY|A Chain A, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|D Chain D, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|A Chain A, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|D Chain D, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|A Chain A, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|D Chain D, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC1|A Chain A, Crystal Structure Of The Crm1-Rangtp Complex
Length = 1073
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 29/142 (20%), Positives = 62/142 (43%), Gaps = 13/142 (9%)
Query: 82 DMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIKGLILHLMLTSPEAIQKQ---- 137
+M + G +N +K W ++ P ++ + GLI+ + P ++K+
Sbjct: 74 NMNTKYYGLQILENVIKTRWKIL---PRNQCEGIKKYVVGLIIKTS-SDPTCVEKEKVYI 129
Query: 138 --LSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRYRHEFKSQK 195
L+ I K ++P WP+ I+D+V T + N ++ L +F S +
Sbjct: 130 GKLNMILVQILKQEWPKHWPTFISDIVGASRTSESLCQNNMV--ILKLLSEEVFDFSSGQ 187
Query: 196 L-WTEIKFVLDNFAKPFTELFK 216
+ + K + D+ F+++F+
Sbjct: 188 ITQVKAKHLKDSMCNEFSQIFQ 209
>pdb|3GB8|A Chain A, Crystal Structure Of Crm1SNURPORTIN-1 Complex
Length = 1071
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 10/94 (10%)
Query: 82 DMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIKGLILHLMLTSPEAIQKQ---- 137
+M + G +N +K W ++ P ++ + GLI+ + P ++K+
Sbjct: 72 NMNTKYYGLQILENVIKTRWKIL---PRNQCEGIKKYVVGLIIKTS-SDPTCVEKEKVYI 127
Query: 138 --LSDATAIIGKSDFPDKWPSLITDMVAKFGTGD 169
L+ I K ++P WP+ I+D+V T +
Sbjct: 128 GKLNMILVQILKQEWPKHWPTFISDIVGASRTSE 161
>pdb|2XWU|B Chain B, Crystal Structure Of Importin 13 - Ubc9 Complex
Length = 963
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 4/85 (4%)
Query: 85 IRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIKGLILHLMLTSPEAIQKQLSDATAI 144
I+ GA A + R W D P + S + + I + + + +L A A
Sbjct: 74 IQYFGASALHIKISRYW---SDIPTDQYESLKAQLFTQITRFA-SGSKIVLTRLCVALAS 129
Query: 145 IGKSDFPDKWPSLITDMVAKFGTGD 169
+ S PD WP + DMV F D
Sbjct: 130 LALSMMPDAWPCAVADMVRLFQAED 154
>pdb|3KRT|A Chain A, Crystal Structure Of Putative Crotonyl Coa Reductase From
Streptomyces Coelicolor A3(2)
pdb|3KRT|B Chain B, Crystal Structure Of Putative Crotonyl Coa Reductase From
Streptomyces Coelicolor A3(2)
pdb|3KRT|C Chain C, Crystal Structure Of Putative Crotonyl Coa Reductase From
Streptomyces Coelicolor A3(2)
pdb|3KRT|D Chain D, Crystal Structure Of Putative Crotonyl Coa Reductase From
Streptomyces Coelicolor A3(2)
Length = 456
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 165 FGTGDFHIINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFTELFKATINLVGE 224
FG F G T + Y HE+ ++ LW +K ++ + + E ++A L+ +
Sbjct: 327 FGASVFVTRKGGTITTCASTSGYMHEYDNRYLWMSLKRIIGSHFANYREAWEAN-RLIAK 385
Query: 225 HKDNPTALKV 234
+ +PT KV
Sbjct: 386 GRIHPTLSKV 395
>pdb|3HZZ|A Chain A, 2.4 Angstrom Crystal Structure Of Streptomyces Collinus
Crotonyl Coa CarboxylaseREDUCTASE
pdb|3HZZ|B Chain B, 2.4 Angstrom Crystal Structure Of Streptomyces Collinus
Crotonyl Coa CarboxylaseREDUCTASE
pdb|3HZZ|C Chain C, 2.4 Angstrom Crystal Structure Of Streptomyces Collinus
Crotonyl Coa CarboxylaseREDUCTASE
pdb|3HZZ|D Chain D, 2.4 Angstrom Crystal Structure Of Streptomyces Collinus
Crotonyl Coa CarboxylaseREDUCTASE
Length = 467
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 187 YRHEFKSQKLWTEIKFVLDNFAKPFTELFKATINLVGEHKDNPTALKV 234
Y HE+ ++ LW +K ++ + + E ++A L+ + K +PT K
Sbjct: 367 YMHEYDNRYLWMSLKRIIGSHFANYREAYEAN-RLIAKGKIHPTLSKT 413
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,989,362
Number of Sequences: 62578
Number of extensions: 413126
Number of successful extensions: 804
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 792
Number of HSP's gapped (non-prelim): 15
length of query: 337
length of database: 14,973,337
effective HSP length: 99
effective length of query: 238
effective length of database: 8,778,115
effective search space: 2089191370
effective search space used: 2089191370
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)