RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9795
(337 letters)
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 959
Score = 187 bits (474), Expect = 1e-53
Identities = 88/271 (32%), Positives = 147/271 (54%), Gaps = 6/271 (2%)
Query: 50 ESRSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPD 109
+ +E L +ET + L +L ++ ++ ++ R+AGA+ FKN++KR W E+
Sbjct: 18 STAKTSERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVD-ENGNH 76
Query: 110 KIHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGD 169
+ A++ E IK I+ LM++ P +Q Q+ +A + I SDFPD+WP+L++D+ ++ D
Sbjct: 77 LLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDD 136
Query: 170 FHIINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFTELFKATINLVGEHKDNP 229
GVL AHS+FKR+R F+S +L+ EIK VLD F PF L K + +++N
Sbjct: 137 MVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNK 196
Query: 230 TALKVIYNSLVVSCKIFYSLNFQDLPEYFEDNMVVWMPALHNLLVTDVPCLRTDSIFVNS 289
+L ++++ L+V K++Y N QD+PE+FEDN+ V M H L P L
Sbjct: 197 ASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDP-----D 251
Query: 290 FRRFISDVETRRRAACDFVKILCKYMEDKMM 320
S + + + + V++ ED
Sbjct: 252 ETEHASVLIKVKSSIQELVQLYTTRYEDVFG 282
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 888
Score = 94.8 bits (234), Expect = 6e-22
Identities = 23/165 (13%), Positives = 53/165 (32%), Gaps = 8/165 (4%)
Query: 50 ESRSPTENFLESVETNQNYPLLILTLVER-ADVDMTIRIAGAVAFKNYVKRNWPLVEDEP 108
+ + LE + ++ ++ ++ + D R + KN VK ++
Sbjct: 26 TIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHF------- 78
Query: 109 DKIHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTG 168
+ IK L+ + S I+ + I WP L+ + + +
Sbjct: 79 QNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSE 138
Query: 169 DFHIINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFTE 213
D++ G + + S L + ++ F + F
Sbjct: 139 DYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKH 183
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId:
9606]}
Length = 876
Score = 87.5 bits (215), Expect = 1e-19
Identities = 38/285 (13%), Positives = 91/285 (31%), Gaps = 19/285 (6%)
Query: 50 ESRSPTENFLESVETNQ--NYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDE 107
+ FLE + + + ++ R+A + KN + P ++ +
Sbjct: 16 LELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQ 75
Query: 108 ----PDKIHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFP-DKWPSLITDMV 162
I A+ R +K +LH L + S A I ++ P ++WP LI +V
Sbjct: 76 YQQRWLAIDANARREVKNYVLHT-LGTETYRPSSASQCVAGIACAEIPVNQWPELIPQLV 134
Query: 163 AKFGTGDF--HIINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFTELFKATIN 220
A + H+ L + + + ++L + +L + + +
Sbjct: 135 ANVTNPNSTEHMKESTLEAIGYICQ----DIDPEQLQDKSNEILTAIIQGMRKEEPSNNV 190
Query: 221 LVGEHKDNPTALKVIYNSLVVSCKIFYSLN-----FQDLPEYFEDNMVVWMPALHNLLVT 275
+ +L+ + + + + Q + + + +L
Sbjct: 191 KLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ 250
Query: 276 DVPCLRTDSIFVNSFRRFISDVETRRRAACDFVKILCKYMEDKMM 320
+ ++F + SD++ +F +C D +
Sbjct: 251 YMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAI 295
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 861
Score = 81.4 bits (199), Expect = 2e-17
Identities = 32/293 (10%), Positives = 77/293 (26%), Gaps = 38/293 (12%)
Query: 50 ESRSPTENFLESVETNQ--NYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDE 107
R +E L+ + + + L ++ + + RI A+ KN + + +
Sbjct: 20 NIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQ 79
Query: 108 -----PDKIHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPD-KWPSLITDM 161
++ + IK L +++ I + A I + P WP L+ M
Sbjct: 80 FAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIM 139
Query: 162 VAKFGTGDFHIINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFTELFKATINL 221
V G V + + + A +
Sbjct: 140 VDNTGAEQ---PENVKRASLLAL---------GYMCESADPQSQALVSSSNNILIAIVQG 187
Query: 222 VGEHKDNPTALKVIYNSLVVSCKIFYSLNFQDLPEYFEDNMVVWMPALHNLLVTDVPCLR 281
+ + ++ D + ++NM + + +
Sbjct: 188 AQSTETSKA------------VRLAALNALADSLIFIKNNMEREGERNYLM------QVV 229
Query: 282 TDSIFVNSFRRFISDVETRRRAACDFVKILCKYMEDKMMGTSTAGAKDLFPPI 334
++ + + + + YME + + A K +
Sbjct: 230 CEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKV 282
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId:
9606]}
Length = 458
Score = 66.7 bits (161), Expect = 8e-13
Identities = 38/282 (13%), Positives = 83/282 (29%), Gaps = 13/282 (4%)
Query: 50 ESRSPTENFLESVETNQ--NYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDE 107
+ FLE + + + ++ R+A + KN + P ++ +
Sbjct: 15 LELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQ 74
Query: 108 ----PDKIHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDK-WPSLITDMV 162
I A+ R +K +L + + S A I ++ P WP LI +V
Sbjct: 75 YQQRWLAIDANARREVKNYVLQTLG-TETYRPSSASQCVAGIACAEIPVNQWPELIPQLV 133
Query: 163 AKFGT--GDFHIINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFT--ELFKAT 218
A H+ L + + E K + ++ K + A
Sbjct: 134 ANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAA 193
Query: 219 INLVGEHKDNPTALKVIYNSLVVSCKIFYSLNFQDLPEYFEDNMVVWMPALHNLLVTDVP 278
N + + A + ++ + + + +L +
Sbjct: 194 TNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRV-AALQNLVKIMSLYYQYME 252
Query: 279 CLRTDSIFVNSFRRFISDVETRRRAACDFVKILCKYMEDKMM 320
++F + SD++ +F +C D +
Sbjct: 253 TYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAI 294
>d2ia1a1 d.359.1.1 (A:1-166) Uncharacterized protein BH3703
{Bacillus halodurans [TaxId: 86665]}
Length = 166
Score = 28.2 bits (63), Expect = 1.1
Identities = 2/32 (6%), Positives = 8/32 (25%), Gaps = 2/32 (6%)
Query: 177 LHTAHSLFKRYRHEFK--SQKLWTEIKFVLDN 206
+ +R ++ + W +
Sbjct: 74 YNELSFCISDFRKDYAEAFGEPWMSFQMTFYA 105
>d1j5ya2 d.94.2.1 (A:68-174) Putative transcriptional regulator
TM1602, C-terminal domain {Thermotoga maritima [TaxId:
2336]}
Length = 107
Score = 26.1 bits (58), Expect = 2.6
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 45 KNIQLESRSPTENFLESVETNQNYPLLILT 74
I + S F+ +E + PLL L+
Sbjct: 46 GIIDVSSEEEVLKFVNLMEMAKTEPLLTLS 75
>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA,
N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 129
Score = 26.2 bits (57), Expect = 4.0
Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 8/47 (17%)
Query: 128 LTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIIN 174
+P+ I A+IG S+ P K + + ++ G + +N
Sbjct: 5 FFNPKGI--------AVIGASNDPKKLGYEVFKNLKEYKKGKVYPVN 43
>d1v0aa1 b.18.1.30 (A:4-170) Endoglucanase H {Clostridium
thermocellum [TaxId: 1515]}
Length = 167
Score = 25.3 bits (55), Expect = 7.3
Identities = 5/42 (11%), Positives = 11/42 (26%), Gaps = 1/42 (2%)
Query: 169 DFHIINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKP 210
F I + + + W I+ +F +
Sbjct: 83 RFMIAEK-SINGVGDGEHWVYSITPDSSWKTIEIPFSSFRRR 123
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.138 0.417
Gapped
Lambda K H
0.267 0.0521 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,260,694
Number of extensions: 58503
Number of successful extensions: 148
Number of sequences better than 10.0: 1
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 15
Length of query: 337
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 251
Effective length of database: 1,226,816
Effective search space: 307930816
Effective search space used: 307930816
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.7 bits)