BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy980
         (587 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4EAB|A Chain A, X-Ray Crystal Structure Of The H141a Mutant Of
           Gdp-Perosamine N-Acetyl Transferase From Caulobacter
           Crescentus In Complex With Coa And Gdp- Perosamine
          Length = 220

 Score = 30.0 bits (66), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 6/72 (8%)

Query: 117 GVILLCGLFIYDIFWVFGTNVMVTVAKSFEAPIKL-----VFPQDLLEHGVSANNFAMLG 171
           GV ++ G+ I    W+ G   ++      +A  +L     + P   L  GVS    A LG
Sbjct: 117 GVAVMAGVAINADSWI-GDLAIINTGAVVDADCRLGAACHLGPASALAGGVSVGERAFLG 175

Query: 172 LGDIVVPGIFIA 183
           +G  V+PG+ I 
Sbjct: 176 VGARVIPGVTIG 187


>pdb|4HYC|A Chain A, Structure Of A Presenilin Family Intramembrane Aspartate
           Protease In P2 Space Group
 pdb|4HYC|B Chain B, Structure Of A Presenilin Family Intramembrane Aspartate
           Protease In P2 Space Group
 pdb|4HYC|C Chain C, Structure Of A Presenilin Family Intramembrane Aspartate
           Protease In P2 Space Group
 pdb|4HYC|D Chain D, Structure Of A Presenilin Family Intramembrane Aspartate
           Protease In P2 Space Group
 pdb|4HYC|E Chain E, Structure Of A Presenilin Family Intramembrane Aspartate
           Protease In P2 Space Group
 pdb|4HYC|F Chain F, Structure Of A Presenilin Family Intramembrane Aspartate
           Protease In P2 Space Group
 pdb|4HYC|G Chain G, Structure Of A Presenilin Family Intramembrane Aspartate
           Protease In P2 Space Group
 pdb|4HYC|H Chain H, Structure Of A Presenilin Family Intramembrane Aspartate
           Protease In P2 Space Group
 pdb|4HYD|A Chain A, Structure Of A Presenilin Family Intramembrane Aspartate
           Protease In C2221 Space Group
 pdb|4HYD|B Chain B, Structure Of A Presenilin Family Intramembrane Aspartate
           Protease In C2221 Space Group
 pdb|4HYD|C Chain C, Structure Of A Presenilin Family Intramembrane Aspartate
           Protease In C2221 Space Group
 pdb|4HYD|D Chain D, Structure Of A Presenilin Family Intramembrane Aspartate
           Protease In C2221 Space Group
 pdb|4HYG|A Chain A, Structure Of A Presenilin Family Intramembrane Aspartate
           Protease In C222 Space Group
 pdb|4HYG|B Chain B, Structure Of A Presenilin Family Intramembrane Aspartate
           Protease In C222 Space Group
 pdb|4HYG|C Chain C, Structure Of A Presenilin Family Intramembrane Aspartate
           Protease In C222 Space Group
 pdb|4HYG|D Chain D, Structure Of A Presenilin Family Intramembrane Aspartate
           Protease In C222 Space Group
          Length = 301

 Score = 29.3 bits (64), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 14/72 (19%)

Query: 124 LFIYDIFWVFGTNVMVTVAKSF---EAPIKLVFPQDL----------LEHGVSANNFAML 170
           L +YD   V+ T  M+T+A+     +API +V P+            +  G     F M 
Sbjct: 158 LAVYDAISVYRTKHMITLAEGVLETKAPIMVVVPKRADYSFRKEGLNISEGEERGAFVM- 216

Query: 171 GLGDIVVPGIFI 182
           G+GD+++P I +
Sbjct: 217 GMGDLIMPSILV 228


>pdb|3PPS|A Chain A, Crystal Structure Of An Ascomycete Fungal Laccase From
           Thielavia Arenaria
 pdb|3PPS|B Chain B, Crystal Structure Of An Ascomycete Fungal Laccase From
           Thielavia Arenaria
 pdb|3PPS|C Chain C, Crystal Structure Of An Ascomycete Fungal Laccase From
           Thielavia Arenaria
 pdb|3PPS|D Chain D, Crystal Structure Of An Ascomycete Fungal Laccase From
           Thielavia Arenaria
          Length = 604

 Score = 29.3 bits (64), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 7/88 (7%)

Query: 157 LLEHGVSANNFAMLGLGDIVVPGIFIALLLRFDLSLNRRS---NTYFNTAFLAYFLGLMA 213
           L+ H ++     M+ +    V  +F+A+  R+D++++  S   N +FN  F     G   
Sbjct: 283 LVGHNMTVIATDMVPVNAFTVSSLFLAVGQRYDVTIDANSPVGNYWFNVTFGDGLCGSSN 342

Query: 214 TIFVMHVFK-HAQPALLYLVPACLGLPL 240
             F   +F+    PA L   P   GLP+
Sbjct: 343 NKFPAAIFRYQGAPATL---PTDQGLPV 367


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.331    0.145    0.458 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,029,275
Number of Sequences: 62578
Number of extensions: 706778
Number of successful extensions: 1357
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1353
Number of HSP's gapped (non-prelim): 9
length of query: 587
length of database: 14,973,337
effective HSP length: 104
effective length of query: 483
effective length of database: 8,465,225
effective search space: 4088703675
effective search space used: 4088703675
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 54 (25.4 bits)