Query psy9795
Match_columns 337
No_of_seqs 243 out of 1237
Neff 7.3
Searched_HMMs 46136
Date Fri Aug 16 19:55:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9795.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9795hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1992|consensus 100.0 5.5E-50 1.2E-54 403.3 27.2 288 36-330 6-297 (960)
2 KOG1991|consensus 100.0 6.6E-46 1.4E-50 380.5 26.3 263 39-313 8-293 (1010)
3 COG5656 SXM1 Importin, protein 100.0 3.1E-33 6.6E-38 279.9 24.7 262 32-311 4-296 (970)
4 COG5657 CSE1 CAS/CSE protein i 100.0 6.7E-33 1.5E-37 283.1 22.8 265 41-317 10-275 (947)
5 KOG2274|consensus 99.9 2.5E-26 5.5E-31 234.6 17.9 262 35-329 4-279 (1005)
6 KOG1993|consensus 99.9 1.2E-23 2.5E-28 212.7 23.5 231 38-275 3-248 (978)
7 KOG2171|consensus 99.9 4.8E-20 1E-24 193.5 22.1 146 30-187 3-149 (1075)
8 PF08506 Cse1: Cse1; InterPro 99.8 3.3E-19 7.1E-24 173.7 13.1 140 183-328 1-144 (370)
9 KOG2023|consensus 99.8 2.5E-18 5.4E-23 171.8 13.0 169 34-209 12-181 (885)
10 KOG1241|consensus 99.7 1.2E-15 2.6E-20 154.6 13.9 150 41-190 7-164 (859)
11 COG5215 KAP95 Karyopherin (imp 99.5 2E-12 4.4E-17 128.1 21.9 156 30-188 3-166 (858)
12 PF03810 IBN_N: Importin-beta 99.5 8.6E-14 1.9E-18 105.4 7.7 75 55-129 1-77 (77)
13 COG5101 CRM1 Importin beta-rel 99.3 3.4E-10 7.4E-15 113.6 21.5 194 47-260 26-232 (1053)
14 PF08389 Xpo1: Exportin 1-like 99.1 3.9E-09 8.5E-14 89.0 13.9 134 131-275 1-137 (148)
15 KOG2020|consensus 98.9 5.1E-08 1.1E-12 105.0 16.1 163 48-220 25-197 (1041)
16 KOG2021|consensus 98.2 0.00018 3.9E-09 74.4 20.9 116 46-168 16-140 (980)
17 KOG1410|consensus 98.1 0.00063 1.4E-08 69.9 20.2 133 46-187 17-159 (1082)
18 KOG2022|consensus 97.7 0.00077 1.7E-08 71.0 14.5 113 48-168 21-136 (982)
19 KOG2081|consensus 97.3 0.016 3.5E-07 58.7 17.4 125 53-187 2-131 (559)
20 PF10508 Proteasom_PSMB: Prote 95.0 3.6 7.8E-05 42.1 20.1 142 32-186 77-232 (503)
21 KOG1992|consensus 94.7 4.5 9.8E-05 43.4 19.7 33 293-325 371-403 (960)
22 PF04510 DUF577: Family of unk 94.5 3.1 6.7E-05 36.5 17.4 137 118-275 3-145 (174)
23 PTZ00429 beta-adaptin; Provisi 93.7 12 0.00026 40.3 24.7 138 46-186 43-209 (746)
24 PF12755 Vac14_Fab1_bd: Vacuol 92.7 1.4 3E-05 34.9 9.4 74 152-244 23-96 (97)
25 cd00020 ARM Armadillo/beta-cat 92.5 0.41 8.8E-06 37.7 6.3 106 66-184 6-119 (120)
26 KOG2171|consensus 92.2 22 0.00048 39.5 20.5 147 32-186 386-550 (1075)
27 PF01602 Adaptin_N: Adaptin N 92.2 4.4 9.6E-05 41.0 14.8 149 24-186 67-222 (526)
28 PF05918 API5: Apoptosis inhib 92.0 17 0.00037 37.8 18.7 49 121-170 62-110 (556)
29 PF12348 CLASP_N: CLASP N term 91.4 4 8.6E-05 36.6 12.1 137 21-166 75-220 (228)
30 PRK09687 putative lyase; Provi 90.8 3.4 7.4E-05 39.0 11.4 116 46-183 65-186 (280)
31 PF12719 Cnd3: Nuclear condens 90.8 15 0.00032 34.8 15.9 155 34-190 25-186 (298)
32 PF01602 Adaptin_N: Adaptin N 90.7 19 0.0004 36.4 17.6 123 46-183 53-179 (526)
33 PF13646 HEAT_2: HEAT repeats; 90.7 5.6 0.00012 29.6 10.7 85 70-180 2-87 (88)
34 PF12717 Cnd1: non-SMC mitotic 90.5 7.1 0.00015 34.0 12.4 93 83-187 2-94 (178)
35 KOG2023|consensus 90.4 12 0.00026 39.5 15.5 178 117-314 661-858 (885)
36 KOG1241|consensus 90.4 8.8 0.00019 40.9 14.7 208 21-251 24-253 (859)
37 PF02985 HEAT: HEAT repeat; I 88.6 1.2 2.6E-05 27.2 4.4 30 157-186 1-30 (31)
38 KOG1993|consensus 88.4 34 0.00073 37.0 17.1 215 32-269 480-745 (978)
39 KOG1824|consensus 87.3 13 0.00028 40.7 13.6 135 30-181 855-991 (1233)
40 KOG1242|consensus 87.0 40 0.00087 35.1 16.6 202 65-281 211-432 (569)
41 PRK09687 putative lyase; Provi 86.0 18 0.00039 34.1 12.8 122 45-183 33-155 (280)
42 KOG1991|consensus 85.6 62 0.0014 35.7 19.0 92 65-166 408-512 (1010)
43 PF08506 Cse1: Cse1; InterPro 85.5 14 0.0003 36.5 12.2 30 294-323 221-250 (370)
44 PF11865 DUF3385: Domain of un 84.9 6.5 0.00014 33.9 8.5 39 152-190 6-47 (160)
45 PF12717 Cnd1: non-SMC mitotic 82.8 15 0.00033 31.9 10.2 108 48-168 1-113 (178)
46 PF10508 Proteasom_PSMB: Prote 82.3 16 0.00035 37.4 11.6 128 48-186 51-190 (503)
47 PF13925 Katanin_con80: con80 81.9 33 0.00072 29.6 11.9 54 137-190 45-103 (164)
48 PRK13800 putative oxidoreducta 81.8 16 0.00034 40.3 11.9 110 45-182 631-740 (897)
49 PTZ00429 beta-adaptin; Provisi 80.3 92 0.002 33.7 19.3 65 123-189 373-437 (746)
50 PF12830 Nipped-B_C: Sister ch 79.3 10 0.00023 33.4 7.9 71 119-190 9-79 (187)
51 PRK13800 putative oxidoreducta 79.2 20 0.00042 39.6 11.6 46 45-96 724-769 (897)
52 COG5096 Vesicle coat complex, 77.4 1.1E+02 0.0024 33.1 17.0 63 123-186 132-196 (757)
53 PF12348 CLASP_N: CLASP N term 77.1 10 0.00023 33.9 7.5 105 78-188 16-126 (228)
54 cd00020 ARM Armadillo/beta-cat 76.9 18 0.00039 27.9 8.0 72 66-146 48-119 (120)
55 PF05918 API5: Apoptosis inhib 76.7 78 0.0017 33.0 14.3 177 26-211 86-277 (556)
56 PF12755 Vac14_Fab1_bd: Vacuol 76.5 16 0.00035 28.8 7.4 68 117-185 26-96 (97)
57 PF13646 HEAT_2: HEAT repeats; 76.3 6.5 0.00014 29.2 5.0 55 122-183 3-58 (88)
58 PF09324 DUF1981: Domain of un 76.1 18 0.00039 27.8 7.5 52 131-182 31-85 (86)
59 PF08167 RIX1: rRNA processing 75.3 43 0.00093 28.9 10.5 105 71-189 29-147 (165)
60 PF01603 B56: Protein phosphat 73.8 1E+02 0.0022 30.8 14.2 166 12-187 96-286 (409)
61 KOG1059|consensus 73.0 1.1E+02 0.0024 32.8 14.2 76 82-170 157-232 (877)
62 KOG1059|consensus 71.7 46 0.00099 35.6 11.1 114 111-253 137-250 (877)
63 PF03224 V-ATPase_H_N: V-ATPas 71.6 39 0.00084 32.1 10.2 168 66-252 54-228 (312)
64 PF13513 HEAT_EZ: HEAT-like re 70.9 3 6.6E-05 28.6 1.8 51 133-183 2-55 (55)
65 PLN03200 cellulose synthase-in 70.6 2.6E+02 0.0055 34.1 18.8 135 36-188 613-767 (2102)
66 PF08167 RIX1: rRNA processing 69.8 72 0.0016 27.4 12.0 102 153-275 22-127 (165)
67 PF10521 DUF2454: Protein of u 69.8 62 0.0013 30.4 11.0 53 136-188 98-151 (282)
68 COG5656 SXM1 Importin, protein 68.6 1.8E+02 0.0039 31.6 15.2 156 16-186 355-529 (970)
69 KOG1062|consensus 68.6 96 0.0021 33.6 12.8 76 110-188 342-417 (866)
70 PF02985 HEAT: HEAT repeat; I 67.5 17 0.00036 22.0 4.5 28 121-148 3-30 (31)
71 KOG2956|consensus 63.3 1.8E+02 0.0039 29.7 18.5 157 32-209 283-451 (516)
72 PF14500 MMS19_N: Dos2-interac 63.0 1.3E+02 0.0029 28.0 17.9 100 82-188 12-114 (262)
73 PF01465 GRIP: GRIP domain; I 61.9 18 0.0004 24.4 4.2 35 114-148 3-37 (46)
74 PF04336 DUF479: Protein of un 60.4 32 0.00069 27.4 6.1 71 96-189 4-74 (106)
75 PLN03200 cellulose synthase-in 60.3 2.8E+02 0.006 33.8 15.7 114 65-187 607-725 (2102)
76 PF00514 Arm: Armadillo/beta-c 59.7 23 0.00049 22.7 4.3 28 157-184 13-40 (41)
77 KOG1062|consensus 59.5 2.7E+02 0.0058 30.4 14.8 137 48-186 47-209 (866)
78 PF13251 DUF4042: Domain of un 58.8 50 0.0011 29.2 7.6 131 134-275 2-156 (182)
79 PF10274 ParcG: Parkin co-regu 56.6 55 0.0012 29.0 7.4 66 122-187 42-111 (183)
80 KOG0414|consensus 56.6 3.5E+02 0.0076 30.9 15.0 201 68-313 920-1139(1251)
81 PF08064 UME: UME (NUC010) dom 55.3 1E+02 0.0022 24.6 8.2 73 134-215 31-105 (107)
82 KOG0166|consensus 54.9 1.3E+02 0.0027 31.2 10.6 116 45-170 162-293 (514)
83 COG5096 Vesicle coat complex, 53.9 2.7E+02 0.0059 30.2 13.3 123 48-185 32-156 (757)
84 PF04826 Arm_2: Armadillo-like 52.8 2E+02 0.0042 26.8 14.5 131 39-186 19-164 (254)
85 PF12460 MMS19_C: RNAPII trans 52.8 1.3E+02 0.0027 29.9 10.3 73 113-186 310-395 (415)
86 KOG0213|consensus 52.0 1.3E+02 0.0029 32.6 10.3 120 127-270 562-687 (1172)
87 PF13001 Ecm29: Proteasome sta 51.8 1.9E+02 0.004 29.7 11.5 85 33-131 24-115 (501)
88 smart00755 Grip golgin-97, Ran 51.5 29 0.00063 23.6 3.8 34 115-149 3-36 (46)
89 cd00197 VHS_ENTH_ANTH VHS, ENT 48.1 64 0.0014 25.7 6.1 39 149-187 30-68 (115)
90 TIGR02270 conserved hypothetic 47.8 2.1E+02 0.0045 28.6 10.8 109 46-183 97-205 (410)
91 PF12783 Sec7_N: Guanine nucle 47.6 1.8E+02 0.0038 24.8 9.5 34 156-189 73-106 (168)
92 PF03810 IBN_N: Importin-beta 47.6 83 0.0018 22.6 6.2 43 142-187 5-47 (77)
93 PF14225 MOR2-PAG1_C: Cell mor 46.7 76 0.0017 29.7 7.1 52 136-187 168-219 (262)
94 COG1698 Uncharacterized protei 46.1 59 0.0013 25.4 5.1 61 26-87 8-79 (93)
95 KOG1078|consensus 44.0 3.5E+02 0.0075 29.5 12.0 72 113-185 349-421 (865)
96 smart00185 ARM Armadillo/beta- 43.8 42 0.00092 20.7 3.6 28 157-184 13-40 (41)
97 KOG1851|consensus 43.1 4.2E+02 0.0092 31.2 13.0 117 65-189 1524-1642(1710)
98 KOG1837|consensus 42.5 1.3E+02 0.0027 35.2 9.0 54 133-187 1519-1572(1621)
99 PF14961 BROMI: Broad-minded p 42.1 2.8E+02 0.006 31.8 11.3 66 121-186 164-232 (1296)
100 PF07571 DUF1546: Protein of u 42.1 1.1E+02 0.0024 23.7 6.4 52 133-185 21-78 (92)
101 PLN03076 ARF guanine nucleotid 40.8 3.7E+02 0.0079 32.4 12.7 150 154-311 1345-1511(1780)
102 PF04826 Arm_2: Armadillo-like 40.3 3.1E+02 0.0067 25.5 12.2 138 36-189 58-209 (254)
103 PF10363 DUF2435: Protein of u 39.0 1.8E+02 0.0038 22.7 7.0 65 123-187 8-74 (92)
104 KOG2956|consensus 38.5 2.7E+02 0.0059 28.5 9.8 118 22-187 353-479 (516)
105 KOG0889|consensus 38.4 4.5E+02 0.0097 33.7 12.9 157 133-297 626-798 (3550)
106 smart00582 RPR domain present 38.1 2E+02 0.0044 22.8 8.7 84 123-220 5-88 (121)
107 PF08620 RPAP1_C: RPAP1-like, 36.2 69 0.0015 24.0 4.1 31 158-188 41-71 (73)
108 KOG0392|consensus 35.9 2.9E+02 0.0063 31.8 10.2 113 68-187 78-198 (1549)
109 KOG1949|consensus 35.5 6.2E+02 0.013 27.6 13.9 115 19-149 127-251 (1005)
110 COG1413 FOG: HEAT repeat [Ener 35.2 3.9E+02 0.0084 25.1 11.5 131 45-183 84-240 (335)
111 cd03571 ENTH_epsin ENTH domain 34.7 2E+02 0.0044 23.7 7.1 46 141-186 21-69 (123)
112 KOG0946|consensus 34.2 6.7E+02 0.015 27.6 15.6 190 59-276 114-327 (970)
113 COG5181 HSH155 U2 snRNP splice 34.0 2.7E+02 0.0059 29.7 9.2 72 117-188 603-678 (975)
114 PF10363 DUF2435: Protein of u 33.9 2.2E+02 0.0049 22.0 8.0 73 82-167 16-88 (92)
115 PF06086 Pox_A30L_A26L: Orthop 33.4 36 0.00077 31.0 2.6 48 84-131 17-64 (220)
116 PF11698 V-ATPase_H_C: V-ATPas 33.1 1.3E+02 0.0028 24.8 5.6 77 99-184 28-114 (119)
117 KOG2021|consensus 32.3 7.1E+02 0.015 27.3 14.0 83 119-211 696-781 (980)
118 KOG4224|consensus 31.6 1.1E+02 0.0024 30.4 5.7 149 21-190 131-285 (550)
119 KOG1967|consensus 30.7 4.1E+02 0.0088 29.6 10.1 99 130-251 879-982 (1030)
120 KOG2160|consensus 29.9 5.4E+02 0.012 25.2 11.3 136 43-186 132-283 (342)
121 KOG1060|consensus 29.8 5.7E+02 0.012 28.1 10.9 55 131-186 156-210 (968)
122 COG5234 CIN1 Beta-tubulin fold 29.4 3.9E+02 0.0085 29.0 9.5 69 117-191 461-529 (993)
123 KOG2274|consensus 29.3 8.4E+02 0.018 27.2 14.6 116 33-162 37-160 (1005)
124 KOG1248|consensus 28.6 9.4E+02 0.02 27.6 18.9 202 44-270 706-921 (1176)
125 PF09058 L27_1: L27_1; InterP 27.8 2E+02 0.0044 21.0 5.2 46 172-221 7-52 (64)
126 PRK04330 hypothetical protein; 27.3 3E+02 0.0064 21.5 6.3 21 44-64 24-44 (88)
127 KOG1058|consensus 26.7 8.8E+02 0.019 26.6 13.6 74 114-188 352-428 (948)
128 PLN03076 ARF guanine nucleotid 25.5 8.5E+02 0.018 29.5 12.4 102 82-187 1150-1255(1780)
129 PF04118 Dopey_N: Dopey, N-ter 25.4 3.9E+02 0.0085 25.6 8.3 80 10-100 121-203 (307)
130 PF12460 MMS19_C: RNAPII trans 25.1 6.7E+02 0.015 24.7 13.6 115 132-271 283-413 (415)
131 KOG1020|consensus 24.8 5.8E+02 0.013 30.1 10.4 71 111-182 810-881 (1692)
132 KOG1943|consensus 24.7 1.1E+03 0.023 26.9 17.8 128 43-188 479-614 (1133)
133 smart00802 UME Domain in UVSB 24.3 3.7E+02 0.0081 21.5 7.7 72 135-215 32-105 (107)
134 PF00790 VHS: VHS domain; Int 24.0 4E+02 0.0086 22.0 7.3 42 145-187 32-73 (140)
135 PF01603 B56: Protein phosphat 23.8 4.3E+02 0.0094 26.3 8.7 56 133-188 106-165 (409)
136 cd03572 ENTH_epsin_related ENT 23.7 2.7E+02 0.0059 23.0 6.0 36 152-187 34-69 (122)
137 PF12830 Nipped-B_C: Sister ch 23.5 1.3E+02 0.0028 26.4 4.4 58 41-100 14-76 (187)
138 PF12530 DUF3730: Protein of u 23.4 5.6E+02 0.012 23.2 19.1 52 134-186 100-152 (234)
139 KOG0267|consensus 23.0 2.2E+02 0.0048 30.6 6.4 71 117-187 675-745 (825)
140 PF03685 UPF0147: Uncharacteri 22.6 1.6E+02 0.0036 22.7 4.1 21 44-64 21-41 (85)
141 PF10540 Membr_traf_MHD: Munc1 22.5 3.8E+02 0.0081 22.3 6.8 10 293-302 103-113 (137)
142 PF01417 ENTH: ENTH domain; I 22.3 3.4E+02 0.0073 21.9 6.4 46 141-186 23-72 (125)
143 PF08767 CRM1_C: CRM1 C termin 21.7 7.1E+02 0.015 23.8 15.0 58 132-189 134-198 (319)
144 PF14675 FANCI_S1: FANCI solen 21.5 6.3E+02 0.014 23.1 11.2 36 133-168 44-80 (223)
145 PF05536 Neurochondrin: Neuroc 21.5 7.6E+02 0.016 25.7 10.1 108 155-278 4-112 (543)
146 KOG1020|consensus 21.3 9.9E+02 0.022 28.3 11.3 35 152-186 812-846 (1692)
147 cd00256 VATPase_H VATPase_H, r 21.2 8.6E+02 0.019 24.5 10.3 121 66-191 52-181 (429)
148 PF04078 Rcd1: Cell differenti 21.1 7E+02 0.015 23.5 10.6 128 48-186 8-169 (262)
149 PF12719 Cnd3: Nuclear condens 20.7 7E+02 0.015 23.3 12.9 73 117-190 26-98 (298)
150 KOG4224|consensus 20.7 3.7E+02 0.008 26.9 7.0 130 45-182 177-318 (550)
151 smart00638 LPD_N Lipoprotein N 20.4 2.6E+02 0.0057 28.8 6.6 32 66-97 476-508 (574)
152 KOG2259|consensus 20.4 1.1E+03 0.024 25.5 14.9 50 50-99 388-440 (823)
153 KOG1240|consensus 20.2 2E+02 0.0043 32.9 5.7 31 156-186 656-686 (1431)
154 KOG2798|consensus 20.2 6E+02 0.013 24.9 8.2 89 88-189 32-121 (369)
155 KOG2025|consensus 20.1 1.1E+03 0.025 25.6 11.4 140 32-180 41-188 (892)
No 1
>KOG1992|consensus
Probab=100.00 E-value=5.5e-50 Score=403.30 Aligned_cols=288 Identities=49% Similarity=0.829 Sum_probs=265.0
Q ss_pred HHHhhcccCCCCChhhhHHHHHHHHHHHhCCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHH
Q psy9795 36 STQGVPNHDKNIQLESRSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASD 115 (337)
Q Consensus 36 ~l~~tL~~~~spD~~~Rk~AE~~L~~~~~~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~ 115 (337)
-+.+.|..+++||+++||.||+.|++.+.|+||...+|+++.+.+.|.++|.+|+++|||+||++|.+.++....|.+++
T Consensus 6 ~l~~~l~qTl~pdps~rk~aEr~L~~~e~q~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~~ 85 (960)
T KOG1992|consen 6 TLANYLLQTLSPDPSVRKPAERALRSLEGQQNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIEED 85 (960)
T ss_pred HHHHHHHhcCCCCCccCchHHHHHHHhccCCCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCccccchhH
Confidence 34556778889999999999999999999999999999999999999999999999999999999997766557899999
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhhhhhhhhhh
Q psy9795 116 REAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRYRHEFKSQK 195 (337)
Q Consensus 116 K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~yr~~~~s~~ 195 (337)
|+.||..|+.+|.+++..|+.|++++++.|+++|||++||+|+|+++..++++|.+...|.|.+.++|+|+||+++||++
T Consensus 86 ~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~efrSda 165 (960)
T KOG1992|consen 86 REQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFPDKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRYRPEFRSDA 165 (960)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccchhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcCcccccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHhhhccccCChHHHHHhHHHHHHHHHHhhcc
Q psy9795 196 LWTEIKFVLDNFAKPFTELFKATINLVGEHKDNPTALKVIYNSLVVSCKIFYSLNFQDLPEYFEDNMVVWMPALHNLLVT 275 (337)
Q Consensus 196 l~~el~~il~~~~~~L~~lf~~l~~~~~~~~~~~~~~~~~~e~l~lilKif~~~~~~~lp~~~e~~l~~W~~~f~~iL~~ 275 (337)
++.|++.+++.|..|++.+|...+.+.+.+.++...++..++.+.++||+||+++++|+|+|||||+..||+.|+.++..
T Consensus 166 L~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~~F~k~l~~ 245 (960)
T KOG1992|consen 166 LWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMGAFHKLLTY 245 (960)
T ss_pred HHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHHHHHHHHhc
Confidence 99999999999999999999999999988888888889999999999999999999999999999999999999999999
Q ss_pred CCCCCCccchhhhhhhhccchhHHHhhhHHHHHHHH-HHhhhhh---hhhccccccccc
Q psy9795 276 DVPCLRTDSIFVNSFRRFISDVETRRRAACDFVKIL-CKYMEDK---MMGTSTAGAKDL 330 (337)
Q Consensus 276 ~~p~l~~d~~~~r~~~~~~~~~~~~k~~~~~~~~~~-~k~~~~~---~~~~~~~~~~~~ 330 (337)
+.|.+..| ++..+.++-+|.++|++++.| .||-|+. ++...++-|-.|
T Consensus 246 ~~p~le~~-------~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL 297 (960)
T KOG1992|consen 246 DNPLLESD-------EEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLL 297 (960)
T ss_pred cCcccccC-------cccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHH
Confidence 99988763 344677788999999999999 7776654 555555555443
No 2
>KOG1991|consensus
Probab=100.00 E-value=6.6e-46 Score=380.51 Aligned_cols=263 Identities=22% Similarity=0.381 Sum_probs=233.1
Q ss_pred hhcccCCCCChhhhHHHHHHHHHHHhCCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCC--CCCCCCHHHH
Q psy9795 39 GVPNHDKNIQLESRSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVED--EPDKIHASDR 116 (337)
Q Consensus 39 ~tL~~~~spD~~~Rk~AE~~L~~~~~~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~--~~~~i~~e~K 116 (337)
.++.++.+||++.|+.||++|++++++|||+..||+|+++.+++..|||+|+|||||.|.++|+..+. .+..+++++|
T Consensus 8 ~~~~~T~d~d~~~R~~AE~~L~q~~K~pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~~I~e~dk 87 (1010)
T KOG1991|consen 8 QIFRATIDSDAKERKAAEQQLNQLEKQPGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPGRPFGIPEEDK 87 (1010)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhhcCCcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCCCcCCCChHHH
Confidence 34455566778999999999999999999999999999999999999999999999999999997642 2467999999
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q psy9795 117 EAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRYRHEFKSQKL 196 (337)
Q Consensus 117 ~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~yr~~~~s~~l 196 (337)
..||++|++.++++|..+|.|+.+|+..|.++|||++||++++.+.+++++++.+.+++||.||++++|.|||+ +++.
T Consensus 88 ~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k--~~ee 165 (1010)
T KOG1991|consen 88 AVIRENILETIVQVPELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWK--KDEE 165 (1010)
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhc--cccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999995 7788
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHhhhccccCChHHH--HHhHHHHHHHHHHhhc
Q psy9795 197 WTEIKFVLDNFAKPFTELFKATINLVGEHKDNPTALKVIYNSLVVSCKIFYSLNFQDLPEYF--EDNMVVWMPALHNLLV 274 (337)
Q Consensus 197 ~~el~~il~~~~~~L~~lf~~l~~~~~~~~~~~~~~~~~~e~l~lilKif~~~~~~~lp~~~--e~~l~~W~~~f~~iL~ 274 (337)
|+++..+++.++|.+++++..+++. ++. ...+++++||||||++++.++|..+ .+.+..||++|+++++
T Consensus 166 R~~l~~~v~~~fP~il~~~~~ll~~-----~s~----~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~ 236 (1010)
T KOG1991|consen 166 RQPLGEAVEELFPDILQIFNGLLSQ-----ESY----QSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILN 236 (1010)
T ss_pred cccHHHHHHHHHHHHHHHHHhhccc-----cch----HHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHc
Confidence 8889999998888666665555442 121 2567899999999999999999988 4799999999999999
Q ss_pred cCCCC--CCcc-----------------chhhhhhhhccchhHHHhhhHHHHHHHHHH
Q psy9795 275 TDVPC--LRTD-----------------SIFVNSFRRFISDVETRRRAACDFVKILCK 313 (337)
Q Consensus 275 ~~~p~--l~~d-----------------~~~~r~~~~~~~~~~~~k~~~~~~~~~~~k 313 (337)
+|+|. +..| ++++|+|+|||++..+.++ -.+|.++|++
T Consensus 237 rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~-y~~Fa~~f~~ 293 (1010)
T KOG1991|consen 237 RPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPE-YKEFAQMFLK 293 (1010)
T ss_pred CCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchh-hHHHHHHHHH
Confidence 99994 2222 7999999999999999966 6889888877
No 3
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-33 Score=279.90 Aligned_cols=262 Identities=21% Similarity=0.362 Sum_probs=208.5
Q ss_pred hHHHHHHhhcccCCCCChhhhHHHHHHHHHHHhCCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCC--CC
Q psy9795 32 EFFCSTQGVPNHDKNIQLESRSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDE--PD 109 (337)
Q Consensus 32 ~~~~~l~~tL~~~~spD~~~Rk~AE~~L~~~~~~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~--~~ 109 (337)
+..+...+|| ++|+++|+.||++|++++++|||..+|++++++++++.+||++|+|||||.|.+.|+...+. ..
T Consensus 4 ellqcf~qTl----dada~~rt~AE~~Lk~leKqPgFv~all~i~s~de~~lnvklsAaIYfKNkI~rsWss~~d~~i~~ 79 (970)
T COG5656 4 ELLQCFLQTL----DADAGKRTIAEAMLKDLEKQPGFVMALLHICSKDEGDLNVKLSAAIYFKNKIIRSWSSKRDDGIKA 79 (970)
T ss_pred HHHHHHHHHh----ccCcchhhHHHHHHHHhhcCCcHHHHHHHHHhhccCCchhhHHHHHHHhhhhhhhhhhcccCCCCC
Confidence 3444554555 55669999999999999999999999999999999999999999999999999999874332 12
Q ss_pred CCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhhCC-CCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhhh
Q psy9795 110 KIHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFP-DKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRYR 188 (337)
Q Consensus 110 ~i~~e~K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP-~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~yr 188 (337)
-..++.|..++++++.....++...|+.+..++..|...||| +.|| |.|...+++.+++.++++.||.|+.++||.||
T Consensus 80 Dek~e~K~~lienil~v~l~sp~~tr~~l~ail~~I~seD~ps~~wg-l~p~~~nll~s~ea~~vy~gLlcl~elfkayR 158 (970)
T COG5656 80 DEKSEAKKYLIENILDVFLYSPEVTRTALNAILVNIFSEDKPSDLWG-LFPKAANLLRSSEANHVYTGLLCLEELFKAYR 158 (970)
T ss_pred cccHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccCchhhcc-cchHHHHhhcccchhHHHHHHHHHHHHHHHHh
Confidence 344566666666677777777889999999999999999999 8999 99999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHhccc--CCChhHHHHHHHHHHHHHHHhhhccccCChHHHH--HhHHH
Q psy9795 189 HEFKSQKLWTEIKFVLDNFAKPFTELFKATINLVGEH--KDNPTALKVIYNSLVVSCKIFYSLNFQDLPEYFE--DNMVV 264 (337)
Q Consensus 189 ~~~~s~~l~~el~~il~~~~~~L~~lf~~l~~~~~~~--~~~~~~~~~~~e~l~lilKif~~~~~~~lp~~~e--~~l~~ 264 (337)
|+.. ..+..+..++.. +||.+.++.+.. .+|. ...|++++|+|+|++.++.++|.++. +.+..
T Consensus 159 wk~n--deq~di~~li~a-------lfpile~~g~nl~s~~ny----~s~e~l~LILk~fKsvcy~~LP~~lsa~e~f~s 225 (970)
T COG5656 159 WKYN--DEQVDILMLITA-------LFPILEKVGGNLESQGNY----GSVETLMLILKSFKSVCYYSLPDFLSAIETFSS 225 (970)
T ss_pred hhcc--chHhhHHHHHHH-------hhHHHHHHhhccccCCch----hHHHHHHHHHHHHHHHHHhhCCHHHccchhhHH
Confidence 9743 333344444444 444444433221 1222 15688999999999999999999994 79999
Q ss_pred HHHHHHHhhccCCCC--CCcc-----------------chhhhhhhhccchhHHHhhh-----HHHHHHHH
Q psy9795 265 WMPALHNLLVTDVPC--LRTD-----------------SIFVNSFRRFISDVETRRRA-----ACDFVKIL 311 (337)
Q Consensus 265 W~~~f~~iL~~~~p~--l~~d-----------------~~~~r~~~~~~~~~~~~k~~-----~~~~~~~~ 311 (337)
|.+++++++++|.|. +..| .++.|+|.|||.+..+.+.. .|+++..+
T Consensus 226 w~ql~l~i~qkplp~evlsldpevRs~~~wvKckKWa~ynLyR~fqRy~k~s~~~~y~~f~~~f~t~vp~i 296 (970)
T COG5656 226 WFQLSLRILQKPLPNEVLSLDPEVRSLSKWVKCKKWAAYNLYRSFQRYIKKSYKKSYLSFYITFMTRVPMI 296 (970)
T ss_pred HHHHHHHHHcCCCCHHHhccChhhccccchhhhhHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999995 2222 58999999999988765432 55555555
No 4
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=100.00 E-value=6.7e-33 Score=283.07 Aligned_cols=265 Identities=26% Similarity=0.417 Sum_probs=223.0
Q ss_pred cccCCCCChhhhHHHHHHHHHHHhCCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHHHHH
Q psy9795 41 PNHDKNIQLESRSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIK 120 (337)
Q Consensus 41 L~~~~spD~~~Rk~AE~~L~~~~~~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~~IK 120 (337)
+....|+|+.++|.||++|++.++++||...|+.|..+...+.++|++|+|+|||+|++||.... ...+..+++..||
T Consensus 10 ~~~aqs~~p~s~k~AE~~Lrqwe~q~gF~~kL~~I~~~~~~~m~lR~~a~i~fkn~I~~~W~~~~--~~~i~p~e~v~IR 87 (947)
T COG5657 10 LDLAQSPDPPSVKCAEERLRQWEKQHGFALKLLSINLSAFNSMSLRWAALIQFKNYIDKHWREEN--GNSILPDENVLIR 87 (947)
T ss_pred HHhhcCCCCchHhhHHHHHHhhhccccHHHHHHHHHhccccchhHHHHHHHHHHhhHHHHhhhhc--ccCCCCccchHHH
Confidence 34567889999999999999999999999999999999889999999999999999999998422 3466677777999
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHH
Q psy9795 121 GLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRYRHEFKSQKLWTEI 200 (337)
Q Consensus 121 ~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~yr~~~~s~~l~~el 200 (337)
..++..+.++++.+..|.++|++.||+.|||++||+|++.+.+.++++|.+..++.|.++++|+|++|-.+|+++++-++
T Consensus 88 ~~l~~lii~s~n~l~iq~a~avs~IA~~DfPdeWpTL~~DL~~~Ls~~D~~tn~~~L~~~h~Ifk~~r~l~Rsd~lf~ei 167 (947)
T COG5657 88 DELFSLIISSSNQLQIQNALAVSRIARLDFPDEWPTLVPDLLSLLSEKDMVTNENSLRVLHHIFKRLRRLFRSDALFLEI 167 (947)
T ss_pred HHHHHHHHcccchHHHHHHHHHHHHHhccCcccchhHHHHHHhhhcccchHHHHHHHHHHHHHHHHHhhhhccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHhhhccccCChHHHHHhHHHHHHHHHHhhccCCCCC
Q psy9795 201 KFVLDNFAKPFTELFKATINLVGEHKDNPTALKVIYNSLVVSCKIFYSLNFQDLPEYFEDNMVVWMPALHNLLVTDVPCL 280 (337)
Q Consensus 201 ~~il~~~~~~L~~lf~~l~~~~~~~~~~~~~~~~~~e~l~lilKif~~~~~~~lp~~~e~~l~~W~~~f~~iL~~~~p~l 280 (337)
.+.+..+..++...+...-.... +.++..-..++.....||.||...+++.|++||++++.||+.|+.+++.-.|-+
T Consensus 168 ~p~L~~~l~pfl~~~~~~~s~~~---~~~~~llslfqv~L~~~r~~~~~~~qdi~eFfEd~l~~~m~~F~klls~~~~~l 244 (947)
T COG5657 168 APVLLSILCPFLFSSAYFWSMSE---NLDESLLSLFQVCLKLIRRYYDLGFQDIPEFFEDNLDKFMEHFCKLLSYSNPVL 244 (947)
T ss_pred HHHHHHHHHHHHHhccchhHHhh---cchhhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhcchhh
Confidence 99999888877655554444332 133333446677788899999999999999999999999999999999877766
Q ss_pred CccchhhhhhhhccchhHHHhhhHHHHHHHH-HHhhhh
Q psy9795 281 RTDSIFVNSFRRFISDVETRRRAACDFVKIL-CKYMED 317 (337)
Q Consensus 281 ~~d~~~~r~~~~~~~~~~~~k~~~~~~~~~~-~k~~~~ 317 (337)
+. +++. . ...--.|.++|+.++.| +||.+.
T Consensus 245 q~-~~le-----~-~~~~~l~~~i~e~f~ly~t~yp~~ 275 (947)
T COG5657 245 QK-DCLE-----D-CVYFKLKGSICEIFNLYTTKYPEV 275 (947)
T ss_pred hh-hhcc-----c-ceeeeecccHHHHHHHHhhccHHH
Confidence 53 2221 0 11112444589999999 676643
No 5
>KOG2274|consensus
Probab=99.94 E-value=2.5e-26 Score=234.56 Aligned_cols=262 Identities=16% Similarity=0.240 Sum_probs=205.2
Q ss_pred HHHHhhcccCCCCChhhhHHHHHHHHHHHhCCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCC---CCCC
Q psy9795 35 CSTQGVPNHDKNIQLESRSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDE---PDKI 111 (337)
Q Consensus 35 ~~l~~tL~~~~spD~~~Rk~AE~~L~~~~~~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~---~~~i 111 (337)
+-+.++|.+.+|||+++|.+||.+|++++..+||..+|.+++.+...+.+.||+|.|+||++|.+||.+..+. +...
T Consensus 4 ~~ii~~L~~~ls~d~~vr~~AE~~l~qle~~~~f~~aL~~va~~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~fr~~~~~ 83 (1005)
T KOG2274|consen 4 QAIIELLSGSLSADQNVRSQAETQLKQLELTEGFGVALAEVAANKDASLPLRQIALVLLKRYIEKHWSPNFEAFRYPLIV 83 (1005)
T ss_pred HHHHHHHHhhcCCChhHHHHHHHHHhccccchHHHHHHHHHHhCcccCchHHHHHHHHHHHHHHHhCCChHhhccCCCcc
Confidence 3456788999999999999999999999999999999999999988899999999999999999999977552 2337
Q ss_pred CHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhhhhhh
Q psy9795 112 HASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRYRHEF 191 (337)
Q Consensus 112 ~~e~K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~yr~~~ 191 (337)
+++.|..||+.+++.+..++.+||+..+++++.||..|||+.||+|++.+..+++++|.+.+++++.||.++..+---
T Consensus 84 ~e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~Pd~WpElv~~i~~~l~~~n~n~i~~am~vL~el~~ev~~-- 161 (1005)
T KOG2274|consen 84 SEEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYPDEWPELVPFILKLLSSGNENSIHGAMRVLAELSDEVDV-- 161 (1005)
T ss_pred cHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCchhhHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHH--
Confidence 899999999999999998889999999999999999999999999999999999999999999999999999986411
Q ss_pred hhhhhHHHHHHHHHHhhHHHHHHHHHHHHHhc-ccCCChhHHHHHHHHHHHHHHHhhhccccC----------ChHHHHH
Q psy9795 192 KSQKLWTEIKFVLDNFAKPFTELFKATINLVG-EHKDNPTALKVIYNSLVVSCKIFYSLNFQD----------LPEYFED 260 (337)
Q Consensus 192 ~s~~l~~el~~il~~~~~~L~~lf~~l~~~~~-~~~~~~~~~~~~~e~l~lilKif~~~~~~~----------lp~~~e~ 260 (337)
.+. ..+.. ..++.++.+.. ....+. ..+... .-+|.|++|..+- ...++..
T Consensus 162 --ee~----~~~~~-------~~l~~m~~~f~~~~~~s~---~~~~~a--a~~~lf~sc~~li~~~~e~~~~~~~~~~s~ 223 (1005)
T KOG2274|consen 162 --EEM----FFVGP-------VSLAEMYRIFALTIVYSI---ITRLGA--ARGKLFTSCLTLITNVEEVWAEHVKVFLSQ 223 (1005)
T ss_pred --HHH----hcccc-------cchhhhhhhhhhccccch---hHHHHh--hhhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 111 11111 12223222211 011111 111111 1167777775431 1245577
Q ss_pred hHHHHHHHHHHhhccCCCCCCccchhhhhhhhccchhHHHhhhHHHHHHHHHHhhhhhhhhcccccccc
Q psy9795 261 NMVVWMPALHNLLVTDVPCLRTDSIFVNSFRRFISDVETRRRAACDFVKILCKYMEDKMMGTSTAGAKD 329 (337)
Q Consensus 261 ~l~~W~~~f~~iL~~~~p~l~~d~~~~r~~~~~~~~~~~~k~~~~~~~~~~~k~~~~~~~~~~~~~~~~ 329 (337)
.+..||+.|-..++.+.+ +.++.++++.|. +..++++|.++....|+.....-|--
T Consensus 224 ~l~~~~~~l~h~l~~~~g------------~~~~~~~eilk~-~t~l~~nfp~~~~~~~~~~~~~vw~~ 279 (1005)
T KOG2274|consen 224 ILNQFMDILEHPLQRNDG------------SDFSLRMEILKC-LTQLVENFPSLINPFMMGMFSIVWQT 279 (1005)
T ss_pred HHHHHHHHHhhhhccccc------------chHHHHHHHHHH-HHHHHHhhHHhhhHHHHhhhhHHHHH
Confidence 899999998888877543 456778999999 89999999999999999888777643
No 6
>KOG1993|consensus
Probab=99.92 E-value=1.2e-23 Score=212.68 Aligned_cols=231 Identities=16% Similarity=0.244 Sum_probs=176.2
Q ss_pred HhhcccCCCCChhhhHHHHHHHHHHHhCCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHH
Q psy9795 38 QGVPNHDKNIQLESRSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDRE 117 (337)
Q Consensus 38 ~~tL~~~~spD~~~Rk~AE~~L~~~~~~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~ 117 (337)
..+|.+..|||..++|.||++|++.+++|||...|..|..+.+.+..+|.+|+|||||-|.++|++.. ...+|+|+|.
T Consensus 3 vq~Lq~Ats~d~~v~k~AE~qLr~WEtqPGF~~~L~sI~l~~t~dv~vRWmAviyfKNgIdryWR~~~--~~sl~~EEK~ 80 (978)
T KOG1993|consen 3 VQVLQQATSQDHIVVKPAEAQLRQWETQPGFFSKLYSIFLSKTNDVSVRWMAVIYFKNGIDRYWRRNT--KMSLPPEEKD 80 (978)
T ss_pred HHHHHHhcCCCcccchhHHHHHHhhccCCcHHHHHHHHHhccccceeeeeehhhhHhcchhHHhhcCC--cccCCHHHHH
Confidence 45788888999999999999999999999999999999999889999999999999999999998543 3589999999
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCC----CHHHHHHHHHHHHHHHhhhhhhhhh
Q psy9795 118 AIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTG----DFHIINGVLHTAHSLFKRYRHEFKS 193 (337)
Q Consensus 118 ~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~----d~~~~~~aL~~L~~i~k~yr~~~~s 193 (337)
.||.+++..+..+.+++..|.|.+++.||+-|||.+||+|++.|.+.+++. |....+..|.+|+.++|....+
T Consensus 81 ~iR~~Ll~~~~E~~nQlaiQ~AvlisrIARlDyPreWP~Lf~~L~~~Lq~~~~~gD~~~~~RiLi~l~~ilK~Lat~--- 157 (978)
T KOG1993|consen 81 FIRCNLLLHSDEENNQLAIQNAVLISRIARLDYPREWPDLFPDLLGQLQSSLGTGDSLVQHRILITLHHILKALATK--- 157 (978)
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHh---
Confidence 999999999998889999999999999999999999999999999999875 9999999999999999987432
Q ss_pred hhhHHHHHHHHHHhhHHHHHHH-HHHHH-----Hhc-ccCCChhHHHHHHHHHHHHHHHhhhcccc--CChH--HHHHhH
Q psy9795 194 QKLWTEIKFVLDNFAKPFTELF-KATIN-----LVG-EHKDNPTALKVIYNSLVVSCKIFYSLNFQ--DLPE--YFEDNM 262 (337)
Q Consensus 194 ~~l~~el~~il~~~~~~L~~lf-~~l~~-----~~~-~~~~~~~~~~~~~e~l~lilKif~~~~~~--~lp~--~~e~~l 262 (337)
.+.++. +......+....++ +.+.+ .++ ...++++..-..++.-++.+|.++.++.. +=|. .+.+.+
T Consensus 158 -RL~a~r-k~F~el~~~I~~~l~~~l~s~lt~~~lq~~ss~~ea~~LsalQ~s~~~lk~lRrlvv~G~~~P~kse~~eRl 235 (978)
T KOG1993|consen 158 -RLLADR-KAFYELAPEILTILAPILWSSLTMMFLQSVSSIKEATLLSALQRSYLTLKVLRRLVVFGFQNPSKSEFFERL 235 (978)
T ss_pred -HHhhhh-HHHHHHhHHHHHHHHHHHhcchHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHH
Confidence 332221 22233333222211 11111 111 11223333334667778899999877643 2232 255677
Q ss_pred HHHHHHHHHhhcc
Q psy9795 263 VVWMPALHNLLVT 275 (337)
Q Consensus 263 ~~W~~~f~~iL~~ 275 (337)
..+++...+.+..
T Consensus 236 ~~F~e~~~~~~~~ 248 (978)
T KOG1993|consen 236 LQFLELHQRKLLS 248 (978)
T ss_pred HHHHHHHHHHHHh
Confidence 7777775544443
No 7
>KOG2171|consensus
Probab=99.85 E-value=4.8e-20 Score=193.49 Aligned_cols=146 Identities=19% Similarity=0.358 Sum_probs=130.4
Q ss_pred hhhHHHHHHhhcccCCCCChhhhHHHHHHHHHHHhCCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCC
Q psy9795 30 NGEFFCSTQGVPNHDKNIQLESRSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPD 109 (337)
Q Consensus 30 ~~~~~~~l~~tL~~~~spD~~~Rk~AE~~L~~~~~~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~ 109 (337)
+..|.+++++. .|||+++|++||+.|+.....+.....|.+++.+. .++.+||+|||.+|+.+.++|+
T Consensus 3 ~~~l~qLl~~l----~spDn~vr~~Ae~~l~~~~~~~~~l~~L~~i~~~~-~~p~~Rq~aaVl~Rkl~~~~w~------- 70 (1075)
T KOG2171|consen 3 SAPLEQLLQQL----LSPDNEVRRQAEEALETLAKTEPLLPALAHILATS-ADPQVRQLAAVLLRKLLTKHWS------- 70 (1075)
T ss_pred hhHHHHHHHHh----cCCCchHHHHHHHHHHHhhcccchHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHHhh-------
Confidence 34555665544 46777999999999998777766777788887764 5899999999999999999998
Q ss_pred CCCHHHHHHHHHHHHHHHccCC-HHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhh
Q psy9795 110 KIHASDREAIKGLILHLMLTSP-EAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRY 187 (337)
Q Consensus 110 ~i~~e~K~~IK~~Ll~~L~~~~-~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~y 187 (337)
.++++.|+.||+.|+.++.+.+ +.||+++|++|+.||+.+.|++||+|++.|.++.+|+|+..++.|+.+|..+.+.+
T Consensus 71 ~l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~ 149 (1075)
T KOG2171|consen 71 RLSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETF 149 (1075)
T ss_pred cCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhh
Confidence 8999999999999999999964 78999999999999999999999999999999999999999999999999999876
No 8
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=99.80 E-value=3.3e-19 Score=173.70 Aligned_cols=140 Identities=41% Similarity=0.663 Sum_probs=108.5
Q ss_pred HHhhhhhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHhhhccccCChHHHHHhH
Q psy9795 183 LFKRYRHEFKSQKLWTEIKFVLDNFAKPFTELFKATINLVGEHKDNPTALKVIYNSLVVSCKIFYSLNFQDLPEYFEDNM 262 (337)
Q Consensus 183 i~k~yr~~~~s~~l~~el~~il~~~~~~L~~lf~~l~~~~~~~~~~~~~~~~~~e~l~lilKif~~~~~~~lp~~~e~~l 262 (337)
|+|+||+.++|++++.|++.+++.+.+||+.+|..+.+++.++..+++..+..++++++|+||||+++++|+|++|||++
T Consensus 1 ifkr~r~~~~s~~l~~eik~vl~~~~~pll~l~~~~~~~i~~~~~~~~~l~~~~~~l~lilKiF~sL~~~DLPe~fed~l 80 (370)
T PF08506_consen 1 IFKRYRYQFRSDELYTEIKYVLDKFAEPLLELFKQTDQLIEANANNAASLKVLFEMLKLILKIFYSLNCQDLPEFFEDNL 80 (370)
T ss_dssp HHGGGTTS---CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHHHHHSSS--HHHHHTH
T ss_pred CccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHccCcCcHHHHHHH
Confidence 68999999999999999999999999999999999999987777778888889999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCCCccchhhhhhhhccchhHHHhhhHHHHHHHH-HHhhhhh---hhhccccccc
Q psy9795 263 VVWMPALHNLLVTDVPCLRTDSIFVNSFRRFISDVETRRRAACDFVKIL-CKYMEDK---MMGTSTAGAK 328 (337)
Q Consensus 263 ~~W~~~f~~iL~~~~p~l~~d~~~~r~~~~~~~~~~~~k~~~~~~~~~~-~k~~~~~---~~~~~~~~~~ 328 (337)
..||+.|+.+|+++.|.+..|+. +-.+..+..|+.+|+.+++| .||-|.. ++.....-|.
T Consensus 81 ~~wm~~f~~~L~~~~p~l~~~d~------~e~~~l~kvK~~i~~~~~ly~~kY~e~f~~~l~~fv~~vw~ 144 (370)
T PF08506_consen 81 SEWMEIFHKYLTYPNPALEEDDD------DEPGLLEKVKAWICENLNLYAEKYEEEFEPFLPTFVQAVWN 144 (370)
T ss_dssp HHHHHHHHHHHH--SGGG-TT-S------SS--HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcccCCCCc------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998774332 22445677777799999999 6676553 3444444443
No 9
>KOG2023|consensus
Probab=99.77 E-value=2.5e-18 Score=171.75 Aligned_cols=169 Identities=15% Similarity=0.260 Sum_probs=147.1
Q ss_pred HHHHHhhcccCCCCChhhhHHHHHHHHHHHhCCChHHHHHHHHHhC-CCChHHHHHHHHHHhccccccCcccCCCCCCCC
Q psy9795 34 FCSTQGVPNHDKNIQLESRSPTENFLESVETNQNYPLLILTLVERA-DVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIH 112 (337)
Q Consensus 34 ~~~l~~tL~~~~spD~~~Rk~AE~~L~~~~~~pgf~~~Ll~i~~~~-~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~ 112 (337)
.+.+.++|.++.|||+++|+.+...|+++...|+|..||..|+.+. +.+..+|.+|+..|||.|+.+|. .++
T Consensus 12 l~ql~~lLk~s~Spn~~~~~~~~~~leq~~~~pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~-------~~~ 84 (885)
T KOG2023|consen 12 LQQLAQLLKNSQSPNSETRNNVQEKLEQFNLFPDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHYN-------SIP 84 (885)
T ss_pred HHHHHHHHHhccCCChHHHHHHHHHHHHHhcccchhceeeEEEecccccchhHHHHhhhhHhcccccccc-------CCC
Confidence 3444557889999999999999999999999999999999997653 35789999999999999999997 788
Q ss_pred HHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhhhhhhh
Q psy9795 113 ASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRYRHEFK 192 (337)
Q Consensus 113 ~e~K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~yr~~~~ 192 (337)
.+.+.+||+.++..+..+++.||...+.+|.+|+...+-..||+++|.|++++.++|.+..+||+.+|.+||++-.-.+.
T Consensus 85 ~~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~ld 164 (885)
T KOG2023|consen 85 SEVLDYIKSECLHGLGDASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLD 164 (885)
T ss_pred hHHHHHHHHHHHhhccCchHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999644444
Q ss_pred hhhhHHHHHHHHHHhhH
Q psy9795 193 SQKLWTEIKFVLDNFAK 209 (337)
Q Consensus 193 s~~l~~el~~il~~~~~ 209 (337)
++-..++++.++..|..
T Consensus 165 s~~~~rpl~~mipkfl~ 181 (885)
T KOG2023|consen 165 SDVLTRPLNIMIPKFLQ 181 (885)
T ss_pred hhcccCchHHhHHHHHH
Confidence 44444455555555543
No 10
>KOG1241|consensus
Probab=99.65 E-value=1.2e-15 Score=154.64 Aligned_cols=150 Identities=18% Similarity=0.271 Sum_probs=130.8
Q ss_pred cccCCCCChhhhHHHHHHHHHHHhC--CChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCC----CCCCCCHH
Q psy9795 41 PNHDKNIQLESRSPTENFLESVETN--QNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVED----EPDKIHAS 114 (337)
Q Consensus 41 L~~~~spD~~~Rk~AE~~L~~~~~~--pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~----~~~~i~~e 114 (337)
|..++|||+++|++||.+|+++..+ |+|+..|.+++.+.+.+...|++|++.|||.+..+=..... +|..++.|
T Consensus 7 le~tlSpD~n~~~~Ae~~l~~~~~~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl~l~~e 86 (859)
T KOG1241|consen 7 LEKTLSPDQNVRKRAEKQLEQAQSQNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWLQLPAE 86 (859)
T ss_pred HHHHcCCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHHcCCHH
Confidence 3448899999999999999998875 79999999999999889999999999999999753221110 24589999
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhhCC-CCChHHHHHHHHhhCCCCHH-HHHHHHHHHHHHHhhhhhh
Q psy9795 115 DREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFP-DKWPSLITDMVAKFGTGDFH-IINGVLHTAHSLFKRYRHE 190 (337)
Q Consensus 115 ~K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP-~~WPeLl~~L~~~l~s~d~~-~~~~aL~~L~~i~k~yr~~ 190 (337)
.|++||++++.+|.++.+...+..+.+++.||..+.| +.||+|+..++.....+.+. ...++|.+++.+|++...+
T Consensus 87 ~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pe 164 (859)
T KOG1241|consen 87 IREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPE 164 (859)
T ss_pred HHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHH
Confidence 9999999999999998889999999999999999999 79999999999999876544 6789999999999997654
No 11
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.52 E-value=2e-12 Score=128.13 Aligned_cols=156 Identities=18% Similarity=0.278 Sum_probs=132.8
Q ss_pred hhhHHHHHHhhcccCCCCChhhhHHHHHHHHHHHhCC--ChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCC-
Q psy9795 30 NGEFFCSTQGVPNHDKNIQLESRSPTENFLESVETNQ--NYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVED- 106 (337)
Q Consensus 30 ~~~~~~~l~~tL~~~~spD~~~Rk~AE~~L~~~~~~p--gf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~- 106 (337)
.++|.|+.+ ++-+|||+++|..||.+|+++.... .|...|.+++.+.+...++|.+|++.|||.+..+-.....
T Consensus 3 ~~ef~~l~~---n~vLspD~n~rl~aE~ql~~l~~~dF~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~ 79 (858)
T COG5215 3 KSEFRCLGK---NHVLSPDPNARLRAEAQLLELQSGDFEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKG 79 (858)
T ss_pred hHHHHHHHh---cccCCCCCCccccHHHHHHHhccccHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHH
Confidence 468888883 4569999999999999999998753 6899999999988888999999999999999754321111
Q ss_pred ---CCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhhCC-CCChHHHHHHHHhhCCCCH-HHHHHHHHHHH
Q psy9795 107 ---EPDKIHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFP-DKWPSLITDMVAKFGTGDF-HIINGVLHTAH 181 (337)
Q Consensus 107 ---~~~~i~~e~K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP-~~WPeLl~~L~~~l~s~d~-~~~~~aL~~L~ 181 (337)
.|..++.|.|++||...+.+|.++.+.+.+..+..++.||+.+.| ..||+|+..++.....+.+ ..+..+|.+++
T Consensus 80 ~~qrW~~~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~g 159 (858)
T COG5215 80 CSQRWLGMRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICG 159 (858)
T ss_pred HHHhhccCCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHH
Confidence 245799999999999999999999999999999999999999999 7999999999999887644 45678899999
Q ss_pred HHHhhhh
Q psy9795 182 SLFKRYR 188 (337)
Q Consensus 182 ~i~k~yr 188 (337)
.+|++-.
T Consensus 160 y~ces~~ 166 (858)
T COG5215 160 YHCESEA 166 (858)
T ss_pred HHhhccC
Confidence 9998743
No 12
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=99.49 E-value=8.6e-14 Score=105.38 Aligned_cols=75 Identities=23% Similarity=0.435 Sum_probs=66.7
Q ss_pred HHHHHHHHHhC-CChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCC-CCCCCCHHHHHHHHHHHHHHHcc
Q psy9795 55 TENFLESVETN-QNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVED-EPDKIHASDREAIKGLILHLMLT 129 (337)
Q Consensus 55 AE~~L~~~~~~-pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~-~~~~i~~e~K~~IK~~Ll~~L~~ 129 (337)
||++|++++.+ |||+.+|++|+.+.+.+.++|++|+++|||.|+++|..... .+..+++++|+.||+.|+++|.+
T Consensus 1 AE~~L~~~~~~~p~~~~~l~~il~~~~~~~~~R~~A~i~LKn~I~~~W~~~~~~~~~~~~~~~k~~Ik~~ll~~l~~ 77 (77)
T PF03810_consen 1 AEQQLKQFQKQNPGFWQYLLQILSSNSQDPEVRQLAAILLKNLIKKNWSPSKQKGWSQLPEEEKEQIKSQLLQLLLQ 77 (77)
T ss_dssp HHHHHHHHHHSCTCHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHSGGHHHHHHHHGSSHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHhhHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcCchhhccCCCCCCHHHHHHHHHHHHHHHcC
Confidence 89999999999 99999999999888889999999999999999999983221 13479999999999999999864
No 13
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=99.31 E-value=3.4e-10 Score=113.61 Aligned_cols=194 Identities=11% Similarity=0.229 Sum_probs=140.3
Q ss_pred CChhhhHHHHHHHHHHHhCCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHHHHHHHHHHH
Q psy9795 47 IQLESRSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIKGLILHL 126 (337)
Q Consensus 47 pD~~~Rk~AE~~L~~~~~~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~~IK~~Ll~~ 126 (337)
+|....+||++-|.+++..|+.|.---+|+.++. .++.+..|.-.|...|+++|+ .+|++.|..||+.+++.
T Consensus 26 g~g~~q~qAq~iLtkFq~~PdaWtkad~IL~~S~-~pqskyiALs~LdklIttkWk-------llp~~~r~GiRnyvv~~ 97 (1053)
T COG5101 26 GDGRKQEQAQRILTKFQELPDAWTKADYILNNSK-LPQSKYIALSLLDKLITTKWK-------LLPEGMRQGIRNYVVQL 97 (1053)
T ss_pred CCchhHHHHHHHHHHHHhCchHHHHHHHHHhccc-CcchhhhHHHHHHHHHHhhhh-------hCCcHHHHHHHHHHHHH
Confidence 4558899999999999999999999999998865 578889999999999999998 89999999999999999
Q ss_pred HccC--CHH-------HHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCCCHHHHHHH---HHHHHHHHhhhhhhhhhh
Q psy9795 127 MLTS--PEA-------IQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGV---LHTAHSLFKRYRHEFKSQ 194 (337)
Q Consensus 127 L~~~--~~~-------Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~~~~~~a---L~~L~~i~k~yr~~~~s~ 194 (337)
+++. +.. +-..+-.++..|++.|||.+||+++|++++..++ +.+..++. |..|++-+-+|. .+
T Consensus 98 vI~~s~dd~v~~~qk~~lnkldltLvqIlKqeWP~nWP~FIpeli~~S~~-s~~vCeNnmivLklLsEEvFdfS----ae 172 (1053)
T COG5101 98 VIEKSQDDKVRDKQKYVLNKLDLTLVQILKQEWPRNWPTFIPELINVSQI-SMEVCENNMIVLKLLSEEVFDFS----AE 172 (1053)
T ss_pred HHHhcccHHHHHHHHHHHHHhhhHHHHHHHHhcccccchhhHHHHhhccc-hHHHHhccHHHHHHhHHHHHhcc----HH
Confidence 9873 333 4456778899999999999999999999998764 33344444 444555444442 22
Q ss_pred hhHHHH-HHHHHHhhHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHhhhccccCChHHHHH
Q psy9795 195 KLWTEI-KFVLDNFAKPFTELFKATINLVGEHKDNPTALKVIYNSLVVSCKIFYSLNFQDLPEYFED 260 (337)
Q Consensus 195 ~l~~el-~~il~~~~~~L~~lf~~l~~~~~~~~~~~~~~~~~~e~l~lilKif~~~~~~~lp~~~e~ 260 (337)
.+.+-. ..+-.++.--+.++|.-+.+++... .+++.+..+++.+ .+++.|..+--.|+.
T Consensus 173 qmTq~k~~~LkNqm~~EF~qIF~lc~qiLE~~-~~~SLi~ATLesl------lrfl~wiPl~yIfeT 232 (1053)
T COG5101 173 QMTQVKKRLLKNQMKIEFPQIFGLCKQILEYS-RDESLIEATLESL------LRFLEWIPLDYIFET 232 (1053)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CChHHHHHHHHHH------HHHHhhCchhHHHHH
Confidence 222211 2344556666678888888887543 3566555555542 344555555444543
No 14
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=99.07 E-value=3.9e-09 Score=88.95 Aligned_cols=134 Identities=18% Similarity=0.227 Sum_probs=87.1
Q ss_pred CHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhhh-hh--hhhhhhHHHHHHHHHHh
Q psy9795 131 PEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRYR-HE--FKSQKLWTEIKFVLDNF 207 (337)
Q Consensus 131 ~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~yr-~~--~~s~~l~~el~~il~~~ 207 (337)
|+.|++++|.+++.|+.+|||++||++++.+++.+++ +......+|.+|..+.+++. +. ..+.+-+++++..+...
T Consensus 1 p~~i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~ 79 (148)
T PF08389_consen 1 PPFIRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSN 79 (148)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHChhhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHH
Confidence 4679999999999999999999999999999999987 47778888999988888875 21 11223344555555555
Q ss_pred hHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHhhhccccCChHHHHHhHHHHHHHHHHhhcc
Q psy9795 208 AKPFTELFKATINLVGEHKDNPTALKVIYNSLVVSCKIFYSLNFQDLPEYFEDNMVVWMPALHNLLVT 275 (337)
Q Consensus 208 ~~~L~~lf~~l~~~~~~~~~~~~~~~~~~e~l~lilKif~~~~~~~lp~~~e~~l~~W~~~f~~iL~~ 275 (337)
.+ .++..+.+.+....... ..++...++|++.+.+..--++.+.+ .++++....++..
T Consensus 80 ~~---~i~~~l~~~l~~~~~~~-----~~~~~~~~L~~l~s~i~~~~~~~i~~--~~~l~~~~~~l~~ 137 (148)
T PF08389_consen 80 SP---DILEILSQILSQSSSEA-----NEELVKAALKCLKSWISWIPIELIIN--SNLLNLIFQLLQS 137 (148)
T ss_dssp HH---HHHHHHHHHHHHHCHCC-----HHHHHHHHHHHHHHHTTTS-HHHHHS--SSHHHHHHHHTTS
T ss_pred HH---HHHHHHHHHHHhhcccc-----HHHHHHHHHHHHHHHHHhCCHHHhcc--HHHHHHHHHHcCC
Confidence 44 44444444443222111 13456888999988776322333322 2255555666633
No 15
>KOG2020|consensus
Probab=98.86 E-value=5.1e-08 Score=105.01 Aligned_cols=163 Identities=18% Similarity=0.338 Sum_probs=121.2
Q ss_pred ChhhhHHHHHHHHHHHhCCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHHHHHHHHHHHH
Q psy9795 48 QLESRSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIKGLILHLM 127 (337)
Q Consensus 48 D~~~Rk~AE~~L~~~~~~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~~IK~~Ll~~L 127 (337)
+.+.|.+|.+.+.+++..|..+.-...|+..++ ...+|.+|.-+|-|.|+.+|+ .+|.++|..+|+.+++.+
T Consensus 25 s~~~r~eA~~~l~~lke~~~~~~~~~~iL~~s~-~~~~k~f~Lqlle~vik~~W~-------~~~~~~r~glk~~v~~~~ 96 (1041)
T KOG2020|consen 25 SNEERGEAQQILEELKEEPDSWLQVYLILKLST-NPILKYFALQLLENVIKFRWN-------SLPVEERVGLKNYVLTLI 96 (1041)
T ss_pred chHHHHHHHHHHHHHHhCcchHHHHHHHHhccC-CchhheeeHHHHHHHHHHhcc-------cCCccccHHHHHHHHHHH
Confidence 568999999999999999998888888877753 678999999999999999998 789999999999999998
Q ss_pred ccC---------CHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhhhhhhhhhhhHH
Q psy9795 128 LTS---------PEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRYRHEFKSQKLWT 198 (337)
Q Consensus 128 ~~~---------~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~yr~~~~s~~l~~ 198 (337)
... .+.++.+++..+..|++.|||+.||++++++.+....+. ...+.++.++.-+.+++ +.+.+.++..
T Consensus 97 ~~~~~~~~~~~~~~~~~~kL~~i~Vqi~K~eWp~~wp~~i~dl~~~s~~s~-~~~el~m~Il~lLsEdv-f~~ss~~~~q 174 (1041)
T KOG2020|consen 97 IEASPDEDVSETEKHLLNKLNLILVQIVKREWPAIWPTFIPDLAQSSKTSE-TVCELSMIILLLLSEEV-FDFSSSELTQ 174 (1041)
T ss_pred hhcCCcHhHHHHHHHHHHHHhHHHHHHHHHHHHhhcchhhhhHHHHhhcCc-ccchHHHHHHHHHHHHH-hcccchHHHh
Confidence 762 135789999999999999999999999999999987542 22344445555555543 1123444333
Q ss_pred HHHHHHHHhhH-HHHHHHHHHHH
Q psy9795 199 EIKFVLDNFAK-PFTELFKATIN 220 (337)
Q Consensus 199 el~~il~~~~~-~L~~lf~~l~~ 220 (337)
....+++.... .+..+|.-+..
T Consensus 175 ~~~~il~~~~~~~f~~i~~l~~~ 197 (1041)
T KOG2020|consen 175 QKIIILKNLLENEFQQIFTLCSY 197 (1041)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHH
Confidence 33344444433 33344444444
No 16
>KOG2021|consensus
Probab=98.24 E-value=0.00018 Score=74.45 Aligned_cols=116 Identities=10% Similarity=0.279 Sum_probs=100.9
Q ss_pred CCChhhhHHHHHHHHHHHhCCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHHHHHHHHHH
Q psy9795 46 NIQLESRSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIKGLILH 125 (337)
Q Consensus 46 spD~~~Rk~AE~~L~~~~~~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~~IK~~Ll~ 125 (337)
+.|+..|+||-+.+++++..|..+..+.+++....-+..+|..+.-.|-..++..++ ..+..+.+.||..+..
T Consensus 16 ~vdsa~KqqA~~y~~qiKsSp~aw~Icie~l~~~ts~d~vkf~clqtL~e~vrekyn-------e~nl~elqlvR~sv~s 88 (980)
T KOG2021|consen 16 RVDSATKQQAIEYLNQIKSSPNAWEICIELLINETSNDLVKFYCLQTLIELVREKYN-------EANLNELQLVRFSVTS 88 (980)
T ss_pred cccHHHHHHHHHHHHhhcCCccHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHhhc-------cCCHHHHHHHHHHHHH
Confidence 569999999999999999999999999999887767889999999999888866443 4677888999998876
Q ss_pred HHc-----cC----CHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCC
Q psy9795 126 LML-----TS----PEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTG 168 (337)
Q Consensus 126 ~L~-----~~----~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~ 168 (337)
-+. .. +..|+++++.+++.+.-.+||..|++++..+...++-+
T Consensus 89 wlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp~~WnsfF~dlmsv~~~~ 140 (980)
T KOG2021|consen 89 WLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYPDCWNSFFDDLMSVFQVD 140 (980)
T ss_pred HHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcc
Confidence 553 23 56899999999999999999999999999999998765
No 17
>KOG1410|consensus
Probab=98.05 E-value=0.00063 Score=69.90 Aligned_cols=133 Identities=15% Similarity=0.164 Sum_probs=112.0
Q ss_pred CCChhhhHHHHHHHHHHHhCCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHHHHHHHHHH
Q psy9795 46 NIQLESRSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIKGLILH 125 (337)
Q Consensus 46 spD~~~Rk~AE~~L~~~~~~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~~IK~~Ll~ 125 (337)
|.|+..|-+||..|.++...|+++.-+--++...+ .+....+|+..|-+.|.++ .++|-+.|-.||+.+++
T Consensus 17 s~D~~~R~~AE~~L~e~s~speclskCqlll~~gs-~pYs~mlAst~L~Klvs~~--------t~lpl~qrldir~Yiln 87 (1082)
T KOG1410|consen 17 STDPTARHRAEKALAELSESPECLSKCQLLLERGS-YPYSQMLASTCLMKLVSRK--------TPLPLEQRLDIRNYILN 87 (1082)
T ss_pred cCCHHHHHHHHHHHHHHccCHHHHHHHHHHHHcCC-CchHHHHHHHHHHHHHcCC--------CCCcHHHHHHHHHHHHH
Confidence 56889999999999999999999988877777654 4566677777776677654 26999999999999999
Q ss_pred HHcc-CC---HHHHHHHHHHHHHHHhhhCCC------CChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhh
Q psy9795 126 LMLT-SP---EAIQKQLSDATAIIGKSDFPD------KWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRY 187 (337)
Q Consensus 126 ~L~~-~~---~~Ir~ql~~~i~~Ia~~DfP~------~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~y 187 (337)
.+.+ .| +.+-..++..++.|-+..|-+ .+-+.+..+...++.++.++-..|+.+|.+++.+.
T Consensus 88 ylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~~ve~~~igv~iLsqLvqem 159 (1082)
T KOG1410|consen 88 YLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMDNVEHCIIGVQILSQLVQEM 159 (1082)
T ss_pred HHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccCchHHHHHHHHHHHHHHHHh
Confidence 9998 44 468889999999999987762 34588999999999999999999999999999886
No 18
>KOG2022|consensus
Probab=97.71 E-value=0.00077 Score=71.00 Aligned_cols=113 Identities=17% Similarity=0.317 Sum_probs=97.6
Q ss_pred ChhhhHHHHHHHHHHHhCCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHHHHHHHHHHHH
Q psy9795 48 QLESRSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIKGLILHLM 127 (337)
Q Consensus 48 D~~~Rk~AE~~L~~~~~~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~~IK~~Ll~~L 127 (337)
+.+....+++.|.+++..|.-+..-.++++... ...+|.++|+.|--.|.+||. .+++++.+.+|.+++..+
T Consensus 21 ~~~~~a~~qk~Lq~aq~S~Q~w~~s~~llQ~~k-~~evqyFGAltL~~ki~~~~e-------~~~~~~~~qL~~klf~~l 92 (982)
T KOG2022|consen 21 NHENDAITQKWLQDAQCSQQGWHFSWQLLQPDK-SSEVQYFGALTLHDKINTRWE-------ECPANEAVQLKLKLFLIL 92 (982)
T ss_pred ChHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCc-hhHHHHHhHHHHHHHHHhhhc-------cCChhHHHHHHHHHHHHH
Confidence 667788899999999999988888778877654 467799999999999999997 788999999999999999
Q ss_pred ccC---CHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCC
Q psy9795 128 LTS---PEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTG 168 (337)
Q Consensus 128 ~~~---~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~ 168 (337)
... ++.|-++++.+++..+-+--|+.||+-+.+++..++.+
T Consensus 93 ~~~~g~~~lVl~kl~~sLasl~l~~~~d~Wp~ai~~vi~~l~~q 136 (982)
T KOG2022|consen 93 SRFAGGPKLVLNKLCASLASLILYMVPDLWPTAIQDVIPTLQGQ 136 (982)
T ss_pred HHhcCCchhHHHHHHHHHHHHHHHHccccCCchHHHHHHHHhcc
Confidence 763 46788888888888888888999999999999999864
No 19
>KOG2081|consensus
Probab=97.30 E-value=0.016 Score=58.65 Aligned_cols=125 Identities=14% Similarity=0.270 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHHHHHHHHHHHHcc---
Q psy9795 53 SPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIKGLILHLMLT--- 129 (337)
Q Consensus 53 k~AE~~L~~~~~~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~~IK~~Ll~~L~~--- 129 (337)
..|-+.|.++++.+.-+..+-+++... .+...-.+|+-.+||.|+.... .+|+..-...|+.++..+..
T Consensus 2 ~~A~~~L~~FQ~S~~aW~i~~eiL~~~-~~~~~~~FaaqTlr~Ki~~~F~-------~Lp~~~~~slrdsl~thl~~l~~ 73 (559)
T KOG2081|consen 2 EKANNWLGNFQKSNDAWQICEEILSQK-CDVEALLFAAQTLRNKIQYDFS-------ELPPLTHASLRDSLITHLKELHD 73 (559)
T ss_pred chHhHHHHHhCCChHHHHHHHHHHccc-chHHHHHHHHHHHHHHHHhhHH-------hcCcchhHHHHHHHHHHHHHHHh
Confidence 468889999999999999998888775 6889999999999999999876 56565556667755555443
Q ss_pred CCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCCCHH--HHHHHHHHHHHHHhhh
Q psy9795 130 SPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFH--IINGVLHTAHSLFKRY 187 (337)
Q Consensus 130 ~~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~~--~~~~aL~~L~~i~k~y 187 (337)
.++.+++|++-+++.+|-+- | .|.+-++++++..++.... .....|.++-+-++++
T Consensus 74 ~~~~i~tQL~vavA~Lal~~-~-~W~n~I~e~v~~~~~~~~~~~~lLeiL~VlPEE~~~~ 131 (559)
T KOG2081|consen 74 HPDVIRTQLAVAVAALALHM-P-EWVNPIFELVRALSNKHPAVPILLEILKVLPEETRDI 131 (559)
T ss_pred CCchHHHHHHHHHHHHHHHh-H-hhcchHHHHHHHhhcCCccHHHHHHHHHhCcHhhcch
Confidence 34499999999999999874 4 7998888888888776544 2333344444444444
No 20
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=95.04 E-value=3.6 Score=42.14 Aligned_cols=142 Identities=13% Similarity=0.141 Sum_probs=98.2
Q ss_pred hHHHHHHhhcccCCCCChhhhHHHHHHHHHHHh----------CCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccC
Q psy9795 32 EFFCSTQGVPNHDKNIQLESRSPTENFLESVET----------NQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNW 101 (337)
Q Consensus 32 ~~~~~l~~tL~~~~spD~~~Rk~AE~~L~~~~~----------~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W 101 (337)
++...++..|. +|++.+|.-|=.+|..+-. .++....++..+.++ +..+...|+-.|++..+..
T Consensus 77 ~~~~~L~~gL~---h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~--d~~Va~~A~~~L~~l~~~~- 150 (503)
T PF10508_consen 77 QYQPFLQRGLT---HPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDP--DLSVAKAAIKALKKLASHP- 150 (503)
T ss_pred HHHHHHHHHhc---CCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCC--cHHHHHHHHHHHHHHhCCc-
Confidence 34445544454 5778999998777766422 356667777777653 7899999999999998642
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhh--CCCC-C-hHHHHHHHHhhCCCCHHHHHHHH
Q psy9795 102 PLVEDEPDKIHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSD--FPDK-W-PSLITDMVAKFGTGDFHIINGVL 177 (337)
Q Consensus 102 ~~~~~~~~~i~~e~K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~D--fP~~-W-PeLl~~L~~~l~s~d~~~~~~aL 177 (337)
...+ ..++.+ +...|-..+.+++..+|-.+.+++..|+++. --+. | .++++.++..+.++|.-...+++
T Consensus 151 ~~~~---~l~~~~----~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnal 223 (503)
T PF10508_consen 151 EGLE---QLFDSN----LLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNAL 223 (503)
T ss_pred hhHH---HHhCcc----hHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHH
Confidence 1000 011211 1555666666667789999999999998653 1112 2 25999999999999988899999
Q ss_pred HHHHHHHhh
Q psy9795 178 HTAHSLFKR 186 (337)
Q Consensus 178 ~~L~~i~k~ 186 (337)
.+|.++.+.
T Consensus 224 ell~~La~~ 232 (503)
T PF10508_consen 224 ELLSELAET 232 (503)
T ss_pred HHHHHHHcC
Confidence 999999994
No 21
>KOG1992|consensus
Probab=94.75 E-value=4.5 Score=43.35 Aligned_cols=33 Identities=48% Similarity=0.654 Sum_probs=28.3
Q ss_pred ccchhHHHhhhHHHHHHHHHHhhhhhhhhcccc
Q psy9795 293 FISDVETRRRAACDFVKILCKYMEDKMMGTSTA 325 (337)
Q Consensus 293 ~~~~~~~~k~~~~~~~~~~~k~~~~~~~~~~~~ 325 (337)
-|+..+|.|+..|++++-.||.+|.++-++.+.
T Consensus 371 EGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~ 403 (960)
T KOG1992|consen 371 EGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFSS 403 (960)
T ss_pred ccCCcchhHHHHHHHHHHHHHHhcchhHHHHHH
Confidence 499999999999999999999888887666544
No 22
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=94.48 E-value=3.1 Score=36.46 Aligned_cols=137 Identities=10% Similarity=0.069 Sum_probs=79.3
Q ss_pred HHHHHHHHHHccC--CHHHHHHHHHHHHHHHhhh--CC-CCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhhhhhhh
Q psy9795 118 AIKGLILHLMLTS--PEAIQKQLSDATAIIGKSD--FP-DKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRYRHEFK 192 (337)
Q Consensus 118 ~IK~~Ll~~L~~~--~~~Ir~ql~~~i~~Ia~~D--fP-~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~yr~~~~ 192 (337)
.||..++.+|... ....-+.++.+++.+|..- ++ +.|+||.+.+.... .+++ ..|+.++..+.-.+ |
T Consensus 3 eikplLIsCL~~q~~k~s~~KiL~~iVs~Va~~v~~~~~~~W~eL~d~Ils~~-~~e~---~kA~~IF~~L~~~l-~--- 74 (174)
T PF04510_consen 3 EIKPLLISCLTMQETKESDFKILRRIVSHVAYEVFDLQEGGWDELSDCILSLS-ENEP---VKAFHIFICLPMPL-Y--- 74 (174)
T ss_pred chHHHHHHHHHhhcccHhHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhh-ccch---HHHHHHHHhCCchh-h---
Confidence 4788899999874 3456778888888888654 36 79999999988865 3343 44555555544222 2
Q ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHhhhccccCCh-HHHHHhHHHHHHHHHH
Q psy9795 193 SQKLWTEIKFVLDNFAKPFTELFKATINLVGEHKDNPTALKVIYNSLVVSCKIFYSLNFQDLP-EYFEDNMVVWMPALHN 271 (337)
Q Consensus 193 s~~l~~el~~il~~~~~~L~~lf~~l~~~~~~~~~~~~~~~~~~e~l~lilKif~~~~~~~lp-~~~e~~l~~W~~~f~~ 271 (337)
+ +-+.|.+..+++...+.+..+...+ .....=.+...++.+-.+.....+ +.+++.+..-+.....
T Consensus 75 --~---------efl~~~~~~L~~~~~~~L~~p~~~d--~~~W~LAl~~a~~~~Iql~e~~~~~~~vk~L~~~mv~Sv~e 141 (174)
T PF04510_consen 75 --G---------EFLIPFMENLLPEISKVLLPPEEVD--VEDWVLALTGAVCMAIQLLESSMRVDLVKELLPKMVKSVKE 141 (174)
T ss_pred --h---------hHHHHHHHHHHHHHHHHcCCchhcc--HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 1 1222333355566666554332211 111222233445555555555555 5556777776666666
Q ss_pred hhcc
Q psy9795 272 LLVT 275 (337)
Q Consensus 272 iL~~ 275 (337)
++++
T Consensus 142 lV~~ 145 (174)
T PF04510_consen 142 LVER 145 (174)
T ss_pred HHHc
Confidence 6666
No 23
>PTZ00429 beta-adaptin; Provisional
Probab=93.66 E-value=12 Score=40.30 Aligned_cols=138 Identities=7% Similarity=-0.030 Sum_probs=82.8
Q ss_pred CCChhhhHHHHHHHHHHHhC-CChHHHH---HHHHHhCCCChHHHHHHHHHHhccccccCcc----------c--CCC--
Q psy9795 46 NIQLESRSPTENFLESVETN-QNYPLLI---LTLVERADVDMTIRIAGAVAFKNYVKRNWPL----------V--EDE-- 107 (337)
Q Consensus 46 spD~~~Rk~AE~~L~~~~~~-pgf~~~L---l~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~----------~--~~~-- 107 (337)
|.|...|+.|=+.+-.+... -+..... +..+.+ .+..+|.+.-+|+.|+-+.+=.. + +..
T Consensus 43 s~~~~~kk~alKkvIa~mt~G~DvS~LF~dVvk~~~S--~d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np~ 120 (746)
T PTZ00429 43 GTDSYRKKAAVKRIIANMTMGRDVSYLFVDVVKLAPS--TDLELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSPV 120 (746)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHhCC--CCHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCHH
Confidence 33445666665555433221 1222222 233333 36788888888888776533210 0 000
Q ss_pred ---------CCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhhCCCCCh--HHHHHHHHhhCCCCHHHHHHH
Q psy9795 108 ---------PDKIHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWP--SLITDMVAKFGTGDFHIINGV 176 (337)
Q Consensus 108 ---------~~~i~~e~K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~WP--eLl~~L~~~l~s~d~~~~~~a 176 (337)
..--.++--+.+-..+..++.+.++.||+..+.|+..|.+.+ |+.-+ ++++.|..++..+|+..+.+|
T Consensus 121 IRaLALRtLs~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~-pelv~~~~~~~~L~~LL~D~dp~Vv~nA 199 (746)
T PTZ00429 121 VRALAVRTMMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDD-MQLFYQQDFKKDLVELLNDNNPVVASNA 199 (746)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC-cccccccchHHHHHHHhcCCCccHHHHH
Confidence 001112222344444556666677899999999999998764 54332 456778888888899999999
Q ss_pred HHHHHHHHhh
Q psy9795 177 LHTAHSLFKR 186 (337)
Q Consensus 177 L~~L~~i~k~ 186 (337)
+.+|.+|.+.
T Consensus 200 l~aL~eI~~~ 209 (746)
T PTZ00429 200 AAIVCEVNDY 209 (746)
T ss_pred HHHHHHHHHh
Confidence 9999999864
No 24
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=92.73 E-value=1.4 Score=34.89 Aligned_cols=74 Identities=16% Similarity=0.135 Sum_probs=49.8
Q ss_pred CCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHhcccCCChhH
Q psy9795 152 DKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFTELFKATINLVGEHKDNPTA 231 (337)
Q Consensus 152 ~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~yr~~~~s~~l~~el~~il~~~~~~L~~lf~~l~~~~~~~~~~~~~ 231 (337)
+.-+++++-++.+++.+|...++.|..+|+.++|..+- .++. -+.++|..+..+..- .++.
T Consensus 23 ~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~------------~~l~----~f~~IF~~L~kl~~D---~d~~ 83 (97)
T PF12755_consen 23 KYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARG------------EILP----YFNEIFDALCKLSAD---PDEN 83 (97)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH------------HHHH----HHHHHHHHHHHHHcC---Cchh
Confidence 44678899999999999999999999999999997632 1223 333677777776531 2233
Q ss_pred HHHHHHHHHHHHH
Q psy9795 232 LKVIYNSLVVSCK 244 (337)
Q Consensus 232 ~~~~~e~l~lilK 244 (337)
.+...+.|-..+|
T Consensus 84 Vr~~a~~Ld~llk 96 (97)
T PF12755_consen 84 VRSAAELLDRLLK 96 (97)
T ss_pred HHHHHHHHHHHhc
Confidence 4445555555444
No 25
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=92.55 E-value=0.41 Score=37.67 Aligned_cols=106 Identities=12% Similarity=0.079 Sum_probs=75.4
Q ss_pred CChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHH----HHHHHHHHHHccCCHHHHHHHHHH
Q psy9795 66 QNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDRE----AIKGLILHLMLTSPEAIQKQLSDA 141 (337)
Q Consensus 66 pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~----~IK~~Ll~~L~~~~~~Ir~ql~~~ 141 (337)
.|....|++.+.+. +..+|..|...+.|..... ++..+. .+-..+++.|.+.+..++...+.+
T Consensus 6 ~~~i~~l~~~l~~~--~~~~~~~a~~~l~~l~~~~-----------~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~ 72 (120)
T cd00020 6 AGGLPALVSLLSSS--DENVQREAAWALSNLSAGN-----------NDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWA 72 (120)
T ss_pred cCChHHHHHHHHcC--CHHHHHHHHHHHHHHhcCC-----------HHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHH
Confidence 46778888888765 4789999999999986542 111222 223355666666678999999999
Q ss_pred HHHHHhhhCCC---CCh-HHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q psy9795 142 TAIIGKSDFPD---KWP-SLITDMVAKFGTGDFHIINGVLHTAHSLF 184 (337)
Q Consensus 142 i~~Ia~~DfP~---~WP-eLl~~L~~~l~s~d~~~~~~aL~~L~~i~ 184 (337)
+..|+...-+. -+. ++++.+.+.++..+......++.+|..++
T Consensus 73 L~~l~~~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 73 LRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHccCcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 99998754221 232 47888888888888888888888888776
No 26
>KOG2171|consensus
Probab=92.22 E-value=22 Score=39.49 Aligned_cols=147 Identities=14% Similarity=0.148 Sum_probs=96.4
Q ss_pred hHHHHHHhhcccCCCCChhhhHHHHHHHHHHHh--CCCh--------HHHHHHHHHhCCCChHHHHHHHHHHhccccccC
Q psy9795 32 EFFCSTQGVPNHDKNIQLESRSPTENFLESVET--NQNY--------PLLILTLVERADVDMTIRIAGAVAFKNYVKRNW 101 (337)
Q Consensus 32 ~~~~~l~~tL~~~~spD~~~Rk~AE~~L~~~~~--~pgf--------~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W 101 (337)
.+-.++..+++.-.+|++-+|-+|=..+-|+.. +|++ ...|+.++.+.+ ...|...|+..+=|+....=
T Consensus 386 ~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~-~~rV~ahAa~al~nf~E~~~ 464 (1075)
T KOG2171|consen 386 NLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQ-NVRVQAHAAAALVNFSEECD 464 (1075)
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccC-chHHHHHHHHHHHHHHHhCc
Confidence 355578888899999999999999999988876 3433 234555555543 45666777788777765432
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHHHc-cCCHHHHHHHHHHHHHHHh---hhCCCCChHHHHHHHHhhCCCCH-H---HH
Q psy9795 102 PLVEDEPDKIHASDREAIKGLILHLML-TSPEAIQKQLSDATAIIGK---SDFPDKWPSLITDMVAKFGTGDF-H---II 173 (337)
Q Consensus 102 ~~~~~~~~~i~~e~K~~IK~~Ll~~L~-~~~~~Ir~ql~~~i~~Ia~---~DfP~~WPeLl~~L~~~l~s~d~-~---~~ 173 (337)
++. -.+.+ ..+=+..+..|. +.++.++.+...+|+.+|. ..|-..++.++|.|.+.+++.+. + ..
T Consensus 465 ~~~--l~pYL-----d~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~Lr 537 (1075)
T KOG2171|consen 465 KSI--LEPYL-----DGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELR 537 (1075)
T ss_pred HHH--HHHHH-----HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHH
Confidence 210 00122 223332344444 4568899999999999974 56667889999999999998642 1 12
Q ss_pred HHHHHHHHHHHhh
Q psy9795 174 NGVLHTAHSLFKR 186 (337)
Q Consensus 174 ~~aL~~L~~i~k~ 186 (337)
-..+.|++-+-..
T Consensus 538 gktmEcisli~~A 550 (1075)
T KOG2171|consen 538 GKTMECLSLIARA 550 (1075)
T ss_pred hhHHHHHHHHHHH
Confidence 3345666665543
No 27
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=92.20 E-value=4.4 Score=40.95 Aligned_cols=149 Identities=11% Similarity=0.095 Sum_probs=96.0
Q ss_pred hhhccchhhHHHHHHhhcccC-CCCChhhhHHHHHHHHHHHhCCChHHH----HHHHHHhCCCChHHHHHHHHHHhcccc
Q psy9795 24 EDMCDRNGEFFCSTQGVPNHD-KNIQLESRSPTENFLESVETNQNYPLL----ILTLVERADVDMTIRIAGAVAFKNYVK 98 (337)
Q Consensus 24 ~~~~~~~~~~~~~l~~tL~~~-~spD~~~Rk~AE~~L~~~~~~pgf~~~----Ll~i~~~~~~~~~iRq~AaI~LKN~V~ 98 (337)
.-+.+.+.+..-+..+++..+ .|||+..|.-|=..|-.+. .|+.... +.+++.++ ++.||..|++.+-+..+
T Consensus 67 ~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~-~~~~~~~l~~~v~~ll~~~--~~~VRk~A~~~l~~i~~ 143 (526)
T PF01602_consen 67 SLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIR-TPEMAEPLIPDVIKLLSDP--SPYVRKKAALALLKIYR 143 (526)
T ss_dssp HHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH--SHHHHHHHHHHHHHHHHSS--SHHHHHHHHHHHHHHHH
T ss_pred HHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc-ccchhhHHHHHHHHHhcCC--chHHHHHHHHHHHHHhc
Confidence 344555556555666666655 5788899998888887765 3444444 44455543 67999999999998887
Q ss_pred ccCcccCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHH-Hhhh-CCCCChHHHHHHHHhhCCCCHHHHHHH
Q psy9795 99 RNWPLVEDEPDKIHASDREAIKGLILHLMLTSPEAIQKQLSDATAII-GKSD-FPDKWPSLITDMVAKFGTGDFHIINGV 176 (337)
Q Consensus 99 ~~W~~~~~~~~~i~~e~K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~I-a~~D-fP~~WPeLl~~L~~~l~s~d~~~~~~a 176 (337)
.... .+ +.. +-+.+.+++.+.+..++.....++..| ...+ +-.-.+.++..+.+.+...++-.....
T Consensus 144 ~~p~-------~~-~~~---~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~i 212 (526)
T PF01602_consen 144 KDPD-------LV-EDE---LIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKI 212 (526)
T ss_dssp HCHC-------CH-HGG---HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred cCHH-------HH-HHH---HHHHHhhhccCCcchhHHHHHHHHHHHccCcchhhhhHHHHHHHhhhcccccchHHHHHH
Confidence 7332 22 111 456677777777788888888888888 1111 012245666666666666777666777
Q ss_pred HHHHHHHHhh
Q psy9795 177 LHTAHSLFKR 186 (337)
Q Consensus 177 L~~L~~i~k~ 186 (337)
+.+|..+++.
T Consensus 213 l~~l~~~~~~ 222 (526)
T PF01602_consen 213 LRLLRRYAPM 222 (526)
T ss_dssp HHHHTTSTSS
T ss_pred HHHHHhcccC
Confidence 7777766654
No 28
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=92.03 E-value=17 Score=37.76 Aligned_cols=49 Identities=20% Similarity=0.192 Sum_probs=21.6
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCCCH
Q psy9795 121 GLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDF 170 (337)
Q Consensus 121 ~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~ 170 (337)
+.++++.-+.+..||.+....|-.+++.. |+.=+-+.+.|+|+++++|+
T Consensus 62 ~a~~DLcEDed~~iR~~aik~lp~~ck~~-~~~v~kvaDvL~QlL~tdd~ 110 (556)
T PF05918_consen 62 NAQLDLCEDEDVQIRKQAIKGLPQLCKDN-PEHVSKVADVLVQLLQTDDP 110 (556)
T ss_dssp HHHHHHHT-SSHHHHHHHHHHGGGG--T---T-HHHHHHHHHHHTT---H
T ss_pred HHHHHHHhcccHHHHHHHHHhHHHHHHhH-HHHHhHHHHHHHHHHhcccH
Confidence 34444444445556666555555555543 33335555666666665544
No 29
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=91.41 E-value=4 Score=36.62 Aligned_cols=137 Identities=11% Similarity=0.094 Sum_probs=76.4
Q ss_pred hhHhhhccchhh-----HHHHHHhhcccCCCCChhhhHHHHHHHHHHHhCCChHHHH-HHHHH--hCCCChHHHHHHHHH
Q psy9795 21 QCLEDMCDRNGE-----FFCSTQGVPNHDKNIQLESRSPTENFLESVETNQNYPLLI-LTLVE--RADVDMTIRIAGAVA 92 (337)
Q Consensus 21 ~~~~~~~~~~~~-----~~~~l~~tL~~~~spD~~~Rk~AE~~L~~~~~~pgf~~~L-l~i~~--~~~~~~~iRq~AaI~ 92 (337)
+++.+++...+. ...++..++.-..++...+|+.|.+-|..+-..-++...+ ..++. ..+-+..+|..++.+
T Consensus 75 ~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~ 154 (228)
T PF12348_consen 75 QLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSKNPQVREECAEW 154 (228)
T ss_dssp HHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S-HHHHHHHHHH
T ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 456666654442 2224444555556667789999999999987765532222 33332 223468999999999
Q ss_pred HhccccccCcccCCCCCCCCHH-HHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhC
Q psy9795 93 FKNYVKRNWPLVEDEPDKIHAS-DREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFG 166 (337)
Q Consensus 93 LKN~V~~~W~~~~~~~~~i~~e-~K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~ 166 (337)
+...+.+.+... ..+... .-..+...+..++.++++.||...-.++..+.++ ||+--..+++.+.
T Consensus 155 l~~~l~~~~~~~----~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~-----~~~~a~~~~~~l~ 220 (228)
T PF12348_consen 155 LAIILEKWGSDS----SVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSH-----FPERAESILSMLD 220 (228)
T ss_dssp HHHHHTT---------GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH-----H-HHH--------
T ss_pred HHHHHHHccchH----hhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH-----CCHhhccchhcch
Confidence 999987755111 123221 2355677777788888888998888888888665 6766666665443
No 30
>PRK09687 putative lyase; Provisional
Probab=90.76 E-value=3.4 Score=39.02 Aligned_cols=116 Identities=13% Similarity=0.083 Sum_probs=60.4
Q ss_pred CCChhhhHHHHHHHHHHHhC----CChHHHHHHHHHhCCCChHHHHHHHHHHhcccccc--CcccCCCCCCCCHHHHHHH
Q psy9795 46 NIQLESRSPTENFLESVETN----QNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRN--WPLVEDEPDKIHASDREAI 119 (337)
Q Consensus 46 spD~~~Rk~AE~~L~~~~~~----pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~--W~~~~~~~~~i~~e~K~~I 119 (337)
|+|+.+|..|=.-|-++... +.....|..++.+ +.+..||..|+-.|=+.-... |. ...
T Consensus 65 ~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~-D~d~~VR~~A~~aLG~~~~~~~~~~--------------~~a 129 (280)
T PRK09687 65 SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE-DKSACVRASAINATGHRCKKNPLYS--------------PKI 129 (280)
T ss_pred CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc-CCCHHHHHHHHHHHhcccccccccc--------------hHH
Confidence 44556666666555555432 1234444444333 234566655555554431110 10 112
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q psy9795 120 KGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSL 183 (337)
Q Consensus 120 K~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i 183 (337)
.+.+...+.+.+..||...+.++..|.. ++-++.|+..++++|....+.+...|..+
T Consensus 130 ~~~l~~~~~D~~~~VR~~a~~aLg~~~~-------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~ 186 (280)
T PRK09687 130 VEQSQITAFDKSTNVRFAVAFALSVIND-------EAAIPLLINLLKDPNGDVRNWAAFALNSN 186 (280)
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHhccCC-------HHHHHHHHHHhcCCCHHHHHHHHHHHhcC
Confidence 3334444555556677666666654321 45677777777777776677777777766
No 31
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=90.75 E-value=15 Score=34.79 Aligned_cols=155 Identities=10% Similarity=0.075 Sum_probs=101.6
Q ss_pred HHHHHhhc-ccCCCCChhhhHHHHHHHHHHHh-----CCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCccc-CC
Q psy9795 34 FCSTQGVP-NHDKNIQLESRSPTENFLESVET-----NQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLV-ED 106 (337)
Q Consensus 34 ~~~l~~tL-~~~~spD~~~Rk~AE~~L~~~~~-----~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~-~~ 106 (337)
..++.+.. -+-.|+|+.+|+.|=+-|--+.- ...+...+.+.+.+ + +..+|..|.=.+=..+..|=... +.
T Consensus 25 ~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~-~-~~~v~~~al~~l~Dll~~~g~~~~~~ 102 (298)
T PF12719_consen 25 ESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQK-D-DEEVKITALKALFDLLLTHGIDIFDS 102 (298)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHh-C-CHHHHHHHHHHHHHHHHHcCchhccc
Confidence 34555544 45678899999999887765432 23466777777744 3 78888887644434443331110 00
Q ss_pred CCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhh
Q psy9795 107 EPDKIHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKR 186 (337)
Q Consensus 107 ~~~~i~~e~K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~ 186 (337)
....-.......+-+.+...+.+.++.++...++.++.+.-++--..||+++..|+-..=++.......--+||..++..
T Consensus 103 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~ 182 (298)
T PF12719_consen 103 ESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPV 182 (298)
T ss_pred hhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHH
Confidence 00001234456677788888888888899999999999998876555799999988776544322234566889999999
Q ss_pred hhhh
Q psy9795 187 YRHE 190 (337)
Q Consensus 187 yr~~ 190 (337)
|-+.
T Consensus 183 y~~s 186 (298)
T PF12719_consen 183 YASS 186 (298)
T ss_pred HHcC
Confidence 8764
No 32
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=90.69 E-value=19 Score=36.40 Aligned_cols=123 Identities=15% Similarity=0.153 Sum_probs=90.3
Q ss_pred CCChhhhHHHHHHHHHHHh-CCChHHHHHHHHHh--CCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHHHHHHH
Q psy9795 46 NIQLESRSPTENFLESVET-NQNYPLLILTLVER--ADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIKGL 122 (337)
Q Consensus 46 spD~~~Rk~AE~~L~~~~~-~pgf~~~Ll~i~~~--~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~~IK~~ 122 (337)
|.|...|+-+--.+..+.. .|+.......-+.+ .+.++.+|-.|.-.+=|.. +++--+.+-..
T Consensus 53 s~~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~--------------~~~~~~~l~~~ 118 (526)
T PF01602_consen 53 SKDLELKRLGYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIR--------------TPEMAEPLIPD 118 (526)
T ss_dssp SSSHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH---------------SHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc--------------ccchhhHHHHH
Confidence 6677888888888887655 45533333333322 1235677877766665542 24445667777
Q ss_pred HHHHHccCCHHHHHHHHHHHHHHHhhhCCCCChH-HHHHHHHhhCCCCHHHHHHHHHHHHHH
Q psy9795 123 ILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPS-LITDMVAKFGTGDFHIINGVLHTAHSL 183 (337)
Q Consensus 123 Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~WPe-Ll~~L~~~l~s~d~~~~~~aL~~L~~i 183 (337)
+...+.+..+.||+..+.++..|.+. +|+.-+. +++.+.+++.+.|+..+.+|+.++.++
T Consensus 119 v~~ll~~~~~~VRk~A~~~l~~i~~~-~p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 119 VIKLLSDPSPYVRKKAALALLKIYRK-DPDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp HHHHHHSSSHHHHHHHHHHHHHHHHH-CHCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred HHHHhcCCchHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH
Confidence 78888888889999999999999988 4766665 799999999888999999999999999
No 33
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=90.66 E-value=5.6 Score=29.62 Aligned_cols=85 Identities=16% Similarity=0.207 Sum_probs=59.8
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhh
Q psy9795 70 LLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSD 149 (337)
Q Consensus 70 ~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~D 149 (337)
..|++.+.+ +.+..+|..|+-.|-+. +. ...-..|++.+.+.+..||.+.+.+++.|.
T Consensus 2 ~~L~~~l~~-~~~~~vr~~a~~~L~~~----~~--------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~--- 59 (88)
T PF13646_consen 2 PALLQLLQN-DPDPQVRAEAARALGEL----GD--------------PEAIPALIELLKDEDPMVRRAAARALGRIG--- 59 (88)
T ss_dssp HHHHHHHHT-SSSHHHHHHHHHHHHCC----TH--------------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH---
T ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHc----CC--------------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC---
Confidence 457777755 34789999888888622 21 245667777887777899999999999885
Q ss_pred CCCCChHHHHHHHHhhCCCC-HHHHHHHHHHH
Q psy9795 150 FPDKWPSLITDMVAKFGTGD-FHIINGVLHTA 180 (337)
Q Consensus 150 fP~~WPeLl~~L~~~l~s~d-~~~~~~aL~~L 180 (337)
.|+.++.|.+.+.+++ ......+..+|
T Consensus 60 ----~~~~~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 60 ----DPEAIPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp ----HHHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence 3678888888887764 33356666655
No 34
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=90.45 E-value=7.1 Score=34.03 Aligned_cols=93 Identities=11% Similarity=0.015 Sum_probs=71.9
Q ss_pred hHHHHHHHHHHhccccccCcccCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHH
Q psy9795 83 MTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMV 162 (337)
Q Consensus 83 ~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~ 162 (337)
+.+|.-|.+.+=-...++=. .+ +..-..+...|.+.++.||.+...+++.++..|+-.-.+.++..++
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~-------~v-----e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l 69 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPN-------LV-----EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRIL 69 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcH-------HH-----HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHH
Confidence 46677777766655555311 11 2234467788888889999999999999999998665577779999
Q ss_pred HhhCCCCHHHHHHHHHHHHHHHhhh
Q psy9795 163 AKFGTGDFHIINGVLHTAHSLFKRY 187 (337)
Q Consensus 163 ~~l~s~d~~~~~~aL~~L~~i~k~y 187 (337)
.++..+|+.....|-.++.++.++.
T Consensus 70 ~~l~D~~~~Ir~~A~~~~~e~~~~~ 94 (178)
T PF12717_consen 70 KLLVDENPEIRSLARSFFSELLKKR 94 (178)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHhc
Confidence 9998889999999999999999874
No 35
>KOG2023|consensus
Probab=90.44 E-value=12 Score=39.46 Aligned_cols=178 Identities=8% Similarity=0.173 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhhCCC---CChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhhhhhhhh
Q psy9795 117 EAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPD---KWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRYRHEFKS 193 (337)
Q Consensus 117 ~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~---~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~yr~~~~s 193 (337)
..|++.+++++.++.+.||...-..+..+.+.-|+. .-.++++.+.+.++..+.....+|.-.+++++-+.-
T Consensus 661 snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g----- 735 (885)
T KOG2023|consen 661 SNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPENISVCNNAIWAIGEIALKMG----- 735 (885)
T ss_pred ccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhc-----
Confidence 448888888888888899999888999999887764 345788888877777777778899999999998752
Q ss_pred hhhHHHHHHHHHHhhHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHhhhccccCChHHHHHhHHHHHHHH----
Q psy9795 194 QKLWTEIKFVLDNFAKPFTELFKATINLVGEHKDNPTALKVIYNSLVVSCKIFYSLNFQDLPEYFEDNMVVWMPAL---- 269 (337)
Q Consensus 194 ~~l~~el~~il~~~~~~L~~lf~~l~~~~~~~~~~~~~~~~~~e~l~lilKif~~~~~~~lp~~~e~~l~~W~~~f---- 269 (337)
.+.. +.+. .+...+..+++.... + +.++|-.-..+...-......+.++++..+.+||...
T Consensus 736 ~~~~----~~v~-------~vl~~L~~iin~~~~-~---~tllENtAITIGrLg~~~Pe~vAp~l~~f~~pWc~sl~~i~ 800 (885)
T KOG2023|consen 736 LKMK----QYVS-------PVLEDLITIINRQNT-P---KTLLENTAITIGRLGYICPEEVAPHLDSFMRPWCTSLRNID 800 (885)
T ss_pred hhhh----hHHH-------HHHHHHHHHhcccCc-h---HHHHHhhhhhhhhhhccCHHhcchhHHHHHHHHHHHhcccc
Confidence 2221 1122 222333344433222 2 1233322333333444444555566778888898743
Q ss_pred ------------HHhhccCCCCCCcc-chhhhhhhhccchhHHHhhhHHHHHHHHHHh
Q psy9795 270 ------------HNLLVTDVPCLRTD-SIFVNSFRRFISDVETRRRAACDFVKILCKY 314 (337)
Q Consensus 270 ------------~~iL~~~~p~l~~d-~~~~r~~~~~~~~~~~~k~~~~~~~~~~~k~ 314 (337)
+.+++......-.| .-.+--.-.|..+-+.++..++.+.+.|...
T Consensus 801 DneEK~sAFrG~c~mi~vNp~~vv~~~~f~c~aiAsw~np~~~l~~~f~kiL~g~k~q 858 (885)
T KOG2023|consen 801 DNEEKESAFRGLCNMINVNPSGVVSSFIFICDAIASWSNPEDDLRDEFYKILQGFKNQ 858 (885)
T ss_pred cchhHHHHHHHHHHheeeCchhhhhhhHHHHHHHhcccChHHHHHHHHHHHHHHHHHH
Confidence 33343332221111 0001112355556666776666666666443
No 36
>KOG1241|consensus
Probab=90.42 E-value=8.8 Score=40.89 Aligned_cols=208 Identities=12% Similarity=0.106 Sum_probs=118.5
Q ss_pred hhHhhhccchhhHHHHHHhhcccCCCCChhhhHHHHHHHHHHHh--CCChHHHHHHHHHhCCCChHHHHHHHHHHhcccc
Q psy9795 21 QCLEDMCDRNGEFFCSTQGVPNHDKNIQLESRSPTENFLESVET--NQNYPLLILTLVERADVDMTIRIAGAVAFKNYVK 98 (337)
Q Consensus 21 ~~~~~~~~~~~~~~~~l~~tL~~~~spD~~~Rk~AE~~L~~~~~--~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~ 98 (337)
|-.++=+++-.+|.-.+.+.|.++.+++ ..|..|--+||..-. .|.--.-..+--. +.+.++|. +.|+++.
T Consensus 24 ~l~~~~~~nf~~F~~~Ls~vl~n~~~~~-~~R~~AGL~LKN~L~akd~~~k~~~~qRWl--~l~~e~re----qVK~~il 96 (859)
T KOG1241|consen 24 QLEQAQSQNFPQFLVLLSEVLANDNSSD-VARMAAGLQLKNSLTAKDPERKQQYQQRWL--QLPAEIRE----QVKNNIL 96 (859)
T ss_pred HHHHHHhccHHHHHHHHHHHHhccCCcH-HHHHHHhHHHhhhhccCCHHHHHHHHHHHH--cCCHHHHH----HHHHHHH
Confidence 3344445555689999999998888766 789999999986432 3433222222222 34556655 3555555
Q ss_pred ccCcccCCC-------------CCCCCHHHHHHHHHHHHHHHccCC-HHHHHHHHHHHHHHHhhhCCC----CChHHHHH
Q psy9795 99 RNWPLVEDE-------------PDKIHASDREAIKGLILHLMLTSP-EAIQKQLSDATAIIGKSDFPD----KWPSLITD 160 (337)
Q Consensus 99 ~~W~~~~~~-------------~~~i~~e~K~~IK~~Ll~~L~~~~-~~Ir~ql~~~i~~Ia~~DfP~----~WPeLl~~ 160 (337)
+--...+.. ...+|...=..+-..++.-..+.+ ..++..-.++|..|+.+--|+ .-.+.+..
T Consensus 97 ~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~iLta 176 (859)
T KOG1241|consen 97 RTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDILTA 176 (859)
T ss_pred HHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHH
Confidence 544322211 012332222222223333333332 468999999999999876663 55667777
Q ss_pred HHHhhCCC--CHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHhcccCCChhHHHHHHHH
Q psy9795 161 MVAKFGTG--DFHIINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFTELFKATINLVGEHKDNPTALKVIYNS 238 (337)
Q Consensus 161 L~~~l~s~--d~~~~~~aL~~L~~i~k~yr~~~~s~~l~~el~~il~~~~~~L~~lf~~l~~~~~~~~~~~~~~~~~~e~ 238 (337)
+++..... +.+.+..|+.+|+.-.+=-+.-|.. | .|.++|++.+.+. ....+..-...+++|
T Consensus 177 Iv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~-E--~ern~iMqvvcEa-------------tq~~d~~i~~aa~~C 240 (859)
T KOG1241|consen 177 IVQGMRKEETSAAVRLAALNALYNSLEFTKANFNN-E--MERNYIMQVVCEA-------------TQSPDEEIQVAAFQC 240 (859)
T ss_pred HHhhccccCCchhHHHHHHHHHHHHHHHHHHhhcc-H--hhhceeeeeeeec-------------ccCCcHHHHHHHHHH
Confidence 77776653 6667788888887654422211211 2 2556666655441 112233333556788
Q ss_pred HHHHHHHhhhccc
Q psy9795 239 LVVSCKIFYSLNF 251 (337)
Q Consensus 239 l~lilKif~~~~~ 251 (337)
+..|...||....
T Consensus 241 lvkIm~LyY~~m~ 253 (859)
T KOG1241|consen 241 LVKIMSLYYEFME 253 (859)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888776543
No 37
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=88.61 E-value=1.2 Score=27.25 Aligned_cols=30 Identities=3% Similarity=0.056 Sum_probs=24.4
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHHHhh
Q psy9795 157 LITDMVAKFGTGDFHIINGVLHTAHSLFKR 186 (337)
Q Consensus 157 Ll~~L~~~l~s~d~~~~~~aL~~L~~i~k~ 186 (337)
++|.++++++++++..+..|..+|..+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 578888888888888888999998888764
No 38
>KOG1993|consensus
Probab=88.38 E-value=34 Score=36.96 Aligned_cols=215 Identities=16% Similarity=0.161 Sum_probs=105.1
Q ss_pred hHHHHHHhhcccCCCCChhh----hHHHHHHHHHHHh-------CCChHHHHHHHHHhCCCChHHHHHHHHHHhcccccc
Q psy9795 32 EFFCSTQGVPNHDKNIQLES----RSPTENFLESVET-------NQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRN 100 (337)
Q Consensus 32 ~~~~~l~~tL~~~~spD~~~----Rk~AE~~L~~~~~-------~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~ 100 (337)
+|..-+++.+-...+-|... |+..---+.+.-. .|-.-.+++.++.+ +.|..||..++-.+|-.|..
T Consensus 480 dF~~Wl~~~llpEl~~~~~~~RiiRRRVa~ilg~Wvsvq~~~e~k~l~Y~a~lnLL~d-~~D~vV~Ltt~~tlkl~vDD- 557 (978)
T KOG1993|consen 480 DFDKWLQEALLPELANDHGNSRIIRRRVAWILGQWVSVQQKLELKPLLYCAFLNLLQD-QNDLVVRLTTARTLKLVVDD- 557 (978)
T ss_pred CHHHHHHHhhCHHhhhcccchhHHHHHHHHHHhhhhheechHhHHHHHHHHHHHhcCc-cccceeehHHHHHHHHhhhh-
Confidence 46666666665554444333 3333333444322 23334455566555 45899999999999988854
Q ss_pred CcccCCCCCCCCHHHHHHHHHHHHHHH---ccCCH--HHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhC------CCC
Q psy9795 101 WPLVEDEPDKIHASDREAIKGLILHLM---LTSPE--AIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFG------TGD 169 (337)
Q Consensus 101 W~~~~~~~~~i~~e~K~~IK~~Ll~~L---~~~~~--~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~------s~d 169 (337)
|+-.++...++- +.+-..+...+ ..++. .|-+-++..|.....+-- | ....+++.+. ++.
T Consensus 558 ~nF~~dsFlp~l----enlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~----P-~~~~ivq~lp~LWe~s~~e 628 (978)
T KOG1993|consen 558 WNFSEDSFLPYL----ENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIA----P-YASTIVQYLPLLWEESEEE 628 (978)
T ss_pred ccCChhhhhhhH----HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhh----H-HHHHHHHHHHHHHhhhccC
Confidence 763333211111 11222222222 22222 233333444433332211 1 3333333332 122
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhh-----------------------------hHHHHHHHHHHhhHHHHHHHHHHHH
Q psy9795 170 FHIINGVLHTAHSLFKRYRHEFKSQK-----------------------------LWTEIKFVLDNFAKPFTELFKATIN 220 (337)
Q Consensus 170 ~~~~~~aL~~L~~i~k~yr~~~~s~~-----------------------------l~~el~~il~~~~~~L~~lf~~l~~ 220 (337)
+-..-+.|.+|+.++...+++ |.+ ++.-.-.-.+.+.|-|+.+||.+..
T Consensus 629 ~lLr~alL~~L~~lV~alg~q--S~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~ll~L~p~l~~ 706 (978)
T KOG1993|consen 629 PLLRCALLATLRNLVNALGAQ--SFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTPELLLLFPHLLY 706 (978)
T ss_pred cHHHHHHHHHHHHHHHHhccC--CccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcccccCHHHHHHHHHHHH
Confidence 223445566777777665442 112 2211112235677788888998888
Q ss_pred HhcccCCChhHHHHHHHHHHHHHHHhhhccccCChHHHHHhHHHHHHHH
Q psy9795 221 LVGEHKDNPTALKVIYNSLVVSCKIFYSLNFQDLPEYFEDNMVVWMPAL 269 (337)
Q Consensus 221 ~~~~~~~~~~~~~~~~e~l~lilKif~~~~~~~lp~~~e~~l~~W~~~f 269 (337)
++.. ..+.|..+++|.++=+..+-+.++.+.....+..+
T Consensus 707 ~iE~----------ste~L~t~l~Ii~sYilLd~~~fl~~y~~~i~k~~ 745 (978)
T KOG1993|consen 707 IIEQ----------STENLPTVLMIISSYILLDNTVFLNDYAFGIFKKL 745 (978)
T ss_pred HHHh----------hhhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 7743 23445667777766666666655544433333333
No 39
>KOG1824|consensus
Probab=87.33 E-value=13 Score=40.72 Aligned_cols=135 Identities=13% Similarity=0.102 Sum_probs=88.7
Q ss_pred hhhHHHHHHhhcccCCCCChhhhHHHHHHHHHHHh--CCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCC
Q psy9795 30 NGEFFCSTQGVPNHDKNIQLESRSPTENFLESVET--NQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDE 107 (337)
Q Consensus 30 ~~~~~~~l~~tL~~~~spD~~~Rk~AE~~L~~~~~--~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~ 107 (337)
+.+++..+ +++=+||..+++++|-..|-.+.. -|.|+..+++.+.++. .-+.+=..-||-.|.+.=. +
T Consensus 855 ~~e~~~~i---ieaf~sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqp---k~QyLLLhSlkevi~~~sv--d-- 924 (1233)
T KOG1824|consen 855 QNELKDTI---IEAFNSPSEDVKSAASYALGSLAVGNLPKYLPFILEQIESQP---KRQYLLLHSLKEVIVSASV--D-- 924 (1233)
T ss_pred chhhHHHH---HHHcCCChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcch---HhHHHHHHHHHHHHHHhcc--c--
Confidence 34566655 445568889999999999987654 4789999998887632 2223444567777754211 1
Q ss_pred CCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy9795 108 PDKIHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAH 181 (337)
Q Consensus 108 ~~~i~~e~K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~ 181 (337)
.+ -..-+.|-..|..-.-....-.|+.+++|+..++..| | ..|+|.|-..+.|+++...-.++.+.+
T Consensus 925 --~~-~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~e-p---esLlpkL~~~~~S~a~~~rs~vvsavK 991 (1233)
T KOG1824|consen 925 --GL-KPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIE-P---ESLLPKLKLLLRSEASNTRSSVVSAVK 991 (1233)
T ss_pred --hh-hhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCC-h---HHHHHHHHHHhcCCCcchhhhhhheee
Confidence 00 1111223333333333334678999999999999987 3 369999999999998877666665543
No 40
>KOG1242|consensus
Probab=87.04 E-value=40 Score=35.05 Aligned_cols=202 Identities=14% Similarity=0.105 Sum_probs=106.2
Q ss_pred CCChHHHHHHHHHhC-CCChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHHHHHHHHHHHHcc--CCHHHHHHHHHH
Q psy9795 65 NQNYPLLILTLVERA-DVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIKGLILHLMLT--SPEAIQKQLSDA 141 (337)
Q Consensus 65 ~pgf~~~Ll~i~~~~-~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~~IK~~Ll~~L~~--~~~~Ir~ql~~~ 141 (337)
.|.....+-.++.+- +....+|++|.-..|-.... -. +...|..+...|...... ..+.---++..+
T Consensus 211 EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~-~~---------~~aVK~llpsll~~l~~~kWrtK~aslellg~ 280 (569)
T KOG1242|consen 211 EPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRC-LS---------AYAVKLLLPSLLGSLLEAKWRTKMASLELLGA 280 (569)
T ss_pred CchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHh-cC---------cchhhHhhhhhHHHHHHHhhhhHHHHHHHHHH
Confidence 466666666666653 34567888776555544322 11 112233333222222222 112222233333
Q ss_pred HHHHHhhhCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHHH-
Q psy9795 142 TAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFTELFKATIN- 220 (337)
Q Consensus 142 i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~yr~~~~s~~l~~el~~il~~~~~~L~~lf~~l~~- 220 (337)
++..+..-.-..-|+++|.+.+.+.+..+.....|-.|+..++..-+ .+++-.-+..+++.+.+|=-. -+.++.
T Consensus 281 m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svid----N~dI~~~ip~Lld~l~dp~~~-~~e~~~~ 355 (569)
T KOG1242|consen 281 MADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVID----NPDIQKIIPTLLDALADPSCY-TPECLDS 355 (569)
T ss_pred HHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhc----cHHHHHHHHHHHHHhcCcccc-hHHHHHh
Confidence 33333222223678999999999999999999999999999888753 233333334444444443200 111111
Q ss_pred Hhccc---CCChhHHHHH------------HHHHHHHHHHhhhcccc-CChHHHHHhHHHHHHHHHHhhccCCCCCC
Q psy9795 221 LVGEH---KDNPTALKVI------------YNSLVVSCKIFYSLNFQ-DLPEYFEDNMVVWMPALHNLLVTDVPCLR 281 (337)
Q Consensus 221 ~~~~~---~~~~~~~~~~------------~e~l~lilKif~~~~~~-~lp~~~e~~l~~W~~~f~~iL~~~~p~l~ 281 (337)
+.... .-+++++... .++-+..++|+..++.. +=|.-+.+.++.-+..+...+..++|...
T Consensus 356 L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR 432 (569)
T KOG1242|consen 356 LGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVR 432 (569)
T ss_pred hcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHH
Confidence 11100 0011111111 12335567777766553 35777778888888888888888888643
No 41
>PRK09687 putative lyase; Provisional
Probab=85.99 E-value=18 Score=34.10 Aligned_cols=122 Identities=12% Similarity=0.079 Sum_probs=82.2
Q ss_pred CCCChhhhHHHHHHHHHHHhCCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHHHHHHHHH
Q psy9795 45 KNIQLESRSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIKGLIL 124 (337)
Q Consensus 45 ~spD~~~Rk~AE~~L~~~~~~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~~IK~~Ll 124 (337)
.++|..+|..|-..|.++. .+.....+..++.+. +..+|..|+-.|-..-. . . .. ....=..|.
T Consensus 33 ~d~d~~vR~~A~~aL~~~~-~~~~~~~l~~ll~~~--d~~vR~~A~~aLg~lg~---~---~---~~----~~~a~~~L~ 96 (280)
T PRK09687 33 DDHNSLKRISSIRVLQLRG-GQDVFRLAIELCSSK--NPIERDIGADILSQLGM---A---K---RC----QDNVFNILN 96 (280)
T ss_pred hCCCHHHHHHHHHHHHhcC-cchHHHHHHHHHhCC--CHHHHHHHHHHHHhcCC---C---c---cc----hHHHHHHHH
Confidence 4567799999999998775 355666666665543 78999999977765321 1 0 00 111222333
Q ss_pred HHH-ccCCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q psy9795 125 HLM-LTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSL 183 (337)
Q Consensus 125 ~~L-~~~~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i 183 (337)
..+ .+.+..||...+.++..+.... +...|.+++.+...+.+++......+...|..+
T Consensus 97 ~l~~~D~d~~VR~~A~~aLG~~~~~~-~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~ 155 (280)
T PRK09687 97 NLALEDKSACVRASAINATGHRCKKN-PLYSPKIVEQSQITAFDKSTNVRFAVAFALSVI 155 (280)
T ss_pred HHHhcCCCHHHHHHHHHHHhcccccc-cccchHHHHHHHHHhhCCCHHHHHHHHHHHhcc
Confidence 343 3356789999999999986543 233588888888888888888888888888654
No 42
>KOG1991|consensus
Probab=85.64 E-value=62 Score=35.69 Aligned_cols=92 Identities=10% Similarity=0.112 Sum_probs=62.4
Q ss_pred CCChHHHHHHHHHh------CC-----CChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHHHHHHHHHHHHccCCHH
Q psy9795 65 NQNYPLLILTLVER------AD-----VDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIKGLILHLMLTSPEA 133 (337)
Q Consensus 65 ~pgf~~~Ll~i~~~------~~-----~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~~IK~~Ll~~L~~~~~~ 133 (337)
-|++...+.+|+.+ +. -+-..|.+|++. ..+.+. .+...+--..+-++++..+.+.-..
T Consensus 408 l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~--~~L~K~--------s~~~~~mE~flv~hVfP~f~s~~g~ 477 (1010)
T KOG1991|consen 408 LPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLA--SILLKK--------SPYKSQMEYFLVNHVFPEFQSPYGY 477 (1010)
T ss_pred hhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHH--HHHccC--------CchHHHHHHHHHHHhhHhhcCchhH
Confidence 47899999999882 11 123455565554 233221 1233444466777777777777789
Q ss_pred HHHHHHHHHHHHHhhhCCC--CChHHHHHHHHhhC
Q psy9795 134 IQKQLSDATAIIGKSDFPD--KWPSLITDMVAKFG 166 (337)
Q Consensus 134 Ir~ql~~~i~~Ia~~DfP~--~WPeLl~~L~~~l~ 166 (337)
+|.+.|.+++.++..||++ .--+.++...+++.
T Consensus 478 Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~ 512 (1010)
T KOG1991|consen 478 LRARACWVLSQFSSIDFKDPNNLSEALELTHNCLL 512 (1010)
T ss_pred HHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhc
Confidence 9999999999999999984 45566777777776
No 43
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=85.54 E-value=14 Score=36.46 Aligned_cols=30 Identities=50% Similarity=0.821 Sum_probs=20.9
Q ss_pred cchhHHHhhhHHHHHHHHHHhhhhhhhhcc
Q psy9795 294 ISDVETRRRAACDFVKILCKYMEDKMMGTS 323 (337)
Q Consensus 294 ~~~~~~~k~~~~~~~~~~~k~~~~~~~~~~ 323 (337)
|+...+.|++.|+|+...+|+.+..+..+.
T Consensus 221 ~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~ 250 (370)
T PF08506_consen 221 GSDSDTRRRAACDFLRSLCKKFEKQVTSIL 250 (370)
T ss_dssp SS---SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCcHHHHHHHHHHHHHHHhHHHHHHH
Confidence 567788888899999998887777655544
No 44
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=84.87 E-value=6.5 Score=33.91 Aligned_cols=39 Identities=21% Similarity=0.331 Sum_probs=30.1
Q ss_pred CCChHHHHHHHHhhCCC-CHHHHHHHHHHHHHH--Hhhhhhh
Q psy9795 152 DKWPSLITDMVAKFGTG-DFHIINGVLHTAHSL--FKRYRHE 190 (337)
Q Consensus 152 ~~WPeLl~~L~~~l~s~-d~~~~~~aL~~L~~i--~k~yr~~ 190 (337)
..+|+|++.+.+.+.++ +...+.-++++++-+ ++.|+++
T Consensus 6 ~~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k 47 (160)
T PF11865_consen 6 LDYPELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHK 47 (160)
T ss_pred HHhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHh
Confidence 56899999999999876 556677888888875 4556665
No 45
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=82.81 E-value=15 Score=31.94 Aligned_cols=108 Identities=11% Similarity=0.122 Sum_probs=75.5
Q ss_pred ChhhhHHHHHHHHHHHh-CCC----hHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHHHHHHH
Q psy9795 48 QLESRSPTENFLESVET-NQN----YPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIKGL 122 (337)
Q Consensus 48 D~~~Rk~AE~~L~~~~~-~pg----f~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~~IK~~ 122 (337)
|+.+|..|=..+-.+-. .|+ +...+...+.++ ++.||..|.+.|.+.+.+.+.. + |..+=..
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~--~~~VR~~al~~Ls~Li~~d~ik-------~----k~~l~~~ 67 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDE--DPLVRKTALLVLSHLILEDMIK-------V----KGQLFSR 67 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHcCcee-------e----hhhhhHH
Confidence 45667777666655433 454 455666666654 6899999999999999876541 1 1233345
Q ss_pred HHHHHccCCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCC
Q psy9795 123 ILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTG 168 (337)
Q Consensus 123 Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~ 168 (337)
++.++.++++.||.....++..+...-.|+.-.+.+++++..+++.
T Consensus 68 ~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~ 113 (178)
T PF12717_consen 68 ILKLLVDENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNC 113 (178)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCc
Confidence 5667777888999999999999999877776667777777766653
No 46
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=82.35 E-value=16 Score=37.42 Aligned_cols=128 Identities=8% Similarity=0.066 Sum_probs=83.3
Q ss_pred ChhhhHHHHHHHHHHHh-------CCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHHHHH
Q psy9795 48 QLESRSPTENFLESVET-------NQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIK 120 (337)
Q Consensus 48 D~~~Rk~AE~~L~~~~~-------~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~~IK 120 (337)
+.+....+-.-|+.+-. .|++...|..-+.++ +..||.+|.-.+++.+... ... ...+.+ ..+=
T Consensus 51 ~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~--~~~Vr~l~l~~l~~~~~~~-~~~---~~~~~~---~~l~ 121 (503)
T PF10508_consen 51 NREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHP--SPKVRRLALKQLGRIARHS-EGA---AQLLVD---NELL 121 (503)
T ss_pred ChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCC-HHH---HHHhcC---ccHH
Confidence 33444555555554332 245666666666654 6899999999898887442 110 001111 2245
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHhhhCCCCChHH-----HHHHHHhhCCCCHHHHHHHHHHHHHHHhh
Q psy9795 121 GLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSL-----ITDMVAKFGTGDFHIINGVLHTAHSLFKR 186 (337)
Q Consensus 121 ~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~WPeL-----l~~L~~~l~s~d~~~~~~aL~~L~~i~k~ 186 (337)
..++.++.+.+..|.+..+.++..|+++. ..-..+ +..|.+.+..+|...+..++.++-.+++.
T Consensus 122 ~~i~~~L~~~d~~Va~~A~~~L~~l~~~~--~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~ 190 (503)
T PF10508_consen 122 PLIIQCLRDPDLSVAKAAIKALKKLASHP--EGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASH 190 (503)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHhCCc--hhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhc
Confidence 56788888888899999999999999863 333344 78888888775655566777777777664
No 47
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=81.88 E-value=33 Score=29.63 Aligned_cols=54 Identities=20% Similarity=0.317 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhhhCCCCCh-----HHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhhhhh
Q psy9795 137 QLSDATAIIGKSDFPDKWP-----SLITDMVAKFGTGDFHIINGVLHTAHSLFKRYRHE 190 (337)
Q Consensus 137 ql~~~i~~Ia~~DfP~~WP-----eLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~yr~~ 190 (337)
.+.+++..+....=|+.|+ +++|.+..+++|....++.+||.+|..+++.|...
T Consensus 45 vlvD~L~vl~~~~~~~~~tLd~c~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~~f~~~ 103 (164)
T PF13925_consen 45 VLVDVLSVLNQSLKPEKWTLDLCVDLLPLIEELLQSKYESYISVALEMLRSILKKFGPV 103 (164)
T ss_pred HHHHHHHHHHHhcCcCcccHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 4577788888555567785 89999999999999999999999999999998654
No 48
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=81.82 E-value=16 Score=40.34 Aligned_cols=110 Identities=12% Similarity=0.138 Sum_probs=68.5
Q ss_pred CCCChhhhHHHHHHHHHHHhCCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHHHHHHHHH
Q psy9795 45 KNIQLESRSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIKGLIL 124 (337)
Q Consensus 45 ~spD~~~Rk~AE~~L~~~~~~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~~IK~~Ll 124 (337)
.++|+.+|+.|=+.|..+. .++....|...+.+ .+..||..|+-.|..... .+. .. ..+.
T Consensus 631 ~D~d~~VR~~Av~~L~~~~-~~~~~~~L~~aL~D--~d~~VR~~Aa~aL~~l~~-~~~----------~~------~~L~ 690 (897)
T PRK13800 631 ADPDPGVRRTAVAVLTETT-PPGFGPALVAALGD--GAAAVRRAAAEGLRELVE-VLP----------PA------PALR 690 (897)
T ss_pred cCCCHHHHHHHHHHHhhhc-chhHHHHHHHHHcC--CCHHHHHHHHHHHHHHHh-ccC----------ch------HHHH
Confidence 3788999999999998875 46778888877754 378999999888865532 111 00 1333
Q ss_pred HHHccCCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy9795 125 HLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHS 182 (337)
Q Consensus 125 ~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~ 182 (337)
..|.+.+..||.....++..+...+ ...+...+.++|+.....++..|..
T Consensus 691 ~~L~~~d~~VR~~A~~aL~~~~~~~--------~~~l~~~L~D~d~~VR~~Av~aL~~ 740 (897)
T PRK13800 691 DHLGSPDPVVRAAALDVLRALRAGD--------AALFAAALGDPDHRVRIEAVRALVS 740 (897)
T ss_pred HHhcCCCHHHHHHHHHHHHhhccCC--------HHHHHHHhcCCCHHHHHHHHHHHhc
Confidence 4444455666666666665543211 1234555666666666666666654
No 49
>PTZ00429 beta-adaptin; Provisional
Probab=80.28 E-value=92 Score=33.73 Aligned_cols=65 Identities=9% Similarity=0.129 Sum_probs=47.3
Q ss_pred HHHHHccCCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhhhh
Q psy9795 123 ILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRYRH 189 (337)
Q Consensus 123 Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~yr~ 189 (337)
|.+...+.+..++.....+|+.+|. -||......++.|++++..+. +.+.-++.++..|+++|..
T Consensus 373 L~eYa~d~D~ef~r~aIrAIg~lA~-k~~~~a~~cV~~Ll~ll~~~~-~~v~e~i~vik~IlrkyP~ 437 (746)
T PTZ00429 373 LAEYASGVDMVFVVEVVRAIASLAI-KVDSVAPDCANLLLQIVDRRP-ELLPQVVTAAKDIVRKYPE 437 (746)
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHHCcc
Confidence 3333334455677888888888884 578888889999999997653 2344578999999998854
No 50
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=79.27 E-value=10 Score=33.41 Aligned_cols=71 Identities=13% Similarity=0.111 Sum_probs=61.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhhhhh
Q psy9795 119 IKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRYRHE 190 (337)
Q Consensus 119 IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~yr~~ 190 (337)
.=..|+++..+++..+|....+++..|.+..+-+-| +-+|.++.+..+++......|..++..+.++|+..
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~-~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~ 79 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNPK-QCVPTLIALETSPNPSIRSRAYQLLKELHEKHESL 79 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH-HHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHH
Confidence 345678888888899999999999999999886555 58999999999999999999999999999999654
No 51
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=79.23 E-value=20 Score=39.58 Aligned_cols=46 Identities=17% Similarity=0.084 Sum_probs=29.6
Q ss_pred CCCChhhhHHHHHHHHHHHhCCChHHHHHHHHHhCCCChHHHHHHHHHHhcc
Q psy9795 45 KNIQLESRSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNY 96 (337)
Q Consensus 45 ~spD~~~Rk~AE~~L~~~~~~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~ 96 (337)
.++|+.+|..|=..|-.+... ..|+..+.+ .+..||..|+-.|-..
T Consensus 724 ~D~d~~VR~~Av~aL~~~~~~----~~l~~~l~D--~~~~VR~~aa~aL~~~ 769 (897)
T PRK13800 724 GDPDHRVRIEAVRALVSVDDV----ESVAGAATD--ENREVRIAVAKGLATL 769 (897)
T ss_pred cCCCHHHHHHHHHHHhcccCc----HHHHHHhcC--CCHHHHHHHHHHHHHh
Confidence 467778888888888765432 234444444 3578888877766544
No 52
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=77.38 E-value=1.1e+02 Score=33.07 Aligned_cols=63 Identities=17% Similarity=0.165 Sum_probs=47.1
Q ss_pred HHHHHccCCHHHHHHHHHHHHHHHhhhCCCCChHH-H-HHHHHhhCCCCHHHHHHHHHHHHHHHhh
Q psy9795 123 ILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSL-I-TDMVAKFGTGDFHIINGVLHTAHSLFKR 186 (337)
Q Consensus 123 Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~WPeL-l-~~L~~~l~s~d~~~~~~aL~~L~~i~k~ 186 (337)
+.+++-+....||+..+.|+..|-+.| |+-.+++ + ..+..++..+|+..+..|+..|+.+..+
T Consensus 132 ik~~l~d~~ayVRk~Aalav~kly~ld-~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 132 IKKLLTDPHAYVRKTAALAVAKLYRLD-KDLYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHccCCcHHHHHHHHHHHHHHHhcC-HhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 334444456789999999999999776 4556655 4 4444445567999999999999999887
No 53
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=77.12 E-value=10 Score=33.87 Aligned_cols=105 Identities=11% Similarity=0.172 Sum_probs=66.0
Q ss_pred hCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHHHHH---HHHHHHHccCCHHHHHHHHHHHHHHHhhh---CC
Q psy9795 78 RADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIK---GLILHLMLTSPEAIQKQLSDATAIIGKSD---FP 151 (337)
Q Consensus 78 ~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~~IK---~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~D---fP 151 (337)
.++.+-..|.-|...|++.++.+ ... ...+.--..+| ..+...+.+....|....+.+++.++... |.
T Consensus 16 ~~~~~W~~r~~al~~L~~l~~~~-~~~-----~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~ 89 (228)
T PF12348_consen 16 ESESDWEERVEALQKLRSLIKGN-APE-----DFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFE 89 (228)
T ss_dssp HT-SSHHHHHHHHHHHHHHHHH--B----------HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGH
T ss_pred CCccCHHHHHHHHHHHHHHHHcC-Ccc-----ccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHH
Confidence 34568899999999999999987 311 34456666677 33333333333456677788888887653 32
Q ss_pred CCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhhh
Q psy9795 152 DKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRYR 188 (337)
Q Consensus 152 ~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~yr 188 (337)
..-+.++|.|+..+.+++......|..||..+++.+.
T Consensus 90 ~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~ 126 (228)
T PF12348_consen 90 PYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS 126 (228)
T ss_dssp HHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC
Confidence 2335688888888888877788999999999999764
No 54
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=76.87 E-value=18 Score=27.95 Aligned_cols=72 Identities=17% Similarity=0.062 Sum_probs=49.2
Q ss_pred CChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHH
Q psy9795 66 QNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIKGLILHLMLTSPEAIQKQLSDATAII 145 (337)
Q Consensus 66 pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~I 145 (337)
.|.+..|++++.++ +..+|..|+-.|.|........ ...-.+..+-..+++.+...+..++...+.++..|
T Consensus 48 ~~~i~~l~~~l~~~--~~~v~~~a~~~L~~l~~~~~~~-------~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 48 AGGLPALVQLLKSE--DEEVVKAALWALRNLAAGPEDN-------KLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred CCChHHHHHHHhCC--CHHHHHHHHHHHHHHccCcHHH-------HHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 48888999988774 6899999999999997653210 00011122334566666666778999999888877
Q ss_pred H
Q psy9795 146 G 146 (337)
Q Consensus 146 a 146 (337)
+
T Consensus 119 ~ 119 (120)
T cd00020 119 A 119 (120)
T ss_pred h
Confidence 5
No 55
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=76.72 E-value=78 Score=33.00 Aligned_cols=177 Identities=11% Similarity=0.085 Sum_probs=79.7
Q ss_pred hccchhhHHHHHHhhcccCC-CCChhhhHHHHHHHHHHHh-CC-ChHHHHHHHHH-hCCCChHHHHHHHHHHhccccccC
Q psy9795 26 MCDRNGEFFCSTQGVPNHDK-NIQLESRSPTENFLESVET-NQ-NYPLLILTLVE-RADVDMTIRIAGAVAFKNYVKRNW 101 (337)
Q Consensus 26 ~~~~~~~~~~~l~~tL~~~~-spD~~~Rk~AE~~L~~~~~-~p-gf~~~Ll~i~~-~~~~~~~iRq~AaI~LKN~V~~~W 101 (337)
.|-++.++..-+..+|.+-+ +-|+..+..+...|.++-+ .| +.+..++.-+. +...+..+|--+.-+++..+..-=
T Consensus 86 ~ck~~~~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~ 165 (556)
T PF05918_consen 86 LCKDNPEHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLK 165 (556)
T ss_dssp G--T--T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-
T ss_pred HHHhHHHHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCc
Confidence 34444444333333333322 3466788888888877554 44 55555554443 223467788887777777776531
Q ss_pred cccCCCCCCCC--HHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHh---hhCCCCChHHHHHHHHhh------CCCCH
Q psy9795 102 PLVEDEPDKIH--ASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGK---SDFPDKWPSLITDMVAKF------GTGDF 170 (337)
Q Consensus 102 ~~~~~~~~~i~--~e~K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~---~DfP~~WPeLl~~L~~~l------~s~d~ 170 (337)
. ..+. +|....|.+.+-.+|.+....=-..+-.++...-. .+-+..=.+|++.+.+.. ..+|.
T Consensus 166 ~------~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~ 239 (556)
T PF05918_consen 166 P------ELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDP 239 (556)
T ss_dssp T------TTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSH
T ss_pred H------HHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCH
Confidence 1 1344 67777787777777765432111111122221111 111122234555555333 12355
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhHHH
Q psy9795 171 HIINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPF 211 (337)
Q Consensus 171 ~~~~~aL~~L~~i~k~yr~~~~s~~l~~el~~il~~~~~~L 211 (337)
+.+...+.|+..-..-|.-..+|.+ -++++.++++|.|
T Consensus 240 e~Idrli~C~~~Alp~fs~~v~Ssk---fv~y~~~kvlP~l 277 (556)
T PF05918_consen 240 ESIDRLISCLRQALPFFSRGVSSSK---FVNYMCEKVLPKL 277 (556)
T ss_dssp HHHHHHHHHHHHHGGG-BTTB--HH---HHHHHHHHTCCCT
T ss_pred HHHHHHHHHHHHhhHHhcCCCChHH---HHHHHHHHhcCCh
Confidence 6666666766664333322112222 3445555555533
No 56
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=76.46 E-value=16 Score=28.83 Aligned_cols=68 Identities=12% Similarity=0.093 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhh---CCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHh
Q psy9795 117 EAIKGLILHLMLTSPEAIQKQLSDATAIIGKSD---FPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFK 185 (337)
Q Consensus 117 ~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~D---fP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k 185 (337)
+.|=.-++.++.+.+..||-..|+++..|++.- .-...+++++.|...+...|.+...+| ..|..++|
T Consensus 26 ~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~llk 96 (97)
T PF12755_consen 26 DEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA-ELLDRLLK 96 (97)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHHHhc
Confidence 344456667777788899999999999998652 223567888888888777776654444 66766665
No 57
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=76.27 E-value=6.5 Score=29.24 Aligned_cols=55 Identities=13% Similarity=0.240 Sum_probs=43.5
Q ss_pred HHHHHH-ccCCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q psy9795 122 LILHLM-LTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSL 183 (337)
Q Consensus 122 ~Ll~~L-~~~~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i 183 (337)
.|++.| .+.+..+|...+.+++.+.. |+.++.+.+.++++|+.....+...|+.+
T Consensus 3 ~L~~~l~~~~~~~vr~~a~~~L~~~~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i 58 (88)
T PF13646_consen 3 ALLQLLQNDPDPQVRAEAARALGELGD-------PEAIPALIELLKDEDPMVRRAAARALGRI 58 (88)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHCCTH-------HHHHHHHHHHHTSSSHHHHHHHHHHHHCC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCC-------HhHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 467777 44568899888888873321 47999999999999999999999988865
No 58
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=76.13 E-value=18 Score=27.78 Aligned_cols=52 Identities=10% Similarity=0.109 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHHHHHHhhhCC---CCChHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy9795 131 PEAIQKQLSDATAIIGKSDFP---DKWPSLITDMVAKFGTGDFHIINGVLHTAHS 182 (337)
Q Consensus 131 ~~~Ir~ql~~~i~~Ia~~DfP---~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~ 182 (337)
+..+|..+-+|+..|...-.. ..|+.++..+-.....++...+..|..++..
T Consensus 31 ~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~~ 85 (86)
T PF09324_consen 31 SIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQL 85 (86)
T ss_pred cHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHhh
Confidence 467888888888888875444 5899999999999888888888888887764
No 59
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=75.31 E-value=43 Score=28.86 Aligned_cols=105 Identities=13% Similarity=0.163 Sum_probs=68.4
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHhcccccc-CcccCCCCCCCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHhh
Q psy9795 71 LILTLVERADVDMTIRIAGAVAFKNYVKRN-WPLVEDEPDKIHASDREAIKGLILHLMLTS-PEAIQKQLSDATAIIGKS 148 (337)
Q Consensus 71 ~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~-W~~~~~~~~~i~~e~K~~IK~~Ll~~L~~~-~~~Ir~ql~~~i~~Ia~~ 148 (337)
-+...+.++ +...|..|...+|-.+... |. .+-+.-...++ .++..|.+. +..+....+.++..|...
T Consensus 29 ri~~LL~s~--~~~~rw~G~~Ll~~~~~~~~~e-------~l~~~~~~W~~-~Ll~~L~~~~~~~~~~~ai~~L~~l~~~ 98 (165)
T PF08167_consen 29 RINSLLQSK--SAYSRWAGLCLLKVTVEQCSWE-------ILLSHGSQWLR-ALLSILEKPDPPSVLEAAIITLTRLFDL 98 (165)
T ss_pred HHHHHhCCC--ChhhHHHHHHHHHHHHHHhhHH-------HHHHHHHHHHH-HHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 355555554 5788999999999999886 86 45445555555 477777774 467888888889888864
Q ss_pred hCCCCChHHHHHH------------HHhhCCCCHHHHHHHHHHHHHHHhhhhh
Q psy9795 149 DFPDKWPSLITDM------------VAKFGTGDFHIINGVLHTAHSLFKRYRH 189 (337)
Q Consensus 149 DfP~~WPeLl~~L------------~~~l~s~d~~~~~~aL~~L~~i~k~yr~ 189 (337)
- .+||+|..++ ++.++. ......+|.+|..+.+.|-.
T Consensus 99 ~--~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~pt 147 (165)
T PF08167_consen 99 I--RGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPT 147 (165)
T ss_pred h--cCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCc
Confidence 3 4566654443 333322 23456677777777776644
No 60
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=73.79 E-value=1e+02 Score=30.78 Aligned_cols=166 Identities=10% Similarity=0.096 Sum_probs=91.1
Q ss_pred hheeeCCCchhHhhhccchhh-------------H-HHHHHhhcccCCCCChhhhHHHHHHHHHHH-hCCChHHHHHH--
Q psy9795 12 KFIVVDPTNQCLEDMCDRNGE-------------F-FCSTQGVPNHDKNIQLESRSPTENFLESVE-TNQNYPLLILT-- 74 (337)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~-------------~-~~~l~~tL~~~~spD~~~Rk~AE~~L~~~~-~~pgf~~~Ll~-- 74 (337)
...+.||.-.||+-+=+.-.. + ...+...+.--.|||+..|......|..+. +.++.-..+..
T Consensus 96 d~~~~e~~WpHL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i 175 (409)
T PF01603_consen 96 DEPFLEPSWPHLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSI 175 (409)
T ss_dssp ------TTHHHHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHH
T ss_pred cccccccccHhHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 345677777777654221110 0 123333455567899999999999998844 45554333322
Q ss_pred ------HHHhCCCChHHHHHHHH-HHhccccccCcccCCCCCCCCHHHHHHHHHHHHHHHccCC-HHHHHHHHHHHHHHH
Q psy9795 75 ------LVERADVDMTIRIAGAV-AFKNYVKRNWPLVEDEPDKIHASDREAIKGLILHLMLTSP-EAIQKQLSDATAIIG 146 (337)
Q Consensus 75 ------i~~~~~~~~~iRq~AaI-~LKN~V~~~W~~~~~~~~~i~~e~K~~IK~~Ll~~L~~~~-~~Ir~ql~~~i~~Ia 146 (337)
.+-+.....+| .-.. .+...+ +.+. .++.++.+..+++.|+.+..... .....+++.|+....
T Consensus 176 ~~~~~~fi~e~~~~~gI--~elLeil~sii-~gf~------~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~ 246 (409)
T PF01603_consen 176 NNIFYRFIYETERHNGI--AELLEILGSII-NGFA------VPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFL 246 (409)
T ss_dssp HHHHHHHHHTTS--STH--HHHHHHHHHHH-TT--------SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcccccCH--HHHHHHHHHHH-hccC------CCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 22222111111 1111 122222 2222 37889999999998888887643 456889999999999
Q ss_pred hhhCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhh
Q psy9795 147 KSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRY 187 (337)
Q Consensus 147 ~~DfP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~y 187 (337)
..| |.-=...+..++...-..|...-..-|.-+..+++..
T Consensus 247 ~kd-p~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~ 286 (409)
T PF01603_consen 247 EKD-PSLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVL 286 (409)
T ss_dssp HH--GGGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT-
T ss_pred HhC-chhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhc
Confidence 888 4444456666666666667766667777777777754
No 61
>KOG1059|consensus
Probab=72.99 E-value=1.1e+02 Score=32.84 Aligned_cols=76 Identities=7% Similarity=0.075 Sum_probs=53.5
Q ss_pred ChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhhCCCCChHHHHHH
Q psy9795 82 DMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDM 161 (337)
Q Consensus 82 ~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L 161 (337)
-+.+|.=|...+=+..-+ .|+.-|..+. .+.+-|-++++.|.+....+|..+|+.+ |..+=.|-|.+
T Consensus 157 kpYvRKkAIl~lykvFLk-----------YPeAlr~~Fp-rL~EkLeDpDp~V~SAAV~VICELArKn-PknyL~LAP~f 223 (877)
T KOG1059|consen 157 KPYVRKKAILLLYKVFLK-----------YPEALRPCFP-RLVEKLEDPDPSVVSAAVSVICELARKN-PQNYLQLAPLF 223 (877)
T ss_pred chHHHHHHHHHHHHHHHh-----------hhHhHhhhHH-HHHHhccCCCchHHHHHHHHHHHHHhhC-CcccccccHHH
Confidence 356666665443333222 3444444443 4666777788999999999999999998 99998899999
Q ss_pred HHhhCCCCH
Q psy9795 162 VAKFGTGDF 170 (337)
Q Consensus 162 ~~~l~s~d~ 170 (337)
...+.+++-
T Consensus 224 fkllttSsN 232 (877)
T KOG1059|consen 224 YKLLVTSSN 232 (877)
T ss_pred HHHHhccCC
Confidence 998876533
No 62
>KOG1059|consensus
Probab=71.66 E-value=46 Score=35.61 Aligned_cols=114 Identities=14% Similarity=0.194 Sum_probs=79.3
Q ss_pred CCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhhhhh
Q psy9795 111 IHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRYRHE 190 (337)
Q Consensus 111 i~~e~K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~yr~~ 190 (337)
++++--.-+-.-++..|.++-+.+|+....++..+.-. ||+.--.-+|.+++.+..+|+..+.+|..++=++.++
T Consensus 137 vTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLk-YPeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArK---- 211 (877)
T KOG1059|consen 137 VTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLK-YPEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARK---- 211 (877)
T ss_pred cCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHh-hhHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhh----
Confidence 44444445566778888888889999888888888754 6777767789999999999999999998888888775
Q ss_pred hhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHhhhccccC
Q psy9795 191 FKSQKLWTEIKFVLDNFAKPFTELFKATINLVGEHKDNPTALKVIYNSLVVSCKIFYSLNFQD 253 (337)
Q Consensus 191 ~~s~~l~~el~~il~~~~~~L~~lf~~l~~~~~~~~~~~~~~~~~~e~l~lilKif~~~~~~~ 253 (337)
.++ .+. ++.|.++.++.+..+| + ||..++|+|-.++..+
T Consensus 212 --nPk----------nyL----~LAP~ffkllttSsNN------W--mLIKiiKLF~aLtplE 250 (877)
T KOG1059|consen 212 --NPQ----------NYL----QLAPLFYKLLVTSSNN------W--VLIKLLKLFAALTPLE 250 (877)
T ss_pred --CCc----------ccc----cccHHHHHHHhccCCC------e--ehHHHHHHHhhccccC
Confidence 332 122 2333333433333333 2 4677899999998775
No 63
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=71.59 E-value=39 Score=32.13 Aligned_cols=168 Identities=11% Similarity=0.087 Sum_probs=83.9
Q ss_pred CChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHH
Q psy9795 66 QNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIKGLILHLMLTSPEAIQKQLSDATAII 145 (337)
Q Consensus 66 pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~I 145 (337)
++|...++.++.....+..+.+...+.+=..+...=...+- .......+....=..++..+.+.+..|+.+.+.+++.+
T Consensus 54 ~~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~-~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~L 132 (312)
T PF03224_consen 54 DQYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVEL-FLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSL 132 (312)
T ss_dssp --------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHH-HHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHH-HHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 35777777777665346788888888877766543210000 00011111111334566666667889999999999999
Q ss_pred HhhhCCCCCh---HHHHHHHHhhCC----CCHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhHHHHHHHHHH
Q psy9795 146 GKSDFPDKWP---SLITDMVAKFGT----GDFHIINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFTELFKAT 218 (337)
Q Consensus 146 a~~DfP~~WP---eLl~~L~~~l~s----~d~~~~~~aL~~L~~i~k~yr~~~~s~~l~~el~~il~~~~~~L~~lf~~l 218 (337)
+.++-+..=. +.++.+++.+.+ ++.+.+..|+.+|..+++.=+|+ ..+-+ ....+++..++.
T Consensus 133 l~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R----~~f~~-----~~~v~~l~~iL~-- 201 (312)
T PF03224_consen 133 LSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYR----QVFWK-----SNGVSPLFDILR-- 201 (312)
T ss_dssp HTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHH----HHHHT-----HHHHHHHHHHHH--
T ss_pred HHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhH----HHHHh-----cCcHHHHHHHHH--
Confidence 9887554444 677888877765 35556799999999999763332 11000 222222222221
Q ss_pred HHHhcccCCChhHHHHHHHHHHHHHHHhhhcccc
Q psy9795 219 INLVGEHKDNPTALKVIYNSLVVSCKIFYSLNFQ 252 (337)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~e~l~lilKif~~~~~~ 252 (337)
.... ..+ ..-.+++|-++-++|-+++.
T Consensus 202 -~~~~--~~~----~~~~Ql~Y~~ll~lWlLSF~ 228 (312)
T PF03224_consen 202 -KQAT--NSN----SSGIQLQYQALLCLWLLSFE 228 (312)
T ss_dssp ----------------HHHHHHHHHHHHHHHTTS
T ss_pred -hhcc--cCC----CCchhHHHHHHHHHHHHhcC
Confidence 1000 011 22567788999999988765
No 64
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=70.92 E-value=3 Score=28.63 Aligned_cols=51 Identities=10% Similarity=0.105 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHhhhCC---CCChHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q psy9795 133 AIQKQLSDATAIIGKSDFP---DKWPSLITDMVAKFGTGDFHIINGVLHTAHSL 183 (337)
Q Consensus 133 ~Ir~ql~~~i~~Ia~~DfP---~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i 183 (337)
.+|...+.+|+.++....+ ..=|++++.|..++++++......+..+|..|
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4666667777665532211 24578899999999888777778888887654
No 65
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=70.60 E-value=2.6e+02 Score=34.10 Aligned_cols=135 Identities=10% Similarity=0.073 Sum_probs=91.6
Q ss_pred HHHhhcccCCCCChhhhHHHHHHHHHHHh-C---------CChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccC
Q psy9795 36 STQGVPNHDKNIQLESRSPTENFLESVET-N---------QNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVE 105 (337)
Q Consensus 36 ~l~~tL~~~~spD~~~Rk~AE~~L~~~~~-~---------pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~ 105 (337)
.+..+|. +++..+++.|=.-|..+-. . .|-+.-|+.++.+. +..+|.-||..|=|.....+
T Consensus 613 ~Lv~LL~---sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~--~~~v~keAA~AL~nL~~~~~---- 683 (2102)
T PLN03200 613 TLIQLLS---SSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNN--TEAVATQSARALAALSRSIK---- 683 (2102)
T ss_pred HHHHHHc---CCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcC--ChHHHHHHHHHHHHHHhCCC----
Confidence 3444454 3355777777766655432 2 24466677777764 46788888888877765322
Q ss_pred CCCCCCCHHHHH-HHHHH----HHHHHccCCHHHHHHHHHHHHHHHhhh-----CCCCChHHHHHHHHhhCCCCHHHHHH
Q psy9795 106 DEPDKIHASDRE-AIKGL----ILHLMLTSPEAIQKQLSDATAIIGKSD-----FPDKWPSLITDMVAKFGTGDFHIING 175 (337)
Q Consensus 106 ~~~~~i~~e~K~-~IK~~----Ll~~L~~~~~~Ir~ql~~~i~~Ia~~D-----fP~~WPeLl~~L~~~l~s~d~~~~~~ 175 (337)
++.|. .++.. |++.|...+..++.....+++.|++.. +.. -+.++.|+..+++++....+.
T Consensus 684 -------~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~--~~~I~~Lv~lLr~G~~~~k~~ 754 (2102)
T PLN03200 684 -------ENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALA--EDIILPLTRVLREGTLEGKRN 754 (2102)
T ss_pred -------HHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHh--cCcHHHHHHHHHhCChHHHHH
Confidence 22222 23333 555555566789999999999998642 222 246899999999999999999
Q ss_pred HHHHHHHHHhhhh
Q psy9795 176 VLHTAHSLFKRYR 188 (337)
Q Consensus 176 aL~~L~~i~k~yr 188 (337)
|-.+|..+|+.+.
T Consensus 755 Aa~AL~~L~~~~~ 767 (2102)
T PLN03200 755 AARALAQLLKHFP 767 (2102)
T ss_pred HHHHHHHHHhCCC
Confidence 9999999999863
No 66
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=69.84 E-value=72 Score=27.45 Aligned_cols=102 Identities=13% Similarity=0.194 Sum_probs=63.9
Q ss_pred CChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHhcccCCChhHH
Q psy9795 153 KWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFTELFKATINLVGEHKDNPTAL 232 (337)
Q Consensus 153 ~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~yr~~~~s~~l~~el~~il~~~~~~L~~lf~~l~~~~~~~~~~~~~~ 232 (337)
.++.+...+.++++++++..+..|+..++.+++.-.| +. +..-.. ..+..+++++++. ++..
T Consensus 22 ~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~-----e~-------l~~~~~---~W~~~Ll~~L~~~--~~~~- 83 (165)
T PF08167_consen 22 ALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW-----EI-------LLSHGS---QWLRALLSILEKP--DPPS- 83 (165)
T ss_pred HHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH-----HH-------HHHHHH---HHHHHHHHHHcCC--CCHH-
Confidence 4566777788888888888888999999999997433 11 111111 3445556665442 2221
Q ss_pred HHHHHHHHHHHHHhhhccccCChHHH----HHhHHHHHHHHHHhhcc
Q psy9795 233 KVIYNSLVVSCKIFYSLNFQDLPEYF----EDNMVVWMPALHNLLVT 275 (337)
Q Consensus 233 ~~~~e~l~lilKif~~~~~~~lp~~~----e~~l~~W~~~f~~iL~~ 275 (337)
.....+..+-+||..... .|+.- .++++.+.+.+..+++.
T Consensus 84 -~~~~ai~~L~~l~~~~~~--~p~l~Rei~tp~l~~~i~~ll~l~~~ 127 (165)
T PF08167_consen 84 -VLEAAIITLTRLFDLIRG--KPTLTREIATPNLPKFIQSLLQLLQD 127 (165)
T ss_pred -HHHHHHHHHHHHHHHhcC--CCchHHHHhhccHHHHHHHHHHHHhc
Confidence 122344556667765533 34433 47899999999998885
No 67
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=69.76 E-value=62 Score=30.41 Aligned_cols=53 Identities=15% Similarity=0.182 Sum_probs=41.2
Q ss_pred HHHHHHHH-HHHhhhCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhhh
Q psy9795 136 KQLSDATA-IIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRYR 188 (337)
Q Consensus 136 ~ql~~~i~-~Ia~~DfP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~yr 188 (337)
..++.++. ..-+.+.-+.||-++|-++..+...+......|+.+|+.++++..
T Consensus 98 ~~l~w~v~~~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~ 151 (282)
T PF10521_consen 98 HVLSWIVLSQLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVP 151 (282)
T ss_pred HHHHHHHHhcCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCC
Confidence 45566666 222223336899999999999999899999999999999999763
No 68
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=68.64 E-value=1.8e+02 Score=31.57 Aligned_cols=156 Identities=10% Similarity=0.100 Sum_probs=89.7
Q ss_pred eCCCchhHhhhccchhhHHHHHHhhcccCCCCChhhhHHHHHHH-HHHHhC-----CChHHHHHHHHHhC-CCC------
Q psy9795 16 VDPTNQCLEDMCDRNGEFFCSTQGVPNHDKNIQLESRSPTENFL-ESVETN-----QNYPLLILTLVERA-DVD------ 82 (337)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~l~~tL~~~~spD~~~Rk~AE~~L-~~~~~~-----pgf~~~Ll~i~~~~-~~~------ 82 (337)
.-++.+-.|+.-++..+|.+.=-..-..-.|||.+.- ..+ .-..++ .|.+..++.|+... ..+
T Consensus 355 lc~see~eElfEnDp~eyirry~df~d~g~spdlaal----~fl~~~~sKrke~TfqgiLsf~~sil~qsaa~psn~dna 430 (970)
T COG5656 355 LCLSEEEEELFENDPDEYIRRYYDFFDNGLSPDLAAL----FFLIISKSKRKEETFQGILSFLLSILGQSAATPSNIDNA 430 (970)
T ss_pred cCCChhhHHHHhcCHHHHHHHhcchhcCCCChhHHHH----HHHHHHhcccchhhhhhHHHHHHHHHhcccCCCCccccH
Confidence 3456666666666666666655444555566664321 111 112222 24567777777321 111
Q ss_pred ----hHHHHHHHHHHhccccccCcccCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhhCCCC--ChH
Q psy9795 83 ----MTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDK--WPS 156 (337)
Q Consensus 83 ----~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~--WPe 156 (337)
-..|.+|+| +++|.+.= +....-...|-.+++..+.+....++++.|+.++.+ ..||++. =-+
T Consensus 431 rq~egalr~lasi--~s~itk~s--------p~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~-eeDfkd~~ill~ 499 (970)
T COG5656 431 RQAEGALRLLASI--KSFITKMS--------PAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTI-EEDFKDNGILLE 499 (970)
T ss_pred HHHhhHHHHHHHH--HHHhccCc--------hHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHH-HHhcccchHHHH
Confidence 234555554 34444421 233333455666667777666678999999999999 9999853 346
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHHHhh
Q psy9795 157 LITDMVAKFGTGDFHIINGVLHTAHSLFKR 186 (337)
Q Consensus 157 Ll~~L~~~l~s~d~~~~~~aL~~L~~i~k~ 186 (337)
..+...+++++++.....-|-.++..+...
T Consensus 500 aye~t~ncl~nn~lpv~ieAalAlq~fi~~ 529 (970)
T COG5656 500 AYENTHNCLKNNHLPVMIEAALALQFFIFN 529 (970)
T ss_pred HHHHHHHHHhcCCcchhhhHHHHHHHHHhc
Confidence 777778888887554433344445555544
No 69
>KOG1062|consensus
Probab=68.57 E-value=96 Score=33.59 Aligned_cols=76 Identities=7% Similarity=0.151 Sum_probs=60.0
Q ss_pred CCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhhh
Q psy9795 110 KIHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRYR 188 (337)
Q Consensus 110 ~i~~e~K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~yr 188 (337)
+.+++.-++=|..|+++|-+++..||+..-+..-.|... .+--.++.+++.++.+.|.+..-..-.-+-++.++|.
T Consensus 342 ~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~---~Nv~~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfa 417 (866)
T KOG1062|consen 342 QQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNE---SNVRVMVKELLEFLESSDEDFKADIASKIAELAEKFA 417 (866)
T ss_pred cCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcc---ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcC
Confidence 345666677889999999999999999888888888876 4677899999999988877665555566667777774
No 70
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=67.54 E-value=17 Score=22.01 Aligned_cols=28 Identities=11% Similarity=0.313 Sum_probs=23.0
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHhh
Q psy9795 121 GLILHLMLTSPEAIQKQLSDATAIIGKS 148 (337)
Q Consensus 121 ~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~ 148 (337)
..+++.+.+++..||...+.++..|+++
T Consensus 3 p~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 3 PILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 3567788888899999999999999874
No 71
>KOG2956|consensus
Probab=63.25 E-value=1.8e+02 Score=29.70 Aligned_cols=157 Identities=13% Similarity=0.133 Sum_probs=95.1
Q ss_pred hHHHHHHhhcccC-CCCChhhhHHHHHHHHHHHhCCC-------hHH---HHHHHHHhCCCChHHHHHHHHHHhcccccc
Q psy9795 32 EFFCSTQGVPNHD-KNIQLESRSPTENFLESVETNQN-------YPL---LILTLVERADVDMTIRIAGAVAFKNYVKRN 100 (337)
Q Consensus 32 ~~~~~l~~tL~~~-~spD~~~Rk~AE~~L~~~~~~pg-------f~~---~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~ 100 (337)
+--+.++..|.+. .+-..+.|+.|=.+|-.+-...+ |.. .+++++.+. -+..+|-+|.=.++..++..
T Consensus 283 ~~~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~-~~~~~k~laLrvL~~ml~~Q 361 (516)
T KOG2956|consen 283 DQSALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDS-EDEIIKKLALRVLREMLTNQ 361 (516)
T ss_pred chhHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccc-hhhHHHHHHHHHHHHHHHhc
Confidence 3334444444443 22355788888888877665442 333 445555553 47889999988888887764
Q ss_pred CcccCCCCCCCCHHHHHHHHHHHHHHHccCCHHH-HHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCCCHHHHHHHHHH
Q psy9795 101 WPLVEDEPDKIHASDREAIKGLILHLMLTSPEAI-QKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHT 179 (337)
Q Consensus 101 W~~~~~~~~~i~~e~K~~IK~~Ll~~L~~~~~~I-r~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~~~~~~aL~~ 179 (337)
=. .+ .+.-+..-..++++-.++.+.+ +..--.|...++.++ |.. -+..+...+.+.|......++.+
T Consensus 362 ~~-------~l-~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~-P~~---~I~~i~~~Ilt~D~~~~~~~iKm 429 (516)
T KOG2956|consen 362 PA-------RL-FDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHL-PLQ---CIVNISPLILTADEPRAVAVIKM 429 (516)
T ss_pred hH-------hh-hchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhC-chh---HHHHHhhHHhcCcchHHHHHHHH
Confidence 32 12 1222444566778877776554 544455566666665 532 35555666666777777788889
Q ss_pred HHHHHhhhhhhhhhhhhHHHHHHHHHHhhH
Q psy9795 180 AHSLFKRYRHEFKSQKLWTEIKFVLDNFAK 209 (337)
Q Consensus 180 L~~i~k~yr~~~~s~~l~~el~~il~~~~~ 209 (337)
+..+|++..- .++..+++.+.|
T Consensus 430 ~Tkl~e~l~~--------EeL~~ll~diaP 451 (516)
T KOG2956|consen 430 LTKLFERLSA--------EELLNLLPDIAP 451 (516)
T ss_pred HHHHHhhcCH--------HHHHHhhhhhhh
Confidence 9999997522 245555665555
No 72
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=63.02 E-value=1.3e+02 Score=28.04 Aligned_cols=100 Identities=14% Similarity=0.185 Sum_probs=49.4
Q ss_pred ChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhhCC-CCChHHHHH
Q psy9795 82 DMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFP-DKWPSLITD 160 (337)
Q Consensus 82 ~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP-~~WPeLl~~ 160 (337)
+..+|.-|.-+|-..+.+-=. ..++.++-+.+=+-..+-+. ....+...+.-+.+.+-...++ +.=..++..
T Consensus 12 d~~~R~ka~~~Ls~vL~~lp~------~~L~~~ev~~L~~F~~~rl~-D~~~~~~~l~gl~~L~~~~~~~~~~~~~i~~~ 84 (262)
T PF14500_consen 12 DPIIRAKALELLSEVLERLPP------DFLSRQEVQVLLDFFCSRLD-DHACVQPALKGLLALVKMKNFSPESAVKILRS 84 (262)
T ss_pred CHHHHHHHHHHHHHHHHhCCH------hhccHHHHHHHHHHHHHHhc-cHhhHHHHHHHHHHHHhCcCCChhhHHHHHHH
Confidence 556666665555555444211 13455554443333333332 1234444433333333233333 233455555
Q ss_pred HHHhhCCC--CHHHHHHHHHHHHHHHhhhh
Q psy9795 161 MVAKFGTG--DFHIINGVLHTAHSLFKRYR 188 (337)
Q Consensus 161 L~~~l~s~--d~~~~~~aL~~L~~i~k~yr 188 (337)
+.+..+-+ -...++.++.++..++++|+
T Consensus 85 l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~ 114 (262)
T PF14500_consen 85 LFQNVDVQSLPQSTRYAVYQLLDSLLENHR 114 (262)
T ss_pred HHHhCChhhhhHHHHHHHHHHHHHHHHHhH
Confidence 55543322 33457888899999998874
No 73
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=61.95 E-value=18 Score=24.45 Aligned_cols=35 Identities=20% Similarity=0.223 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhh
Q psy9795 114 SDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKS 148 (337)
Q Consensus 114 e~K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~ 148 (337)
.+.+++|+.+++.|...+...|.++..+|+.|.+.
T Consensus 3 ~~~eYLKNvl~~fl~~~~~~~~~~llpvi~tlL~f 37 (46)
T PF01465_consen 3 INLEYLKNVLLQFLESREPSEREQLLPVIATLLKF 37 (46)
T ss_dssp HHHHHHHHHHHHHHTTSS---HHHHHHHHHHHTT-
T ss_pred hhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHCC
Confidence 46789999999999987778888899999888764
No 74
>PF04336 DUF479: Protein of unknown function, DUF479; InterPro: IPR007431 This entry contains the Escherichia coli gene yajB, now renamed acpH, which encodes an ACP hydrolase. AcpH converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine prosthetic group from ACP []. A mutant E. coli strain having a total deletion of the acpH grows normally, showing that phosphodiesterase activity is not essential for growth, although it is required for turnover of the ACP prosthetic group in vivo. AcpH is found only in Gram-negative organisms suggesting that it plays a role in some aspect of lipid metabolism that is unique to these organisms. The most obvious of which is biosynthesis of lipid A. Because AcpH is a hydrolase, it could possibly be an editing enzyme that intercepts acyl-ACPs that would give an inappropriate lipid A structure if used as acyl donors []. ; GO: 0008770 [acyl-carrier-protein] phosphodiesterase activity, 0006633 fatty acid biosynthetic process
Probab=60.35 E-value=32 Score=27.44 Aligned_cols=71 Identities=8% Similarity=0.295 Sum_probs=37.9
Q ss_pred cccccCcccCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCCCHHHHHH
Q psy9795 96 YVKRNWPLVEDEPDKIHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIING 175 (337)
Q Consensus 96 ~V~~~W~~~~~~~~~i~~e~K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~~~~~~ 175 (337)
++.++|. ..+++.-+..-+.+...|......+-..+...+..+..+||-..+ ....|
T Consensus 4 fLA~~W~-------~~s~~~L~~f~~~~Y~~L~~~~~~lP~~~~~~~~~m~~~dWL~~Y----------------~~~eg 60 (106)
T PF04336_consen 4 FLAKHWS-------QFSDQPLEDFAQRFYQQLEANQPILPPRFQRMLPYMIEHDWLSSY----------------RTLEG 60 (106)
T ss_pred HHHHhHH-------HHCcCCHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHhCHHHHc----------------CCHHH
Confidence 3457786 344444556666666666664333334444455555555543222 23455
Q ss_pred HHHHHHHHHhhhhh
Q psy9795 176 VLHTAHSLFKRYRH 189 (337)
Q Consensus 176 aL~~L~~i~k~yr~ 189 (337)
.-.+|..+.++.+.
T Consensus 61 i~~al~~m~~R~~~ 74 (106)
T PF04336_consen 61 IERALQRMSRRLRR 74 (106)
T ss_pred HHHHHHHHHhccCc
Confidence 55666666666544
No 75
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=60.34 E-value=2.8e+02 Score=33.82 Aligned_cols=114 Identities=11% Similarity=0.116 Sum_probs=78.8
Q ss_pred CCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q psy9795 65 NQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIKGLILHLMLTSPEAIQKQLSDATAI 144 (337)
Q Consensus 65 ~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~ 144 (337)
..|.+..|.+++.+. +..+|.-|+-.+=|+...+=. ....=.....=.-++..|.+.+..+++..+.++..
T Consensus 607 ~~ggL~~Lv~LL~sg--s~~ikk~Aa~iLsnL~a~~~d-------~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~n 677 (2102)
T PLN03200 607 ANDALRTLIQLLSSS--KEETQEKAASVLADIFSSRQD-------LCESLATDEIINPCIKLLTNNTEAVATQSARALAA 677 (2102)
T ss_pred ccccHHHHHHHHcCC--CHHHHHHHHHHHHHHhcCChH-------HHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 357788888888874 578888888777777654311 01000001111234555555667899999999999
Q ss_pred HHhhhCCCCC-----hHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhh
Q psy9795 145 IGKSDFPDKW-----PSLITDMVAKFGTGDFHIINGVLHTAHSLFKRY 187 (337)
Q Consensus 145 Ia~~DfP~~W-----PeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~y 187 (337)
+++.-.+++. -+.++-|++++.++|...+..++.+|..+++.-
T Consensus 678 L~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~ 725 (2102)
T PLN03200 678 LSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDP 725 (2102)
T ss_pred HHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCc
Confidence 9974433332 246888999999999999999999999999974
No 76
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=59.72 E-value=23 Score=22.69 Aligned_cols=28 Identities=14% Similarity=0.062 Sum_probs=18.6
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q psy9795 157 LITDMVAKFGTGDFHIINGVLHTAHSLF 184 (337)
Q Consensus 157 Ll~~L~~~l~s~d~~~~~~aL~~L~~i~ 184 (337)
.+|.|++++.++|...+..++.+|+.++
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 5666677776666666666666666654
No 77
>KOG1062|consensus
Probab=59.50 E-value=2.7e+02 Score=30.40 Aligned_cols=137 Identities=13% Similarity=0.071 Sum_probs=81.9
Q ss_pred ChhhhHHHHHHHH--HHHhCC---ChHHHHHHHHHhCCC-ChHHHHHHHHH-----------HhccccccCcccCC---C
Q psy9795 48 QLESRSPTENFLE--SVETNQ---NYPLLILTLVERADV-DMTIRIAGAVA-----------FKNYVKRNWPLVED---E 107 (337)
Q Consensus 48 D~~~Rk~AE~~L~--~~~~~p---gf~~~Ll~i~~~~~~-~~~iRq~AaI~-----------LKN~V~~~W~~~~~---~ 107 (337)
|+.-|+.-=+.|- .+-+.| |+.. ++.++++++. +--+-.+|+.+ +-|.+++.-..... +
T Consensus 47 d~~~r~rniaKLlYi~MLGypahFGqie-clKLias~~f~dKRiGYLaamLlLdE~qdvllLltNslknDL~s~nq~vVg 125 (866)
T KOG1062|consen 47 DPRKRHRNIAKLLYIHMLGYPAHFGQIE-CLKLIASDNFLDKRIGYLAAMLLLDERQDLLLLLTNSLKNDLNSSNQYVVG 125 (866)
T ss_pred CHHHHHHHHHHHHHHHHhCCCccchhhH-HHHHhcCCCchHHHHHHHHHHHHhccchHHHHHHHHHHHhhccCCCeeehH
Confidence 4445555444443 233444 3333 3456565543 34455555544 56777765543321 0
Q ss_pred ------CCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy9795 108 ------PDKIHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAH 181 (337)
Q Consensus 108 ------~~~i~~e~K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~ 181 (337)
....++|--..+-..+-+.+...++.||++.+.|...+.+.+ |+-=.-+++.--+.+.+.+.....+++..+.
T Consensus 126 lAL~alg~i~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~-P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~ 204 (866)
T KOG1062|consen 126 LALCALGNICSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKV-PDLVEHFVIAFRKLLCEKHHGVLIAGLHLIT 204 (866)
T ss_pred HHHHHhhccCCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcC-chHHHHhhHHHHHHHhhcCCceeeeHHHHHH
Confidence 123455444444445555666677899999999999998875 4444445555555666777777888999999
Q ss_pred HHHhh
Q psy9795 182 SLFKR 186 (337)
Q Consensus 182 ~i~k~ 186 (337)
++|+.
T Consensus 205 e~c~~ 209 (866)
T KOG1062|consen 205 ELCKI 209 (866)
T ss_pred HHHhc
Confidence 99997
No 78
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=58.83 E-value=50 Score=29.24 Aligned_cols=131 Identities=15% Similarity=0.189 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHhh-h---CCCCChHHHHHH-----------HHh-hCCCCHHHHHHHHHHHHHHHhhhhhhhhhhhhH
Q psy9795 134 IQKQLSDATAIIGKS-D---FPDKWPSLITDM-----------VAK-FGTGDFHIINGVLHTAHSLFKRYRHEFKSQKLW 197 (337)
Q Consensus 134 Ir~ql~~~i~~Ia~~-D---fP~~WPeLl~~L-----------~~~-l~s~d~~~~~~aL~~L~~i~k~yr~~~~s~~l~ 197 (337)
||.....++..|++. | +-+.|+.|+|+- +.. +.+++...+.+|+.++..+++..+..+.--+.+
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 677777888888887 3 236899999987 111 123455678899999999998864332211100
Q ss_pred H----HHHHHHHHhhHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHhhhccc----cCChHHHHHhHHHHHHHH
Q psy9795 198 T----EIKFVLDNFAKPFTELFKATINLVGEHKDNPTALKVIYNSLVVSCKIFYSLNF----QDLPEYFEDNMVVWMPAL 269 (337)
Q Consensus 198 ~----el~~il~~~~~~L~~lf~~l~~~~~~~~~~~~~~~~~~e~l~lilKif~~~~~----~~lp~~~e~~l~~W~~~f 269 (337)
+ ..-..-.++...+.++-..+...++. +.+.+ ++..++|++-.++. ..+|. +.+...+...
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~-E~~~~-------~l~q~lK~la~Lv~~tPY~rL~~---~ll~~~v~~v 150 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQA-EKSPP-------VLTQLLKCLAVLVQATPYHRLPP---GLLTEVVTQV 150 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhc-ccccH-------HHHHHHHHHHHHHccCChhhcCH---hHHHHHHHHH
Confidence 0 11133444555555566666665532 22222 34566666665553 23333 4555555555
Q ss_pred HHhhcc
Q psy9795 270 HNLLVT 275 (337)
Q Consensus 270 ~~iL~~ 275 (337)
..++..
T Consensus 151 ~~~l~~ 156 (182)
T PF13251_consen 151 RPLLRH 156 (182)
T ss_pred HHHHhc
Confidence 555554
No 79
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=56.62 E-value=55 Score=29.04 Aligned_cols=66 Identities=11% Similarity=0.094 Sum_probs=42.5
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHHHhhhCCC----CChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhh
Q psy9795 122 LILHLMLTSPEAIQKQLSDATAIIGKSDFPD----KWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRY 187 (337)
Q Consensus 122 ~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~----~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~y 187 (337)
..++.|......-+-.....+..+..+..++ -=|.|+.-|-..+++.|......+|.+|..++...
T Consensus 42 if~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~ 111 (183)
T PF10274_consen 42 IFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSS 111 (183)
T ss_pred HHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Confidence 3445555544444444444555555553332 23556666667778889999999999999998863
No 80
>KOG0414|consensus
Probab=56.59 E-value=3.5e+02 Score=30.85 Aligned_cols=201 Identities=17% Similarity=0.197 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhCC--CChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHHHHHHHHHHHHccCC-HHHHHHHHHHHHH
Q psy9795 68 YPLLILTLVERAD--VDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIKGLILHLMLTSP-EAIQKQLSDATAI 144 (337)
Q Consensus 68 f~~~Ll~i~~~~~--~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~~IK~~Ll~~L~~~~-~~Ir~ql~~~i~~ 144 (337)
|.+.+..+..++. .++.++++|.+.|-++. .|+.+--+.==..++..|-.++ +.||..+.-+++.
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM------------~iSa~fces~l~llftimeksp~p~IRsN~VvalgD 987 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLM------------CISAEFCESHLPLLFTIMEKSPSPRIRSNLVVALGD 987 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHh------------hhhHHHHHHHHHHHHHHHhcCCCceeeecchheccc
Q ss_pred HHhhhCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhhhhhhhh--hhhHHHHHHHHHHhhHHHHHHHHHHHHHh
Q psy9795 145 IGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRYRHEFKS--QKLWTEIKFVLDNFAKPFTELFKATINLV 222 (337)
Q Consensus 145 Ia~~DfP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~yr~~~~s--~~l~~el~~il~~~~~~L~~lf~~l~~~~ 222 (337)
.|-. ||.--....+.+...++..++.....|+.+|+.+.=+=.-+.|+ .++..=+..--+.+-..-...|..+....
T Consensus 988 lav~-fpnlie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k~ 1066 (1251)
T KOG0414|consen 988 LAVR-FPNLIEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSSKG 1066 (1251)
T ss_pred hhhh-cccccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhcc
Q ss_pred cccCCChhHHHHHHHHHHHHHHHhhhccccCChHHH---------HHhHHHHHHHHHHhhccCCCCCCccchhhhhhhhc
Q psy9795 223 GEHKDNPTALKVIYNSLVVSCKIFYSLNFQDLPEYF---------EDNMVVWMPALHNLLVTDVPCLRTDSIFVNSFRRF 293 (337)
Q Consensus 223 ~~~~~~~~~~~~~~e~l~lilKif~~~~~~~lp~~~---------e~~l~~W~~~f~~iL~~~~p~l~~d~~~~r~~~~~ 293 (337)
+ .++.-+|+++ ++....-|+++..+|+++ +-...|.+ +||
T Consensus 1067 n-------------------------~iynlLPdil~~Ls~~~l~~~~~~~vm~~li~~ikkd-erf~~~~~-----~ry 1115 (1251)
T KOG0414|consen 1067 N-------------------------TIYNLLPDILSRLSNGNLEEESYKTVMEFLIGLIKKD-ERFSADRI-----ERY 1115 (1251)
T ss_pred c-------------------------chhhhchHHHHhhccCcccchhhHHHHHHHHHHhccc-cccccccc-----chh
Q ss_pred cchhHH-----HhhhHHHHHHHHHH
Q psy9795 294 ISDVET-----RRRAACDFVKILCK 313 (337)
Q Consensus 294 ~~~~~~-----~k~~~~~~~~~~~k 313 (337)
-.+.-+ .|+ .-.+.+-|.+
T Consensus 1116 cl~~l~~~e~~~kk-~~~~f~~~a~ 1139 (1251)
T KOG0414|consen 1116 CLSLLTTTERGSKK-LKDLFTALAK 1139 (1251)
T ss_pred hhcccccchhhhhh-HHHHHHHHHH
No 81
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=55.29 E-value=1e+02 Score=24.60 Aligned_cols=73 Identities=12% Similarity=0.048 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhHHH
Q psy9795 134 IQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTG--DFHIINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPF 211 (337)
Q Consensus 134 Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~--d~~~~~~aL~~L~~i~k~yr~~~~s~~l~~el~~il~~~~~~L 211 (337)
-|.+.-.++..+.+ --.+.=....|++..++++. ..+....++.|-+.+++.... +++.+++++++..+
T Consensus 31 ek~~~l~si~~lI~-~~~~~i~~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L~~--------~~l~~ll~~~~~~l 101 (107)
T PF08064_consen 31 EKKRALRSIEELIK-LGGSHISSARPQIMACLQSALEIPELREEALSCWNCFIKTLDE--------EDLGPLLDQIFAIL 101 (107)
T ss_pred HHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHCCH--------HHHHHHHHHHHHHH
Confidence 34444444555554 22234456778888888763 445677899999999998632 35667777776655
Q ss_pred HHHH
Q psy9795 212 TELF 215 (337)
Q Consensus 212 ~~lf 215 (337)
.+.+
T Consensus 102 ~~~~ 105 (107)
T PF08064_consen 102 LPLW 105 (107)
T ss_pred HHhc
Confidence 4443
No 82
>KOG0166|consensus
Probab=54.89 E-value=1.3e+02 Score=31.18 Aligned_cols=116 Identities=14% Similarity=0.125 Sum_probs=73.3
Q ss_pred CCCChhhhHHHHHHHHHHHh----------CCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHH
Q psy9795 45 KNIQLESRSPTENFLESVET----------NQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHAS 114 (337)
Q Consensus 45 ~spD~~~Rk~AE~~L~~~~~----------~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e 114 (337)
.||+..+|.||=-.|-.+-. ..|.+.-|+.++.........|.+ .=.|-|+.+..=. .-+-+
T Consensus 162 ~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~-tW~LsNlcrgk~P-------~P~~~ 233 (514)
T KOG0166|consen 162 SSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNA-TWTLSNLCRGKNP-------SPPFD 233 (514)
T ss_pred cCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHH-HHHHHHHHcCCCC-------CCcHH
Confidence 47778999999887766543 356677777777765432344444 4455666554321 22334
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhhCCCCCh------HHHHHHHHhhCCCCH
Q psy9795 115 DREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWP------SLITDMVAKFGTGDF 170 (337)
Q Consensus 115 ~K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~WP------eLl~~L~~~l~s~d~ 170 (337)
.-..+=..|...+.+.+..|.+-.|.+++.++.. |..|- +.++.|+.++.+.+.
T Consensus 234 ~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg--~ne~iq~vi~~gvv~~LV~lL~~~~~ 293 (514)
T KOG0166|consen 234 VVAPILPALLRLLHSTDEEVLTDACWALSYLTDG--SNEKIQMVIDAGVVPRLVDLLGHSSP 293 (514)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC--ChHHHHHHHHccchHHHHHHHcCCCc
Confidence 4455556677777778899999999999988743 33332 356777888776543
No 83
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=53.94 E-value=2.7e+02 Score=30.21 Aligned_cols=123 Identities=9% Similarity=0.053 Sum_probs=80.2
Q ss_pred ChhhhHHHHHH-HHHHHhCCChHHHHHHHHHhC-CCChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHHHHHHHHHH
Q psy9795 48 QLESRSPTENF-LESVETNQNYPLLILTLVERA-DVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIKGLILH 125 (337)
Q Consensus 48 D~~~Rk~AE~~-L~~~~~~pgf~~~Ll~i~~~~-~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~~IK~~Ll~ 125 (337)
+...|..|=++ +.++..-..+..++-+++..- ..+..+|-+--.|++++-+. |. ++--..=+.+..
T Consensus 32 n~~~kidAmK~iIa~M~~G~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~-~P-----------~~~lLavNti~k 99 (757)
T COG5096 32 NDYKKIDAMKKIIAQMSLGEDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKL-KP-----------ELALLAVNTIQK 99 (757)
T ss_pred ChHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcc-CH-----------HHHHHHHHHHHh
Confidence 34555555444 456665555655555665421 24677777777777776433 32 222222334555
Q ss_pred HHccCCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHh
Q psy9795 126 LMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFK 185 (337)
Q Consensus 126 ~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k 185 (337)
-+.++++.||. .+|+.+....-++-|+.+++-+.+++.++++-.+..|-.|+..+++
T Consensus 100 Dl~d~N~~iR~---~AlR~ls~l~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ 156 (757)
T COG5096 100 DLQDPNEEIRG---FALRTLSLLRVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYR 156 (757)
T ss_pred hccCCCHHHHH---HHHHHHHhcChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHh
Confidence 56666788884 5566666666667899999999999999988888888888888774
No 84
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=52.84 E-value=2e+02 Score=26.81 Aligned_cols=131 Identities=15% Similarity=0.112 Sum_probs=79.8
Q ss_pred hhcccCCCCChhhhHHHHHHHHHHHh---------CCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCC
Q psy9795 39 GVPNHDKNIQLESRSPTENFLESVET---------NQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPD 109 (337)
Q Consensus 39 ~tL~~~~spD~~~Rk~AE~~L~~~~~---------~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~ 109 (337)
..|+.+ .|+.+++.|--.+-.... .-|-+..+..++.++ +..+|.-|.-.+.|.
T Consensus 19 ~lL~~t--~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p--~~~vr~~AL~aL~Nl------------- 81 (254)
T PF04826_consen 19 CLLEST--EDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDP--NPSVREKALNALNNL------------- 81 (254)
T ss_pred HHHhcC--CChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCC--ChHHHHHHHHHHHhc-------------
Confidence 444433 366677777666554333 235555566666554 678888887778766
Q ss_pred CCCHHHHHHHHHHHHHHHc---cC--CHHHHHHHHHHHHHHHhhh-CCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q psy9795 110 KIHASDREAIKGLILHLML---TS--PEAIQKQLSDATAIIGKSD-FPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSL 183 (337)
Q Consensus 110 ~i~~e~K~~IK~~Ll~~L~---~~--~~~Ir~ql~~~i~~Ia~~D-fP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i 183 (337)
..+.+.+..||..+-+.+. +. +..++..--.++..+.-.+ +-.--..-++.++.++.+++.....-+|.+|..+
T Consensus 82 s~~~en~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nL 161 (254)
T PF04826_consen 82 SVNDENQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNL 161 (254)
T ss_pred CCChhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 2335555667765554443 22 2455544445555554322 2222334678888899999988888999999888
Q ss_pred Hhh
Q psy9795 184 FKR 186 (337)
Q Consensus 184 ~k~ 186 (337)
.++
T Consensus 162 S~n 164 (254)
T PF04826_consen 162 SEN 164 (254)
T ss_pred ccC
Confidence 875
No 85
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=52.80 E-value=1.3e+02 Score=29.95 Aligned_cols=73 Identities=16% Similarity=0.251 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHc----c----CCHHHHHHHHHHHHHHHhhhCC-----CCChHHHHHHHHhhCCCCHHHHHHHHHH
Q psy9795 113 ASDREAIKGLILHLML----T----SPEAIQKQLSDATAIIGKSDFP-----DKWPSLITDMVAKFGTGDFHIINGVLHT 179 (337)
Q Consensus 113 ~e~K~~IK~~Ll~~L~----~----~~~~Ir~ql~~~i~~Ia~~DfP-----~~WPeLl~~L~~~l~s~d~~~~~~aL~~ 179 (337)
...|--.|+.+...+. + ++..+|..+-.+++.|.++ -| .+=|+++|-+++.++.+|.+...++|.+
T Consensus 310 a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~-vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~t 388 (415)
T PF12460_consen 310 ANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKN-VPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLET 388 (415)
T ss_pred chhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhh-CCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 4455555665544433 3 3345788888888888874 35 3678999999999999999999999999
Q ss_pred HHHHHhh
Q psy9795 180 AHSLFKR 186 (337)
Q Consensus 180 L~~i~k~ 186 (337)
|..++++
T Consensus 389 L~~~l~~ 395 (415)
T PF12460_consen 389 LKMILEE 395 (415)
T ss_pred HHHHHHc
Confidence 9999997
No 86
>KOG0213|consensus
Probab=52.04 E-value=1.3e+02 Score=32.60 Aligned_cols=120 Identities=13% Similarity=0.176 Sum_probs=71.6
Q ss_pred HccCCHHHHHHHHHHHHHHHhhhCC---CCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHH
Q psy9795 127 MLTSPEAIQKQLSDATAIIGKSDFP---DKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRYRHEFKSQKLWTEIKFV 203 (337)
Q Consensus 127 L~~~~~~Ir~ql~~~i~~Ia~~DfP---~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~yr~~~~s~~l~~el~~i 203 (337)
+.+....||..-+.+++.+|..-.| +...+.+.-|-.-+++.-....-+-|.+.+.+|-..+.++. ..++
T Consensus 562 l~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkgir~hrgk~laafLkAigyliplmd~eya--~yyT----- 634 (1172)
T KOG0213|consen 562 LKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYA--SYYT----- 634 (1172)
T ss_pred hcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHccChHHHHHHHHHhhccccccHHHH--HHhH-----
Confidence 3345578999999999999999999 56777777777766655444555667777777765432111 0000
Q ss_pred HHHhhHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHhhhccccC--ChHHH-HHhHHHHHHHHH
Q psy9795 204 LDNFAKPFTELFKATINLVGEHKDNPTALKVIYNSLVVSCKIFYSLNFQD--LPEYF-EDNMVVWMPALH 270 (337)
Q Consensus 204 l~~~~~~L~~lf~~l~~~~~~~~~~~~~~~~~~e~l~lilKif~~~~~~~--lp~~~-e~~l~~W~~~f~ 270 (337)
- +++-.+..-.+ ++ =.||-+.++|+|..|+..+ -|+++ .+.++.++..|.
T Consensus 635 ----r----evmlil~rEf~----sP-----DeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw 687 (1172)
T KOG0213|consen 635 ----R----EVMLILIREFG----SP-----DEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFW 687 (1172)
T ss_pred ----H----HHHHHHHHhhC----CC-----hHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhh
Confidence 0 01111111111 11 1246688999999887654 35666 466776666554
No 87
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=51.84 E-value=1.9e+02 Score=29.70 Aligned_cols=85 Identities=9% Similarity=0.092 Sum_probs=65.2
Q ss_pred HHHHHHhhcccCCCCChhhhHHHHHHHHHHHh----CCCh---HHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccC
Q psy9795 33 FFCSTQGVPNHDKNIQLESRSPTENFLESVET----NQNY---PLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVE 105 (337)
Q Consensus 33 ~~~~l~~tL~~~~spD~~~Rk~AE~~L~~~~~----~pgf---~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~ 105 (337)
|.+.+ |..-.||+..+|+..-+-|+.+.+ .|.. +..|++...+++....+|.++.+|++.-+.
T Consensus 24 ~L~pl---Llkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~------- 93 (501)
T PF13001_consen 24 YLPPL---LLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFD------- 93 (501)
T ss_pred HHHHH---HHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhh-------
Confidence 44444 445568899999999998887655 3443 677888888877679999999999977664
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHccCC
Q psy9795 106 DEPDKIHASDREAIKGLILHLMLTSP 131 (337)
Q Consensus 106 ~~~~~i~~e~K~~IK~~Ll~~L~~~~ 131 (337)
.++.++|..+=-.+++.+..-+
T Consensus 94 ----Rl~~~e~~~llP~ll~~is~~~ 115 (501)
T PF13001_consen 94 ----RLDDEERRELLPSLLKGISKKP 115 (501)
T ss_pred ----cCCHHHHHHHHHHHHHhhccCc
Confidence 4788998888888888887533
No 88
>smart00755 Grip golgin-97, RanBP2alpha,Imh1p and p230/golgin-245.
Probab=51.53 E-value=29 Score=23.58 Aligned_cols=34 Identities=12% Similarity=0.217 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhh
Q psy9795 115 DREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSD 149 (337)
Q Consensus 115 ~K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~D 149 (337)
+.+++|+-+++.|...+.. |.++..+|+.+.+-+
T Consensus 3 n~eYLKNVll~fl~~~e~~-r~~ll~vi~tlL~fs 36 (46)
T smart00755 3 NFEYLKNVLLQFLTLRESE-RETLLKVISTVLQLS 36 (46)
T ss_pred cHHHHHHHHHHHhccCcch-HHHHHHHHHHHhCCC
Confidence 4578999999999886655 888888888887643
No 89
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=48.12 E-value=64 Score=25.67 Aligned_cols=39 Identities=8% Similarity=0.033 Sum_probs=35.6
Q ss_pred hCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhh
Q psy9795 149 DFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRY 187 (337)
Q Consensus 149 DfP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~y 187 (337)
+.+....+.+..|...+++.++..++-+|.+|..+++.-
T Consensus 30 ~~~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~ 68 (115)
T cd00197 30 ETNVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNC 68 (115)
T ss_pred CCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHc
Confidence 347788999999999999999999999999999999985
No 90
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=47.76 E-value=2.1e+02 Score=28.65 Aligned_cols=109 Identities=7% Similarity=-0.065 Sum_probs=67.5
Q ss_pred CCChhhhHHHHHHHHHHHhCCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHHHHHHHHHH
Q psy9795 46 NIQLESRSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIKGLILH 125 (337)
Q Consensus 46 spD~~~Rk~AE~~L~~~~~~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~~IK~~Ll~ 125 (337)
+++.++|..+=+.|..+. .|+....|+..+.+. ++.+|-.+.-.+.++ .-. . -..++.
T Consensus 97 d~~~~vr~aaa~ALg~i~-~~~a~~~L~~~L~~~--~p~vR~aal~al~~r---~~~-------~---------~~~L~~ 154 (410)
T TIGR02270 97 AGPEGLCAGIQAALGWLG-GRQAEPWLEPLLAAS--EPPGRAIGLAALGAH---RHD-------P---------GPALEA 154 (410)
T ss_pred CCCHHHHHHHHHHHhcCC-chHHHHHHHHHhcCC--ChHHHHHHHHHHHhh---ccC-------h---------HHHHHH
Confidence 455567777777775543 355666666666543 456665444333321 000 0 124555
Q ss_pred HHccCCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q psy9795 126 LMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSL 183 (337)
Q Consensus 126 ~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i 183 (337)
.|.+.+..||..-..++..|. +++.++.|...+.+.|.....+++..+..+
T Consensus 155 ~L~d~d~~Vra~A~raLG~l~-------~~~a~~~L~~al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 155 ALTHEDALVRAAALRALGELP-------RRLSESTLRLYLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred HhcCCCHHHHHHHHHHHHhhc-------cccchHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 666677888887777777664 456778888888888888888887777554
No 91
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=47.60 E-value=1.8e+02 Score=24.77 Aligned_cols=34 Identities=24% Similarity=0.478 Sum_probs=26.8
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhhhh
Q psy9795 156 SLITDMVAKFGTGDFHIINGVLHTAHSLFKRYRH 189 (337)
Q Consensus 156 eLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~yr~ 189 (337)
.+.+.+.+.+.+++......+++++..++.+||.
T Consensus 73 ~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~ 106 (168)
T PF12783_consen 73 DLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRS 106 (168)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666777888999999999999876
No 92
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=47.60 E-value=83 Score=22.64 Aligned_cols=43 Identities=16% Similarity=0.225 Sum_probs=27.4
Q ss_pred HHHHHhhhCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhh
Q psy9795 142 TAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRY 187 (337)
Q Consensus 142 i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~y 187 (337)
+..+...+ |+-|..|+..+.+ .+.+...+..|...|+..++++
T Consensus 5 L~~~~~~~-p~~~~~l~~il~~--~~~~~~~R~~A~i~LKn~I~~~ 47 (77)
T PF03810_consen 5 LKQFQKQN-PGFWQYLLQILSS--NSQDPEVRQLAAILLKNLIKKN 47 (77)
T ss_dssp HHHHHHSC-TCHHHHHHHHHHC--TTSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHH-hhHHHHHHHHHHc--cCCCHHHHHHHHHHHHHHHHHc
Confidence 34445555 6655555554443 3347777888888898888876
No 93
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=46.66 E-value=76 Score=29.72 Aligned_cols=52 Identities=17% Similarity=0.221 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhh
Q psy9795 136 KQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRY 187 (337)
Q Consensus 136 ~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~y 187 (337)
.=+..+++.|..+=||+.+.+.+..+.+++.++-.......|.+|+.++..-
T Consensus 168 dfl~~v~~~l~~~f~P~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~ 219 (262)
T PF14225_consen 168 DFLSQVVSYLREAFFPDHEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHV 219 (262)
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccc
Confidence 3445566667777779999999999999998887777888999999999874
No 94
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=46.12 E-value=59 Score=25.40 Aligned_cols=61 Identities=11% Similarity=0.158 Sum_probs=32.5
Q ss_pred hccchhhHHH---HHHhhcccCCCCChhhhHHHHHHHHHHHhC---CC-----hHHHHHHHHHhCCCChHHHH
Q psy9795 26 MCDRNGEFFC---STQGVPNHDKNIQLESRSPTENFLESVETN---QN-----YPLLILTLVERADVDMTIRI 87 (337)
Q Consensus 26 ~~~~~~~~~~---~l~~tL~~~~spD~~~Rk~AE~~L~~~~~~---pg-----f~~~Ll~i~~~~~~~~~iRq 87 (337)
|+|....|.+ +|.... ++.+--.++|+.|++..+.+.+. |+ .+..|=+|..+++.|.+.|.
T Consensus 8 ~~d~~e~i~q~~~lL~~Ii-~DttVPRNIRraA~~a~e~L~~e~e~p~vRaAtaIsiLeeisnDPNmP~h~RT 79 (93)
T COG1698 8 MNDSEEKINQVMQLLDEII-QDTTVPRNIRRAAEEAKEALNNEGESPAVRAATAISILEEISNDPNMPLHART 79 (93)
T ss_pred hhhhHHHHHHHHHHHHHHH-ccccccHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 4443443443 444433 34444458999999988877652 21 12333344445555555554
No 95
>KOG1078|consensus
Probab=44.03 E-value=3.5e+02 Score=29.52 Aligned_cols=72 Identities=13% Similarity=0.230 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCC-CCHHHHHHHHHHHHHHHh
Q psy9795 113 ASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGT-GDFHIINGVLHTAHSLFK 185 (337)
Q Consensus 113 ~e~K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s-~d~~~~~~aL~~L~~i~k 185 (337)
++.+..+.+.+-..+.+-+...+....+++..++ .-||.+|..+++.|...+.+ +-.........++-.+.+
T Consensus 349 e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc-~~fp~k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie 421 (865)
T KOG1078|consen 349 ESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLC-LKFPRKHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIE 421 (865)
T ss_pred hhHHHHHHHHHHHHHHhccccceEEeHHHHHHHH-hhccHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHH
Confidence 4444555555555554422222222333333333 34899999999999998865 344555555666666665
No 96
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=43.77 E-value=42 Score=20.72 Aligned_cols=28 Identities=11% Similarity=0.129 Sum_probs=16.2
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q psy9795 157 LITDMVAKFGTGDFHIINGVLHTAHSLF 184 (337)
Q Consensus 157 Ll~~L~~~l~s~d~~~~~~aL~~L~~i~ 184 (337)
.++.|++++++++...+..++.+|+.++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 4555556666556666666666665543
No 97
>KOG1851|consensus
Probab=43.12 E-value=4.2e+02 Score=31.22 Aligned_cols=117 Identities=9% Similarity=0.016 Sum_probs=83.3
Q ss_pred CCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q psy9795 65 NQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIKGLILHLMLTSPEAIQKQLSDATAI 144 (337)
Q Consensus 65 ~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~ 144 (337)
+|.|+..+.+...+ +..-++|.+..-+++-.|-.+=. ...+..|..|+..+...+.+.+..+|.--+.+++.
T Consensus 1524 ~~e~l~~l~~~~~~-~~tw~vr~avl~fl~~~vy~n~F-------v~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsg 1595 (1710)
T KOG1851|consen 1524 QPEFLRDLKMLTAD-SSTWRVRSAVLKFLQTVVYSNIF-------VSQELRRDDIRKLLESLLNDDQIEVREEAAKCLSG 1595 (1710)
T ss_pred HHHHHHHHHHHhcc-cchHHHHHHHHHHHHHHHHHHhh-------cccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHH
Confidence 46677777664334 44689999988888877755432 34678889999988888888777899999999999
Q ss_pred HHhhhCCCCChHHHHHHHHhhCC--CCHHHHHHHHHHHHHHHhhhhh
Q psy9795 145 IGKSDFPDKWPSLITDMVAKFGT--GDFHIINGVLHTAHSLFKRYRH 189 (337)
Q Consensus 145 Ia~~DfP~~WPeLl~~L~~~l~s--~d~~~~~~aL~~L~~i~k~yr~ 189 (337)
+.+.-|-.-=++--.......++ .+....|||...|+.++=.+-|
T Consensus 1596 l~~~s~~~~~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy 1642 (1710)
T KOG1851|consen 1596 LLQGSKFQFVSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPY 1642 (1710)
T ss_pred HHhccccccchHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccc
Confidence 99865533222222233333333 3667789999999999988766
No 98
>KOG1837|consensus
Probab=42.48 E-value=1.3e+02 Score=35.15 Aligned_cols=54 Identities=15% Similarity=0.113 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhh
Q psy9795 133 AIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRY 187 (337)
Q Consensus 133 ~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~y 187 (337)
.+-..+..+++.++..| ++.|+.|..+++....+++.+..+.|+..+..+.++.
T Consensus 1519 ~v~~~li~~i~~~~~a~-~~d~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~l 1572 (1621)
T KOG1837|consen 1519 IVSKLLIAEIASDSVAD-KDDLKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKL 1572 (1621)
T ss_pred HHHHHHHHHHHhhccCC-hhhhHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh
Confidence 35566677777777766 3349999999999999999999999999999988864
No 99
>PF14961 BROMI: Broad-minded protein
Probab=42.13 E-value=2.8e+02 Score=31.77 Aligned_cols=66 Identities=17% Similarity=0.259 Sum_probs=49.9
Q ss_pred HHHHHHHcc-CCHHHHHHHHHHHHHHHhhhCC--CCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhh
Q psy9795 121 GLILHLMLT-SPEAIQKQLSDATAIIGKSDFP--DKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKR 186 (337)
Q Consensus 121 ~~Ll~~L~~-~~~~Ir~ql~~~i~~Ia~~DfP--~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~ 186 (337)
+.|++-|.. .|..||....+.+..+--.|-. +.||.|-..|...+..+|....+.+|+.....+..
T Consensus 164 q~i~d~ld~~~P~evR~eAlq~Lc~~p~SDVls~E~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak~fss 232 (1296)
T PF14961_consen 164 QLIADKLDPGQPKEVRLEALQILCSAPPSDVLSCESWSVLRENLTDALSDPDPEISDASLRFHAKMFSS 232 (1296)
T ss_pred HHHHHhcCCCCchHHHHHHHHHHhcCChhhccccccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccC
Confidence 455555554 3567888777777666656655 68999999999999999988888888877777664
No 100
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=42.09 E-value=1.1e+02 Score=23.65 Aligned_cols=52 Identities=15% Similarity=0.190 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhh----CC--CCHHHHHHHHHHHHHHHh
Q psy9795 133 AIQKQLSDATAIIGKSDFPDKWPSLITDMVAKF----GT--GDFHIINGVLHTAHSLFK 185 (337)
Q Consensus 133 ~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l----~s--~d~~~~~~aL~~L~~i~k 185 (337)
.+|..-+.+++.|++. |-...|+|-+.+...+ .+ ......+||+..|..+-.
T Consensus 21 ~LRd~AA~lL~~I~~~-~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~ 78 (92)
T PF07571_consen 21 ALRDFAASLLAQICRK-FSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGP 78 (92)
T ss_pred HHHHHHHHHHHHHHHH-hccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 6899999999999976 5566777766666544 32 366789999999998844
No 101
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=40.80 E-value=3.7e+02 Score=32.36 Aligned_cols=150 Identities=10% Similarity=0.080 Sum_probs=84.0
Q ss_pred ChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHhcc-c-------
Q psy9795 154 WPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFTELFKATINLVGE-H------- 225 (337)
Q Consensus 154 WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~yr~~~~s~~l~~el~~il~~~~~~L~~lf~~l~~~~~~-~------- 225 (337)
|=-|+..+...+...+.+.+.+||.+|..+++.|-..+. .+.+. .|...+.- .+|..+-..... .
T Consensus 1345 W~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs-~~~W~---~if~~VLF---PIFd~l~~~~~~~~~~~~~~~ 1417 (1780)
T PLN03076 1345 WFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFS-LPLWE---RVFESVLF---PIFDYVRHAIDPSGGDEPEGQ 1417 (1780)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCC-HHHHH---HHHHHHHH---HHHHHHHHhhccccccccccc
Confidence 766888888877777888899999999999999844432 23332 33443322 334333221110 0
Q ss_pred ----CCChhHHHHHH-HHHHHHHHHhhhccccCChHHHHHhHHHHHHHHHHhhccCCCCCCc--cchhhhhhhhccchhH
Q psy9795 226 ----KDNPTALKVIY-NSLVVSCKIFYSLNFQDLPEYFEDNMVVWMPALHNLLVTDVPCLRT--DSIFVNSFRRFISDVE 298 (337)
Q Consensus 226 ----~~~~~~~~~~~-e~l~lilKif~~~~~~~lp~~~e~~l~~W~~~f~~iL~~~~p~l~~--d~~~~r~~~~~~~~~~ 298 (337)
..+.....+++ +++..+++-+-.+..... +.+...|+.+++++...+..+...+.. -.++.+|...-|...+
T Consensus 1418 ~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fF-d~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~ 1496 (1780)
T PLN03076 1418 GVDGDQGELDQDAWLYETCTLALQLVVDLFVKFY-PTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFS 1496 (1780)
T ss_pred cccccccchhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCC
Confidence 00111223332 444444444333321111 233567888888888888886544332 3688888888888874
Q ss_pred H--HhhhHHHHHHHH
Q psy9795 299 T--RRRAACDFVKIL 311 (337)
Q Consensus 299 ~--~k~~~~~~~~~~ 311 (337)
. +...+..|.+.|
T Consensus 1497 ~~~W~~i~~~~~~lf 1511 (1780)
T PLN03076 1497 DEKWLEVVLSLKEAA 1511 (1780)
T ss_pred HHHHHHHHHHHHHHH
Confidence 4 555334444444
No 102
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=40.29 E-value=3.1e+02 Score=25.49 Aligned_cols=138 Identities=13% Similarity=0.174 Sum_probs=85.3
Q ss_pred HHHhhcccCCCCChhhhHHHHHHHHHHHhCC-------ChHHHHHHHHHhCCCChHHHHHHHHHHhcccc-ccCcccCCC
Q psy9795 36 STQGVPNHDKNIQLESRSPTENFLESVETNQ-------NYPLLILTLVERADVDMTIRIAGAVAFKNYVK-RNWPLVEDE 107 (337)
Q Consensus 36 ~l~~tL~~~~spD~~~Rk~AE~~L~~~~~~p-------gf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~-~~W~~~~~~ 107 (337)
++..+|+ +|++.+|.+|-..|+.+.... .|+.-.++.+.+...+..+.++|.=.|.|.-. .++.
T Consensus 58 lI~~lL~---~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~----- 129 (254)
T PF04826_consen 58 LIGSLLN---DPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYH----- 129 (254)
T ss_pred HHHHHcC---CCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchh-----
Confidence 4444454 578899999988888654322 35555666555555677888888778888842 2222
Q ss_pred CCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhhCCCCCh-----HHHHHHHHhhCCC-CHHHHHHHHHHHH
Q psy9795 108 PDKIHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWP-----SLITDMVAKFGTG-DFHIINGVLHTAH 181 (337)
Q Consensus 108 ~~~i~~e~K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~WP-----eLl~~L~~~l~s~-d~~~~~~aL~~L~ 181 (337)
..+ ...+. .++..|.+.+..+|.+.-.++..++... ..=+ +.+..++..++.+ +.+....+|..+.
T Consensus 130 -~~l----~~~i~-~ll~LL~~G~~~~k~~vLk~L~nLS~np--~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ 201 (254)
T PF04826_consen 130 -HML----ANYIP-DLLSLLSSGSEKTKVQVLKVLVNLSENP--DMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFE 201 (254)
T ss_pred -hhH----HhhHH-HHHHHHHcCChHHHHHHHHHHHHhccCH--HHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHH
Confidence 112 22344 3577777777888888888888887541 1111 2344555666654 4455677777777
Q ss_pred HHHhhhhh
Q psy9795 182 SLFKRYRH 189 (337)
Q Consensus 182 ~i~k~yr~ 189 (337)
-|.+.++.
T Consensus 202 ni~~~~~~ 209 (254)
T PF04826_consen 202 NINENIKK 209 (254)
T ss_pred HHHHhhCc
Confidence 77776654
No 103
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=38.98 E-value=1.8e+02 Score=22.65 Aligned_cols=65 Identities=11% Similarity=0.051 Sum_probs=48.1
Q ss_pred HHHHHccCCHHHHHHHHHHHHHHHhh-hCC-CCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhh
Q psy9795 123 ILHLMLTSPEAIQKQLSDATAIIGKS-DFP-DKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRY 187 (337)
Q Consensus 123 Ll~~L~~~~~~Ir~ql~~~i~~Ia~~-DfP-~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~y 187 (337)
.+.-+.++...||..--..++.+++. +.+ ..+|.++..+.+.++.+|+=.-.+|..+|..++..+
T Consensus 8 al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~ 74 (92)
T PF10363_consen 8 ALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRH 74 (92)
T ss_pred HHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHC
Confidence 34445555567888777777776654 424 678999999999998887766678899999999876
No 104
>KOG2956|consensus
Probab=38.55 E-value=2.7e+02 Score=28.50 Aligned_cols=118 Identities=14% Similarity=0.147 Sum_probs=67.3
Q ss_pred hHhhhccchhh-HHH----HHHhhcccCCCCChhhhHHHHHHH-HHHHhC-CC-hHHHHHHHHHhCCCChHHHHHHHH-H
Q psy9795 22 CLEDMCDRNGE-FFC----STQGVPNHDKNIQLESRSPTENFL-ESVETN-QN-YPLLILTLVERADVDMTIRIAGAV-A 92 (337)
Q Consensus 22 ~~~~~~~~~~~-~~~----~l~~tL~~~~spD~~~Rk~AE~~L-~~~~~~-pg-f~~~Ll~i~~~~~~~~~iRq~AaI-~ 92 (337)
-|+.||..+.. |+. .+.-+|++..+++.++.+.||+.+ .-+... |. .+..+..++.+. ..-|-.|+| .
T Consensus 353 vL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt~---D~~~~~~~iKm 429 (516)
T KOG2956|consen 353 VLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILTA---DEPRAVAVIKM 429 (516)
T ss_pred HHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhcC---cchHHHHHHHH
Confidence 35677775553 332 456678877777777766666654 444443 42 344455555552 233455555 4
Q ss_pred HhccccccCcccCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCCCHHH
Q psy9795 93 FKNYVKRNWPLVEDEPDKIHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHI 172 (337)
Q Consensus 93 LKN~V~~~W~~~~~~~~~i~~e~K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~~~ 172 (337)
+++.+.+ ++.|+-.. --|++.|.+++...|.....
T Consensus 430 ~Tkl~e~-----------l~~EeL~~----------------------------------ll~diaP~~iqay~S~SS~V 464 (516)
T KOG2956|consen 430 LTKLFER-----------LSAEELLN----------------------------------LLPDIAPCVIQAYDSTSSTV 464 (516)
T ss_pred HHHHHhh-----------cCHHHHHH----------------------------------hhhhhhhHHHHHhcCchHHh
Confidence 5554432 33333111 23567777777777776666
Q ss_pred HHHHHHHHHHHHhhh
Q psy9795 173 INGVLHTAHSLFKRY 187 (337)
Q Consensus 173 ~~~aL~~L~~i~k~y 187 (337)
+..+..||-.++...
T Consensus 465 RKtaVfCLVamv~~v 479 (516)
T KOG2956|consen 465 RKTAVFCLVAMVNRV 479 (516)
T ss_pred hhhHHHhHHHHHHHH
Confidence 777777777777766
No 105
>KOG0889|consensus
Probab=38.39 E-value=4.5e+02 Score=33.67 Aligned_cols=157 Identities=15% Similarity=0.129 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHH----HHhhhCCCCChHHHHHHHHhhCCCCH----HHHHHHHHHHHHHHhhhhhhhhhh---hhHHHHH
Q psy9795 133 AIQKQLSDATAI----IGKSDFPDKWPSLITDMVAKFGTGDF----HIINGVLHTAHSLFKRYRHEFKSQ---KLWTEIK 201 (337)
Q Consensus 133 ~Ir~ql~~~i~~----Ia~~DfP~~WPeLl~~L~~~l~s~d~----~~~~~aL~~L~~i~k~yr~~~~s~---~l~~el~ 201 (337)
..+..+.+++.. +-...-|-++=.|+..|...+..+.. ..+.-.|..+-++++..+..+.+. |++.|+-
T Consensus 626 vl~phv~~Ii~~smela~~a~eplnYf~LLraLFRsigGg~~d~ly~e~lplL~~lLe~ln~l~~~~~s~~mkdLfvELc 705 (3550)
T KOG0889|consen 626 VLRPHVHDIISTSMELATTAPEPLNYFQLLRALFRSIGGGAFDSLYREVLPLLPNLLEILNHLLSSFHSQGMKDLFVELC 705 (3550)
T ss_pred hcccchhHHHHHHHHHHhcCCcchhHHHHHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHhhccCccchHHHHHHHH
Confidence 345555555554 33344566777899999988887633 334445556666666655544443 4444432
Q ss_pred HHHHHhhHHHHHHHHHHHH-HhcccCCChhHHHHHHHHHHHHHHHhhhccccCChHHH----HHhHHHHHHHHHHhhccC
Q psy9795 202 FVLDNFAKPFTELFKATIN-LVGEHKDNPTALKVIYNSLVVSCKIFYSLNFQDLPEYF----EDNMVVWMPALHNLLVTD 276 (337)
Q Consensus 202 ~il~~~~~~L~~lf~~l~~-~~~~~~~~~~~~~~~~e~l~lilKif~~~~~~~lp~~~----e~~l~~W~~~f~~iL~~~ 276 (337)
.-+..-...|+...|-++. ++....+. -++....+.+|-.|+..-.|+++ ++..+.||+.+...+.-.
T Consensus 706 lTvPvRLS~Llpylp~LM~PLv~aLkgs-------~~lvsQgLRtlelcvDnltPefL~~~mepv~~~lmqaLw~~l~~~ 778 (3550)
T KOG0889|consen 706 LTLPVRLSSLLPYLPLLMKPLVFALKGS-------PELVSQGLRTLELCVDNLTPEFLDPIMEPVRDDLMQALWSHLRPV 778 (3550)
T ss_pred HhhhHHHHHhhhhhhhhhhHHHHHhcCC-------HHHHHHHHhHHHHHHhcCChHhhhHHHHHHHHHHHHHHHHhccCC
Confidence 2111111222222222222 11111122 23445667777777777788877 456777888888777664
Q ss_pred CCCCCccchhhhhhhhccchh
Q psy9795 277 VPCLRTDSIFVNSFRRFISDV 297 (337)
Q Consensus 277 ~p~l~~d~~~~r~~~~~~~~~ 297 (337)
. ..+.-..-.|..+..||+.
T Consensus 779 ~-~~s~s~~a~rILGKlgG~N 798 (3550)
T KOG0889|consen 779 P-NYSYSHRALRILGKLGGRN 798 (3550)
T ss_pred C-CchHHHHHHHHHHhhcCcc
Confidence 3 2221222235556666665
No 106
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=38.07 E-value=2e+02 Score=22.78 Aligned_cols=84 Identities=12% Similarity=0.071 Sum_probs=52.5
Q ss_pred HHHHHccCCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHH
Q psy9795 123 ILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRYRHEFKSQKLWTEIKF 202 (337)
Q Consensus 123 Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~yr~~~~s~~l~~el~~ 202 (337)
.|+.|..+...|++.-..++...-.. +++++.+.+.+....++.....|.++..|++..+.... ..
T Consensus 5 ~L~~L~~s~~~I~~lt~~~~~~~~~a------~~Iv~~i~~~~~~~~~~~kL~~LYlindIl~n~~~~~~--------~~ 70 (121)
T smart00582 5 KLESLNNSQESIQTLTKWAIEHASHA------KEIVELWEKYIKKAPPPRKLPLLYLLDSIVQNSKRKYG--------SE 70 (121)
T ss_pred HHHhccccHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhCCccceehhHHhHHHHHHHHhhccH--------HH
Confidence 44555555566766666666544433 36777777777766666778999999999998743211 12
Q ss_pred HHHHhhHHHHHHHHHHHH
Q psy9795 203 VLDNFAKPFTELFKATIN 220 (337)
Q Consensus 203 il~~~~~~L~~lf~~l~~ 220 (337)
..+.|.+.+...|+.+..
T Consensus 71 f~~~~~~~~~~~~~~~~~ 88 (121)
T smart00582 71 FGDELGPVFQDALRDVLG 88 (121)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 234555555555555554
No 107
>PF08620 RPAP1_C: RPAP1-like, C-terminal; InterPro: IPR013929 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the C-terminal region that contains the motif GLHHH. This region is conserved from yeast to humans.
Probab=36.19 E-value=69 Score=24.04 Aligned_cols=31 Identities=13% Similarity=-0.035 Sum_probs=28.0
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHHHhhhh
Q psy9795 158 ITDMVAKFGTGDFHIINGVLHTAHSLFKRYR 188 (337)
Q Consensus 158 l~~L~~~l~s~d~~~~~~aL~~L~~i~k~yr 188 (337)
+++++.+..|..+.++-.||.+|..|+.+++
T Consensus 41 i~El~~L~RSsv~~QR~~al~~L~~Il~~~~ 71 (73)
T PF08620_consen 41 IQELFHLSRSSVPSQRCIALQTLGRILYRAG 71 (73)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHh
Confidence 7889999999999999999999999999763
No 108
>KOG0392|consensus
Probab=35.87 E-value=2.9e+02 Score=31.85 Aligned_cols=113 Identities=12% Similarity=0.042 Sum_probs=77.8
Q ss_pred hHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHHHHHHHHHHHHcc-----CC---HHHHHHHH
Q psy9795 68 YPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIKGLILHLMLT-----SP---EAIQKQLS 139 (337)
Q Consensus 68 f~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~~IK~~Ll~~L~~-----~~---~~Ir~ql~ 139 (337)
|..-|+.-+.++ .-++|.-|+|.++-.++.|...... .. -+-..+|-.-+-+|.. ++ ..||.+++
T Consensus 78 ~~e~L~~~~~~~--~we~rhg~~i~lrei~~~h~~~~~~--~~---led~~~rll~v~~Ldrf~dfisd~vvapVre~ca 150 (1549)
T KOG0392|consen 78 FLEELVNDLFEP--QWEIRHGAAIALREILKTHGDSLSY--EL---LEDLLIRLLCVLALDRFGDFISDNVVAPVREACA 150 (1549)
T ss_pred HHHHHHHHhcCc--hhhhhcCcchhhhhHHHHhcchhhH--HH---HHHHHHHHHHHHHHHHhcccccccchhhhHHHHH
Confidence 344444444443 5789999999999999988763211 01 1112333333333322 11 36899999
Q ss_pred HHHHHHHhhhCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhh
Q psy9795 140 DATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRY 187 (337)
Q Consensus 140 ~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~y 187 (337)
.++....++.-+..--+-++.+.+++...+.+.++|+|..+++.+-.+
T Consensus 151 q~L~~~l~~~~~s~~~~~~~il~q~~~q~~w~ir~Ggll~iky~~air 198 (1549)
T KOG0392|consen 151 QALGAYLKHMDESLIKETLDILLQMLRQPNWEIRHGGLLGIKYNVAIR 198 (1549)
T ss_pred HHHHHHHHhhhhHhhHHHHHHHHHHHcCcchhheechHHHHHHHHHHH
Confidence 999999999888777788888888888888889999999888877643
No 109
>KOG1949|consensus
Probab=35.51 E-value=6.2e+02 Score=27.58 Aligned_cols=115 Identities=14% Similarity=0.142 Sum_probs=62.4
Q ss_pred CchhHhhhccchh------hHHHHHHhhcccCCCCChhhhHHHHHHHHHHHhCCChHHHHHHHHHhCCCChHHHHHHHHH
Q psy9795 19 TNQCLEDMCDRNG------EFFCSTQGVPNHDKNIQLESRSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVA 92 (337)
Q Consensus 19 ~~~~~~~~~~~~~------~~~~~l~~tL~~~~spD~~~Rk~AE~~L~~~~~~pgf~~~Ll~i~~~~~~~~~iRq~AaI~ 92 (337)
.+.|+|+|++ ++ -+..-++++|.+=.+ ...+|+-.|+.|-.+.+ .+|..-+.. .+..||.-|+..
T Consensus 127 E~d~iq~~~~-haiha~rsp~~sk~r~Vl~~F~h-qkk~~qgVeeml~rL~~-----p~l~R~L~a--~Ns~VrsnAa~l 197 (1005)
T KOG1949|consen 127 ENDCIQDFMF-HAIHAPRSPVHSKVREVLSYFHH-QKKVRQGVEEMLYRLYK-----PILWRGLKA--RNSEVRSNAALL 197 (1005)
T ss_pred hhhHHHHHHH-HHhcCCCChHHHHHHHHHHHHHH-HHHHhhhHHHHHHHHHh-----HHHHHhhcc--CchhhhhhHHHH
Confidence 4679999987 43 122233333322110 00244555555554422 222222232 367999999999
Q ss_pred HhccccccCcccCCCCCCCCHHHHHHHHHH----HHHHHccCCHHHHHHHHHHHHHHHhhh
Q psy9795 93 FKNYVKRNWPLVEDEPDKIHASDREAIKGL----ILHLMLTSPEAIQKQLSDATAIIGKSD 149 (337)
Q Consensus 93 LKN~V~~~W~~~~~~~~~i~~e~K~~IK~~----Ll~~L~~~~~~Ir~ql~~~i~~Ia~~D 149 (337)
|=|...-.- +....+++..+-++ +...|-+.-+.||+....-+..|...=
T Consensus 198 f~~~fP~~d-------pd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~f 251 (1005)
T KOG1949|consen 198 FVEAFPIRD-------PDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKF 251 (1005)
T ss_pred HHHhccCCC-------CCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Confidence 877754322 13555666666554 444444455789987777676666543
No 110
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=35.22 E-value=3.9e+02 Score=25.15 Aligned_cols=131 Identities=11% Similarity=0.136 Sum_probs=75.4
Q ss_pred CCCChhhhHHHHHHHHHHHhCCChHHHHHHHHHhCCCChHHHHHHHHHHhcccccc-CcccCC-CCCCC--------CHH
Q psy9795 45 KNIQLESRSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRN-WPLVED-EPDKI--------HAS 114 (337)
Q Consensus 45 ~spD~~~Rk~AE~~L~~~~~~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~-W~~~~~-~~~~i--------~~e 114 (337)
.+++..+|..|=..|-.+. .|.....|...+.+ +.+..+|..|+..|...-..+ +.+--+ -.... ...
T Consensus 84 ~d~~~~vr~~a~~aLg~~~-~~~a~~~li~~l~~-d~~~~vR~~aa~aL~~~~~~~a~~~l~~~l~~~~~~~a~~~~~~~ 161 (335)
T COG1413 84 SDEDPRVRDAAADALGELG-DPEAVPPLVELLEN-DENEGVRAAAARALGKLGDERALDPLLEALQDEDSGSAAAALDAA 161 (335)
T ss_pred cCCCHHHHHHHHHHHHccC-ChhHHHHHHHHHHc-CCcHhHHHHHHHHHHhcCchhhhHHHHHHhccchhhhhhhhccch
Confidence 3445577888777665543 35567777777775 457888888888877665443 221000 00000 000
Q ss_pred HHHHHHHHHHHH----------------HccCCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCCCHHHHHHHHH
Q psy9795 115 DREAIKGLILHL----------------MLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLH 178 (337)
Q Consensus 115 ~K~~IK~~Ll~~----------------L~~~~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~~~~~~aL~ 178 (337)
. ..+|...+.. +......||...+.++..+.... .++.+.+...++..+......++.
T Consensus 162 ~-~~~r~~a~~~l~~~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~-----~~~~~~l~~~~~~~~~~vr~~~~~ 235 (335)
T COG1413 162 L-LDVRAAAAEALGELGDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN-----VEAADLLVKALSDESLEVRKAALL 235 (335)
T ss_pred H-HHHHHHHHHHHHHcCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch-----hhHHHHHHHHhcCCCHHHHHHHHH
Confidence 0 0233333333 33333457777777777777664 567778888887777777766666
Q ss_pred HHHHH
Q psy9795 179 TAHSL 183 (337)
Q Consensus 179 ~L~~i 183 (337)
.|..+
T Consensus 236 ~l~~~ 240 (335)
T COG1413 236 ALGEI 240 (335)
T ss_pred Hhccc
Confidence 66553
No 111
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are univ
Probab=34.75 E-value=2e+02 Score=23.66 Aligned_cols=46 Identities=11% Similarity=0.248 Sum_probs=36.4
Q ss_pred HHHHHHhhhCC-CCChHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHhh
Q psy9795 141 ATAIIGKSDFP-DKWPSLITDMVAKFGTG--DFHIINGVLHTAHSLFKR 186 (337)
Q Consensus 141 ~i~~Ia~~DfP-~~WPeLl~~L~~~l~s~--d~~~~~~aL~~L~~i~k~ 186 (337)
.+..||..-|- ..+++.+..|-..+.+. +-.+++-+|.+|..+++.
T Consensus 21 ~m~eIa~~t~~~~~~~~Im~~l~kRL~~~~k~WR~vyKaL~lleyLl~n 69 (123)
T cd03571 21 LMAEIARATYNYVEFQEIMSMLWKRLNDKGKNWRHVYKALTLLEYLLKN 69 (123)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHh
Confidence 35566655443 57889999999999765 777899999999999996
No 112
>KOG0946|consensus
Probab=34.15 E-value=6.7e+02 Score=27.60 Aligned_cols=190 Identities=16% Similarity=0.192 Sum_probs=99.7
Q ss_pred HHHHHhCCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCC----CCC------CCCHHHHHHHHHHHHHHH-
Q psy9795 59 LESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVED----EPD------KIHASDREAIKGLILHLM- 127 (337)
Q Consensus 59 L~~~~~~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~----~~~------~i~~e~K~~IK~~Ll~~L- 127 (337)
=+.+-++++++.+|++.+.. .|.+||..|.-++-+.++.+-..-.+ .+. .+=.+.|+.||+.-+-.|
T Consensus 114 ae~fik~qd~I~lll~~~e~--~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~ 191 (970)
T KOG0946|consen 114 AEQFIKNQDNITLLLQSLEE--FDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLS 191 (970)
T ss_pred HHHHHcCchhHHHHHHHHHh--hchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHH
Confidence 35677789999999999876 47899999998888888765321100 000 111344555555433322
Q ss_pred --ccCCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCC---CH-HHHHHHHHHHHHHHhhhhhhhhhhhhHHHHH
Q psy9795 128 --LTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTG---DF-HIINGVLHTAHSLFKRYRHEFKSQKLWTEIK 201 (337)
Q Consensus 128 --~~~~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~---d~-~~~~~aL~~L~~i~k~yr~~~~s~~l~~el~ 201 (337)
.+..+.|++.++ +.+.+..|+..+... |- -.++-+|..|.-+.|+-- .+...++|
T Consensus 192 eL~k~n~~IQKlVA--------------FENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~---SNQ~~FrE-- 252 (970)
T KOG0946|consen 192 ELVKDNSSIQKLVA--------------FENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNI---SNQNFFRE-- 252 (970)
T ss_pred HHHccCchHHHHHH--------------HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCc---chhhHHhc--
Confidence 223344443332 345556666666532 22 357788888888888641 12233344
Q ss_pred HHHHHhhHHHHHHHHHHHHHh-cccCCChhHHHHHHHHHHHHHHHhhhccccCChHHHH----HhHHH--HHHHHHHhhc
Q psy9795 202 FVLDNFAKPFTELFKATINLV-GEHKDNPTALKVIYNSLVVSCKIFYSLNFQDLPEYFE----DNMVV--WMPALHNLLV 274 (337)
Q Consensus 202 ~il~~~~~~L~~lf~~l~~~~-~~~~~~~~~~~~~~e~l~lilKif~~~~~~~lp~~~e----~~l~~--W~~~f~~iL~ 274 (337)
....|-|..+++....-- .....+ .+....++.++.|.+.++....+.... ..|.. -|+.++.++-
T Consensus 253 ---~~~i~rL~klL~~f~~~d~Ev~~W~----~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~ 325 (970)
T KOG0946|consen 253 ---GSYIPRLLKLLSVFEFGDGEVFGWS----TQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILM 325 (970)
T ss_pred ---cccHHHHHhhcCcccccCccccccc----HHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHc
Confidence 333332222222111100 000111 224455677777777777766665441 12222 5556666666
Q ss_pred cC
Q psy9795 275 TD 276 (337)
Q Consensus 275 ~~ 276 (337)
.+
T Consensus 326 ~~ 327 (970)
T KOG0946|consen 326 HP 327 (970)
T ss_pred CC
Confidence 65
No 113
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=33.99 E-value=2.7e+02 Score=29.67 Aligned_cols=72 Identities=17% Similarity=0.243 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhhCC-C---CChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhhh
Q psy9795 117 EAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFP-D---KWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRYR 188 (337)
Q Consensus 117 ~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP-~---~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~yr 188 (337)
..|-+.++..|-+.++.+|.+-+..++.++..--- + .-.-|-..|.+.+....+...-..|.++..|....+
T Consensus 603 ~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~ 678 (975)
T COG5181 603 SMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHR 678 (975)
T ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhc
Confidence 34556666677776777777777666666543210 0 111122333344444444444444444444444443
No 114
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=33.91 E-value=2.2e+02 Score=22.04 Aligned_cols=73 Identities=14% Similarity=0.206 Sum_probs=53.1
Q ss_pred ChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhhCCCCChHHHHHH
Q psy9795 82 DMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDM 161 (337)
Q Consensus 82 ~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L 161 (337)
...+|--|.+.|++.|+++= .+......|-..++..|.++++.|.-....+++.++... |+ +.++.|
T Consensus 16 ~~PvRa~gL~~L~~Li~~~~---------~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~-p~---~vl~~L 82 (92)
T PF10363_consen 16 LPPVRAHGLVLLRKLIESKS---------EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRH-PD---EVLPIL 82 (92)
T ss_pred CcchHHHHHHHHHHHHHcCC---------cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHC-hH---HHHHHH
Confidence 46899999999999998863 223445667777777777788888888888888888663 32 267777
Q ss_pred HHhhCC
Q psy9795 162 VAKFGT 167 (337)
Q Consensus 162 ~~~l~s 167 (337)
++...+
T Consensus 83 ~~~y~~ 88 (92)
T PF10363_consen 83 LDEYAD 88 (92)
T ss_pred HHHHhC
Confidence 665443
No 115
>PF06086 Pox_A30L_A26L: Orthopoxvirus A26L/A30L protein; InterPro: IPR009285 This family consists of several Orthopoxvirus A26L and A30L proteins. The Vaccinia A30L gene is regulated by a late promoter and encodes a protein of approximately 9 kDa. It is thought that the A30L protein is needed for vaccinia virus morphogenesis, specifically the association of the dense viroplasm with viral membranes [].
Probab=33.39 E-value=36 Score=31.03 Aligned_cols=48 Identities=27% Similarity=0.466 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhccccccCcccCCCCCCCCHHHHHHHHHHHHHHHccCC
Q psy9795 84 TIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIKGLILHLMLTSP 131 (337)
Q Consensus 84 ~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~~IK~~Ll~~L~~~~ 131 (337)
.+|.+....||++|.++|...=.+...||-++|..||+-|=+.+.+.+
T Consensus 17 d~~~~~I~~F~slV~~~W~~~L~~~sCI~R~~RKiIRnViR~ym~s~p 64 (220)
T PF06086_consen 17 DVNVASIREFKSLVSETWNKPLNENSCIPREDRKIIRNVIREYMKSAP 64 (220)
T ss_pred cCccchHHHHHHHHHHhcCCccccccccCHHHHHHHHHHHHHHHHhCC
Confidence 345566778999999999854333468999999999988888877753
No 116
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=33.06 E-value=1.3e+02 Score=24.79 Aligned_cols=77 Identities=13% Similarity=0.188 Sum_probs=0.0
Q ss_pred ccCcccCCCCCCCCHHHHHHHHHHHHHHH-ccCCHHHHHHHHHHHHHHHhhhCCCCChHHHHHH---------HHhhCCC
Q psy9795 99 RNWPLVEDEPDKIHASDREAIKGLILHLM-LTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDM---------VAKFGTG 168 (337)
Q Consensus 99 ~~W~~~~~~~~~i~~e~K~~IK~~Ll~~L-~~~~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L---------~~~l~s~ 168 (337)
..|..+.. .+.+++-+.+| .|++.| .+.++.+-...|.=|...+++ +|+--..+ .++++++
T Consensus 28 ~FW~ENa~---kf~~~~~~llk-~L~~lL~~s~d~~~laVac~Dig~~vr~-----~p~gr~ii~~lg~K~~vM~Lm~h~ 98 (119)
T PF11698_consen 28 KFWRENAD---KFEENNFELLK-KLIKLLDKSDDPTTLAVACHDIGEFVRH-----YPNGRNIIEKLGAKERVMELMNHE 98 (119)
T ss_dssp HHHHHHSG---GGSSGGGHHHH-HHHHHH-SHHHHHHHHHHHHHHHHHHHH------GGGHHHHHHHSHHHHHHHHTS-S
T ss_pred cHHHHHHH---HHHHcccHHHH-HHHHHHccCCCcceeehhhcchHHHHHH-----ChhHHHHHHhcChHHHHHHHhcCC
Q ss_pred CHHHHHHHHHHHHHHH
Q psy9795 169 DFHIINGVLHTAHSLF 184 (337)
Q Consensus 169 d~~~~~~aL~~L~~i~ 184 (337)
|++..+-||.|+..++
T Consensus 99 d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 99 DPEVRYEALLAVQKLM 114 (119)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
No 117
>KOG2021|consensus
Probab=32.35 E-value=7.1e+02 Score=27.32 Aligned_cols=83 Identities=14% Similarity=0.183 Sum_probs=54.9
Q ss_pred HHHHHHHHHccCC--HHHHHHHHHHHHHHHhhhCCCCChHHHHHHHH-hhCCCCHHHHHHHHHHHHHHHhhhhhhhhhhh
Q psy9795 119 IKGLILHLMLTSP--EAIQKQLSDATAIIGKSDFPDKWPSLITDMVA-KFGTGDFHIINGVLHTAHSLFKRYRHEFKSQK 195 (337)
Q Consensus 119 IK~~Ll~~L~~~~--~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~-~l~s~d~~~~~~aL~~L~~i~k~yr~~~~s~~ 195 (337)
+-+.++..+..-+ ..+|+..-..+.++...--|+--| ++|.+.+ ++++.|......-|-.++++.-+|.-
T Consensus 696 ~ldvil~~ls~f~k~E~iRsavrft~hRmI~~lg~~vlP-fipklie~lL~s~d~kEmvdfl~flsQLihkfk~------ 768 (980)
T KOG2021|consen 696 ILDVILVTLSFFNKFENIRSAVRFTFHRMIPILGNKVLP-FIPKLIELLLSSTDLKEMVDFLGFLSQLIHKFKT------ 768 (980)
T ss_pred HHHHHHHHHhhccccchhHHHHHHHHHHHHHhcchhhhc-chHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH------
Confidence 3444555555433 468888877888877776666666 3444444 45677999999999999999999832
Q ss_pred hHHHHHHHHHHhhHHH
Q psy9795 196 LWTEIKFVLDNFAKPF 211 (337)
Q Consensus 196 l~~el~~il~~~~~~L 211 (337)
...++++++.+|+
T Consensus 769 ---~~~~ilnqmlppl 781 (980)
T KOG2021|consen 769 ---DCYQILNQMLPPL 781 (980)
T ss_pred ---HHHHHHHHHHHHH
Confidence 3335566666643
No 118
>KOG4224|consensus
Probab=31.57 E-value=1.1e+02 Score=30.37 Aligned_cols=149 Identities=13% Similarity=0.084 Sum_probs=88.2
Q ss_pred hhHhhhccchhhHHHHHHhhcccCCCCChhhhHHHHHHHHHHHhCCChHHHHHHHHHhCCCChHHHHHHHHHHhcccccc
Q psy9795 21 QCLEDMCDRNGEFFCSTQGVPNHDKNIQLESRSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRN 100 (337)
Q Consensus 21 ~~~~~~~~~~~~~~~~l~~tL~~~~spD~~~Rk~AE~~L~~~~~~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~ 100 (337)
--+|.|+| +-+|.|.-.|++.+-..-|.+..|-| .-|-+.-|..+..+ -+..+|.-|.=.|-|+...+
T Consensus 131 Li~qmmtd-~vevqcnaVgCitnLaT~d~nk~kiA---------~sGaL~pltrLaks--kdirvqrnatgaLlnmThs~ 198 (550)
T KOG4224|consen 131 LILQMMTD-GVEVQCNAVGCITNLATFDSNKVKIA---------RSGALEPLTRLAKS--KDIRVQRNATGALLNMTHSR 198 (550)
T ss_pred HHHHhcCC-CcEEEeeehhhhhhhhccccchhhhh---------hccchhhhHhhccc--chhhHHHHHHHHHHHhhhhh
Confidence 45788888 88888887777764332222222222 23555556563332 25566665555555553322
Q ss_pred CcccCC-CCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHh-----hhCCCCChHHHHHHHHhhCCCCHHHHH
Q psy9795 101 WPLVED-EPDKIHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGK-----SDFPDKWPSLITDMVAKFGTGDFHIIN 174 (337)
Q Consensus 101 W~~~~~-~~~~i~~e~K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~-----~DfP~~WPeLl~~L~~~l~s~d~~~~~ 174 (337)
=+.+.- ....++ .|+.++.+.+..+|--++.+|+.|+- .-.-+.=|.+++.|++++.+++....-
T Consensus 199 EnRr~LV~aG~lp---------vLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkc 269 (550)
T KOG4224|consen 199 ENRRVLVHAGGLP---------VLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKC 269 (550)
T ss_pred hhhhhhhccCCch---------hhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHH
Confidence 110000 001121 35566666778899999999999873 333356788999999999998776655
Q ss_pred HHHHHHHHHHhhhhhh
Q psy9795 175 GVLHTAHSLFKRYRHE 190 (337)
Q Consensus 175 ~aL~~L~~i~k~yr~~ 190 (337)
-|=..|+-+.-+-+|.
T Consensus 270 qA~lALrnlasdt~Yq 285 (550)
T KOG4224|consen 270 QAGLALRNLASDTEYQ 285 (550)
T ss_pred HHHHHHhhhcccchhh
Confidence 5556677766665554
No 119
>KOG1967|consensus
Probab=30.70 E-value=4.1e+02 Score=29.60 Aligned_cols=99 Identities=17% Similarity=0.216 Sum_probs=66.3
Q ss_pred CCHHHHHHHHHHHHHHHhhhCC-----CCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHH
Q psy9795 130 SPEAIQKQLSDATAIIGKSDFP-----DKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVL 204 (337)
Q Consensus 130 ~~~~Ir~ql~~~i~~Ia~~DfP-----~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~yr~~~~s~~l~~el~~il 204 (337)
.+..+|..+-.+++.+..+ -| .+-|.|+|-|++.++-.|.......+.+++..+.+.. .+..+ =+
T Consensus 879 ~~~~~K~~yl~~LshVl~~-vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~------tL~t~---~~ 948 (1030)
T KOG1967|consen 879 APGSQKHNYLEALSHVLTN-VPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESE------TLQTE---HL 948 (1030)
T ss_pred CCccchhHHHHHHHHHHhc-CCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcc------ccchH---HH
Confidence 4667888888888888773 45 3789999999999999999888899999999988642 11111 12
Q ss_pred HHhhHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHhhhccc
Q psy9795 205 DNFAKPFTELFKATINLVGEHKDNPTALKVIYNSLVVSCKIFYSLNF 251 (337)
Q Consensus 205 ~~~~~~L~~lf~~l~~~~~~~~~~~~~~~~~~e~l~lilKif~~~~~ 251 (337)
+ .++|.++.+-..+.++. ......++++...++.
T Consensus 949 ~-------Tlvp~lLsls~~~~n~~------~~VR~~ALqcL~aL~~ 982 (1030)
T KOG1967|consen 949 S-------TLVPYLLSLSSDNDNNM------MVVREDALQCLNALTR 982 (1030)
T ss_pred h-------HHHHHHHhcCCCCCcch------hHHHHHHHHHHHHHhc
Confidence 3 34455555533333321 1223567778877765
No 120
>KOG2160|consensus
Probab=29.87 E-value=5.4e+02 Score=25.19 Aligned_cols=136 Identities=13% Similarity=0.108 Sum_probs=79.3
Q ss_pred cCCCCChhhhHHHHHHHHHHHh-CC---------ChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCC
Q psy9795 43 HDKNIQLESRSPTENFLESVET-NQ---------NYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIH 112 (337)
Q Consensus 43 ~~~spD~~~Rk~AE~~L~~~~~-~p---------gf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~ 112 (337)
--.++|++.|..|-.-+-.+.+ +| ||...|+.+++++ .+.++|.-|...+=..|+++=. ...
T Consensus 132 ~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~-~~~~~r~kaL~AissLIRn~~~-------g~~ 203 (342)
T KOG2160|consen 132 YLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSD-DPNTVRTKALFAISSLIRNNKP-------GQD 203 (342)
T ss_pred HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccC-CCchHHHHHHHHHHHHHhcCcH-------HHH
Confidence 4456788999999998876543 33 6899999999864 5778877776666666665421 111
Q ss_pred HHHHHHHHHHHHHHHcc--CCHHHHHHHHHHHHHHHhhhCCC---CChHHHHHHHHhhCC-CCHHHHHHHHHHHHHHHhh
Q psy9795 113 ASDREAIKGLILHLMLT--SPEAIQKQLSDATAIIGKSDFPD---KWPSLITDMVAKFGT-GDFHIINGVLHTAHSLFKR 186 (337)
Q Consensus 113 ~e~K~~IK~~Ll~~L~~--~~~~Ir~ql~~~i~~Ia~~DfP~---~WPeLl~~L~~~l~s-~d~~~~~~aL~~L~~i~k~ 186 (337)
.--|..==+.|..+|.+ .+...+.+....++.+...+.-+ .=+..++..+..+.+ .+....+.++..+-.....
T Consensus 204 ~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 204 EFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLSE 283 (342)
T ss_pred HHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence 11111112345566666 34567777788888887765442 123344444444443 3444445555555444444
No 121
>KOG1060|consensus
Probab=29.81 E-value=5.7e+02 Score=28.09 Aligned_cols=55 Identities=9% Similarity=0.095 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhh
Q psy9795 131 PEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKR 186 (337)
Q Consensus 131 ~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~ 186 (337)
...||+-.|.+|-.+-+.| |+.-++|++.+-.++...++-.+-.|+.++.++|-+
T Consensus 156 s~yVRk~AA~AIpKLYsLd-~e~k~qL~e~I~~LLaD~splVvgsAv~AF~evCPe 210 (968)
T KOG1060|consen 156 SPYVRKTAAHAIPKLYSLD-PEQKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPE 210 (968)
T ss_pred cHHHHHHHHHhhHHHhcCC-hhhHHHHHHHHHHHhcCCCCcchhHHHHHHHHhchh
Confidence 3678999999999998888 677788998888888887877777788888777643
No 122
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=29.36 E-value=3.9e+02 Score=28.96 Aligned_cols=69 Identities=12% Similarity=0.209 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhhhhhh
Q psy9795 117 EAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRYRHEF 191 (337)
Q Consensus 117 ~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~yr~~~ 191 (337)
...++-|+.-|..-+..++.+.+.+++...+ +|..-|-+++.+...+.++ .-++-.++..+.|.|.+.+
T Consensus 461 dVF~diLl~Nl~H~~~~~k~~~~y~l~~liK--~~~~~p~yl~~Il~k~~sd----fi~~~~il~~~~k~F~~~~ 529 (993)
T COG5234 461 DVFQDILLTNLQHWDVKVKQLSAYSLRQLIK--YPKELPIYLPPILDKLSSD----FIFGYTILASIIKGFLFPF 529 (993)
T ss_pred HHHHHHHHhhhhccchhhhhhccccHHHHhc--CcccCchhhhHHhhhCchh----hhcchhhHHHHHHHhcCcc
Confidence 4567778888877777889999999999954 5788898999998887654 2344455777777775543
No 123
>KOG2274|consensus
Probab=29.29 E-value=8.4e+02 Score=27.22 Aligned_cols=116 Identities=10% Similarity=-0.051 Sum_probs=59.7
Q ss_pred HHHHHHhhcccCCCCChhhhHHHHHHHHHHHhCCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCC
Q psy9795 33 FFCSTQGVPNHDKNIQLESRSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIH 112 (337)
Q Consensus 33 ~~~~l~~tL~~~~spD~~~Rk~AE~~L~~~~~~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~ 112 (337)
|..-|..+..+-. ..-..|+-|=-.|+++-. .+|.-+.+...++.. ..++..++..+..++..|.+. ..+.
T Consensus 37 f~~aL~~va~~~~-~sl~lRQ~A~v~L~~yie--~hW~~~~E~fr~~~~--~~e~~K~~IRe~Ll~~l~~sn----~ki~ 107 (1005)
T KOG2274|consen 37 FGVALAEVAANKD-ASLPLRQIALVLLKRYIE--KHWSPNFEAFRYPLI--VSEEVKALIREQLLNLLDDSN----SKIR 107 (1005)
T ss_pred HHHHHHHHHhCcc-cCchHHHHHHHHHHHHHH--HhCCChHhhccCCCc--ccHHHHHHHHHHHHhhhhccc----cccc
Confidence 5555544443221 111667777666666533 133333344444332 456677777777777788422 2343
Q ss_pred HHHHHHHHHHHHHHHccC--C---HHHHHHHHHHHH---HHHhhhCCCCChHHHHHHH
Q psy9795 113 ASDREAIKGLILHLMLTS--P---EAIQKQLSDATA---IIGKSDFPDKWPSLITDMV 162 (337)
Q Consensus 113 ~e~K~~IK~~Ll~~L~~~--~---~~Ir~ql~~~i~---~Ia~~DfP~~WPeLl~~L~ 162 (337)
.+.-..|. .+... | +.+-..+-.+++ ..+.+++++-|++|...+.
T Consensus 108 ~~vay~is-----~Ia~~D~Pd~WpElv~~i~~~l~~~n~n~i~~am~vL~el~~ev~ 160 (1005)
T KOG2274|consen 108 SAVAYAIS-----SIAAVDYPDEWPELVPFILKLLSSGNENSIHGAMRVLAELSDEVD 160 (1005)
T ss_pred hHHHHHHH-----HHHhccCchhhHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHH
Confidence 33322222 22222 1 334444445555 7777777777777777775
No 124
>KOG1248|consensus
Probab=28.61 E-value=9.4e+02 Score=27.56 Aligned_cols=202 Identities=10% Similarity=0.132 Sum_probs=105.1
Q ss_pred CCCCChhhhHHHHHHHHHH-HhCC----ChHHHHHH--HHHhCCCChHHHHHHHHHHhcccc--ccCcccCCCCCCCCHH
Q psy9795 44 DKNIQLESRSPTENFLESV-ETNQ----NYPLLILT--LVERADVDMTIRIAGAVAFKNYVK--RNWPLVEDEPDKIHAS 114 (337)
Q Consensus 44 ~~spD~~~Rk~AE~~L~~~-~~~p----gf~~~Ll~--i~~~~~~~~~iRq~AaI~LKN~V~--~~W~~~~~~~~~i~~e 114 (337)
..+.+...|+.+=.-|+.+ +..+ +|...++. |+...+++...|+.|--.|...-+ .+-. ++..+ .++
T Consensus 706 ~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d---~g~e~-~~~ 781 (1176)
T KOG1248|consen 706 FQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLD---DGNEP-ASA 781 (1176)
T ss_pred HhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhc---ccccc-hHH
Confidence 3444456666666667654 4456 56665553 344567888999999877777663 2221 11112 111
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhhCC-----CCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhhhh
Q psy9795 115 DREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFP-----DKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRYRH 189 (337)
Q Consensus 115 ~K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP-----~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~yr~ 189 (337)
.-+..=..|...+......++..=..++..|+. +|- +.-+.+++.++.++.+++...+.+|+..+..++.++.-
T Consensus 782 ~lnefl~~Isagl~gd~~~~~as~Ivai~~il~-e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe 860 (1176)
T KOG1248|consen 782 ILNEFLSIISAGLVGDSTRVVASDIVAITHILQ-EFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPE 860 (1176)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCH
Confidence 112222233333333222221111233444442 222 23567888888889999999999999999999987621
Q ss_pred hhhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHhhhccccCChHHHHHhHHHHHHHH
Q psy9795 190 EFKSQKLWTEIKFVLDNFAKPFTELFKATINLVGEHKDNPTALKVIYNSLVVSCKIFYSLNFQDLPEYFEDNMVVWMPAL 269 (337)
Q Consensus 190 ~~~s~~l~~el~~il~~~~~~L~~lf~~l~~~~~~~~~~~~~~~~~~e~l~lilKif~~~~~~~lp~~~e~~l~~W~~~f 269 (337)
.++. +.+.++++.+..+.... .......+.+++=|..+.+-..++..++++....|++.-
T Consensus 861 ------------~~l~---~~~~~LL~sll~ls~d~-----k~~~r~Kvr~LlekLirkfg~~eLe~~~pee~~klL~nI 920 (1176)
T KOG1248|consen 861 ------------ECLS---PHLEELLPSLLALSHDH-----KIKVRKKVRLLLEKLIRKFGAEELESFLPEEDMKLLTNI 920 (1176)
T ss_pred ------------HHHh---hhHHHHHHHHHHHHHhh-----hHHHHHHHHHHHHHHHHHhCHHHHHhhCHHHHHHHHHHH
Confidence 1222 23335566666644211 112233333444444444444556666655555555544
Q ss_pred H
Q psy9795 270 H 270 (337)
Q Consensus 270 ~ 270 (337)
.
T Consensus 921 R 921 (1176)
T KOG1248|consen 921 R 921 (1176)
T ss_pred H
Confidence 3
No 125
>PF09058 L27_1: L27_1; InterPro: IPR015143 The L27 domain is a protein interaction module that exists in a large family of scaffold proteins, functioning as an organisation centre of large protein assemblies required for the establishment and maintenance of cell polarity. L27 domains form specific heterotetrameric complexes, in which each domain contains three alpha-helices []. ; PDB: 3LRA_A 1RSO_A.
Probab=27.76 E-value=2e+02 Score=21.02 Aligned_cols=46 Identities=17% Similarity=0.307 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy9795 172 IINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFTELFKATINL 221 (337)
Q Consensus 172 ~~~~aL~~L~~i~k~yr~~~~s~~l~~el~~il~~~~~~L~~lf~~l~~~ 221 (337)
..+.||..|.+.+.+..- ..+.+++..++.++..|.. .+|..++.+
T Consensus 7 dA~rALelLe~y~~~L~~-~~D~~lr~~ierli~ifkS---~LF~ALLDI 52 (64)
T PF09058_consen 7 DAHRALELLEEYHNKLSR-PEDEELRTAIERLINIFKS---RLFQALLDI 52 (64)
T ss_dssp HHHHHHHHHHHHHHTTSS-SS-CCHHHHHHHHHHHHHS---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCC-cccHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 357788888887776542 2345677777777777777 677777765
No 126
>PRK04330 hypothetical protein; Provisional
Probab=27.34 E-value=3e+02 Score=21.48 Aligned_cols=21 Identities=14% Similarity=0.139 Sum_probs=14.4
Q ss_pred CCCCChhhhHHHHHHHHHHHh
Q psy9795 44 DKNIQLESRSPTENFLESVET 64 (337)
Q Consensus 44 ~~spD~~~Rk~AE~~L~~~~~ 64 (337)
+.|-=.++|+.|++..+.+..
T Consensus 24 D~sVPRNIRraa~ea~~~L~~ 44 (88)
T PRK04330 24 DTSVPRNIRRAATEAKEILLN 44 (88)
T ss_pred CCCCChHHHHHHHHHHHHHhC
Confidence 344445889999888777644
No 127
>KOG1058|consensus
Probab=26.75 E-value=8.8e+02 Score=26.62 Aligned_cols=74 Identities=8% Similarity=0.112 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHccC---CHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhhh
Q psy9795 114 SDREAIKGLILHLMLTS---PEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRYR 188 (337)
Q Consensus 114 e~K~~IK~~Ll~~L~~~---~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~yr 188 (337)
+.-..+|..+...-... ..+-|..|..+|...| .-||+-=.+.++.++..+++.|.......|.-+++.+++|.
T Consensus 352 div~~Lkke~~kT~~~e~d~~~~yRqlLiktih~ca-v~Fp~~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p 428 (948)
T KOG1058|consen 352 DIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACA-VKFPEVAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFP 428 (948)
T ss_pred HHHHHHHHHHHhccccccccchHHHHHHHHHHHHHh-hcChHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCc
Confidence 34455555555544331 1345667777776655 45887777899999999999999888999999999999874
No 128
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=25.48 E-value=8.5e+02 Score=29.47 Aligned_cols=102 Identities=12% Similarity=0.141 Sum_probs=66.6
Q ss_pred ChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHhhhCC---CCChHH
Q psy9795 82 DMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIKGLILHLMLT-SPEAIQKQLSDATAIIGKSDFP---DKWPSL 157 (337)
Q Consensus 82 ~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~~IK~~Ll~~L~~-~~~~Ir~ql~~~i~~Ia~~DfP---~~WPeL 157 (337)
+..++..|.-.||..-.+.-...+-. .. .-.|..+| -+...+.+ ....||..+.+|+..|...-.. ..|+..
T Consensus 1150 n~~va~fAidsLrQLs~kfle~eEL~--~f-~FQkefLk-Pfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktI 1225 (1780)
T PLN03076 1150 NLSIAIFAMDSLRQLSMKFLEREELA--NY-NFQNEFMK-PFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSM 1225 (1780)
T ss_pred chhHHHHHHHHHHHHHHHhcchhhhh--ch-hHHHHHHH-HHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHH
Confidence 35677777776766655543211100 00 11244554 33333433 3457999999999888754333 589999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHHHhhh
Q psy9795 158 ITDMVAKFGTGDFHIINGVLHTAHSLFKRY 187 (337)
Q Consensus 158 l~~L~~~l~s~d~~~~~~aL~~L~~i~k~y 187 (337)
+..+.......+...+..|..++..|+++|
T Consensus 1226 F~VLs~aa~d~~e~iV~lAFetl~~I~~d~ 1255 (1780)
T PLN03076 1226 FMVFTTAAYDDHKNIVLLAFEIIEKIIREY 1255 (1780)
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHHHHhh
Confidence 999998887778888999999999999875
No 129
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=25.36 E-value=3.9e+02 Score=25.63 Aligned_cols=80 Identities=10% Similarity=0.047 Sum_probs=54.5
Q ss_pred hhhheeeCCCchhHhhhccchhhHHHHHHhhcccCCCCChhhhHHHHHHHHHHHhC---CChHHHHHHHHHhCCCChHHH
Q psy9795 10 IEKFIVVDPTNQCLEDMCDRNGEFFCSTQGVPNHDKNIQLESRSPTENFLESVETN---QNYPLLILTLVERADVDMTIR 86 (337)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tL~~~~spD~~~Rk~AE~~L~~~~~~---pgf~~~Ll~i~~~~~~~~~iR 86 (337)
+|++++ |-...|.-+ +..++.+.|.+--+...+.-..+-+-|+.++.. .-|+.++-..+.+ .+.+|
T Consensus 121 ~e~~~l--pL~~~L~p~------l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl~ii~---sp~~R 189 (307)
T PF04118_consen 121 YEKYYL--PLGPALRPC------LKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDKYFWQCLWLCIIT---SPSRR 189 (307)
T ss_pred HHHHhc--CccHHHHHH------HHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChhHHHHHHHHHHhc---Ccchh
Confidence 577776 433344333 345666666555545567888888888887764 2488888877765 46899
Q ss_pred HHHHHHHhcccccc
Q psy9795 87 IAGAVAFKNYVKRN 100 (337)
Q Consensus 87 q~AaI~LKN~V~~~ 100 (337)
..|..|+.+...+.
T Consensus 190 l~al~~l~~~l~~~ 203 (307)
T PF04118_consen 190 LGALNYLLRRLPKF 203 (307)
T ss_pred HHHHHHHHHhCCcc
Confidence 99999998887664
No 130
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=25.14 E-value=6.7e+02 Score=24.74 Aligned_cols=115 Identities=16% Similarity=0.254 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHhh--hCCC--------------CChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhhhhhhhhhh
Q psy9795 132 EAIQKQLSDATAIIGKS--DFPD--------------KWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRYRHEFKSQK 195 (337)
Q Consensus 132 ~~Ir~ql~~~i~~Ia~~--DfP~--------------~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~yr~~~~s~~ 195 (337)
+.+....+..+..|..- ++.. -+..++|.+++...+.+.......|.+|..+++.--.
T Consensus 283 ~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~------ 356 (415)
T PF12460_consen 283 PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPK------ 356 (415)
T ss_pred hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCH------
Confidence 45666777777777654 3321 1456788888888776655667788888888885321
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHhhhccccCChHHHHHhHHHHHHHHHH
Q psy9795 196 LWTEIKFVLDNFAKPFTELFKATINLVGEHKDNPTALKVIYNSLVVSCKIFYSLNFQDLPEYFEDNMVVWMPALHN 271 (337)
Q Consensus 196 l~~el~~il~~~~~~L~~lf~~l~~~~~~~~~~~~~~~~~~e~l~lilKif~~~~~~~lp~~~e~~l~~W~~~f~~ 271 (337)
+ .++..+ ..++|-+++-+.. .+.. ++.-.+.++..+.... |+.+.+++..-+..+++
T Consensus 357 ---~--vl~~~l----~~LlPLLlqsL~~--~~~~-------v~~s~L~tL~~~l~~~-~~~i~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 357 ---S--VLLPEL----PTLLPLLLQSLSL--PDAD-------VLLSSLETLKMILEEA-PELISEHLSSLIPRLLK 413 (415)
T ss_pred ---H--HHHHHH----HHHHHHHHHHhCC--CCHH-------HHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHh
Confidence 1 112222 2344455554421 2222 2234444555544444 88888888877766654
No 131
>KOG1020|consensus
Probab=24.83 E-value=5.8e+02 Score=30.12 Aligned_cols=71 Identities=14% Similarity=0.161 Sum_probs=45.5
Q ss_pred CCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhhCC-CCChHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy9795 111 IHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFP-DKWPSLITDMVAKFGTGDFHIINGVLHTAHS 182 (337)
Q Consensus 111 i~~e~K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP-~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~ 182 (337)
++..-...+| .|+..+......+|+..-.|++.|+..|=- -.=|+.-..+.+.+..+.....++||..++.
T Consensus 810 f~~sfD~yLk-~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGr 881 (1692)
T KOG1020|consen 810 FSQSFDPYLK-LILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGR 881 (1692)
T ss_pred HHHhhHHHHH-HHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhh
Confidence 3333434443 566666665567777777777777777722 3557777777777766666666777776663
No 132
>KOG1943|consensus
Probab=24.73 E-value=1.1e+03 Score=26.92 Aligned_cols=128 Identities=14% Similarity=0.159 Sum_probs=79.9
Q ss_pred cCCCCChhhhHHHHHHHHHHHhC-CChHHHHHHHHHhCC-CChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHHHHH
Q psy9795 43 HDKNIQLESRSPTENFLESVETN-QNYPLLILTLVERAD-VDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIK 120 (337)
Q Consensus 43 ~~~spD~~~Rk~AE~~L~~~~~~-pgf~~~Ll~i~~~~~-~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~~IK 120 (337)
+-.+++-+.|++|-+.+.+.-+. ++|. .-..++++.+ .....|+-+--.+...|..+ ...+
T Consensus 479 AlFDrevncRRAAsAAlqE~VGR~~n~p-~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~----------------~~y~ 541 (1133)
T KOG1943|consen 479 ALFDREVNCRRAASAALQENVGRQGNFP-HGISLISTIDYFSVTNRSNCYLDLCVSIAEF----------------SGYR 541 (1133)
T ss_pred HhcCchhhHhHHHHHHHHHHhccCCCCC-CchhhhhhcchhhhhhhhhHHHHHhHHHHhh----------------hhHH
Confidence 34566679999999999876554 5442 1223333322 22344444444444444332 2234
Q ss_pred HHHHHHHcc-----CCHHHHHHHHHHHHHHHhhhCCCCC-hHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhhh
Q psy9795 121 GLILHLMLT-----SPEAIQKQLSDATAIIGKSDFPDKW-PSLITDMVAKFGTGDFHIINGVLHTAHSLFKRYR 188 (337)
Q Consensus 121 ~~Ll~~L~~-----~~~~Ir~ql~~~i~~Ia~~DfP~~W-PeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~yr 188 (337)
+-+++-+.. =+..+|.+.+.++..+.... |+.- ...++.++...-+.|....+|......++.-..+
T Consensus 542 ~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~-pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~ 614 (1133)
T KOG1943|consen 542 EPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTE-PKYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALR 614 (1133)
T ss_pred HHHHHHHHhcccccccHHHHHHHHHHHHHHHHhh-HHhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhh
Confidence 444444443 25789999999999977664 5433 2566777777778899999999999999887754
No 133
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=24.31 E-value=3.7e+02 Score=21.49 Aligned_cols=72 Identities=17% Similarity=0.147 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhHHHH
Q psy9795 135 QKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTG--DFHIINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFT 212 (337)
Q Consensus 135 r~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~--d~~~~~~aL~~L~~i~k~yr~~~~s~~l~~el~~il~~~~~~L~ 212 (337)
|++.-.+|..+.+.-- +.=....|++..++++. .++....|+.|.+.+++.... +++.+++++++..+.
T Consensus 32 k~~~i~ai~~lI~~~g-~~i~~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~L~~--------~~l~~ll~~~~~~i~ 102 (107)
T smart00802 32 KKRALRSIGFLIKLMG-KHISSALPQIMACLQSALEIPELRSLALRCWHVLIKTLKE--------EELGPLLDQIFAAIL 102 (107)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhCCH--------HHHHHHHHHHHHHHH
Confidence 3333444444444211 23446777888888774 555778999999999998632 356777887777554
Q ss_pred HHH
Q psy9795 213 ELF 215 (337)
Q Consensus 213 ~lf 215 (337)
+.|
T Consensus 103 ~~~ 105 (107)
T smart00802 103 PLW 105 (107)
T ss_pred Hhc
Confidence 433
No 134
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=24.05 E-value=4e+02 Score=22.00 Aligned_cols=42 Identities=17% Similarity=0.161 Sum_probs=32.7
Q ss_pred HHhhhCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhh
Q psy9795 145 IGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRY 187 (337)
Q Consensus 145 Ia~~DfP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~y 187 (337)
.++.+ +..=.+.+..|...+.+++++.+..||.+|..+++..
T Consensus 32 ~i~~~-~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNc 73 (140)
T PF00790_consen 32 LINSS-PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNC 73 (140)
T ss_dssp HHHTS-TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHS
T ss_pred HHHcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcC
Confidence 33443 3333578888888899999999999999999999975
No 135
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=23.79 E-value=4.3e+02 Score=26.26 Aligned_cols=56 Identities=13% Similarity=0.164 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHhhhCCC---CCh-HHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhhh
Q psy9795 133 AIQKQLSDATAIIGKSDFPD---KWP-SLITDMVAKFGTGDFHIINGVLHTAHSLFKRYR 188 (337)
Q Consensus 133 ~Ir~ql~~~i~~Ia~~DfP~---~WP-eLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~yr 188 (337)
.++-.....++-|...++.. ..+ .++..|+.++.|.|+..+.....+|+.+..++-
T Consensus 106 HL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~ 165 (409)
T PF01603_consen 106 HLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFP 165 (409)
T ss_dssp HHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-T
T ss_pred hHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhh
Confidence 34434444444555544432 354 899999999999999999999999999998863
No 136
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=23.69 E-value=2.7e+02 Score=22.96 Aligned_cols=36 Identities=14% Similarity=0.194 Sum_probs=30.6
Q ss_pred CCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhh
Q psy9795 152 DKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRY 187 (337)
Q Consensus 152 ~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~y 187 (337)
..-.++++.|...++..++....-+|++|..+|..-
T Consensus 34 ~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G 69 (122)
T cd03572 34 GSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKG 69 (122)
T ss_pred HHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhC
Confidence 556789999999999877666689999999999974
No 137
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=23.49 E-value=1.3e+02 Score=26.38 Aligned_cols=58 Identities=14% Similarity=0.064 Sum_probs=44.8
Q ss_pred cccCCCCChhhhHHHHHHHHHHHh----CC-ChHHHHHHHHHhCCCChHHHHHHHHHHhcccccc
Q psy9795 41 PNHDKNIQLESRSPTENFLESVET----NQ-NYPLLILTLVERADVDMTIRIAGAVAFKNYVKRN 100 (337)
Q Consensus 41 L~~~~spD~~~Rk~AE~~L~~~~~----~p-gf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~ 100 (337)
|+-..++|..+|..|=+-++..-+ +| ..+.+|..+.++ .+..+|..|.-.+|..-.+|
T Consensus 14 l~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts--~~~~ir~~A~~~l~~l~eK~ 76 (187)
T PF12830_consen 14 LELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETS--PNPSIRSRAYQLLKELHEKH 76 (187)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCC--CChHHHHHHHHHHHHHHHHh
Confidence 445566777999999998887665 46 467777776665 37899999999999888776
No 138
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=23.38 E-value=5.6e+02 Score=23.19 Aligned_cols=52 Identities=15% Similarity=0.037 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHhhhCCCCChHHHHHHHHhh-CCCCHHHHHHHHHHHHHHHhh
Q psy9795 134 IQKQLSDATAIIGKSDFPDKWPSLITDMVAKF-GTGDFHIINGVLHTAHSLFKR 186 (337)
Q Consensus 134 Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l-~s~d~~~~~~aL~~L~~i~k~ 186 (337)
..-.++.++..|+..+ |++|+++++.|.+.+ ++++....-.|+..+..+|+.
T Consensus 100 ~~i~~a~s~~~ic~~~-p~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~ 152 (234)
T PF12530_consen 100 CLISIAASIRDICCSR-PDHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEA 152 (234)
T ss_pred HHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 3445567889999887 789999999999999 677777888899999999954
No 139
>KOG0267|consensus
Probab=22.98 E-value=2.2e+02 Score=30.58 Aligned_cols=71 Identities=18% Similarity=0.110 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhh
Q psy9795 117 EAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRY 187 (337)
Q Consensus 117 ~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~y 187 (337)
.-||..|-....-++..++.-+-.++..++..---+-...|+|.|-.++.+.-...+..+|..|-+++..|
T Consensus 675 ~DiK~sI~s~~kl~D~sV~ADvL~Iltek~eiLtLDl~t~l~P~lt~LLgS~~e~~v~vsld~Llklv~~f 745 (825)
T KOG0267|consen 675 SDIKGSIGSLRKLADNSVQADVLNILTEKIEILTLDLCTQLLPVLTALLGSKTERPVNVSLDMLLKLVAVF 745 (825)
T ss_pred hhhhHHHHHHHHhhhhhHHHHHHHHHhhhhhHhhHHHHHHHHHHHHHHhcccchhhhhhHHHHHHHHHHHh
Confidence 34666666666556777776666666665554333456788999999998886667777888777777766
No 140
>PF03685 UPF0147: Uncharacterised protein family (UPF0147); InterPro: IPR005354 The proteins in this entry are functionally uncharacterised.; PDB: 2QZG_C 2QSB_A.
Probab=22.57 E-value=1.6e+02 Score=22.72 Aligned_cols=21 Identities=19% Similarity=0.256 Sum_probs=12.9
Q ss_pred CCCCChhhhHHHHHHHHHHHh
Q psy9795 44 DKNIQLESRSPTENFLESVET 64 (337)
Q Consensus 44 ~~spD~~~Rk~AE~~L~~~~~ 64 (337)
+.|-=.++|+.|++..+.+..
T Consensus 21 D~sVPRNIRr~a~ea~~~L~~ 41 (85)
T PF03685_consen 21 DTSVPRNIRRAAEEAKEILNN 41 (85)
T ss_dssp -TTS-HHHHHHHHHHHHHCT-
T ss_pred CCCCChHHHHHHHHHHHHHhC
Confidence 333444788888888777654
No 141
>PF10540 Membr_traf_MHD: Munc13 (mammalian uncoordinated) homology domain; InterPro: IPR019558 Mammalian uncoordinated homology 13 (Munc13) proteins constitute a family of three highly homologous molecules (Munc13-1, Munc13-2 and Munc13-3) with homology to Caenorhabditis elegans unc-13p. Munc13 proteins contain a phorbol ester-binding C1 domain and two C2 domains, which are Ca2+/phospholipid binding domains. Sequence analyses have uncovered two regions called Munc13 homology domains 1 (MHD1) and 2 (MHD2) that are arranged between two flanking C2 domains. MHD1 and MHD2 domains are present in a wide variety of proteins from Arabidopsis thaliana (Mouse-ear cress), C. elegans, Drosophila melanogaster (Fruit fly), Mus musculus (Mouse), Rattus norvegicus (Rat) and Homo sapiens (Human), some of which may function in a Munc13-like manner to regulate membrane trafficking. The MHD1 and MHD2 domains are predicted to be alpha-helical. ; PDB: 3SWH_A.
Probab=22.50 E-value=3.8e+02 Score=22.32 Aligned_cols=10 Identities=10% Similarity=-0.227 Sum_probs=4.4
Q ss_pred ccchhHHH-hh
Q psy9795 293 FISDVETR-RR 302 (337)
Q Consensus 293 ~~~~~~~~-k~ 302 (337)
-|.+++++ |+
T Consensus 103 ~Gl~~~~L~ks 113 (137)
T PF10540_consen 103 NGLPLEFLEKS 113 (137)
T ss_dssp TS--HHHHHC-
T ss_pred CCCCHHHHccC
Confidence 36666777 54
No 142
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=22.29 E-value=3.4e+02 Score=21.88 Aligned_cols=46 Identities=11% Similarity=0.177 Sum_probs=35.1
Q ss_pred HHHHHHhhhCC-CCChHHHHHHHHhh---CCCCHHHHHHHHHHHHHHHhh
Q psy9795 141 ATAIIGKSDFP-DKWPSLITDMVAKF---GTGDFHIINGVLHTAHSLFKR 186 (337)
Q Consensus 141 ~i~~Ia~~DfP-~~WPeLl~~L~~~l---~s~d~~~~~~aL~~L~~i~k~ 186 (337)
.+..|+..-|- ...+.++..|...+ ...+...++-+|.+|..+++.
T Consensus 23 ~l~eIa~~t~~~~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~n 72 (125)
T PF01417_consen 23 LLAEIAQLTYNSKDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKN 72 (125)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHH
Confidence 34566655544 56778899999988 445778899999999999996
No 143
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=21.68 E-value=7.1e+02 Score=23.77 Aligned_cols=58 Identities=16% Similarity=0.196 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHhhhCC-------CCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhhhh
Q psy9795 132 EAIQKQLSDATAIIGKSDFP-------DKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRYRH 189 (337)
Q Consensus 132 ~~Ir~ql~~~i~~Ia~~DfP-------~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~yr~ 189 (337)
+..|..+-..++.|..+-|+ +.+..+++.++-.+++.+.+....||.++..+++....
T Consensus 134 Pe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 134 PEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 67888888888877776443 45677888888888888999999999999999998743
No 144
>PF14675 FANCI_S1: FANCI solenoid 1; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=21.48 E-value=6.3e+02 Score=23.06 Aligned_cols=36 Identities=14% Similarity=0.243 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHhhhCC-CCChHHHHHHHHhhCCC
Q psy9795 133 AIQKQLSDATAIIGKSDFP-DKWPSLITDMVAKFGTG 168 (337)
Q Consensus 133 ~Ir~ql~~~i~~Ia~~DfP-~~WPeLl~~L~~~l~s~ 168 (337)
.+..-...++..|-.-+-. ..|-+|+|.++..+++.
T Consensus 44 ~Lv~l~~~~v~~i~~g~~~~~~~ldLlP~~Ls~L~~~ 80 (223)
T PF14675_consen 44 HLVELAELCVDSIRSGDNKNGKWLDLLPKCLSALSAS 80 (223)
T ss_dssp HHHHHHHHHHHHHHS---S-STTTTHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHhcC
Confidence 3444444445444332222 58999999999998654
No 145
>PF05536 Neurochondrin: Neurochondrin
Probab=21.47 E-value=7.6e+02 Score=25.67 Aligned_cols=108 Identities=13% Similarity=0.115 Sum_probs=65.6
Q ss_pred hHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHhcccCCChhHHHH
Q psy9795 155 PSLITDMVAKFGTGDFHIINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFTELFKATINLVGEHKDNPTALKV 234 (337)
Q Consensus 155 PeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~yr~~~~s~~l~~el~~il~~~~~~L~~lf~~l~~~~~~~~~~~~~~~~ 234 (337)
++-+.+.+.++++.+..+...||..+.++++. ++......+.|.+.+.+. .+..++.-...+.+.+
T Consensus 4 ~~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~------~~~~~~~~~~v~~aig~~---Fl~RLL~t~~~~~~~~----- 69 (543)
T PF05536_consen 4 SASLEKCLSLLKSADDTERFAGLLLVTKLLDA------DDEDSQTRRRVFEAIGFK---FLDRLLRTGSVPSDCP----- 69 (543)
T ss_pred hHHHHHHHHHhccCCcHHHHHHHHHHHHcCCC------chhhHHHHHHHHHhcChh---HHHHHhcCCCCCCCCC-----
Confidence 45678889999998877899999999999995 333222333566666663 3344444211111111
Q ss_pred HHHHHHHHHHHhhhccccCChHHH-HHhHHHHHHHHHHhhccCCC
Q psy9795 235 IYNSLVVSCKIFYSLNFQDLPEYF-EDNMVVWMPALHNLLVTDVP 278 (337)
Q Consensus 235 ~~e~l~lilKif~~~~~~~lp~~~-e~~l~~W~~~f~~iL~~~~p 278 (337)
.-.++.+.+.|.+.... .|+.- .+.+..-...+..++.....
T Consensus 70 ~~~~~~LavsvL~~f~~--~~~~a~~~~~~~~IP~Lle~l~~~s~ 112 (543)
T PF05536_consen 70 PEEYLSLAVSVLAAFCR--DPELASSPQMVSRIPLLLEILSSSSD 112 (543)
T ss_pred HHHHHHHHHHHHHHHcC--ChhhhcCHHHHHHHHHHHHHHHcCCc
Confidence 23445677777776655 34433 35666666777777766554
No 146
>KOG1020|consensus
Probab=21.32 E-value=9.9e+02 Score=28.34 Aligned_cols=35 Identities=6% Similarity=0.196 Sum_probs=19.5
Q ss_pred CCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhh
Q psy9795 152 DKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKR 186 (337)
Q Consensus 152 ~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~ 186 (337)
..+...+..|+..+..+.+..+-.||+||+.|++.
T Consensus 812 ~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~ 846 (1692)
T KOG1020|consen 812 QSFDPYLKLILSVLGENAIALRTKALKCLSMIVEA 846 (1692)
T ss_pred HhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhc
Confidence 44555555555555555555555566666655544
No 147
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=21.19 E-value=8.6e+02 Score=24.55 Aligned_cols=121 Identities=11% Similarity=0.073 Sum_probs=69.1
Q ss_pred CChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHH--HHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q psy9795 66 QNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHAS--DREAIKGLILHLMLTSPEAIQKQLSDATA 143 (337)
Q Consensus 66 pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e--~K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~ 143 (337)
|.|...++.++.+.. ...+.+...+.+=-.+...=... ..+.+. .+...=...+..|.+.+..|....+.+++
T Consensus 52 ~~y~~~~l~ll~~~~-~~d~vqyvL~Li~dll~~~~~~~----~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt 126 (429)
T cd00256 52 GQYVKTFVNLLSQID-KDDTVRYVLTLIDDMLQEDDTRV----KLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILA 126 (429)
T ss_pred HHHHHHHHHHHhccC-cHHHHHHHHHHHHHHHHhchHHH----HHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHH
Confidence 678888888877644 56666666665555444310000 000000 00011123444555667789999999999
Q ss_pred HHHhhhCCCCChH----HHHHHHHhhCCC-CHHHHHHHHHHHHHHHhh--hhhhh
Q psy9795 144 IIGKSDFPDKWPS----LITDMVAKFGTG-DFHIINGVLHTAHSLFKR--YRHEF 191 (337)
Q Consensus 144 ~Ia~~DfP~~WPe----Ll~~L~~~l~s~-d~~~~~~aL~~L~~i~k~--yr~~~ 191 (337)
.++.+.--..=.. +++.+...++++ +...+..|+.||..+++. ||..+
T Consensus 127 ~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f 181 (429)
T cd00256 127 KLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAF 181 (429)
T ss_pred HHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHH
Confidence 9987642211122 444555555554 467788999999998765 55433
No 148
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=21.13 E-value=7e+02 Score=23.46 Aligned_cols=128 Identities=13% Similarity=0.062 Sum_probs=71.8
Q ss_pred ChhhhHHHHHHHHHHH-----------hCCChHHHHHHHHHhC-------C--CChHHHHHHHHHHhccccccCcccCCC
Q psy9795 48 QLESRSPTENFLESVE-----------TNQNYPLLILTLVERA-------D--VDMTIRIAGAVAFKNYVKRNWPLVEDE 107 (337)
Q Consensus 48 D~~~Rk~AE~~L~~~~-----------~~pgf~~~Ll~i~~~~-------~--~~~~iRq~AaI~LKN~V~~~W~~~~~~ 107 (337)
+++.|..|=..|-.-. ..+|-...||+-+.+- . ....-|.-.++.|=..|..|=.
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpe----- 82 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPE----- 82 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TT-----
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChH-----
Confidence 4466777766664321 1456666677655431 1 1224566666666666665532
Q ss_pred CCCCCHHHHHHHHHH----HHHHHccCC-----HHHHHHHHHHHHHHHhhhCCC-----CChHHHHHHHHhhCCCCHHHH
Q psy9795 108 PDKIHASDREAIKGL----ILHLMLTSP-----EAIQKQLSDATAIIGKSDFPD-----KWPSLITDMVAKFGTGDFHII 173 (337)
Q Consensus 108 ~~~i~~e~K~~IK~~----Ll~~L~~~~-----~~Ir~ql~~~i~~Ia~~DfP~-----~WPeLl~~L~~~l~s~d~~~~ 173 (337)
--+..++.+ |+..|..++ ..+|-..--+|+.+++.|=++ -..|++|-.+..+..++.-..
T Consensus 83 ------tr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSK 156 (262)
T PF04078_consen 83 ------TRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSK 156 (262)
T ss_dssp ------THHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHH
T ss_pred ------HHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHH
Confidence 222344443 334443322 356767777788888776543 245788888888888876666
Q ss_pred HHHHHHHHHHHhh
Q psy9795 174 NGVLHTAHSLFKR 186 (337)
Q Consensus 174 ~~aL~~L~~i~k~ 186 (337)
-.|..++..|.-+
T Consensus 157 tvAtfIlqKIL~d 169 (262)
T PF04078_consen 157 TVATFILQKILLD 169 (262)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcc
Confidence 7777778777765
No 149
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=20.69 E-value=7e+02 Score=23.31 Aligned_cols=73 Identities=12% Similarity=0.079 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhhhhh
Q psy9795 117 EAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRYRHE 190 (337)
Q Consensus 117 ~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~yr~~ 190 (337)
..+.+-++.++.+.+..||..--.|++..+-.|- +-=.+.++.+.+.++.++......|+.++-.+.-.|-..
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~-~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~ 98 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK-ELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGID 98 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCch
Confidence 5666677788888889999999999999998874 223467778888887777788889999999999988554
No 150
>KOG4224|consensus
Probab=20.65 E-value=3.7e+02 Score=26.89 Aligned_cols=130 Identities=9% Similarity=0.079 Sum_probs=79.3
Q ss_pred CCCChhhhHHHHHHHHHHHh---------CCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHH
Q psy9795 45 KNIQLESRSPTENFLESVET---------NQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASD 115 (337)
Q Consensus 45 ~spD~~~Rk~AE~~L~~~~~---------~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~ 115 (337)
.|-|-.+|+.|...|-.+.. ..|-+..|...+.+. +..+|.-|...+-|.-..+-..+ .+.+.+
T Consensus 177 kskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~--d~dvqyycttaisnIaVd~~~Rk-----~Laqae 249 (550)
T KOG4224|consen 177 KSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSG--DLDVQYYCTTAISNIAVDRRARK-----ILAQAE 249 (550)
T ss_pred ccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccC--ChhHHHHHHHHhhhhhhhHHHHH-----HHHhcc
Confidence 34455677777776654432 357777788877764 56777777766665532211100 121111
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhh-C--CCCChHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy9795 116 REAIKGLILHLMLTSPEAIQKQLSDATAIIGKSD-F--PDKWPSLITDMVAKFGTGDFHIINGVLHTAHS 182 (337)
Q Consensus 116 K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~D-f--P~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~ 182 (337)
..+-..|++.+-+.+++++-|.+.++..|+... | |-.=..=+|.++.+++++-...+.....|++.
T Consensus 250 -p~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrn 318 (550)
T KOG4224|consen 250 -PKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRN 318 (550)
T ss_pred -cchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhh
Confidence 234457888888888999999999999998642 2 11112346777888888755556666666643
No 151
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=20.45 E-value=2.6e+02 Score=28.81 Aligned_cols=32 Identities=19% Similarity=0.272 Sum_probs=16.5
Q ss_pred CChHHHHHHHHH-hCCCChHHHHHHHHHHhccc
Q psy9795 66 QNYPLLILTLVE-RADVDMTIRIAGAVAFKNYV 97 (337)
Q Consensus 66 pgf~~~Ll~i~~-~~~~~~~iRq~AaI~LKN~V 97 (337)
|.-...|..++. +...+..+|.+|.-.||+..
T Consensus 476 ~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a 508 (574)
T smart00638 476 PSSIKVLEPYLEGAEPLSTFIRLAAILALRNLA 508 (574)
T ss_pred hhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHH
Confidence 444445554444 33345566666666666443
No 152
>KOG2259|consensus
Probab=20.39 E-value=1.1e+03 Score=25.48 Aligned_cols=50 Identities=16% Similarity=0.122 Sum_probs=39.0
Q ss_pred hhhHHHHHHHHHHHh-CCChHHHHHHHHHhCC--CChHHHHHHHHHHhccccc
Q psy9795 50 ESRSPTENFLESVET-NQNYPLLILTLVERAD--VDMTIRIAGAVAFKNYVKR 99 (337)
Q Consensus 50 ~~Rk~AE~~L~~~~~-~pgf~~~Ll~i~~~~~--~~~~iRq~AaI~LKN~V~~ 99 (337)
++|++|=..+-.+.. .|+|....++.+.+.= ....||.-|.-+|+....+
T Consensus 388 EVR~AAV~Sl~~La~ssP~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~ 440 (823)
T KOG2259|consen 388 EVRRAAVASLCSLATSSPGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVH 440 (823)
T ss_pred HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 789999888877655 7999999888887632 2468999998888876554
No 153
>KOG1240|consensus
Probab=20.23 E-value=2e+02 Score=32.90 Aligned_cols=31 Identities=19% Similarity=0.204 Sum_probs=26.6
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHHHhh
Q psy9795 156 SLITDMVAKFGTGDFHIINGVLHTAHSLFKR 186 (337)
Q Consensus 156 eLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~ 186 (337)
-++|-|.|.++.+....+..||.||+.+||-
T Consensus 656 yllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~ 686 (1431)
T KOG1240|consen 656 YLLPLLQQGLTDGEEAVIVSALGSLSILIKL 686 (1431)
T ss_pred HHHHHHHHhccCcchhhHHHHHHHHHHHHHh
Confidence 4778888888888888899999999999996
No 154
>KOG2798|consensus
Probab=20.22 E-value=6e+02 Score=24.86 Aligned_cols=89 Identities=8% Similarity=0.062 Sum_probs=42.4
Q ss_pred HHHHHHhccccccCcccCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhhCCCCChH-HHHHHHHhhC
Q psy9795 88 AGAVAFKNYVKRNWPLVEDEPDKIHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPS-LITDMVAKFG 166 (337)
Q Consensus 88 ~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~WPe-Ll~~L~~~l~ 166 (337)
-|.-.+++..+.-| .+|.+.+..+. +...-|......|+ .-+.++..||... |....+ +... ..+-
T Consensus 32 ya~~~l~~~~~~~n--------~~s~d~q~~l~-~f~k~l~n~k~~I~-~N~~v~r~Ia~~~-~~~f~ed~~~~--~~~~ 98 (369)
T KOG2798|consen 32 YANELLFRRRRQLN--------GISEDHQQLLG-NFTKHLKNNKGCIE-ENSRVIRAIAEEC-PFEFTEDHDQK--GELA 98 (369)
T ss_pred hHHHHHHHHHHHhc--------CCCHHHHHHHH-HHHHHHHhhHHHHH-hhhHHHHHHHhhC-ccccchhhhcc--ccee
Confidence 34445555555556 36665554444 44444433222221 2233444444422 222211 2111 1122
Q ss_pred CCCHHHHHHHHHHHHHHHhhhhh
Q psy9795 167 TGDFHIINGVLHTAHSLFKRYRH 189 (337)
Q Consensus 167 s~d~~~~~~aL~~L~~i~k~yr~ 189 (337)
..++.-+.-+-.+|.+||+++..
T Consensus 99 ~~n~~~m~kv~s~l~~i~Rdwss 121 (369)
T KOG2798|consen 99 QVNPDFMSKVSSTLKQICRDWSS 121 (369)
T ss_pred cCCHHHHHHHHHHHHHHHHHhhh
Confidence 23555566677799999999843
No 155
>KOG2025|consensus
Probab=20.14 E-value=1.1e+03 Score=25.59 Aligned_cols=140 Identities=12% Similarity=0.064 Sum_probs=83.8
Q ss_pred hHHHHHHhhcccCCCCChh--hhHHHHHHHHHHHhC---CChHHHHHHHHHh--CCCChHHHHHHHHHHhccccccCccc
Q psy9795 32 EFFCSTQGVPNHDKNIQLE--SRSPTENFLESVETN---QNYPLLILTLVER--ADVDMTIRIAGAVAFKNYVKRNWPLV 104 (337)
Q Consensus 32 ~~~~~l~~tL~~~~spD~~--~Rk~AE~~L~~~~~~---pgf~~~Ll~i~~~--~~~~~~iRq~AaI~LKN~V~~~W~~~ 104 (337)
+|...+.-++---..+... +.+-+-...+.+.+- .+++..++..+.. ...+..||.-....+...+...
T Consensus 41 eflr~vn~il~vkKresi~dRIl~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~---- 116 (892)
T KOG2025|consen 41 EFLRVVNYILLVKKRESIPDRILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDEN---- 116 (892)
T ss_pred HHHHHHHHheeeccCCCcHHHHHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccc----
Confidence 4555655444433222211 223334444444442 2455555443332 1246788887777776655421
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCC-CHHHHHHHHHHH
Q psy9795 105 EDEPDKIHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTG-DFHIINGVLHTA 180 (337)
Q Consensus 105 ~~~~~~i~~e~K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~-d~~~~~~aL~~L 180 (337)
..++++.=+.+...++.-+.+-.+.||.|...+++..-..+--++.| ....+...++++ ++.....+|.++
T Consensus 117 ----~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~~-v~n~l~~liqnDpS~EVRRaaLsnI 188 (892)
T KOG2025|consen 117 ----AEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEECP-VVNLLKDLIQNDPSDEVRRAALSNI 188 (892)
T ss_pred ----cccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCccc-HHHHHHHHHhcCCcHHHHHHHHHhh
Confidence 37889988999999999999888999999999988887544334555 555555556554 555556666554
Done!