BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9800
(486 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WA5|C Chain C, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 960
Score = 187 bits (476), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 148/513 (28%), Positives = 248/513 (48%), Gaps = 66/513 (12%)
Query: 16 KYKDTAIYLVTSLASQGSTVKHGTTKSSTLVNLEDFAQQHIFPELNKPDELCPNELLSPH 75
K+KD IYL T+LA G+ G + ++ L+N+ DF + I P+L + P+ +L
Sbjct: 420 KFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNN--IPHIILRVD 477
Query: 76 LKQIFVLLFQRLSSSKTAKYSKV--SHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLV- 132
+ +L+ ++ + + + L++ VV++YA+ I+++L +R N +
Sbjct: 478 AIKYIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIF 537
Query: 133 TADVLAPLAADLYKNLLVIFTRPGSE-----ENEYAMKCIMRSMSTLQDKVVPYLSDLLF 187
+ ++ L KNL+ + + GS ENE+ M+ I R + T +D + P LL
Sbjct: 538 HKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLA 597
Query: 188 QLTQRLAAAAKNPSKPNYNHFLFEAITLAIRIVCKQNPEAVATFEQALFPIFQVIIQQDT 247
Q + + AKNPS P + H+ FE+I + +QN + ++ P F + +D
Sbjct: 598 QFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQN---LPLLVDSMMPTFLTVFSEDI 654
Query: 248 LEFLPYTFQILSLLLEFRPRGSISAPYLELYPFLLSPVLWSRPGNIHPLVRLLRAFITKS 307
EF+PY FQI++ ++E +I L LL+P +W GNI + RLL++FI K+
Sbjct: 655 QEFIPYVFQIIAFVVE--QSATIPESIKPLAQPLLAPNVWELKGNIPAVTRLLKSFI-KT 711
Query: 308 EPSQFSATLKLNNVLGVFQKLIASK----------------------------IFVLLFQ 339
+ S F L VLG+FQ+LIASK I VLL Q
Sbjct: 712 DSSIFP---DLVPVLGIFQRLIASKAYEVHGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQ 768
Query: 340 RLSSSKTAKYSKGLVTFLMFYVINMGATSLIQLIDSIQGSLFSMVAEKLILADLQKVSGA 399
RL +SKT +Y K L F +G+ LI ID +Q LF + I+ L +
Sbjct: 769 RLQNSKTERYVKKLTVFFGLISNKLGSDFLIHFIDEVQDGLFQQIWGNFIITTLPTIGNL 828
Query: 400 VNRKIAAFGLAKLLTEAKEVTEGPYVQAP---LTGALLNLIQLPEDDSTQP----EDHFV 452
++RKIA G+ + V G + Q+ L + +N + E S+Q ++ +V
Sbjct: 829 LDRKIALIGVLNM------VINGQFFQSKYPTLISSTMN--SIIETASSQSIANLKNDYV 880
Query: 453 DIENILE---YDAAYSKLTFAADKEEYDPLSDI 482
D++N+ E + + +SKL ++K +DPL +I
Sbjct: 881 DLDNLEEISTFGSHFSKLVSISEK-PFDPLPEI 912
>pdb|1Z3H|A Chain A, The Exportin Cse1 In Its Cargo-free, Cytoplasmic State
pdb|1Z3H|B Chain B, The Exportin Cse1 In Its Cargo-free, Cytoplasmic State
Length = 968
Score = 187 bits (475), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 148/513 (28%), Positives = 248/513 (48%), Gaps = 66/513 (12%)
Query: 16 KYKDTAIYLVTSLASQGSTVKHGTTKSSTLVNLEDFAQQHIFPELNKPDELCPNELLSPH 75
K+KD IYL T+LA G+ G + ++ L+N+ DF + I P+L + P+ +L
Sbjct: 420 KFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNN--IPHIILRVD 477
Query: 76 LKQIFVLLFQRLSSSKTAKYSKV--SHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLV- 132
+ +L+ ++ + + + L++ VV++YA+ I+++L +R N +
Sbjct: 478 AIKYIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIF 537
Query: 133 TADVLAPLAADLYKNLLVIFTRPGSE-----ENEYAMKCIMRSMSTLQDKVVPYLSDLLF 187
+ ++ L KNL+ + + GS ENE+ M+ I R + T +D + P LL
Sbjct: 538 HKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLA 597
Query: 188 QLTQRLAAAAKNPSKPNYNHFLFEAITLAIRIVCKQNPEAVATFEQALFPIFQVIIQQDT 247
Q + + AKNPS P + H+ FE+I + +QN + ++ P F + +D
Sbjct: 598 QFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQN---LPLLVDSMMPTFLTVFSEDI 654
Query: 248 LEFLPYTFQILSLLLEFRPRGSISAPYLELYPFLLSPVLWSRPGNIHPLVRLLRAFITKS 307
EF+PY FQI++ ++E +I L LL+P +W GNI + RLL++FI K+
Sbjct: 655 QEFIPYVFQIIAFVVE--QSATIPESIKPLAQPLLAPNVWELKGNIPAVTRLLKSFI-KT 711
Query: 308 EPSQFSATLKLNNVLGVFQKLIASK----------------------------IFVLLFQ 339
+ S F L VLG+FQ+LIASK I VLL Q
Sbjct: 712 DSSIFP---DLVPVLGIFQRLIASKAYEVHGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQ 768
Query: 340 RLSSSKTAKYSKGLVTFLMFYVINMGATSLIQLIDSIQGSLFSMVAEKLILADLQKVSGA 399
RL +SKT +Y K L F +G+ LI ID +Q LF + I+ L +
Sbjct: 769 RLQNSKTERYVKKLTVFFGLISNKLGSDFLIHFIDEVQDGLFQQIWGNFIITTLPTIGNL 828
Query: 400 VNRKIAAFGLAKLLTEAKEVTEGPYVQAP---LTGALLNLIQLPEDDSTQP----EDHFV 452
++RKIA G+ + V G + Q+ L + +N + E S+Q ++ +V
Sbjct: 829 LDRKIALIGVLNM------VINGQFFQSKYPTLISSTMN--SIIETASSQSIANLKNDYV 880
Query: 453 DIENILE---YDAAYSKLTFAADKEEYDPLSDI 482
D++N+ E + + +SKL ++K +DPL +I
Sbjct: 881 DLDNLEEISTFGSHFSKLVSISEK-PFDPLPEI 912
>pdb|1MCO|H Chain H, Three-Dimensional Structure Of A Human Immunoglobulin With
A Hinge Deletion
Length = 428
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 5/47 (10%)
Query: 87 LSSSKTAKYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVT 133
+++SK YSK+S + +A V+ A RV ++ +P GQGTLVT
Sbjct: 73 VNTSKNQFYSKLSSVTAADTAVYYCA-----RVPLVVNPWGQGTLVT 114
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,767,417
Number of Sequences: 62578
Number of extensions: 482416
Number of successful extensions: 964
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 949
Number of HSP's gapped (non-prelim): 7
length of query: 486
length of database: 14,973,337
effective HSP length: 103
effective length of query: 383
effective length of database: 8,527,803
effective search space: 3266148549
effective search space used: 3266148549
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)