Query psy980
Match_columns 587
No_of_seqs 347 out of 660
Neff 4.8
Searched_HMMs 29240
Date Fri Aug 16 20:02:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy980.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/980hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hyg_A Putative uncharacterize 99.9 6.2E-27 2.1E-31 236.8 5.3 175 72-250 105-297 (301)
2 4hyg_A Putative uncharacterize 99.6 6.5E-17 2.2E-21 163.9 1.4 137 422-561 106-297 (301)
3 2kr6_A Presenilin-1; protease, 95.6 0.011 3.7E-07 56.4 5.0 56 168-230 88-146 (176)
4 2kr6_A Presenilin-1; protease, 60.9 6.2 0.00021 37.6 3.7 37 511-549 116-152 (176)
5 3arc_J Photosystem II reaction 3.5 5.4E+02 0.018 18.9 1.9 12 466-477 20-31 (40)
6 1v18_B APC protein, adenomatou 3.2 4.1E+02 0.014 20.0 1.0 22 272-293 9-30 (47)
7 1wrg_A LH-1, light-harvesting 3.2 1E+03 0.035 18.4 3.4 29 4-32 22-50 (55)
8 1f53_A Yeast killer toxin-like 3.0 3E+02 0.01 23.1 0.2 14 569-585 32-45 (84)
9 1ul5_A SPL7, squamosa promoter 2.5 6.8E+02 0.023 21.2 1.8 21 272-292 54-74 (88)
10 1ul4_A SPL4, squamosa promoter 2.3 6.4E+02 0.022 21.6 1.4 19 272-290 59-77 (94)
No 1
>4hyg_A Putative uncharacterized protein; protease, membrane protein; 3.32A {Methanoculleus marisnigri JR1} PDB: 4hyc_A 4hyd_A
Probab=99.93 E-value=6.2e-27 Score=236.75 Aligned_cols=175 Identities=21% Similarity=0.267 Sum_probs=129.3
Q ss_pred hHHHHHHHHHHhhhhccccchHHhHHHHHHHHHHHHh--cccChhHHHHHHHHHHhhhheeeEeccchhhhhccc---CC
Q psy980 72 IVCFIVCSVFGSWYLVKKHWIANNLFGLAFAVNGIEL--LHLNNVMIGVILLCGLFIYDIFWVFGTNVMVTVAKS---FE 146 (587)
Q Consensus 72 l~~~~~s~~~~~~y~~~~~WilnNilgi~~~i~~i~~--l~l~s~k~g~iLL~gLf~YDIFwVFgtsVMvtVA~~---~d 146 (587)
.++.+.|..+..+++.+++|+.+|+.|+++|..+... ++++.+ .+.+||++|.+||.+|||+|++|+++|++ .|
T Consensus 105 ~~a~~~a~~~~~ll~~ypeWyvid~~Gi~~~aG~aalFGISl~~~-paiiLL~~LavYDaISVy~TkHMvtLAegvmdlk 183 (301)
T 4hyg_A 105 AGTLIGAVAVTALLYLYPEWYVIDILGVLISAGVASIFGISLEPL-PVLVLLVLLAVYDAISVYRTKHMITLAEGVLETK 183 (301)
T ss_dssp HHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHSSCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTTC----
T ss_pred HHHHHHHHHHHHHHHhcccHHHhhHHHHHHHhhHHHHHhhccchH-HHHHHHHHHHHHHhhhccCchHHHHHHHhhhccC
Confidence 4666778888889999999999999999999776655 566888 88999999999999999999999999998 79
Q ss_pred CCeEEEecccccc----cC-----ccCCccccccCCcchhhHHHHHHHHHhhhccCC---CCccchhHhHHHHHHHHHHH
Q psy980 147 APIKLVFPQDLLE----HG-----VSANNFAMLGLGDIVVPGIFIALLLRFDLSLNR---RSNTYFNTAFLAYFLGLMAT 214 (587)
Q Consensus 147 ~PikL~~P~~~~~----~~-----~~~~~~smLGLGDIViPGifIa~~lRFD~~~~~---~~~~YF~~s~igY~lGL~~T 214 (587)
.|+++++|+.... .+ -.+++..++|+||+|+|+++++.+.|||.+... -+-+ +..+++|+.+|+.++
T Consensus 184 ~PilfViP~~~~ys~~~~~~~~~~~~er~a~~iGlGD~viP~ilVvSa~~F~~~~~~~g~~~lP-algA~~Gt~~Gl~vL 262 (301)
T 4hyg_A 184 APIMVVVPKRADYSFRKEGLNISEGEERGAFVMGMGDLIMPSILVVSSHVFVDAPAVLWTLSAP-TLGAMVGSLVGLAVL 262 (301)
T ss_dssp ----------------------------CHHHHHHHHHHHHHHHHHHHHCC---------CCCS-CHHHHHHHHHHHHHH
T ss_pred CceEEEEecCCCccccccccccccccccceeEecCcchhHHHHHHHHHHHHcccccccccccch-HHHHHHHHHHHHHHH
Confidence 9999999985321 11 134678899999999999999999999975331 0124 789999999999998
Q ss_pred HH-HHHHhCCCcceehhhhhhhhHHHHHHHHHHHhhh
Q psy980 215 IF-VMHVFKHAQPALLYLVPACLGLPLLIIARISLMD 250 (587)
Q Consensus 215 ~~-vm~~~~~aQPALLYLVP~~l~~~~l~A~~r~e~~ 250 (587)
+. ++ .+++||+|.||.+.++++.++.++.+||++
T Consensus 263 l~~V~--~grpqaGLP~LN~GaI~Gfllg~l~~G~~~ 297 (301)
T 4hyg_A 263 LYFVN--KGNPQAGLPPLNGGAILGFLVGAALAGSFS 297 (301)
T ss_dssp HHHHT--SSSCCCSHHHHHHHHHHHHHHTTSCC----
T ss_pred HHHHH--cCCCCCCCCccchHHHHHHHHHHHHhceec
Confidence 66 44 899999999999999999999999998864
No 2
>4hyg_A Putative uncharacterized protein; protease, membrane protein; 3.32A {Methanoculleus marisnigri JR1} PDB: 4hyc_A 4hyd_A
Probab=99.61 E-value=6.5e-17 Score=163.95 Aligned_cols=137 Identities=22% Similarity=0.300 Sum_probs=103.4
Q ss_pred hhhhHHHhhhhhhhccccchHHHHHHHHHHHHHHhhc--ccCchHHHHHHHHHHHhhheeeEeeeceeehhhcc---CCC
Q psy980 422 VCFIVCSVFGSWYLVKKHWIANNLFGLAFAVNGIELL--HLNNVMIGVILLCGLFIYDIFWVFGTNVMVTVAKS---FEA 496 (587)
Q Consensus 422 ~~~~~~~~~~~~y~~~~~Wil~Nilgi~f~i~~i~~l--~l~s~k~g~iLL~gLF~YDIFwVFgt~VMvtVA~~---~d~ 496 (587)
++.+.+.+++.+++.+++|+..|+.|+++|..+.+.. ++..+ .+.+||++|++||.+|||+|+.|+|+|++ .|.
T Consensus 106 ~a~~~a~~~~~ll~~ypeWyvid~~Gi~~~aG~aalFGISl~~~-paiiLL~~LavYDaISVy~TkHMvtLAegvmdlk~ 184 (301)
T 4hyg_A 106 GTLIGAVAVTALLYLYPEWYVIDILGVLISAGVASIFGISLEPL-PVLVLLVLLAVYDAISVYRTKHMITLAEGVLETKA 184 (301)
T ss_dssp HHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHSSCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-----
T ss_pred HHHHHHHHHHHHHHhcccHHHhhHHHHHHHhhHHHHHhhccchH-HHHHHHHHHHHHHhhhccCchHHHHHHHhhhccCC
Confidence 5566777888889999999999999999999887764 55888 99999999999999999999999999999 789
Q ss_pred ceeecccc-----c---------C--------ccch------------h---------------HHHHHHHHHHHHHHHH
Q psy980 497 PIKYVHES-----F---------K--------GLTQ------------W---------------FSNFFAWHLGLMATIF 527 (587)
Q Consensus 497 Pikl~~p~-----~---------~--------gl~~------------~---------------~~~~~~Y~~GL~~T~~ 527 (587)
|++++.|+ + + |+++ + ...++||.+||.+++.
T Consensus 185 PilfViP~~~~ys~~~~~~~~~~~~er~a~~iGlGD~viP~ilVvSa~~F~~~~~~~g~~~lPalgA~~Gt~~Gl~vLl~ 264 (301)
T 4hyg_A 185 PIMVVVPKRADYSFRKEGLNISEGEERGAFVMGMGDLIMPSILVVSSHVFVDAPAVLWTLSAPTLGAMVGSLVGLAVLLY 264 (301)
T ss_dssp ---------------------------CHHHHHHHHHHHHHHHHHHHHCC---------CCCSCHHHHHHHHHHHHHHHH
T ss_pred ceEEEEecCCCccccccccccccccccceeEecCcchhHHHHHHHHHHHHcccccccccccchHHHHHHHHHHHHHHHHH
Confidence 99999984 1 0 1111 0 1236889999999876
Q ss_pred -HHHhhccCCceeEeeccccchHHHHHHHhhchHH
Q psy980 528 -VMHVFKHAQPALLYLVPACLGLPLLVALVKGDLS 561 (587)
Q Consensus 528 -vm~~fk~aQPALLYLVP~~l~~~~~~A~~rgEl~ 561 (587)
+| .+++||.|.||.++++++.++.|+.+||+.
T Consensus 265 ~V~--~grpqaGLP~LN~GaI~Gfllg~l~~G~~~ 297 (301)
T 4hyg_A 265 FVN--KGNPQAGLPPLNGGAILGFLVGAALAGSFS 297 (301)
T ss_dssp HHT--SSSCCCSHHHHHHHHHHHHHHTTSCC----
T ss_pred HHH--cCCCCCCCCccchHHHHHHHHHHHHhceec
Confidence 34 899999999999999999999999999986
No 3
>2kr6_A Presenilin-1; protease, alternative splicing, alzheimer disease, amyloidos apoptosis, cell adhesion, disease mutation; NMR {Homo sapiens}
Probab=95.63 E-value=0.011 Score=56.41 Aligned_cols=56 Identities=30% Similarity=0.497 Sum_probs=48.6
Q ss_pred ccccCCcchhhHHHHHHHH--H-hhhccCCCCccchhHhHHHHHHHHHHHHHHHHHhCCCcceehh
Q psy980 168 AMLGLGDIVVPGIFIALLL--R-FDLSLNRRSNTYFNTAFLAYFLGLMATIFVMHVFKHAQPALLY 230 (587)
Q Consensus 168 smLGLGDIViPGifIa~~l--R-FD~~~~~~~~~YF~~s~igY~lGL~~T~~vm~~~~~aQPALLY 230 (587)
.-|||||-|+=+++++-+. + .|.. =..+|++|..+||++|...+.+++++-|||..
T Consensus 88 ikLGLGDFIFYSvLVgkAa~~~~~d~~-------t~~ac~vaIL~GL~~TL~lLa~~~~aLPALPi 146 (176)
T 2kr6_A 88 VKLGLGDFIFYSVLVGKASATASGDWN-------TTIACFVAILIGLCLTLLLLAIFKKALPALPI 146 (176)
T ss_dssp CSSCTTTHHHHHHHHHHHHHHSCCTTT-------THHHHHHHHHHHHHHHHHHHHHHTCSCSSSSS
T ss_pred ccccccCeeehHHHHHHHHHhhccCHH-------HHHHHHHHHHHHHHHHHHHHhhhcccCCCCcH
Confidence 5799999999999999886 4 2442 36789999999999999999999999999973
No 4
>2kr6_A Presenilin-1; protease, alternative splicing, alzheimer disease, amyloidos apoptosis, cell adhesion, disease mutation; NMR {Homo sapiens}
Probab=60.92 E-value=6.2 Score=37.65 Aligned_cols=37 Identities=35% Similarity=0.597 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhccCCceeEeeccccchH
Q psy980 511 WFSNFFAWHLGLMATIFVMHVFKHAQPALLYLVPACLGL 549 (587)
Q Consensus 511 ~~~~~~~Y~~GL~~T~~vm~~fk~aQPALLYLVP~~l~~ 549 (587)
..++++|..+||++|+..+.+++++=|||= +|..+|.
T Consensus 116 ~~ac~vaIL~GL~~TL~lLa~~~~aLPALP--iSI~lG~ 152 (176)
T 2kr6_A 116 TIACFVAILIGLCLTLLLLAIFKKALPALP--ISITFGL 152 (176)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSCSSSS--SCCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCCCCc--HHHHHHH
Confidence 456789999999999999999999999984 3444433
No 5
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=3.48 E-value=5.4e+02 Score=18.89 Aligned_cols=12 Identities=58% Similarity=1.251 Sum_probs=8.5
Q ss_pred HHHHHHHHHhhh
Q psy980 466 GVILLCGLFIYD 477 (587)
Q Consensus 466 g~iLL~gLF~YD 477 (587)
+.|-+.|+|+|-
T Consensus 20 ~vi~~~giFfyG 31 (40)
T 3arc_J 20 GVIVIVGLFFYG 31 (40)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhhheeeEEEee
Confidence 456677888884
No 6
>1v18_B APC protein, adenomatous polyposis coli; signaling protein, signalling complex, WNT signal, beta-catenin degradation complex, cell adhesion; HET: SEP; 2.1A {Homo sapiens}
Probab=3.19 E-value=4.1e+02 Score=20.00 Aligned_cols=22 Identities=23% Similarity=0.381 Sum_probs=12.0
Q ss_pred cccccccCCccccccccccccc
Q psy980 272 HLLKRRNNNNRFCAISISSLNR 293 (587)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~ 293 (587)
|+-.|.-..|-+|+.|.|.|.-
T Consensus 9 ~F~~E~~~~~FScaSSLSAL~l 30 (47)
T 1v18_B 9 HFATESTPDGFSCSSSLSALSL 30 (47)
T ss_dssp CCCCCSCCCCCC----CCCCCC
T ss_pred EEeeecCCCCccchhccccccc
Confidence 4445666778899999887643
No 7
>1wrg_A LH-1, light-harvesting protein B-880, beta chain; membrane protein, pigment binding, photosynthesis; NMR {Rhodospirillum rubrum}
Probab=3.16 E-value=1e+03 Score=18.43 Aligned_cols=29 Identities=28% Similarity=0.504 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccccccC
Q psy980 4 LLLTGYFFLLGVLALCYLLSPVISPLVPA 32 (587)
Q Consensus 4 ~ll~~Yf~~lGv~al~~~l~p~~~~~~p~ 32 (587)
.+++.+..+.++..++|++.=..++-+|.
T Consensus 22 ~f~~~~~~F~~iAvvAH~L~~~wrPWl~g 50 (55)
T 1wrg_A 22 IFTSSILVFFGVAAFAHLLVWIWRPWVPG 50 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCSSSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 46788899999999999998777777654
No 8
>1f53_A Yeast killer toxin-like protein; killer toxin-like protein,SKLP, crystallin family; NMR {Streptomyces SP} SCOP: b.11.1.4
Probab=3.00 E-value=3e+02 Score=23.05 Aligned_cols=14 Identities=50% Similarity=1.460 Sum_probs=10.0
Q ss_pred ccccccceeeeeecccC
Q psy980 569 SEVDMGLAVGWWFDTMS 585 (587)
Q Consensus 569 ~~~~~~~~~~~~~~~~~ 585 (587)
+..|+| |||.|..|
T Consensus 32 G~~~fg---~wWVdkIs 45 (84)
T 1f53_A 32 GRIDFG---GWWVDKIS 45 (84)
T ss_dssp BCCBCC---SCCEEEEE
T ss_pred Cccccc---CEEEEEEe
Confidence 345677 89988765
No 9
>1ul5_A SPL7, squamosa promoter binding protein-like 7; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=2.50 E-value=6.8e+02 Score=21.19 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=17.1
Q ss_pred cccccccCCcccccccccccc
Q psy980 272 HLLKRRNNNNRFCAISISSLN 292 (587)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~ 292 (587)
|.|.|.|.+.+||-.+..+=|
T Consensus 54 H~L~eFD~~kRSCR~rL~~hn 74 (88)
T 1ul5_A 54 HLLPDFDEGKRSCRRKLERHN 74 (88)
T ss_dssp EEGGGBCSSTTSBSSSCCCSS
T ss_pred cChhhhccccchHHHHHHHHH
Confidence 567799999999999976544
No 10
>1ul4_A SPL4, squamosa promoter binding protein-like 4; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=2.33 E-value=6.4e+02 Score=21.61 Aligned_cols=19 Identities=21% Similarity=0.401 Sum_probs=16.0
Q ss_pred cccccccCCcccccccccc
Q psy980 272 HLLKRRNNNNRFCAISISS 290 (587)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~ 290 (587)
|.|.|.|.+.++|..+..+
T Consensus 59 H~L~eFD~~kRSCR~rL~~ 77 (94)
T 1ul4_A 59 HDLQEFDEAKRSCRRRLAG 77 (94)
T ss_dssp EETTTCCSSCCSCSTTTTC
T ss_pred CCHHHhccccchHHHHHHH
Confidence 5677999999999999764
Done!