RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9795
(337 letters)
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear
transport, exportin, RAN GTPase, protein transport; HET:
GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1
PDB: 1z3h_A
Length = 960
Score = 189 bits (480), Expect = 5e-54
Identities = 88/270 (32%), Positives = 147/270 (54%), Gaps = 6/270 (2%)
Query: 50 ESRSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPD 109
+ +E L +ET + L +L ++ ++ ++ R+AGA+ FKN++KR W E+
Sbjct: 18 STAKTSERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWV-DENGNH 76
Query: 110 KIHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGD 169
+ A++ E IK I+ LM++ P +Q Q+ +A + I SDFPD+WP+L++D+ ++ D
Sbjct: 77 LLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDD 136
Query: 170 FHIINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFTELFKATINLVGEHKDNP 229
GVL AHS+FKR+R F+S +L+ EIK VLD F PF L K + +++N
Sbjct: 137 MVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNK 196
Query: 230 TALKVIYNSLVVSCKIFYSLNFQDLPEYFEDNMVVWMPALHNLLVTDVPCLRTDSIFVNS 289
+L ++++ L+V K++Y N QD+PE+FEDN+ V M H L P L
Sbjct: 197 ASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDE---- 252
Query: 290 FRRFISDVETRRRAACDFVKILCKYMEDKM 319
S + + + + V++ ED
Sbjct: 253 -TEHASVLIKVKSSIQELVQLYTTRYEDVF 281
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein
transport importin, transportin, transport protein;
2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A
2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Length = 852
Score = 105 bits (263), Expect = 3e-25
Identities = 37/293 (12%), Positives = 84/293 (28%), Gaps = 29/293 (9%)
Query: 50 ESRSPTENFLESVETNQNY-PLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEP 108
+ + LE + ++ LI L + D R + KN VK ++
Sbjct: 28 TIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHF------- 80
Query: 109 DKIHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTG 168
+ IK L+ + S I+ + I WP L+ + + +
Sbjct: 81 QNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSE 140
Query: 169 DFHIINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFTELF----KATINLVGE 224
D++ G + + S L + ++ F + F + V +
Sbjct: 141 DYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQ 200
Query: 225 -HKDNPTALKVIYNSLV-------------VSCKIFYSLN--FQDLPEYFEDNMVVWMPA 268
AL + +S + V + +L + + +M +
Sbjct: 201 FIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEY 260
Query: 269 LHNLLVTDVPCLRTDSI-FVNSFRRFISDVETRRRAACDFVKILCKYMEDKMM 320
+ + ++ F + + R + +L M+ +
Sbjct: 261 MLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDI 313
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear
transport receptor, cell cycle, translation; HET: GNP;
2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A
1f59_A 1o6o_A 1o6p_A
Length = 462
Score = 83.7 bits (206), Expect = 5e-18
Identities = 51/302 (16%), Positives = 99/302 (32%), Gaps = 23/302 (7%)
Query: 50 ESRSPTENFLESVETNQNYPLLILTLVE---RADVDMTIRIAGAVAFKNYVKRNWPLVED 106
+ FLE +N P ++ L R+A + KN + P ++
Sbjct: 16 LELEAAQKFLER-AAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKA 74
Query: 107 EPDK----IHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFP-DKWPSLITDM 161
+ + I A+ R +K +L L + S A I ++ P ++WP LI +
Sbjct: 75 QYQQRWLAIDANARREVKNYVLQT-LGTETYRPSSASQCVAGIACAEIPVNQWPELIPQL 133
Query: 162 VAKFGTGDF--HIINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFTEL----- 214
VA + H+ L + + E K + ++ K
Sbjct: 134 VANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLA 193
Query: 215 -FKATINLVGEHKDNPTALKVIYNSLVVSCKIFYSLNFQDLPEYFEDNMVVWMPALHNLL 273
A +N + K N + + V C+ + + + N+V M + +
Sbjct: 194 ATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQ-NLVKIMSLYYQYM 252
Query: 274 VTDVPCLRTDSIFVNSFRRFISDVETRRRAACDFVKILCKYMEDKMMGTSTAGAKDLFPP 333
T + ++F + SD++ +F +C D + S A + P
Sbjct: 253 ETYMG----PALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPE 308
Query: 334 IP 335
Sbjct: 309 HT 310
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear
import, heat motif, NLS-binding; 2.30A {Homo sapiens}
SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A
2qna_A
Length = 876
Score = 81.8 bits (201), Expect = 3e-17
Identities = 50/305 (16%), Positives = 95/305 (31%), Gaps = 29/305 (9%)
Query: 50 ESRSPTENFLESVETNQNYPLLILTLVE---RADVDMTIRIAGAVAFKNYVKRNWPLVED 106
+ FLE +N P ++ L R+A + KN + P ++
Sbjct: 16 LELEAAQKFLER-AAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKA 74
Query: 107 EPD----KIHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPD-KWPSLITDM 161
+ I A+ R +K +LH L + S A I ++ P +WP LI +
Sbjct: 75 QYQQRWLAIDANARREVKNYVLHT-LGTETYRPSSASQCVAGIACAEIPVNQWPELIPQL 133
Query: 162 VAKFGTGD--FHIINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFTEL----- 214
VA + H+ L + + E K + ++ K
Sbjct: 134 VANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLA 193
Query: 215 -FKATINLVGEHKDNPTALKVIYNSLVVSCKIFYSLNFQDLPEYFEDNMVVWMPALHNLL 273
A +N + K N + + V C+ + + + L ++
Sbjct: 194 ATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQ--------NLVKIM 245
Query: 274 VTDVPCLRT---DSIFVNSFRRFISDVETRRRAACDFVKILCKYMEDKMMGTSTAGAKDL 330
+ T ++F + SD++ +F +C D + S A +
Sbjct: 246 SLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGR 305
Query: 331 FPPIP 335
P
Sbjct: 306 PPEHT 310
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic
transport, nuclear trafficking, importin- beta, complex;
1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB:
2bku_B 3ea5_B* 3nd2_A
Length = 861
Score = 77.5 bits (190), Expect = 7e-16
Identities = 34/293 (11%), Positives = 85/293 (29%), Gaps = 32/293 (10%)
Query: 50 ESRSPTENFLESVETNQNYPLLILTLVE---RADVDMTIRIAGAVAFKNYVKRNWPLVED 106
R +E L+ + N N+ + + + RI A+ KN + +
Sbjct: 20 NIRLTSETQLKKLS-NDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQ 78
Query: 107 EP-----DKIHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPD-KWPSLITD 160
+ ++ + IK L +++ I + A I + P WP L+
Sbjct: 79 QFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKI 138
Query: 161 MVAKFGTGDF-HIINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFTELFKATI 219
MV G ++ L + + + + ++ + + +
Sbjct: 139 MVDNTGAEQPENVKRASLLALGYMC---------ESADPQSQALVSSSNNILIAIVQGAQ 189
Query: 220 NLVGEHKDNPTALKVIYNSLVVSCKIFYSLNFQD-----LPEYFEDNM----VVWMPALH 270
+ AL + +SL+ ++ + E + L
Sbjct: 190 STETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLC 249
Query: 271 NLLVTDVPCLR---TDSIFVNSFRRFISDVETRRRAACDFVKILCKYMEDKMM 320
++ ++ +++ + S + +F +C+ D
Sbjct: 250 KIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAY 302
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding,
acetylation, GTP-binding, HOST-virus interaction,
nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus
musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Length = 1073
Score = 59.1 bits (142), Expect = 9e-10
Identities = 29/197 (14%), Positives = 67/197 (34%), Gaps = 19/197 (9%)
Query: 50 ESRSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPD 109
+ + L ++ + + + T++E +M + G +N +K W ++
Sbjct: 43 AQQRMAQEVLTHLKEHPDAWTRVDTILEF-SQNMNTKYYGLQILENVIKTRWKILPRN-- 99
Query: 110 KIHASDREAIKGLILHLM---------LTSPEAIQKQLSDATAIIGKSDFPDKWPSLITD 160
E IK ++ L+ + + +L+ I K ++P WP+ I+D
Sbjct: 100 -----QCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPTFISD 154
Query: 161 MVAKFGTGDFHIING--VLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFTELFKAT 218
+V T + N +L + +Q +K + N +L +
Sbjct: 155 IVGASRTSESLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFV 214
Query: 219 INLVGEHKDNPTALKVI 235
+ L+ +
Sbjct: 215 MENSQNAPLVHATLETL 231
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.4 bits (81), Expect = 0.032
Identities = 45/274 (16%), Positives = 89/274 (32%), Gaps = 95/274 (34%)
Query: 55 TENFL-ESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVE--DEPDKI 111
T+++ E + Q Y +L+ L++ + ++ I + + + ++E + P
Sbjct: 166 TDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNT 225
Query: 112 HASDREA--------IKGLI--LHLMLT------SPEAIQKQLSDAT---------AIIG 146
D I G+I H ++T +P ++ L AT I
Sbjct: 226 PDKDYLLSIPISCPLI-GVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIA 284
Query: 147 KSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDN 206
++ D W S V K T F I GV + +
Sbjct: 285 ET---DSWESFF-VSVRKAITVLFFI--GV---------------RCYE----------- 312
Query: 207 FAKPFTELFKATINLVGEHKDN----PTALKVIYNSLVVSCKIFYSLNFQDLPEYFED-N 261
A P T L +++ + +N P+ + L +S +L + + +Y N
Sbjct: 313 -AYPNTSL---PPSILEDSLENNEGVPSPM------LSIS-----NLTQEQVQDYVNKTN 357
Query: 262 MVVWMPALHNLLVTDVPCLRTDSI-FVNSFRRFI 294
+ +P + I VN + +
Sbjct: 358 -------------SHLPAGKQVEISLVNGAKNLV 378
Score = 33.5 bits (76), Expect = 0.11
Identities = 31/171 (18%), Positives = 56/171 (32%), Gaps = 38/171 (22%)
Query: 3 FQISALAIEKFIVVDPTNQCLEDMCDRNGEFFCSTQGVPNHDKNIQLESRSPTENFLESV 62
F I E + LED N E GVP+ L + T+ ++
Sbjct: 304 FFIGVRCYEAYPNTSLPPSILED-SLENNE------GVPSP----MLSISNLTQEQVQDY 352
Query: 63 --ETNQNYPL---LILTLV--ERADVDMTIRIAGA----VAFKNYVKRNWPLVEDEPDKI 111
+TN + P + ++LV + V ++G +++ + +I
Sbjct: 353 VNKTNSHLPAGKQVEISLVNGAKNLV-----VSGPPQSLYGLNLTLRKAKAPSGLDQSRI 407
Query: 112 HASDRE-AIKGLIL--------HLMLTSPEAIQKQLSDATAIIGKSD--FP 151
S+R+ L HL++ + + I K L D P
Sbjct: 408 PFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP 458
Score = 30.4 bits (68), Expect = 1.1
Identities = 41/242 (16%), Positives = 75/242 (30%), Gaps = 76/242 (31%)
Query: 31 GEFFCSTQGVPNHDKNI---QLESRSPT-ENFLES------------VETNQNYPLLILT 74
GE +G H + + + + + E+F S V + YP L
Sbjct: 261 GELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLP 320
Query: 75 LVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPD---KIHASDREAIKGLILHLMLTSP 131
D ++ N E P I +E ++ + P
Sbjct: 321 PSILED---------------SLENN----EGVPSPMLSISNLTQEQVQDYVNKTNSHLP 361
Query: 132 EAIQKQLSDATAIIGKSDFPDKWPSLI---TDMVAKFGTG---DFHIINGVLH--TAHSL 183
KQ+ I SL+ ++V +G + +N L A S
Sbjct: 362 AG--KQVE----I-----------SLVNGAKNLVV---SGPPQSLYGLNLTLRKAKAPSG 401
Query: 184 FKRYRHEFKSQKLWTEIKFVLDNFAKPF-TELFKATINLVGEHKD------NPTALKV-I 235
+ R F +KL +F L + PF + L +L+ + N +++ +
Sbjct: 402 LDQSRIPFSERKLKFSNRF-LPVAS-PFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPV 459
Query: 236 YN 237
Y+
Sbjct: 460 YD 461
Score = 30.0 bits (67), Expect = 1.5
Identities = 14/74 (18%), Positives = 31/74 (41%), Gaps = 15/74 (20%)
Query: 187 YRHEFKSQKLWTEIKFVLDNFAKPFTELFKATI-NLVGEHKDNPTALKVIYNSLVVSCKI 245
Y+ +Q +W DN F + + +I ++V +NP L I+ +I
Sbjct: 1636 YKTSKAAQDVWNRA----DNH---FKDTYGFSILDIV---INNPVNL-TIHFGGEKGKRI 1684
Query: 246 ---FYSLNFQDLPE 256
+ ++ F+ + +
Sbjct: 1685 RENYSAMIFETIVD 1698
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.56
Identities = 8/30 (26%), Positives = 16/30 (53%), Gaps = 5/30 (16%)
Query: 115 DREAIKGLILHLMLTSPEAIQKQLSDATAI 144
+++A+K L L L + ++ + A AI
Sbjct: 18 EKQALKKLQASLKLYADDS-----APALAI 42
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.138 0.417
Gapped
Lambda K H
0.267 0.0494 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,150,917
Number of extensions: 302741
Number of successful extensions: 500
Number of sequences better than 10.0: 1
Number of HSP's gapped: 495
Number of HSP's successfully gapped: 18
Length of query: 337
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 243
Effective length of database: 4,077,219
Effective search space: 990764217
Effective search space used: 990764217
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.3 bits)