Query psy980
Match_columns 587
No_of_seqs 347 out of 660
Neff 4.8
Searched_HMMs 13730
Date Fri Aug 16 20:02:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy980.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/980hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1e42a2 d.105.1.1 (A:825-937) 11.7 15 0.0011 30.6 -1.2 55 246-301 10-67 (113)
2 d2axtj1 f.23.32.1 (J:7-40) Pho 6.8 1.1E+02 0.0082 20.0 1.9 14 465-478 13-26 (34)
3 d1bvyf_ c.23.5.1 (F:) FMN-bind 4.3 1E+02 0.0072 25.6 0.4 30 163-192 82-111 (152)
4 d1vl6a2 c.58.1.3 (A:1-154) Mal 3.9 1.4E+02 0.0099 25.8 1.0 13 165-177 65-77 (154)
5 d2axtt1 f.23.34.1 (T:1-30) Pho 3.7 1.1E+02 0.0084 19.1 0.2 12 469-480 12-23 (30)
6 d1ja1a2 c.23.5.2 (A:63-239) NA 3.3 1E+02 0.0076 26.4 -0.4 29 163-192 102-130 (177)
7 d1lghb_ f.3.1.1 (B:) Light-har 3.2 3E+02 0.022 18.8 2.1 32 288-319 3-34 (43)
8 d1mb6a_ g.3.6.2 (A:) Huwentoxi 3.1 2.2E+02 0.016 18.4 1.2 16 272-287 4-19 (35)
9 d1ykga1 c.23.5.2 (A:63-208) Su 2.6 1.6E+02 0.012 24.2 0.1 29 163-192 81-109 (146)
10 d2cx4a1 c.47.1.10 (A:4-163) Ba 2.5 5.3E+02 0.039 19.9 3.5 38 533-575 28-65 (160)
No 1
>d1e42a2 d.105.1.1 (A:825-937) Beta2-adaptin AP2, C-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.70 E-value=15 Score=30.57 Aligned_cols=55 Identities=15% Similarity=0.245 Sum_probs=40.7
Q ss_pred HHhhhhcCCCCCCccceeeeec---cccccccccccCCccccccccccccccccccchh
Q psy980 246 ISLMDNRYPTAGQRSHLHFSIE---FYPDHLLKRRNNNNRFCAISISSLNRRSNTYFNT 301 (587)
Q Consensus 246 r~e~~~~~~~~~~~s~~~~s~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (587)
|+.+...|++-...+++++++. .-+|..++++++||=||-|.=. .+-|..-||-|
T Consensus 10 r~~Fl~~Wk~Ip~~~E~~~~i~~~~~~~da~~~kL~~~nif~IAkR~-~~gq~~lYfS~ 67 (113)
T d1e42a2 10 RQVFLATWKDIPNENELQFQIKECHLNADTVSSKLQNNNVYTIAKRN-VEGQDMLYQSL 67 (113)
T ss_dssp HHHHHHHHHHSCGGGCEEEEECSCCCCHHHHHHHHHTTTCEEEEEEE-ETTEEEEEEEE
T ss_pred HHHHHHHHhcCchhhhhhhhcCCCccCHHHHHHHHhhCceEEEEeec-CCCCeEEEEEE
Confidence 5667777887778888777776 5678888899999999988632 34455567755
No 2
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.85 E-value=1.1e+02 Score=19.97 Aligned_cols=14 Identities=50% Similarity=1.113 Sum_probs=10.5
Q ss_pred HHHHHHHHHHhhhe
Q psy980 465 IGVILLCGLFIYDI 478 (587)
Q Consensus 465 ~g~iLL~gLF~YDI 478 (587)
++.|-+.|+|+|--
T Consensus 13 ~~vi~~vG~FfYGs 26 (34)
T d2axtj1 13 MGVIVIVGLFFYGA 26 (34)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred hhhHhheeeeeeee
Confidence 45677889999853
No 3
>d1bvyf_ c.23.5.1 (F:) FMN-binding domain of the cytochrome P450bm-3 {Bacillus megaterium [TaxId: 1404]}
Probab=4.27 E-value=1e+02 Score=25.56 Aligned_cols=30 Identities=17% Similarity=0.256 Sum_probs=25.2
Q ss_pred cCCccccccCCcchhhHHHHHHHHHhhhcc
Q psy980 163 SANNFAMLGLGDIVVPGIFIALLLRFDLSL 192 (587)
Q Consensus 163 ~~~~~smLGLGDIViPGifIa~~lRFD~~~ 192 (587)
.+.+|+++|+||---|=-|......+|+..
T Consensus 82 ~~~~~aV~GlGds~Y~~~fc~~~~~ld~~l 111 (152)
T d1bvyf_ 82 KGVRYSVFGCGDKNWATTYQKVPAFIDETL 111 (152)
T ss_dssp TTCCEEEEEEECTTSGGGTTHHHHHHHHHH
T ss_pred cCceeeeeeccccchhhhhhhHHHHHHHHH
Confidence 456899999999999977888888888865
No 4
>d1vl6a2 c.58.1.3 (A:1-154) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}
Probab=3.86 E-value=1.4e+02 Score=25.81 Aligned_cols=13 Identities=46% Similarity=0.670 Sum_probs=10.4
Q ss_pred CccccccCCcchh
Q psy980 165 NNFAMLGLGDIVV 177 (587)
Q Consensus 165 ~~~smLGLGDIVi 177 (587)
.+.+.||||||=-
T Consensus 65 dGtaVLGLGniGp 77 (154)
T d1vl6a2 65 DGSAVLGLGNIGP 77 (154)
T ss_dssp CSTTBTTTBSCCH
T ss_pred CCceeecCCCccc
Confidence 4678999999963
No 5
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.70 E-value=1.1e+02 Score=19.08 Aligned_cols=12 Identities=33% Similarity=0.891 Sum_probs=9.0
Q ss_pred HHHHHHhhheee
Q psy980 469 LLCGLFIYDIFW 480 (587)
Q Consensus 469 LL~gLF~YDIFw 480 (587)
.++|||++.||+
T Consensus 12 c~i~lfffaiff 23 (30)
T d2axtt1 12 CIIALFFFAIFF 23 (30)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 467888888875
No 6
>d1ja1a2 c.23.5.2 (A:63-239) NADPH-cytochrome p450 reductase, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=3.28 E-value=1e+02 Score=26.36 Aligned_cols=29 Identities=31% Similarity=0.406 Sum_probs=23.3
Q ss_pred cCCccccccCCcchhhHHHHHHHHHhhhcc
Q psy980 163 SANNFAMLGLGDIVVPGIFIALLLRFDLSL 192 (587)
Q Consensus 163 ~~~~~smLGLGDIViPGifIa~~lRFD~~~ 192 (587)
...+|+++|+||---| -|.....++|...
T Consensus 102 ~~~~yaVfGlGds~Y~-~Fc~a~~~l~~~L 130 (177)
T d1ja1a2 102 TGVKFAVFGLGNKTYE-HFNAMGKYVDQRL 130 (177)
T ss_dssp TTCEEEEEEEECSSSS-STTHHHHHHHHHH
T ss_pred cCceEEEEecCCccHH-HHHHHHHHHHHHH
Confidence 4468999999999888 5777788887764
No 7
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=3.19 E-value=3e+02 Score=18.76 Aligned_cols=32 Identities=22% Similarity=0.307 Sum_probs=14.1
Q ss_pred cccccccccccchhhHHHHHHHHHHHHHHHhh
Q psy980 288 ISSLNRRSNTYFNTAFLAYFLGLMATIFVMHV 319 (587)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (587)
.|||..+...=||..++.-|.+..+--.++|+
T Consensus 3 ~sGLT~~EA~EfH~~~~~g~~~F~~iAvvAHi 34 (43)
T d1lghb_ 3 LSGLTEEEAIAVHDQFKTTFSAFIILAAVAHV 34 (43)
T ss_dssp SSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444333334454444444444444444444
No 8
>d1mb6a_ g.3.6.2 (A:) Huwentoxin-IV {Chinese bird spider (Selenocosmia huwena) [TaxId: 29017]}
Probab=3.08 E-value=2.2e+02 Score=18.41 Aligned_cols=16 Identities=31% Similarity=0.468 Sum_probs=13.0
Q ss_pred cccccccCCccccccc
Q psy980 272 HLLKRRNNNNRFCAIS 287 (587)
Q Consensus 272 ~~~~~~~~~~~~~~~~ 287 (587)
.+.|.-|+|||.|--|
T Consensus 4 ~~~~~cnpsndqcck~ 19 (35)
T d1mb6a_ 4 EIFKACNPSNDQCCKS 19 (35)
T ss_dssp CTTCBCCSSSCCBCTT
T ss_pred hhhcccCCCccccccc
Confidence 3567889999999876
No 9
>d1ykga1 c.23.5.2 (A:63-208) Sulfite reductase alpha-component CysJ N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=2.61 E-value=1.6e+02 Score=24.22 Aligned_cols=29 Identities=31% Similarity=0.427 Sum_probs=21.4
Q ss_pred cCCccccccCCcchhhHHHHHHHHHhhhcc
Q psy980 163 SANNFAMLGLGDIVVPGIFIALLLRFDLSL 192 (587)
Q Consensus 163 ~~~~~smLGLGDIViPGifIa~~lRFD~~~ 192 (587)
.+.+|+++|+||---| -|.....+.|...
T Consensus 81 ~~~~~aVfGlGds~Y~-~Fc~~~~~l~~~l 109 (146)
T d1ykga1 81 ENTAFAVFSLGDTSYE-FFCQSGKDFDSKL 109 (146)
T ss_dssp TTCEEEEEEECCTTSS-STTHHHHHHHHHH
T ss_pred CCCeEEEEcCcchhHH-HHHHHHHHHHHHH
Confidence 3457999999998886 3666667777654
No 10
>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]}
Probab=2.54 E-value=5.3e+02 Score=19.95 Aligned_cols=38 Identities=18% Similarity=0.336 Sum_probs=22.5
Q ss_pred ccCCceeEeeccccchHHHHHHHhhchHHHHhccccccccccc
Q psy980 533 KHAQPALLYLVPACLGLPLLVALVKGDLSALINVVVSEVDMGL 575 (587)
Q Consensus 533 k~aQPALLYLVP~~l~~~~~~A~~rgEl~~~w~~~~~~~~~~~ 575 (587)
++|+|.+|+..|+.-.+ .++.|+.++-+..++--+.|.
T Consensus 28 ~~gk~vvl~f~~~~~cp-----~C~~~~~~l~~~~~~~~~~~~ 65 (160)
T d2cx4a1 28 KRGRPAVLIFFPAAFSP-----VCTKELCTFRDKMAQLEKANA 65 (160)
T ss_dssp TTSSCEEEEECSCTTCH-----HHHHHHHHHHHTCTTTSTTCC
T ss_pred hCCCEEEEEecccccCC-----chhhhhhhhhccccccccccc
Confidence 57999999998874432 234556555554443333333
Done!