Query psy9800
Match_columns 486
No_of_seqs 145 out of 289
Neff 6.4
Searched_HMMs 46136
Date Fri Aug 16 20:02:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9800.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9800hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1992|consensus 100.0 2E-118 4E-123 957.3 32.6 477 1-486 393-919 (960)
2 PF03378 CAS_CSE1: CAS/CSE pro 100.0 7E-102 1E-106 817.6 25.4 366 117-486 1-398 (435)
3 KOG1991|consensus 100.0 1.9E-46 4E-51 410.4 29.5 405 5-438 415-872 (1010)
4 COG5657 CSE1 CAS/CSE protein i 100.0 4.6E-48 1E-52 420.1 13.1 455 7-484 393-906 (947)
5 COG5656 SXM1 Importin, protein 99.9 1.1E-23 2.3E-28 225.9 31.2 375 6-416 414-851 (970)
6 PF08506 Cse1: Cse1; InterPro 99.9 1.5E-25 3.3E-30 233.0 8.3 110 1-116 242-370 (370)
7 KOG1993|consensus 99.1 2.2E-08 4.8E-13 109.9 26.6 362 16-416 459-866 (978)
8 KOG2274|consensus 98.5 3.4E-05 7.3E-10 86.5 26.3 335 47-416 445-836 (1005)
9 KOG2171|consensus 97.5 0.01 2.2E-07 68.8 20.4 187 6-220 350-551 (1075)
10 KOG2171|consensus 95.9 1.1 2.4E-05 52.7 21.8 196 82-290 147-365 (1075)
11 PF01602 Adaptin_N: Adaptin N 95.9 1.4 3.1E-05 47.6 21.9 102 47-174 75-179 (526)
12 KOG1241|consensus 95.7 0.14 3.1E-06 57.5 13.2 162 94-264 408-604 (859)
13 KOG1824|consensus 95.3 4.1 8.8E-05 47.5 22.9 323 21-379 194-623 (1233)
14 COG5215 KAP95 Karyopherin (imp 94.8 0.98 2.1E-05 49.7 15.6 195 92-332 408-609 (858)
15 KOG2023|consensus 94.6 5.6 0.00012 44.8 20.9 183 1-219 386-592 (885)
16 KOG1240|consensus 94.1 0.23 5E-06 58.4 9.7 237 92-340 462-776 (1431)
17 PF03378 CAS_CSE1: CAS/CSE pro 93.9 3.3 7.2E-05 44.7 17.5 215 93-332 27-255 (435)
18 KOG0213|consensus 93.8 8.3 0.00018 44.0 20.3 211 94-332 718-938 (1172)
19 KOG1992|consensus 93.3 16 0.00035 42.2 21.9 74 94-177 550-628 (960)
20 PTZ00429 beta-adaptin; Provisi 92.8 16 0.00035 42.2 21.7 61 53-122 107-170 (746)
21 PF01602 Adaptin_N: Adaptin N 92.6 4.3 9.3E-05 43.9 16.2 180 47-265 110-298 (526)
22 PF10274 ParcG: Parkin co-regu 90.7 7.9 0.00017 37.0 13.6 90 88-190 34-130 (183)
23 PF14500 MMS19_N: Dos2-interac 89.7 24 0.00053 35.5 19.0 233 56-376 4-251 (262)
24 PF08167 RIX1: rRNA processing 89.1 2.7 5.8E-05 39.2 9.2 136 47-192 21-163 (165)
25 PF10508 Proteasom_PSMB: Prote 88.7 24 0.00052 38.8 17.6 189 48-263 35-231 (503)
26 KOG2022|consensus 88.7 55 0.0012 38.3 22.9 140 94-245 551-713 (982)
27 KOG1242|consensus 88.4 15 0.00032 40.9 15.4 80 8-105 259-346 (569)
28 COG5096 Vesicle coat complex, 88.4 24 0.00052 40.7 17.5 62 53-123 94-158 (757)
29 KOG1062|consensus 87.0 66 0.0014 37.3 23.7 195 45-284 101-301 (866)
30 KOG2023|consensus 86.2 3.1 6.7E-05 46.7 8.6 110 92-220 434-548 (885)
31 COG5181 HSH155 U2 snRNP splice 84.8 45 0.00098 37.7 16.5 253 47-332 474-743 (975)
32 PF02985 HEAT: HEAT repeat; I 83.5 1.3 2.9E-05 29.3 2.8 28 94-121 2-29 (31)
33 PF10521 DUF2454: Protein of u 82.1 52 0.0011 33.2 15.2 190 46-245 41-276 (282)
34 KOG1058|consensus 81.3 12 0.00025 42.9 10.6 90 53-164 101-195 (948)
35 PF12755 Vac14_Fab1_bd: Vacuol 81.0 4 8.7E-05 34.8 5.6 53 92-154 27-79 (97)
36 smart00802 UME Domain in UVSB 81.0 32 0.0007 29.9 11.3 96 135-243 3-102 (107)
37 PF12719 Cnd3: Nuclear condens 80.7 68 0.0015 32.5 17.2 178 43-247 19-210 (298)
38 KOG2274|consensus 80.6 41 0.0009 39.3 14.8 123 138-266 590-721 (1005)
39 PF01603 B56: Protein phosphat 79.8 40 0.00087 36.1 14.0 173 142-332 132-309 (409)
40 PF12717 Cnd1: non-SMC mitotic 78.4 58 0.0013 30.4 14.8 102 84-204 17-118 (178)
41 PF08167 RIX1: rRNA processing 78.1 50 0.0011 30.7 12.5 131 138-277 20-156 (165)
42 PF08064 UME: UME (NUC010) dom 77.8 38 0.00082 29.2 10.8 78 135-219 3-84 (107)
43 KOG0212|consensus 77.8 1.3E+02 0.0027 33.9 18.0 196 79-305 234-447 (675)
44 PF11865 DUF3385: Domain of un 76.4 44 0.00095 31.0 11.6 40 141-184 8-47 (160)
45 PF03224 V-ATPase_H_N: V-ATPas 74.7 32 0.0007 35.1 11.2 53 235-303 147-203 (312)
46 PF05804 KAP: Kinesin-associat 70.4 94 0.002 35.9 14.4 145 94-266 292-441 (708)
47 PF12348 CLASP_N: CLASP N term 70.0 83 0.0018 30.0 12.3 151 94-264 55-207 (228)
48 PF00514 Arm: Armadillo/beta-c 67.3 6.1 0.00013 27.6 2.8 26 94-119 14-39 (41)
49 cd00020 ARM Armadillo/beta-cat 63.3 60 0.0013 26.7 8.8 73 93-178 8-80 (120)
50 PF13513 HEAT_EZ: HEAT-like re 62.2 7.4 0.00016 28.8 2.6 28 92-119 28-55 (55)
51 PF11865 DUF3385: Domain of un 62.1 25 0.00055 32.6 6.6 72 144-220 87-159 (160)
52 KOG1077|consensus 61.6 1.9E+02 0.0042 33.4 14.1 147 53-219 148-320 (938)
53 PF13646 HEAT_2: HEAT repeats; 61.4 79 0.0017 24.9 9.1 87 94-214 1-88 (88)
54 cd00020 ARM Armadillo/beta-cat 59.0 1E+02 0.0022 25.3 10.8 52 210-262 67-119 (120)
55 KOG1241|consensus 58.7 3.5E+02 0.0076 31.5 21.4 165 94-264 451-627 (859)
56 PF12726 SEN1_N: SEN1 N termin 57.6 3.5E+02 0.0076 31.2 21.2 65 48-121 79-149 (727)
57 PF12717 Cnd1: non-SMC mitotic 56.6 1.7E+02 0.0037 27.2 11.5 84 47-148 21-110 (178)
58 PF10363 DUF2435: Protein of u 55.7 91 0.002 26.3 8.3 66 94-174 5-70 (92)
59 PLN03200 cellulose synthase-in 53.2 5.6E+02 0.012 33.6 17.7 180 94-300 653-840 (2102)
60 KOG1248|consensus 52.9 5.1E+02 0.011 31.6 16.4 178 199-407 748-934 (1176)
61 KOG0915|consensus 52.6 5.8E+02 0.013 32.2 20.4 354 16-471 972-1364(1702)
62 cd08050 TAF6 TATA Binding Prot 52.4 66 0.0014 33.6 8.5 111 84-208 202-329 (343)
63 PLN03200 cellulose synthase-in 51.3 1.1E+02 0.0023 39.7 11.2 148 94-266 490-641 (2102)
64 KOG1824|consensus 51.1 50 0.0011 39.0 7.7 127 162-313 174-315 (1233)
65 PF08064 UME: UME (NUC010) dom 50.9 97 0.0021 26.7 8.0 101 178-288 5-106 (107)
66 cd00256 VATPase_H VATPase_H, r 49.2 3.8E+02 0.0083 29.1 17.1 77 207-302 119-196 (429)
67 KOG1949|consensus 48.9 3E+02 0.0064 32.0 13.0 153 94-261 176-329 (1005)
68 PF08767 CRM1_C: CRM1 C termin 48.6 2.6E+02 0.0055 28.9 12.1 122 137-265 69-196 (319)
69 KOG2021|consensus 47.7 1E+02 0.0022 35.8 9.2 93 140-243 692-786 (980)
70 PF03715 Noc2: Noc2p family; 47.6 3.2E+02 0.0068 28.1 12.4 118 162-283 32-157 (299)
71 PF05004 IFRD: Interferon-rela 47.3 3.4E+02 0.0073 27.9 14.9 125 94-229 45-170 (309)
72 KOG0166|consensus 46.5 4.6E+02 0.0099 29.2 19.6 45 79-124 92-142 (514)
73 KOG1248|consensus 44.5 6.8E+02 0.015 30.6 20.2 167 94-266 520-710 (1176)
74 PF12348 CLASP_N: CLASP N term 43.9 2.9E+02 0.0063 26.2 11.5 110 20-154 72-188 (228)
75 PRK09687 putative lyase; Provi 42.9 2.8E+02 0.0061 28.0 11.2 64 91-176 158-221 (280)
76 PF03224 V-ATPase_H_N: V-ATPas 40.2 1.8E+02 0.004 29.5 9.5 142 93-249 106-254 (312)
77 KOG3682|consensus 40.0 6.5E+02 0.014 29.2 15.1 34 296-330 564-597 (930)
78 COG5215 KAP95 Karyopherin (imp 39.6 2.3E+02 0.005 32.1 10.3 65 199-265 668-732 (858)
79 PF08161 NUC173: NUC173 domain 39.3 73 0.0016 30.7 6.0 38 270-309 147-184 (198)
80 PRK14752 delta-hemolysin; Prov 39.0 63 0.0014 23.0 3.9 31 167-197 5-35 (44)
81 KOG4653|consensus 39.0 6.2E+02 0.014 30.0 13.8 174 94-293 729-903 (982)
82 PF11935 DUF3453: Domain of un 38.1 4E+02 0.0087 26.2 14.8 143 94-264 45-212 (239)
83 PF10508 Proteasom_PSMB: Prote 38.0 5.8E+02 0.013 28.0 14.6 32 93-124 120-151 (503)
84 PF12719 Cnd3: Nuclear condens 37.1 3.8E+02 0.0083 27.0 11.2 97 92-201 114-210 (298)
85 smart00185 ARM Armadillo/beta- 36.8 43 0.00093 22.4 3.0 27 94-120 14-40 (41)
86 KOG2256|consensus 36.7 7E+02 0.015 28.6 16.7 173 79-266 271-457 (661)
87 cd08050 TAF6 TATA Binding Prot 36.6 5.2E+02 0.011 27.0 12.7 83 160-244 230-319 (343)
88 PF13646 HEAT_2: HEAT repeats; 35.6 29 0.00064 27.5 2.3 45 74-119 14-58 (88)
89 PF10274 ParcG: Parkin co-regu 35.5 4.1E+02 0.0088 25.5 10.5 72 136-219 35-110 (183)
90 PF12460 MMS19_C: RNAPII trans 34.5 5.9E+02 0.013 27.0 14.2 155 109-283 250-413 (415)
91 PF12755 Vac14_Fab1_bd: Vacuol 34.4 1.2E+02 0.0026 25.8 5.9 56 135-190 19-74 (97)
92 COG5657 CSE1 CAS/CSE protein i 32.9 2.5E+02 0.0054 33.2 9.6 181 90-291 531-727 (947)
93 KOG1020|consensus 32.9 1.1E+03 0.025 29.8 15.9 99 205-306 1050-1151(1692)
94 KOG1062|consensus 32.1 1.9E+02 0.004 33.8 8.4 153 94-284 109-282 (866)
95 PF05804 KAP: Kinesin-associat 31.4 8.9E+02 0.019 28.2 18.0 109 196-332 498-609 (708)
96 PF08579 RPM2: Mitochondrial r 30.5 63 0.0014 28.8 3.5 52 289-341 53-114 (120)
97 COG5656 SXM1 Importin, protein 30.4 9.6E+02 0.021 28.2 17.6 205 183-414 407-622 (970)
98 PF04388 Hamartin: Hamartin pr 29.1 5.5E+02 0.012 29.5 11.7 81 207-289 83-165 (668)
99 PF01603 B56: Protein phosphat 28.8 7.4E+02 0.016 26.5 15.1 58 251-312 192-253 (409)
100 KOG1525|consensus 28.2 1.3E+03 0.027 28.9 21.3 77 133-219 42-129 (1266)
101 PF08767 CRM1_C: CRM1 C termin 27.5 5.3E+02 0.011 26.6 10.4 105 182-290 65-175 (319)
102 PF15059 Speriolin_C: Sperioli 27.2 1.8E+02 0.0039 26.8 5.9 69 134-206 73-145 (146)
103 PF10521 DUF2454: Protein of u 26.3 5.4E+02 0.012 25.9 10.1 105 94-203 168-280 (282)
104 PF06580 His_kinase: Histidine 25.9 1.1E+02 0.0023 25.0 4.0 50 198-252 6-55 (82)
105 PF11864 DUF3384: Domain of un 25.5 8.8E+02 0.019 26.3 14.8 37 183-219 171-207 (464)
106 cd07920 Pumilio Pumilio-family 25.5 6.9E+02 0.015 25.0 15.0 77 105-199 50-126 (322)
107 KOG0213|consensus 24.7 2.6E+02 0.0055 32.7 7.7 118 41-180 989-1111(1172)
108 cd07439 FANCE_c-term Fanconi a 24.2 1.3E+02 0.0028 30.3 5.0 177 137-368 35-225 (254)
109 PF14225 MOR2-PAG1_C: Cell mor 23.9 3.9E+02 0.0085 26.9 8.4 38 229-266 183-220 (262)
110 KOG1058|consensus 22.1 8.3E+02 0.018 28.7 11.1 39 79-117 228-268 (948)
111 KOG1222|consensus 21.8 8.7E+02 0.019 27.2 10.7 112 193-331 509-622 (791)
112 PF04118 Dopey_N: Dopey, N-ter 20.7 5.3E+02 0.011 26.7 8.8 110 45-178 52-169 (307)
113 KOG1060|consensus 20.6 1.6E+02 0.0035 34.3 5.2 84 91-191 428-511 (968)
114 KOG2549|consensus 20.2 1.3E+03 0.027 26.1 14.1 145 86-251 199-356 (576)
No 1
>KOG1992|consensus
Probab=100.00 E-value=1.7e-118 Score=957.32 Aligned_cols=477 Identities=43% Similarity=0.708 Sum_probs=461.2
Q ss_pred ChhhHHHHHHHHHhh-------------hhhhHHHHHHHHHhhcccccccccccccccccHHHHHHHhhccccCCCCCCC
Q psy9800 1 MEDKMMGTFGAYVEI-------------KYKDTAIYLVTSLASQGSTVKHGTTKSSTLVNLEDFAQQHIFPELNKPDELC 67 (486)
Q Consensus 1 fe~~vt~i~~~yi~~-------------r~KD~Ai~Lv~sla~~~~t~~~Gvt~~n~lv~v~~ff~~~V~PeL~~~~~~~ 67 (486)
||++||+|++.|++. |.||.||||++|+|+||.|+++|||+||++||+.+||.++|+|||.+|++
T Consensus 393 fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~v-- 470 (960)
T KOG1992|consen 393 FEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNV-- 470 (960)
T ss_pred hcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCcc--
Confidence 799999999999998 89999999999999999999999999999999999999999999999987
Q ss_pred CCccccchhhh---hhHhhccCCcchhhH---HHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhH
Q psy9800 68 PNELLSPHLKQ---IFVLLFQRLSSSKTA---KYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLA 141 (486)
Q Consensus 68 ~~~~~~piLka---Ky~~~FRn~l~~~~l---lp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~ 141 (486)
+++ |+||| ||+++||||++++++ +|.++++|.+++.|||+|||+||||+|.+++++ +..+|+++++.|+.
T Consensus 471 -n~~--pilka~aIKy~~~FR~ql~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~-~~~if~~~~iap~~ 546 (960)
T KOG1992|consen 471 -NEF--PILKADAIKYIYTFRNQLGKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENS-NAKIFGAEDIAPFV 546 (960)
T ss_pred -ccc--cchhhcccceeeeecccCChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCc-cccccchhhcchHH
Confidence 887 99999 999999999999999 999999999999999999999999999999976 77899999999999
Q ss_pred HHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHH
Q psy9800 142 ADLYKNLLVIFTRPGSEENEYAMKCIMRSMSTLQDKVVPYLSDLLFQLTQRLAAAAKNPSKPNYNHFLFEAITLAIRIVC 221 (486)
Q Consensus 142 ~~lL~~Lf~li~~~~~~eNeylmk~imRii~~~~e~i~p~~~~l~~~L~~il~~v~kNpsnp~f~hylFEsi~~lir~~~ 221 (486)
..+++|||+.+..|++.||||+||||||++.+.++++.|+++.++.+|++++.+++|||+||+||||+||++|+++|++|
T Consensus 547 ~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~ 626 (960)
T KOG1992|consen 547 EILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTC 626 (960)
T ss_pred HHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCchHHHHHHHHhhHHHHHHhccccchhhhhHHHHHHHHHhhCCCCCCChhHHHhhhhhcCccccCCCCCccchhHHHH
Q psy9800 222 KQNPEAVATFEQALFPIFQVIIQQDTLEFLPYTFQILSLLLEFRPRGSISAPYLELYPFLLSPVLWSRPGNIHPLVRLLR 301 (486)
Q Consensus 222 ~~~p~~~~~~E~~L~P~~~~IL~~dv~EF~pYvfQIls~lle~~~~~~is~~y~~L~~~Ll~p~lWe~~gnip~lvrlL~ 301 (486)
+.+|+++++||.+|||+|+.||++|++||+|||||++|+++|.+.+ ++|+.||++||+|++|.+|+++||+||++|||+
T Consensus 627 ~~~~~~vs~~e~aL~p~fq~Il~eDI~EfiPYvfQlla~lve~~~~-~ip~~~~~l~~~lLsp~lW~r~gNipalvrLl~ 705 (960)
T KOG1992|consen 627 KANPSAVSSLEEALFPVFQTILSEDIQEFIPYVFQLLAVLVEHSSG-TIPDSYSPLFPPLLSPNLWKRSGNIPALVRLLQ 705 (960)
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCchhHHHHHHHhcCHHHHhhcCCcHHHHHHHH
Confidence 9999999999999999999999999999999999999999999886 899999999999999999999999999999999
Q ss_pred HhhcccCccccccccchhHHHHHHHHHHHHH----------------------------HHHHHHHHhhcCCcchhHHHH
Q psy9800 302 AFITKSEPSQFSATLKLNNVLGVFQKLIASK----------------------------IFVLLFQRLSSSKTAKYSKGL 353 (486)
Q Consensus 302 ayi~k~~~~~~~~~~~l~~ilgifqkli~sk----------------------------I~~lll~RLq~~kt~k~~k~~ 353 (486)
||+++ |++.+.+.+++.+|||+||||++|| ||.++|+|+|+|||+||+|+|
T Consensus 706 aflk~-g~~~~~~~~~l~~iLGifqkLiaSka~Dh~GF~LLn~i~~~~~~~~~~py~k~i~~llf~RlqnskT~kf~k~~ 784 (960)
T KOG1992|consen 706 AFLKT-GSQIVEAADKLSGILGIFQKLIASKANDHHGFYLLNTIIESIPPNELAPYMKQIFGLLFQRLQNSKTEKFVKSF 784 (960)
T ss_pred HHHhc-CchhhcccccchhHHHHHHHHhcCcccchhHHHHHHHHHhcCCHhhhhHHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 99999 9999998888999999999999999 899999999999999999999
Q ss_pred HHHHHHHHHhhChHHHHHHHHhhhcchhHHHHHHHhhcccccccCcchhhhHHHHHHHHhhhhccccCCCCCc--hhHHH
Q psy9800 354 VTFLMFYVINMGATSLIQLIDSIQGSLFSMVAEKLILADLQKVSGAVNRKIAAFGLAKLLTEAKEVTEGPYVQ--APLTG 431 (486)
Q Consensus 354 v~f~~~~~~~yg~~~li~~ld~iQ~glf~~i~~~~~lp~~~~~~~~~dRKi~~vgl~~lL~~~~~~~~~~~~~--~~ll~ 431 (486)
++|+|++++++|...+++.+|+||+|+|+|+++++|+|+++++.+..|||++++|.++++++++.++++.|.+ ++++.
T Consensus 785 ~vF~~~~~ik~~~~~l~e~~d~IQ~~~fg~l~e~~ii~~l~~i~~~~~rk~~avg~~~l~~e~~~~~d~~y~~l~~~ll~ 864 (960)
T KOG1992|consen 785 IVFFSLFTIKKGGLMLAEVIDGIQPGMFGMLLENFIIPELPKIILRVDRKIMAVGATGLLTETPELLDQKYAKLWGPLLF 864 (960)
T ss_pred HHHHHHHHHHhhhHHHHHHHhhcchhHHHHHHHHhccccchhhhhhhhHHHHHHHHhhhhhhcHHhhhHHHHhhhhhHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998656776 99999
Q ss_pred HHHHHhcCCCCCCCCCCC-cccchhhhcCCccccccccccccCCCCCCCCCCCCCC
Q psy9800 432 ALLNLIQLPEDDSTQPED-HFVDIENILEYDAAYSKLTFAADKEEYDPLSDIIQVK 486 (486)
Q Consensus 432 ~l~~ll~~p~~~~~~~~~-~~~~~~~~~~y~~~f~~L~~~~~~~~~Dp~~~i~~~~ 486 (486)
.++.++|.|++....+|+ +..+.+++.||+++|+||++|+ +++.||+|+|.|+|
T Consensus 865 sii~lfe~p~~~~~~~e~~e~~~i~e~~~f~~~F~~L~~a~-~k~~Dpl~~i~~~k 919 (960)
T KOG1992|consen 865 SIIVLFELPSERTVLDEEEEMAEIEEDPGFQAAFSRLAYAG-KKPHDPLAQIKDPK 919 (960)
T ss_pred HHHHHHhCChhhhccCchhhhhhhhcccchhHHHHHHHcCC-CCCCCchhhhhhHH
Confidence 999999999997776655 4567778889999999999999 99999999998864
No 2
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=100.00 E-value=6.5e-102 Score=817.62 Aligned_cols=366 Identities=51% Similarity=0.834 Sum_probs=306.8
Q ss_pred HHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHH
Q psy9800 117 DRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEENEYAMKCIMRSMSTLQDKVVPYLSDLLFQLTQRLAAA 196 (486)
Q Consensus 117 erlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~eNeylmk~imRii~~~~e~i~p~~~~l~~~L~~il~~v 196 (486)
||+|.+|+++ |+++|+++|++|+++++|+|||++++.++++||||+||||||++++++|++.|+++.++++|+++++++
T Consensus 1 EriL~~~~~~-~~~~~~~~di~p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v 79 (435)
T PF03378_consen 1 ERILFMKDPN-GQPRFSKADIQPFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEV 79 (435)
T ss_dssp HHHHTHCC-S-SSBSS-GGGTTCCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHH
T ss_pred CceEEEECCC-CCeeECHHHhhhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999976 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCcchhHHHHHHHHHHHHHHhcCchHHHHHHHHhhHHHHHHhccccchhhhhHHHHHHHHHhhCCCCCCChhHHH
Q psy9800 197 AKNPSKPNYNHFLFEAITLAIRIVCKQNPEAVATFEQALFPIFQVIIQQDTLEFLPYTFQILSLLLEFRPRGSISAPYLE 276 (486)
Q Consensus 197 ~kNpsnp~f~hylFEsi~~lir~~~~~~p~~~~~~E~~L~P~~~~IL~~dv~EF~pYvfQIls~lle~~~~~~is~~y~~ 276 (486)
+||||||+||||+|||+|++||++|+++|+.+.+||+.|||+|+.||++||+||+||||||||+|+|.++++++|+.||+
T Consensus 80 ~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~ 159 (435)
T PF03378_consen 80 SKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQ 159 (435)
T ss_dssp HTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGG
T ss_pred HhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999995489999999
Q ss_pred hhhhhcCccccCCCCCccchhHHHHHhhcccCccccccccchhHHHHHHHHHHHHH------------------------
Q psy9800 277 LYPFLLSPVLWSRPGNIHPLVRLLRAFITKSEPSQFSATLKLNNVLGVFQKLIASK------------------------ 332 (486)
Q Consensus 277 L~~~Ll~p~lWe~~gnip~lvrlL~ayi~k~~~~~~~~~~~l~~ilgifqkli~sk------------------------ 332 (486)
|||+|++|.+|+++|||||++|||+|||+| +++.+.+++++++|||||||||+||
T Consensus 160 L~~~Ll~p~lWe~~gniPalvrLL~a~i~k-~~~~i~~~~~l~~iLgvFQkLi~sk~~D~~gF~LL~~iv~~~p~~~l~~ 238 (435)
T PF03378_consen 160 LFPPLLSPALWERRGNIPALVRLLQAYIKK-DPSFIVANNQLEPILGVFQKLIASKANDHYGFDLLESIVENLPPEALEP 238 (435)
T ss_dssp GHHHHTSGGGGGSTTTHHHHHHHHHHHHHH-HGGG----S-CHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHS-HHHHGG
T ss_pred HHHHHcCcchhccCCCcCcHHHHHHHHHHh-CchhhcchhhHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHCCHHHHHH
Confidence 999999999999999999999999999999 9999998899999999999999999
Q ss_pred ----HHHHHHHHhhcCCcchhHHHHHHHHHHHHHhhChHHHHHHHHhhhcchhHHHHHHHhhcccccccCcchhhhHHHH
Q psy9800 333 ----IFVLLFQRLSSSKTAKYSKGLVTFLMFYVINMGATSLIQLIDSIQGSLFSMVAEKLILADLQKVSGAVNRKIAAFG 408 (486)
Q Consensus 333 ----I~~lll~RLq~~kt~k~~k~~v~f~~~~~~~yg~~~li~~ld~iQ~glf~~i~~~~~lp~~~~~~~~~dRKi~~vg 408 (486)
||+++|+|||++||+||+|+|++|+|+++++|||+.+++.+|+||+|+|+|+++++|+|+++|++|.+|||+|+||
T Consensus 239 yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vG 318 (435)
T PF03378_consen 239 YLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVG 318 (435)
T ss_dssp GHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhccccCCCCCc--hhHHHHHHHHhcCCCCCCCCCCCcccchhh--hcCCccccccccccccCCCCCCCCCCCC
Q psy9800 409 LAKLLTEAKEVTEGPYVQ--APLTGALLNLIQLPEDDSTQPEDHFVDIEN--ILEYDAAYSKLTFAADKEEYDPLSDIIQ 484 (486)
Q Consensus 409 l~~lL~~~~~~~~~~~~~--~~ll~~l~~ll~~p~~~~~~~~~~~~~~~~--~~~y~~~f~~L~~~~~~~~~Dp~~~i~~ 484 (486)
+|||||+++.+.++ |.. ++++++++++++.|.++..+++|+.++++| +.||+++|+||++|+ ++++||+|+|+|
T Consensus 319 ltkLL~es~~~~~~-~~~~w~~ll~~Ll~ll~~p~~~~~~~~e~~~~~~d~~~~gy~~~fs~L~~a~-~~~~Dp~~~i~d 396 (435)
T PF03378_consen 319 LTKLLCESPAFLSE-YSQLWPPLLEALLKLLERPPEASAADEEDFIDEEDVEDIGYQVSFSKLAFAG-KKPRDPLPEIPD 396 (435)
T ss_dssp HHHHHHSSTTHHHH--CHHHHHHHHHHHHHHHTTSTT-S----S-----------TT-GGG--GGG-------S-TTTTC
T ss_pred HHHHHhccHhhhhH-HHHHHHHHHHHHHHHHcCCccccccccccccccccchhcccchhhHHHHhCC-CCCCCCCCCCCC
Confidence 99999999988764 665 999999999999999887755555554443 459999999999999 999999999998
Q ss_pred CC
Q psy9800 485 VK 486 (486)
Q Consensus 485 ~~ 486 (486)
+|
T Consensus 397 ~~ 398 (435)
T PF03378_consen 397 PK 398 (435)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 3
>KOG1991|consensus
Probab=100.00 E-value=1.9e-46 Score=410.45 Aligned_cols=405 Identities=17% Similarity=0.249 Sum_probs=332.5
Q ss_pred HHHHHHHHHhh-------hhhhHHHHHHHHHhhcccccccccccccc-cccHHHHHHHhhccccCCCCCCCCCccccchh
Q psy9800 5 MMGTFGAYVEI-------KYKDTAIYLVTSLASQGSTVKHGTTKSST-LVNLEDFAQQHIFPELNKPDELCPNELLSPHL 76 (486)
Q Consensus 5 vt~i~~~yi~~-------r~KD~Ai~Lv~sla~~~~t~~~Gvt~~n~-lv~v~~ff~~~V~PeL~~~~~~~~~~~~~piL 76 (486)
+.+|+++|..+ |+||||+++++||++... | .++ .-.++.|.++||+|+|++|.+|+|++. ++.
T Consensus 415 ~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~--K-----~s~~~~~mE~flv~hVfP~f~s~~g~Lrara--c~v 485 (1010)
T KOG1991|consen 415 IVDILTRYKEASPPNKNPRQKDGALRMVGSLASILL--K-----KSPYKSQMEYFLVNHVFPEFQSPYGYLRARA--CWV 485 (1010)
T ss_pred HHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHc--c-----CCchHHHHHHHHHHHhhHhhcCchhHHHHHH--HHH
Confidence 56788888887 999999999999998764 1 122 228999999999999999874444433 333
Q ss_pred hhhhH-hhccCCcchhhHHHHHHhhcc-CCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCC
Q psy9800 77 KQIFV-LLFQRLSSSKTAKYSKVSHLE-SAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTR 154 (486)
Q Consensus 77 kaKy~-~~FRn~l~~~~llp~l~~~L~-~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~ 154 (486)
-.+|. +.|.++....+++.++.++|. |+++||++.||.|++.++...+.+ ++.++|++++++++||+++++
T Consensus 486 l~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~-------~e~~~~hvp~~mq~lL~L~ne 558 (1010)
T KOG1991|consen 486 LSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQA-------DEKVSAHVPPIMQELLKLSNE 558 (1010)
T ss_pred HHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhh-------hhhHhhhhhHHHHHHHHHHHh
Confidence 33777 999999999999999999999 899999999999999999987643 678999999999999999999
Q ss_pred CCCCccHHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHHhcC--CCCC------cchhHHHHHHHHHHHHHHhcCch
Q psy9800 155 PGSEENEYAMKCIMRSMSTLQDKVVPYLSDLLFQLTQRLAAAAKN--PSKP------NYNHFLFEAITLAIRIVCKQNPE 226 (486)
Q Consensus 155 ~~~~eNeylmk~imRii~~~~e~i~p~~~~l~~~L~~il~~v~kN--psnp------~f~hylFEsi~~lir~~~~~~p~ 226 (486)
.|||.|..|+..+++.+.|++.|||.+++++|++++.++..+ ++++ .....+..+|.+++-. ++++|+
T Consensus 559 ---~End~Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s-~e~~p~ 634 (1010)
T KOG1991|consen 559 ---VENDDLTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLS-LENHPE 634 (1010)
T ss_pred ---cchhHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHH-HhccHH
Confidence 999999999999999999999999999999999999999884 4444 3345566666666665 789999
Q ss_pred HHHHHHHHhhHHHHHHhccccchhhhhHHHHHHHHHhhCCCCCCChhHHHhhhhhcCccccCCCC--CccchhHHHHHhh
Q psy9800 227 AVATFEQALFPIFQVIIQQDTLEFLPYTFQILSLLLEFRPRGSISAPYLELYPFLLSPVLWSRPG--NIHPLVRLLRAFI 304 (486)
Q Consensus 227 ~~~~~E~~L~P~~~~IL~~dv~EF~pYvfQIls~lle~~~~~~is~~y~~L~~~Ll~p~lWe~~g--nip~lvrlL~ayi 304 (486)
++.++|+++.|++..||++|++||++.+|+|...++-..+ .|||.||+|++.++. ++...| ++++++++|+||+
T Consensus 635 vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~--~Isp~mW~ll~li~e--~~~~~~~dyf~d~~~~l~N~v 710 (1010)
T KOG1991|consen 635 VLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTFLSK--EISPIMWGLLELILE--VFQDDGIDYFTDMMPALHNYV 710 (1010)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhc--ccCHHHHHHHHHHHH--HHhhhhHHHHHHHHHHHhhhe
Confidence 9999999999999999999999999999999999987777 499999999999999 666665 8999999999999
Q ss_pred cccCccccc-cccchhHHHHHHHHHHHHH-------------------------------HHHHHHHHhhcCCcchhHHH
Q psy9800 305 TKSEPSQFS-ATLKLNNVLGVFQKLIASK-------------------------------IFVLLFQRLSSSKTAKYSKG 352 (486)
Q Consensus 305 ~k~~~~~~~-~~~~l~~ilgifqkli~sk-------------------------------I~~lll~RLq~~kt~k~~k~ 352 (486)
++ |+..+. ++.|++.++.|+++++.++ ++.+.+.|++.-+++...|.
T Consensus 711 t~-g~~~~~s~~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg~~dq~iplf~~~a~~~l~~~~e~s~~~~ 789 (1010)
T KOG1991|consen 711 TY-GTPSLLSNPDYLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKGLLDQYIPLFLELALSRLTREVETSELRV 789 (1010)
T ss_pred ee-CchhhhccchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcCcHhhHhHHHHHHHHHHHhccccchHHHH
Confidence 99 999888 5689999999999999996 78888889886444454455
Q ss_pred HHHHHHHHHHhhChHHHHHHHHhhhcchhHHHHHHHhhcccccccCcchhhhHHHHHHHHhhhhccccCCCCCc-hhHHH
Q psy9800 353 LVTFLMFYVINMGATSLIQLIDSIQGSLFSMVAEKLILADLQKVSGAVNRKIAAFGLAKLLTEAKEVTEGPYVQ-APLTG 431 (486)
Q Consensus 353 ~v~f~~~~~~~yg~~~li~~ld~iQ~glf~~i~~~~~lp~~~~~~~~~dRKi~~vgl~~lL~~~~~~~~~~~~~-~~ll~ 431 (486)
++.-+..-+..|||..+++++++.+ +-..++. .|.....++.+.||||+|++|++++++..+.-.-. -.. +++..
T Consensus 790 ~~leVvinalyynP~ltL~iLe~~~--~~~~ff~-~wf~~~~~~~~~HDkKlcvL~l~tli~l~~~~~~~-~e~l~~l~~ 865 (1010)
T KOG1991|consen 790 MLLEVVINALYYNPKLTLGILENQG--FLNNFFT-LWFQFINQFKKVHDKKLCVLGLLTLISLGQDPQLP-SEVLGQLGP 865 (1010)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHcC--CcccHHH-HHHHHHHHHHhhhhHHHHHHHHHHHHhccccCCch-HHHHHHHHH
Confidence 5554444455699999999999965 2222222 56677777777999999999999999974321100 012 67777
Q ss_pred HHHHHhc
Q psy9800 432 ALLNLIQ 438 (486)
Q Consensus 432 ~l~~ll~ 438 (486)
+++.++.
T Consensus 866 ~lv~L~~ 872 (1010)
T KOG1991|consen 866 ALVELLL 872 (1010)
T ss_pred HHHHHHH
Confidence 7777653
No 4
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=100.00 E-value=4.6e-48 Score=420.14 Aligned_cols=455 Identities=26% Similarity=0.326 Sum_probs=382.5
Q ss_pred HHHHHHHhh---------hhhhHHHHHHHHHhhcccccccccccccccccHHHHHHHhhccccCCCCCCCCCccccchhh
Q psy9800 7 GTFGAYVEI---------KYKDTAIYLVTSLASQGSTVKHGTTKSSTLVNLEDFAQQHIFPELNKPDELCPNELLSPHLK 77 (486)
Q Consensus 7 ~i~~~yi~~---------r~KD~Ai~Lv~sla~~~~t~~~Gvt~~n~lv~v~~ff~~~V~PeL~~~~~~~~~~~~~piLk 77 (486)
+++..|+.. +.||-|+++++++|.+| -|+++++.++|+++|+.+.+.||+.+|.. . +.+|
T Consensus 393 ~i~~~~~~~~ie~~~t~P~~~d~~~~~~a~~a~~g----~g~~av~~~~~~v~~~~~~~~pd~~s~~~-----~--~~~r 461 (947)
T COG5657 393 RIAVGHELTVIESEATTPNILDEARQLFAAYASFG----LGVEAVNRMVDFVKFLGSIIYPDLLSPNE-----I--IHLR 461 (947)
T ss_pred hHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHHhcCccccCccc-----C--ceeE
Confidence 455555554 78999999999999999 49999999999999999999999999742 3 3344
Q ss_pred h-----hhHhhccCCcchhhHHHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhh-hHHHHHHHHHHh
Q psy9800 78 Q-----IFVLLFQRLSSSKTAKYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAP-LAADLYKNLLVI 151 (486)
Q Consensus 78 a-----Ky~~~FRn~l~~~~llp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p-~~~~lL~~Lf~l 151 (486)
. +|+++||+++...++ ...+.|.++.+++++|||+....+|+.++. ...+|++-+..+ +-..+++|++.+
T Consensus 462 i~~~~i~~i~~~r~~l~~~~~--~~~~fl~~~~F~~yt~~~id~~~lLT~~~a--~~t~~~~~n~~~~~~~~~lenl~~l 537 (947)
T COG5657 462 ILRSRIAYILTFRNQLDSSEL--SESKFLASQFFVNYTTACIDAVVLLTTREA--YSTIFDDWNFSVCSKIGLLENLILL 537 (947)
T ss_pred Eehhccchheechhhhhhhhh--hhHHHHHHHHHHHHHHHhhhhHHHHHHHHH--HHHHHHhcccccccccccHHHHHHH
Confidence 3 999999999999888 667789999999999999999999999985 556777877776 666777777766
Q ss_pred h----CCCC-CCccHHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHhcCch
Q psy9800 152 F----TRPG-SEENEYAMKCIMRSMSTLQDKVVPYLSDLLFQLTQRLAAAAKNPSKPNYNHFLFEAITLAIRIVCKQNPE 226 (486)
Q Consensus 152 i----~~~~-~~eNeylmk~imRii~~~~e~i~p~~~~l~~~L~~il~~v~kNpsnp~f~hylFEsi~~lir~~~~~~p~ 226 (486)
+ ..++ ..||+|+|++|+|++..-++.++|.+..+++.|.++....+|||++|.|.||+||+|+.+++.....-+.
T Consensus 538 vl~~~as~~~~~e~~~ll~~i~rii~~~~~~i~pl~~~il~~L~~lv~~~~knps~p~~~h~~fe~I~al~~~~~~~~~~ 617 (947)
T COG5657 538 VLSLMASPSSLEEREFLLQLISRIIIIDPELIAPLGSEILQLLDNLVEINAKNPSNPQFAHYTFEDIGALVFLKSGMCEI 617 (947)
T ss_pred HHHhcCCcchhHHHHHHHHHHHHHHHhCHHhhhhhHHHHHHHHHHHHHHHccCCccHHHHHHHHHHHHHHHHhhhccccc
Confidence 5 3344 3799999999999999999999999999999999999999999999999999999999999984333445
Q ss_pred HHHHHHHHhhHHHHHHhccccchhhhhHHHHHHHHHhhCCCCCCChhHHHhhhhhcCccccCCCCCccchhHHHHHhhcc
Q psy9800 227 AVATFEQALFPIFQVIIQQDTLEFLPYTFQILSLLLEFRPRGSISAPYLELYPFLLSPVLWSRPGNIHPLVRLLRAFITK 306 (486)
Q Consensus 227 ~~~~~E~~L~P~~~~IL~~dv~EF~pYvfQIls~lle~~~~~~is~~y~~L~~~Ll~p~lWe~~gnip~lvrlL~ayi~k 306 (486)
..+.++.++.|.|..++.+|+.||+||++|.+|.+.+-.....+|+-+..+..|.++|.+|+.+++||+++|++++.+.+
T Consensus 618 ~ip~l~~~l~p~~~~l~~ed~~El~~~~lq~~s~l~e~f~~~~lp~v~~~l~q~~~~t~ll~~~~~I~~~~~Ll~~~~~~ 697 (947)
T COG5657 618 TIPTLVLALVPEFPVLLSEDATELWSYVLQLLSILPEHFSGDVLPSVVKILRQPSLATELLPTKLEILKSYRLLDNPILT 697 (947)
T ss_pred chHHHHHhhCccchhhhhhhHHHHHHHHHHHHhhcchhhcCCcCchHHHHHhcccCchHHHHHHHHHHHHHHHHHhhhhc
Confidence 68899999999999999999999999999999999887764349999999999999999999999999999999999999
Q ss_pred cCccccccccchhHHHHHHHHHHHHH----------------------------HHHHHHHHhhcCCcchhHHHHHHHHH
Q psy9800 307 SEPSQFSATLKLNNVLGVFQKLIASK----------------------------IFVLLFQRLSSSKTAKYSKGLVTFLM 358 (486)
Q Consensus 307 ~~~~~~~~~~~l~~ilgifqkli~sk----------------------------I~~lll~RLq~~kt~k~~k~~v~f~~ 358 (486)
+++.+.. ...+++||++|+++.++ |+.++++|++++|+++|+.+.+.+++
T Consensus 698 -~~~if~~-s~~~~vL~i~~~ll~~e~~~~~~f~~~~~v~~l~~~~i~~~~v~~i~~lll~rl~ns~~~r~v~~~i~~fs 775 (947)
T COG5657 698 -TGYIFKS-SGFQPVLGILQYLLGSEPHDALCFLNLTVVETLYLENIYEPYVNLIFVLLLSRLKNSKTERFVIKIIHVFS 775 (947)
T ss_pred -ccccccc-cchhhhHHHHHHHHhcchHHHHHHhhHHHHHHhHHHHHHhhcHHHHHHHHHHHhhcccchHHHHHhheeeE
Confidence 8887766 66899999999999998 99999999999999999999999999
Q ss_pred HHHHh----hChHHHHHHHHhhhcchhHHHHHHHhhcccccccCcchhhhHHHHHHHHh-hhhccccCCCCCc-----hh
Q psy9800 359 FYVIN----MGATSLIQLIDSIQGSLFSMVAEKLILADLQKVSGAVNRKIAAFGLAKLL-TEAKEVTEGPYVQ-----AP 428 (486)
Q Consensus 359 ~~~~~----yg~~~li~~ld~iQ~glf~~i~~~~~lp~~~~~~~~~dRKi~~vgl~~lL-~~~~~~~~~~~~~-----~~ 428 (486)
+...+ .|++.+|..+++.|++++.+++.+.+++.-+ +..+.|||+..+|+.+++ +.++..++ |+. -.
T Consensus 776 ~v~~k~~~t~~~dnlI~ki~q~k~i~i~~l~g~~Il~~~~-i~~~~drKi~~ig~snllrt~~~~vls--~~sv~~li~~ 852 (947)
T COG5657 776 LVSFKDSLTVGCDNLISKINQTKNILIVQLYGNWILGFDE-IHDSKDRKIHLIGLSNLLRTLHPEVLS--YVSVTNLIIS 852 (947)
T ss_pred EechhhccccCChHHHHHHHHHHHHHHHHHHhceeeccch-hccHHHHHHHHHhHHhhhhhcCchhhh--HHHHHHHHHH
Confidence 99999 8999999999999999999999988888887 888999999999999999 22344443 342 34
Q ss_pred HHHHHHHHhcCCCCCCCCCCCcccchh-hhcCCccccccccccccCCCCCCCCCCCC
Q psy9800 429 LTGALLNLIQLPEDDSTQPEDHFVDIE-NILEYDAAYSKLTFAADKEEYDPLSDIIQ 484 (486)
Q Consensus 429 ll~~l~~ll~~p~~~~~~~~~~~~~~~-~~~~y~~~f~~L~~~~~~~~~Dp~~~i~~ 484 (486)
+|..+.+..+.+..-....|| ..|+. +..-=+++|+|++... .+ .||+++|++
T Consensus 853 lLsei~et~~~da~i~~~~dd-~~d~~~~~~is~~~f~r~~~~~-~k-~Dp~~~i~~ 906 (947)
T COG5657 853 LLSEIFETASGDAIIYELNDD-YADDWFDGEISAEEFSRLAQLE-FK-VDPVHDIDN 906 (947)
T ss_pred HHHHHHHhccCcceehhhccc-hhhhccccCccHHHHHHHHHhh-cc-CCCccccch
Confidence 455554544444211111111 11111 1111289999999999 77 999999876
No 5
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.1e-23 Score=225.88 Aligned_cols=375 Identities=15% Similarity=0.182 Sum_probs=291.2
Q ss_pred HHHHHHHHhh-------hhhhHHHHHHHHHhhcccccccccccccccc-cHHHHHHHhhccccCCCCCCCCCccccchhh
Q psy9800 6 MGTFGAYVEI-------KYKDTAIYLVTSLASQGSTVKHGTTKSSTLV-NLEDFAQQHIFPELNKPDELCPNELLSPHLK 77 (486)
Q Consensus 6 t~i~~~yi~~-------r~KD~Ai~Lv~sla~~~~t~~~Gvt~~n~lv-~v~~ff~~~V~PeL~~~~~~~~~~~~~piLk 77 (486)
..|+++|-.. |++.||+.++.|+.+-. ++ -++.- -++.|..+||.|+|+++. ++||
T Consensus 414 ~sil~qsaa~psn~dnarq~egalr~lasi~s~i--tk-----~sp~an~me~fiv~hv~P~f~s~y---------gfL~ 477 (970)
T COG5656 414 LSILGQSAATPSNIDNARQAEGALRLLASIKSFI--TK-----MSPAANVMEYFIVNHVIPAFRSNY---------GFLK 477 (970)
T ss_pred HHHHhcccCCCCccccHHHHhhHHHHHHHHHHHh--cc-----CchHHHHHHHHHHHHhhHhhcCcc---------cchH
Confidence 3455555544 99999999999998821 11 12322 578999999999999876 7787
Q ss_pred h-------hhHhhccCCcchhhHHHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHH
Q psy9800 78 Q-------IFVLLFQRLSSSKTAKYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLV 150 (486)
Q Consensus 78 a-------Ky~~~FRn~l~~~~llp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~ 150 (486)
+ +|=..|.+.--.-+++..+.+||.+++.||...||.|++-++...+- ...++.+++..+++|+.
T Consensus 478 Srace~is~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~--------h~k~sahVp~tmekLLs 549 (970)
T COG5656 478 SRACEFISTIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQS--------HEKFSAHVPETMEKLLS 549 (970)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhh--------hHHHHhhhhHHHHHHHH
Confidence 7 45577777665666699999999999999999999999999887642 67788999999999999
Q ss_pred hhCCCCCCccHHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHH----HhcCCCCC--------cchhHHHHHHHHHHH
Q psy9800 151 IFTRPGSEENEYAMKCIMRSMSTLQDKVVPYLSDLLFQLTQRLAA----AAKNPSKP--------NYNHFLFEAITLAIR 218 (486)
Q Consensus 151 li~~~~~~eNeylmk~imRii~~~~e~i~p~~~~l~~~L~~il~~----v~kNpsnp--------~f~hylFEsi~~lir 218 (486)
+-+. -|.|-+..|+.-.+..+.|++.|||.++..+|.+.+.. .-.||+|- ........++.++|-
T Consensus 550 LSn~---feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiL 626 (970)
T COG5656 550 LSNT---FEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMIL 626 (970)
T ss_pred hccc---ccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHH
Confidence 9887 89999999999999999999999999999999985444 45687442 223455555555555
Q ss_pred HHHhcCchHHHHHHHHhhHHHHHHhccccchhhhhHHHHHHHHHhhCCCCCCChhHHHhhhhhcCccccCCC---CCccc
Q psy9800 219 IVCKQNPEAVATFEQALFPIFQVIIQQDTLEFLPYTFQILSLLLEFRPRGSISAPYLELYPFLLSPVLWSRP---GNIHP 295 (486)
Q Consensus 219 ~~~~~~p~~~~~~E~~L~P~~~~IL~~dv~EF~pYvfQIls~lle~~~~~~is~~y~~L~~~Ll~p~lWe~~---gnip~ 295 (486)
. .+..|+++..+|..+.|++.-||.+++.||+-.+++|+.-++-... .|.|.+|.+|+.+..- -... .++.+
T Consensus 627 S-len~p~vLk~le~slypvi~Filkn~i~dfy~Ea~dildg~tf~sk--eI~pimwgi~Ell~~~--l~~~~t~~y~ee 701 (970)
T COG5656 627 S-LENRPLVLKYLEVSLYPVISFILKNEISDFYQEALDILDGYTFMSK--EIEPIMWGIFELLLNL--LIDEITAVYSEE 701 (970)
T ss_pred h-cccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHHH--HhhhhhhHHHHHHHhc--ccccchhhhHHH
Confidence 5 6789999999999999999999999999999999999988876655 5999999999999883 3322 47889
Q ss_pred hhHHHHHhhcccCccccc-cccchhHHHHHHHHHHHHH------------HHHHHHHHhhc-----------------CC
Q psy9800 296 LVRLLRAFITKSEPSQFS-ATLKLNNVLGVFQKLIASK------------IFVLLFQRLSS-----------------SK 345 (486)
Q Consensus 296 lvrlL~ayi~k~~~~~~~-~~~~l~~ilgifqkli~sk------------I~~lll~RLq~-----------------~k 345 (486)
.+.+|.|||.. |...|. ++-|...++.|.++++.|. |.+.+.=-+.. -+
T Consensus 702 ~~~al~nfity-G~~ef~~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln~rd~Ll~qy~plfi~vags~l~ 780 (970)
T COG5656 702 VADALDNFITY-GKTEFMDAGIYGSICSEISKLCLCSEENFLEDFIGVCRIIESLILNIRDELLSQYLPLFISVAGSGLK 780 (970)
T ss_pred HHHHHHHHHHh-CccccccccchhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHHccchhHHhhhHHHHHHHhhhhh
Confidence 99999999999 988888 4568889999999999988 11111111111 11
Q ss_pred cchhHHHHHHHHHHHH---HhhChHHHHHHHHhhhcchhHHHHHHHhhcccccccCcchhhhHHHHHHHHhhhh
Q psy9800 346 TAKYSKGLVTFLMFYV---INMGATSLIQLIDSIQGSLFSMVAEKLILADLQKVSGAVNRKIAAFGLAKLLTEA 416 (486)
Q Consensus 346 t~k~~k~~v~f~~~~~---~~yg~~~li~~ld~iQ~glf~~i~~~~~lp~~~~~~~~~dRKi~~vgl~~lL~~~ 416 (486)
+..-.+-+.+|..-.+ ..+.|.-.++.++. .|....+++ .|+.+++|+.+.||+|+|++++.+++...
T Consensus 781 ~~dElg~~sv~aleliinnli~~P~eTLqiLe~--qg~l~~FF~-~wf~~ipkfkrvhdkKLsvlaIltii~l~ 851 (970)
T COG5656 781 MIDELGPASVYALELIINNLILRPKETLQILEE--QGYLQSFFE-KWFSQIPKFKRVHDKKLSVLAILTIIRLQ 851 (970)
T ss_pred ccccccchhhhHHHHHHHHHhcChHHHHHHHHH--cCcHHHHHH-HHHhcCcchhhhhhhHhHHHHHHHHHHhc
Confidence 1111111222222222 23889999999997 788788888 69999999999999999999999998875
No 6
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=99.92 E-value=1.5e-25 Score=232.98 Aligned_cols=110 Identities=40% Similarity=0.612 Sum_probs=94.3
Q ss_pred ChhhHHHHHHHHHhh-------------hhhhHHHHHHHHHhhcccccccccccccccccHHHHHHHhhccccCCCCCCC
Q psy9800 1 MEDKMMGTFGAYVEI-------------KYKDTAIYLVTSLASQGSTVKHGTTKSSTLVNLEDFAQQHIFPELNKPDELC 67 (486)
Q Consensus 1 fe~~vt~i~~~yi~~-------------r~KD~Ai~Lv~sla~~~~t~~~Gvt~~n~lv~v~~ff~~~V~PeL~~~~~~~ 67 (486)
|+++|++++++||++ |+||+||||++|||+|+.|+++|||++|++|||++||++||+|||+ ++.
T Consensus 242 ~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~-- 318 (370)
T PF08506_consen 242 FEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDV-- 318 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS--
T ss_pred HhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccC--
Confidence 578899999999987 9999999999999999999999999999999999999999999999 554
Q ss_pred CCccccchhhh---hhHhhccCCcchhhH---HHHHHhhccCCCCcHHHHHHHHH
Q psy9800 68 PNELLSPHLKQ---IFVLLFQRLSSSKTA---KYSKVSHLESAHPVVHSYASHAI 116 (486)
Q Consensus 68 ~~~~~~piLka---Ky~~~FRn~l~~~~l---lp~l~~~L~~~~~vV~tyAA~aI 116 (486)
+++ ||||| ||+++|||+++++++ +|.+++||+++++|||||||+||
T Consensus 319 -~~~--piLka~aik~~~~Fr~~l~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 319 -NSH--PILKADAIKFLYTFRNQLPKEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp --S---HHHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred -CCC--cchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 665 99999 999999999999998 99999999999999999999997
No 7
>KOG1993|consensus
Probab=99.13 E-value=2.2e-08 Score=109.94 Aligned_cols=362 Identities=15% Similarity=0.239 Sum_probs=227.9
Q ss_pred hhhhHHHHHHHHHhhcccccccccccccccccHHHHHHHhhccccCCCCCCCCCccccchhhhhhH---hhccCCcchhh
Q psy9800 16 KYKDTAIYLVTSLASQGSTVKHGTTKSSTLVNLEDFAQQHIFPELNKPDELCPNELLSPHLKQIFV---LLFQRLSSSKT 92 (486)
Q Consensus 16 r~KD~Ai~Lv~sla~~~~t~~~Gvt~~n~lv~v~~ff~~~V~PeL~~~~~~~~~~~~~piLkaKy~---~~FRn~l~~~~ 92 (486)
-.||+++-.++--|... +..+|.-++|++...||++..+. +. -|+|=|-+ =.+=+-.-++.
T Consensus 459 L~KDAiYaa~g~~a~~l----------~~~~dF~~Wl~~~llpEl~~~~~---~~---RiiRRRVa~ilg~Wvsvq~~~e 522 (978)
T KOG1993|consen 459 LLKDAIYAAFGLAAYEL----------SNILDFDKWLQEALLPELANDHG---NS---RIIRRRVAWILGQWVSVQQKLE 522 (978)
T ss_pred HHHHHHHHHHHHHHHHH----------HhcCCHHHHHHHhhCHHhhhccc---ch---hHHHHHHHHHHhhhhheechHh
Confidence 45776655554443333 57889999999999999985441 21 23332221 11111111222
Q ss_pred H----HHHHHhhccCC-CCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCcc-HHHHHH
Q psy9800 93 A----KYSKVSHLESA-HPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEEN-EYAMKC 166 (486)
Q Consensus 93 l----lp~l~~~L~~~-~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~eN-eylmk~ 166 (486)
+ ..+..++|.+. +.||+--||-|+.-.+. |-+ |+++...|+.+.+...||+++..-+..+- -++...
T Consensus 523 ~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vD--D~n-----F~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ 595 (978)
T KOG1993|consen 523 LKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVD--DWN-----FSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNL 595 (978)
T ss_pred HHHHHHHHHHHhcCccccceeehHHHHHHHHhhh--hcc-----CChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 2 67778899995 89999999998874433 222 77889999999999999999966332222 178888
Q ss_pred HHHHHHHhhhhhhchHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHhcCchHHHHHHHHhhHHHHHHhccc
Q psy9800 167 IMRSMSTLQDKVVPYLSDLLFQLTQRLAAAAKNPSKPNYNHFLFEAITLAIRIVCKQNPEAVATFEQALFPIFQVIIQQD 246 (486)
Q Consensus 167 imRii~~~~e~i~p~~~~l~~~L~~il~~v~kNpsnp~f~hylFEsi~~lir~~~~~~p~~~~~~E~~L~P~~~~IL~~d 246 (486)
+--++...++.|.|++..+++-|-..-.+.. +.|.-.--+.-++--+++. .++.+. .+=..+.|+++.-- |
T Consensus 596 ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~---~e~lLr~alL~~L~~lV~a-lg~qS~---~~~~fL~pVIel~~--D 666 (978)
T KOG1993|consen 596 LSTLIERVSEHIAPYASTIVQYLPLLWEESE---EEPLLRCALLATLRNLVNA-LGAQSF---EFYPFLYPVIELST--D 666 (978)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhhhc---cCcHHHHHHHHHHHHHHHH-hccCCc---cchHHHHHHHHHhc--C
Confidence 8888899999999999888876655444332 2232222222222222322 334443 23345788776432 3
Q ss_pred cc-----hhhhhHHHHHHHHHhhCCCCCCChhHHHhhhhhcCccccC-CCCCccchhHHHHHhhcccCccccccccchhH
Q psy9800 247 TL-----EFLPYTFQILSLLLEFRPRGSISAPYLELYPFLLSPVLWS-RPGNIHPLVRLLRAFITKSEPSQFSATLKLNN 320 (486)
Q Consensus 247 v~-----EF~pYvfQIls~lle~~~~~~is~~y~~L~~~Ll~p~lWe-~~gnip~lvrlL~ayi~k~~~~~~~~~~~l~~ 320 (486)
+. -+.+-..++-...+.+.+ .++|....|+|+++. .-| +..|.|-....+++|+-- +...|++ +|-..
T Consensus 667 ~~sP~hv~L~EDgmeLW~~~L~n~~--~l~p~ll~L~p~l~~--~iE~ste~L~t~l~Ii~sYilL-d~~~fl~-~y~~~ 740 (978)
T KOG1993|consen 667 PSSPEHVYLLEDGMELWLTTLMNSQ--KLTPELLLLFPHLLY--IIEQSTENLPTVLMIISSYILL-DNTVFLN-DYAFG 740 (978)
T ss_pred CCCCceeehhhhHHHHHHHHHhccc--ccCHHHHHHHHHHHH--HHHhhhhhHHHHHHHHHHHHhh-ccHHHHH-HHHHH
Confidence 32 356666677777788877 499999999999987 444 346999999999999999 7777764 34444
Q ss_pred HHHHHHHHHHHH----------HHHHHH-HH--hhc---C-----------CcchhHHHHHHHHHHHHH--hhChHHHHH
Q psy9800 321 VLGVFQKLIASK----------IFVLLF-QR--LSS---S-----------KTAKYSKGLVTFLMFYVI--NMGATSLIQ 371 (486)
Q Consensus 321 ilgifqkli~sk----------I~~lll-~R--Lq~---~-----------kt~k~~k~~v~f~~~~~~--~yg~~~li~ 371 (486)
++..+-+++..- |+.++. ++ |++ + ...+|-.....++...+- ..||+++..
T Consensus 741 i~k~~~~~l~dvr~egl~avLkiveili~t~~il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~n~~~~ms 820 (978)
T KOG1993|consen 741 IFKKLNDLLDDVRNEGLQAVLKIVEILIKTNPILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLRNPSLFMS 820 (978)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhHHHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhcChHHHHH
Confidence 333333333211 333332 11 110 0 011222222222222221 279999999
Q ss_pred HHHhhh--cchhHHHHHHHhhcccccccCcchhhhHHHHHHHHhhhh
Q psy9800 372 LIDSIQ--GSLFSMVAEKLILADLQKVSGAVNRKIAAFGLAKLLTEA 416 (486)
Q Consensus 372 ~ld~iQ--~glf~~i~~~~~lp~~~~~~~~~dRKi~~vgl~~lL~~~ 416 (486)
.+.... ..+-+++++ .|+--.+.+..+.+||+.++|++++|..+
T Consensus 821 vlqt~~~~d~~~~~li~-~WI~~~~~I~~~k~rKl~~LalsSll~t~ 866 (978)
T KOG1993|consen 821 VLQTKNTYDILIAMLIG-NWILLFDHINHPKDRKLNTLALSSLLRTN 866 (978)
T ss_pred HHHhhhhHHHHHHHHHH-HHHHHcccCCCHHHhhHHHHHHHHHhccC
Confidence 988854 245567766 79999999999999999999999999873
No 8
>KOG2274|consensus
Probab=98.54 E-value=3.4e-05 Score=86.54 Aligned_cols=335 Identities=16% Similarity=0.175 Sum_probs=226.6
Q ss_pred cHHHHHHHhhccccCCCCCCCCCccccc--hhhh-hhHhhccCC--cchhh---HHHHHHhhcc-CCCCcHHHHHHHHHH
Q psy9800 47 NLEDFAQQHIFPELNKPDELCPNELLSP--HLKQ-IFVLLFQRL--SSSKT---AKYSKVSHLE-SAHPVVHSYASHAID 117 (486)
Q Consensus 47 ~v~~ff~~~V~PeL~~~~~~~~~~~~~p--iLka-Ky~~~FRn~--l~~~~---llp~l~~~L~-~~~~vV~tyAA~aIe 117 (486)
|.-++...-+...|..... | ++|| -++-.|-+- .++.- .+...++.+. +...+|++=|..++.
T Consensus 445 d~l~~l~~~~~~~l~~~e~--------P~Ll~Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~ 516 (1005)
T KOG2274|consen 445 DKLIELTIMIDNGLVYQES--------PFLLLRAFLTISKFSSSTVINPQLLQHFLNATVNALTMDVPPPVKISAVRAFC 516 (1005)
T ss_pred HHHHHHHHHHHhhcccccC--------HHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHH
Confidence 6667777777777765442 5 4455 333444333 22222 2666666444 566777777666655
Q ss_pred HHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHHh
Q psy9800 118 RVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEENEYAMKCIMRSMSTLQDKVVPYLSDLLFQLTQRLAAAA 197 (486)
Q Consensus 118 rlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~eNeylmk~imRii~~~~e~i~p~~~~l~~~L~~il~~v~ 197 (486)
... ....+.|..+.+|+.|.++...-++.-+--+|.++--++.+=.+.-...-..+++...+++..
T Consensus 517 ~~~------------~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k-- 582 (1005)
T KOG2274|consen 517 GYC------------KVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLK-- 582 (1005)
T ss_pred hcc------------CceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHH--
Confidence 333 266778999999999988886533333445666666555443343333344566666665554
Q ss_pred cCCCCCcc---hhHHHHHHHHHHHHHHhcCchHHHHHHHHhhHHHHHHhcccc----chhhhhHHHHHHHHHhhCCCCCC
Q psy9800 198 KNPSKPNY---NHFLFEAITLAIRIVCKQNPEAVATFEQALFPIFQVIIQQDT----LEFLPYTFQILSLLLEFRPRGSI 270 (486)
Q Consensus 198 kNpsnp~f---~hylFEsi~~lir~~~~~~p~~~~~~E~~L~P~~~~IL~~dv----~EF~pYvfQIls~lle~~~~~~i 270 (486)
+-+||.- ..=+||-++- ..+-...+-..++|.+-.||+.+. ....--+..+|+-+++.+|+ ++
T Consensus 583 -~s~DP~V~~~~qd~f~el~q--------~~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~-pL 652 (1005)
T KOG2274|consen 583 -YSEDPQVASLAQDLFEELLQ--------IAANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPS-PL 652 (1005)
T ss_pred -hcCCchHHHHHHHHHHHHHH--------HHHhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCC-Cc
Confidence 4445521 1334444333 112235566789999999999998 56667778999999999987 78
Q ss_pred Chh-HHHhhhhhcCccccCCC-CCccchhHHHHHhhcccCcccccc----cc-chhHHHHHHHHHHHHH-----------
Q psy9800 271 SAP-YLELYPFLLSPVLWSRP-GNIHPLVRLLRAFITKSEPSQFSA----TL-KLNNVLGVFQKLIASK----------- 332 (486)
Q Consensus 271 s~~-y~~L~~~Ll~p~lWe~~-gnip~lvrlL~ayi~k~~~~~~~~----~~-~l~~ilgifqkli~sk----------- 332 (486)
|.. +...||++....+...+ +-...-.-+|++||++ +++++.+ ++ .+.-|+.+..+|+.-+
T Consensus 653 ~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~-~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~ 731 (1005)
T KOG2274|consen 653 PNLLICYAFPAVAKITLHSDDHETLQNATECLRALISV-TLEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGP 731 (1005)
T ss_pred cHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhc-CHHHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhH
Confidence 766 78899999998866543 2477788999999999 9988874 12 2446666666766533
Q ss_pred -------------------HHHHHHHHhhcCCcchhHHHHHHHHHHHHHhhChHHHHHHHHhh-hcc---hhHHHHHHHh
Q psy9800 333 -------------------IFVLLFQRLSSSKTAKYSKGLVTFLMFYVINMGATSLIQLIDSI-QGS---LFSMVAEKLI 389 (486)
Q Consensus 333 -------------------I~~lll~RLq~~kt~k~~k~~v~f~~~~~~~yg~~~li~~ld~i-Q~g---lf~~i~~~~~ 389 (486)
|+..+..|+|.-.|-+++++++.-+|..+.. +++-+++++-++ +++ -|+- +-..|
T Consensus 732 lV~tLit~a~~el~~n~d~IL~Avisrmq~ae~lsviQsLi~VfahL~~t-~~~~~l~FL~Slp~~~g~~Alef-VMteW 809 (1005)
T KOG2274|consen 732 LVLTLITHASSELGPNLDQILRAVISRLQQAETLSVIQSLIMVFAHLVHT-DLDQLLNFLSSLPGPTGEPALEF-VMTEW 809 (1005)
T ss_pred HHHHHHHHHHHHhchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhC-CHHHHHHHHHhCCCCCCCcHHHH-HHHHH
Confidence 8899999999888889999998877766654 688899999994 332 3443 34489
Q ss_pred hcccccccCcchhhhHHHHHHHHhhhh
Q psy9800 390 LADLQKVSGAVNRKIAAFGLAKLLTEA 416 (486)
Q Consensus 390 lp~~~~~~~~~dRKi~~vgl~~lL~~~ 416 (486)
...-.-+.|..++|+-+.++|++|+..
T Consensus 810 ~srqhl~~g~ye~kv~i~alc~al~~~ 836 (1005)
T KOG2274|consen 810 TSRQHLYFGEYEGKVSIKALCKALQHL 836 (1005)
T ss_pred HhhhhhhhhhhhchhhHHHHHHHHHhh
Confidence 988888889999999999999998753
No 9
>KOG2171|consensus
Probab=97.45 E-value=0.01 Score=68.76 Aligned_cols=187 Identities=19% Similarity=0.232 Sum_probs=121.0
Q ss_pred HHHHHHHHhh---hhhhHHHHHHHHHhhcccccccccccccccccHHHHHHHhhccccCCCCCCCCCccccchhhh----
Q psy9800 6 MGTFGAYVEI---KYKDTAIYLVTSLASQGSTVKHGTTKSSTLVNLEDFAQQHIFPELNKPDELCPNELLSPHLKQ---- 78 (486)
Q Consensus 6 t~i~~~yi~~---r~KD~Ai~Lv~sla~~~~t~~~Gvt~~n~lv~v~~ff~~~V~PeL~~~~~~~~~~~~~piLka---- 78 (486)
.+-+.+++++ +.+-+|+-.+++++.-.. + .+....+=...+|++-|+.|+ |.+|-
T Consensus 350 ~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~-------~--~m~~~l~~Il~~Vl~~l~Dph---------prVr~AA~n 411 (1075)
T KOG2171|consen 350 FEALEAMLQSTEWKERHAALLALSVIAEGCS-------D--VMIGNLPKILPIVLNGLNDPH---------PRVRYAALN 411 (1075)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHcccH-------H--HHHHHHHHHHHHHHhhcCCCC---------HHHHHHHHH
Confidence 3444555555 888899887777764322 0 111122334467888898765 55554
Q ss_pred ---hhHhhccCCcchhhH---HHHHHhhccC-CCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHh
Q psy9800 79 ---IFVLLFQRLSSSKTA---KYSKVSHLES-AHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVI 151 (486)
Q Consensus 79 ---Ky~~~FRn~l~~~~l---lp~l~~~L~~-~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~l 151 (486)
.+-..|--.+.+..- .|.++..|.+ .+..|+.+||.|+-.+..-- ++.-+.||+..|++.+|..
T Consensus 412 aigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~---------~~~~l~pYLd~lm~~~l~~ 482 (1075)
T KOG2171|consen 412 AIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEEC---------DKSILEPYLDGLMEKKLLL 482 (1075)
T ss_pred HHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhC---------cHHHHHHHHHHHHHHHHHH
Confidence 222444444443322 7788998888 55699999999987666522 4888999999999988888
Q ss_pred hCCCCC-CccHHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHH
Q psy9800 152 FTRPGS-EENEYAMKCIMRSMSTLQDKVVPYLSDLLFQLTQRLAAAAKNPSKPNYNHFLFEAITLAIRIV 220 (486)
Q Consensus 152 i~~~~~-~eNeylmk~imRii~~~~e~i~p~~~~l~~~L~~il~~v~kNpsnp~f~hylFEsi~~lir~~ 220 (486)
+...++ .-=|-++.+|=.|-...++...||...+...|.++++...+....+ -.-.++||++++-+-+
T Consensus 483 L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~-LrgktmEcisli~~AV 551 (1075)
T KOG2171|consen 483 LLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRE-LRGKTMECLSLIARAV 551 (1075)
T ss_pred HhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHH-HHhhHHHHHHHHHHHh
Confidence 866332 1223466666666667788899999888888776665433111111 1255899999988875
No 10
>KOG2171|consensus
Probab=95.92 E-value=1.1 Score=52.67 Aligned_cols=196 Identities=17% Similarity=0.208 Sum_probs=128.7
Q ss_pred hhccCCcch--hhHHHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCc
Q psy9800 82 LLFQRLSSS--KTAKYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEE 159 (486)
Q Consensus 82 ~~FRn~l~~--~~llp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~e 159 (486)
.+|-|++.. ..+.+++.+++.|++-+|+++|+-|+--+...-+. ..+..+....++-+++..+.+--...
T Consensus 147 ~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~--------~~~~~~~~~~llP~~l~vl~~~i~~~ 218 (1075)
T KOG2171|consen 147 ETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLEN--------NKSEVDKFRDLLPSLLNVLQEVIQDG 218 (1075)
T ss_pred hhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhcc--------chHHHHHHHHHhHHHHHHhHhhhhcc
Confidence 667776663 34599999999999989999999999877665531 33444555556666665554422245
Q ss_pred cHHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHHhcCCC-CCcchhHHHHHHHHHHHH---HHhcCchHHHHHHHHh
Q psy9800 160 NEYAMKCIMRSMSTLQDKVVPYLSDLLFQLTQRLAAAAKNPS-KPNYNHFLFEAITLAIRI---VCKQNPEAVATFEQAL 235 (486)
Q Consensus 160 Neylmk~imRii~~~~e~i~p~~~~l~~~L~~il~~v~kNps-np~f~hylFEsi~~lir~---~~~~~p~~~~~~E~~L 235 (486)
++...+-+...+..+-+...++....+..+.+....|++|-+ |+.--|...|.|..++++ .|+.++. +=..|
T Consensus 219 d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~----~~~~l 294 (1075)
T KOG2171|consen 219 DDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLAL----LGHTL 294 (1075)
T ss_pred chHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchh----hhccH
Confidence 666667777777777777777777777777777788888876 667779999999999998 4555543 44556
Q ss_pred hHHHHHHhcccc-------------ch-hhhhHH--HHHHHH-HhhCCCCCCChhHHHhhhhhcCccccCCC
Q psy9800 236 FPIFQVIIQQDT-------------LE-FLPYTF--QILSLL-LEFRPRGSISAPYLELYPFLLSPVLWSRP 290 (486)
Q Consensus 236 ~P~~~~IL~~dv-------------~E-F~pYvf--QIls~l-le~~~~~~is~~y~~L~~~Ll~p~lWe~~ 290 (486)
+|+...+...-. .| =.||++ |.+..+ +.+.++ .+=|...+.++.++.-.-|..+
T Consensus 295 v~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~-~v~p~~~~~l~~~l~S~~w~~R 365 (1075)
T KOG2171|consen 295 VPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGK-QVLPPLFEALEAMLQSTEWKER 365 (1075)
T ss_pred HHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChh-hehHHHHHHHHHHhcCCCHHHH
Confidence 666665543211 12 356654 444433 122233 3445556667777777888744
No 11
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=95.89 E-value=1.4 Score=47.62 Aligned_cols=102 Identities=14% Similarity=0.194 Sum_probs=76.4
Q ss_pred cHHHHHHHhhccccCCCCCCCCCccccchhhh---hhHhhccCCcchhhHHHHHHhhccCCCCcHHHHHHHHHHHHHccc
Q psy9800 47 NLEDFAQQHIFPELNKPDELCPNELLSPHLKQ---IFVLLFQRLSSSKTAKYSKVSHLESAHPVVHSYASHAIDRVLVMR 123 (486)
Q Consensus 47 ~v~~ff~~~V~PeL~~~~~~~~~~~~~piLka---Ky~~~FRn~l~~~~llp~l~~~L~~~~~vV~tyAA~aIerlL~~k 123 (486)
++.-...+.+.-||.+++ |..|+ +++-.+++.--.+.++|.+.++|.|++..|+--||.|+-|+....
T Consensus 75 ~~~~l~~n~l~kdl~~~n---------~~~~~lAL~~l~~i~~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~ 145 (526)
T PF01602_consen 75 ELLILIINSLQKDLNSPN---------PYIRGLALRTLSNIRTPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKD 145 (526)
T ss_dssp HHHHHHHHHHHHHHCSSS---------HHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHhhcCCC---------HHHHHHHHhhhhhhcccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccC
Confidence 466678888888998775 78888 999999977777777999999999999999999999999998863
Q ss_pred CCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHh
Q psy9800 124 SPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEENEYAMKCIMRSMSTL 174 (486)
Q Consensus 124 ~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~eNeylmk~imRii~~~ 174 (486)
++.+.+. ++..+.+++.. .|.-++.+...++...
T Consensus 146 ----------p~~~~~~---~~~~l~~lL~d----~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 146 ----------PDLVEDE---LIPKLKQLLSD----KDPSVVSAALSLLSEI 179 (526)
T ss_dssp ----------HCCHHGG---HHHHHHHHTTH----SSHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHH---HHHHHhhhccC----CcchhHHHHHHHHHHH
Confidence 2333332 45556666643 4456777777777666
No 12
>KOG1241|consensus
Probab=95.72 E-value=0.14 Score=57.45 Aligned_cols=162 Identities=16% Similarity=0.183 Sum_probs=114.6
Q ss_pred HHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCccH-----HHHHHHH
Q psy9800 94 KYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEENE-----YAMKCIM 168 (486)
Q Consensus 94 lp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~eNe-----ylmk~im 168 (486)
+|.+++.+.|++..|+--||+|+-|+...- ...+.+...+++.+.-+++.|=.. |.-..|. .+.++..
T Consensus 408 lp~ii~lm~D~sl~VkdTaAwtlgrI~d~l----~e~~~n~~~l~~~l~~l~~gL~De---Prva~N~CWAf~~Laea~~ 480 (859)
T KOG1241|consen 408 LPSIINLMSDPSLWVKDTAAWTLGRIADFL----PEAIINQELLQSKLSALLEGLNDE---PRVASNVCWAFISLAEAAY 480 (859)
T ss_pred hHHHHHHhcCchhhhcchHHHHHHHHHhhc----hhhcccHhhhhHHHHHHHHHhhhC---chHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998754 234556777777777777766332 2224443 2333333
Q ss_pred HHHHHh--hhhhhchHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHH----------------------Hh--
Q psy9800 169 RSMSTL--QDKVVPYLSDLLFQLTQRLAAAAKNPSKPNYNHFLFEAITLAIRIV----------------------CK-- 222 (486)
Q Consensus 169 Rii~~~--~e~i~p~~~~l~~~L~~il~~v~kNpsnp~f~hylFEsi~~lir~~----------------------~~-- 222 (486)
.....- .+-.-|+...+++.|.+...++..|.+|=|-+ .||+++.+|+++ .+
T Consensus 481 eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~A--AYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~ 558 (859)
T KOG1241|consen 481 EAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSA--AYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQ 558 (859)
T ss_pred HhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHH--HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221111 01233788899999988888777787776544 789999888861 01
Q ss_pred ----cCchHHHHHHHHhhHHHHHHhccccchhhhhHHHHHHHHHhh
Q psy9800 223 ----QNPEAVATFEQALFPIFQVIIQQDTLEFLPYTFQILSLLLEF 264 (486)
Q Consensus 223 ----~~p~~~~~~E~~L~P~~~~IL~~dv~EF~pYvfQIls~lle~ 264 (486)
++.+.+..+++.|..+++.|+++=-.++-+++=||+.+++..
T Consensus 559 ~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri 604 (859)
T KOG1241|consen 559 ILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRI 604 (859)
T ss_pred hccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHH
Confidence 345566778888899999998887778888888888887765
No 13
>KOG1824|consensus
Probab=95.33 E-value=4.1 Score=47.46 Aligned_cols=323 Identities=18% Similarity=0.232 Sum_probs=201.2
Q ss_pred HHHHHHHHhhcccccccccccccccccHHHHHHHhhccccCCCCCCCCCccccchhhh------hhHhhccCCcchhhHH
Q psy9800 21 AIYLVTSLASQGSTVKHGTTKSSTLVNLEDFAQQHIFPELNKPDELCPNELLSPHLKQ------IFVLLFQRLSSSKTAK 94 (486)
Q Consensus 21 Ai~Lv~sla~~~~t~~~Gvt~~n~lv~v~~ff~~~V~PeL~~~~~~~~~~~~~piLka------Ky~~~FRn~l~~~~ll 94 (486)
|+++++.+|..+. + ++-....+|+.-+|.++.. ++..+-..++ .--+.|-+++++ .+
T Consensus 194 ai~~l~~la~~~~--~----------~ly~~li~~Ll~~L~~~~q---~~~~rt~Iq~l~~i~r~ag~r~~~h~~~--iv 256 (1233)
T KOG1824|consen 194 AITALGHLASSCN--R----------DLYVELIEHLLKGLSNRTQ---MSATRTYIQCLAAICRQAGHRFGSHLDK--IV 256 (1233)
T ss_pred HHHHHHHHHHhcC--H----------HHHHHHHHHHHhccCCCCc---hHHHHHHHHHHHHHHHHhcchhhcccch--hh
Confidence 7888999998874 1 5777788999999976642 3221122222 111677777765 78
Q ss_pred HHHHhhc---cCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCC-----C----------
Q psy9800 95 YSKVSHL---ESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRP-----G---------- 156 (486)
Q Consensus 95 p~l~~~L---~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~-----~---------- 156 (486)
|.+.++. ..++-=.+=|.--++|-+|. |. +.++.|+.+.+++-++.-+.-. +
T Consensus 257 p~v~~y~~~~e~~dDELrE~~lQale~fl~-rc---------p~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ 326 (1233)
T KOG1824|consen 257 PLVADYCNKIEEDDDELREYCLQALESFLR-RC---------PKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFL 326 (1233)
T ss_pred HHHHHHhcccccCcHHHHHHHHHHHHHHHH-hC---------hhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhh
Confidence 9999988 44555677788888887765 22 6788899999999999988220 0
Q ss_pred ------CCccHH-------------HHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHH
Q psy9800 157 ------SEENEY-------------AMKCIMRSMSTLQDKVVPYLSDLLFQLTQRLAAAAKNPSKPNYNHFLFEAITLAI 217 (486)
Q Consensus 157 ------~~eNey-------------lmk~imRii~~~~e~i~p~~~~l~~~L~~il~~v~kNpsnp~f~hylFEsi~~li 217 (486)
+.++|| -.||+.-+|..=.|-+..+...+.+.++..+++=-+|=. --.|++.-.+.
T Consensus 327 ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk-----~dvf~~yi~ll 401 (1233)
T KOG1824|consen 327 EDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVK-----ADVFHAYIALL 401 (1233)
T ss_pred hccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHH-----HHHHHHHHHHH
Confidence 012443 468888888866666666677788888887775444321 22556655555
Q ss_pred HHHH-----hcCchH---------HHHHHH---HhhHHHHHHhccccchhhhhHHHHHHHHHhhCCCCCCChhHHHhhhh
Q psy9800 218 RIVC-----KQNPEA---------VATFEQ---ALFPIFQVIIQQDTLEFLPYTFQILSLLLEFRPRGSISAPYLELYPF 280 (486)
Q Consensus 218 r~~~-----~~~p~~---------~~~~E~---~L~P~~~~IL~~dv~EF~pYvfQIls~lle~~~~~~is~~y~~L~~~ 280 (486)
+.+- ..+++. ...+-+ .+.-.++.-+..+-.-=.+-+|..|.-++...|+ .+-+..-.+.|.
T Consensus 402 ~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~-~l~~~~~slvpg 480 (1233)
T KOG1824|consen 402 KQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPG-ALAQHIPSLVPG 480 (1233)
T ss_pred HcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcc-hhhhcccccchh
Confidence 5410 011111 111211 1223333344455555677788888888877775 555555566665
Q ss_pred hcCc-cccCCCCC--ccchhHHHHHhhcccCccccccccchhHHH-------------------HHHHHHHHHH------
Q psy9800 281 LLSP-VLWSRPGN--IHPLVRLLRAFITKSEPSQFSATLKLNNVL-------------------GVFQKLIASK------ 332 (486)
Q Consensus 281 Ll~p-~lWe~~gn--ip~lvrlL~ayi~k~~~~~~~~~~~l~~il-------------------gifqkli~sk------ 332 (486)
+..- +-....+| +.+++++..+.+.. +|+.|.. ++.++. -++|+++.-=
T Consensus 481 I~~~l~DkSsss~~ki~~L~fl~~~L~s~-~p~~fhp--~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~ 557 (1233)
T KOG1824|consen 481 IIYSLNDKSSSSNLKIDALVFLYSALISH-PPEVFHP--HLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPP 557 (1233)
T ss_pred hhhhcCCccchHHHHHHHHHHHHHHHhcC-Chhhccc--chhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCC
Confidence 5442 22222233 88899999999999 9988863 222222 2444444211
Q ss_pred -----------HHHHHHHHhhcCCcchhHH-HHHHHHHHHHHhhC-------hHHHHHHHHhhhcc
Q psy9800 333 -----------IFVLLFQRLSSSKTAKYSK-GLVTFLMFYVINMG-------ATSLIQLIDSIQGS 379 (486)
Q Consensus 333 -----------I~~lll~RLq~~kt~k~~k-~~v~f~~~~~~~yg-------~~~li~~ld~iQ~g 379 (486)
++...++||...-++.-+| +.+--|+.+++.+| |..+.-.+|.+|+.
T Consensus 558 ~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~nE 623 (1233)
T KOG1824|consen 558 SSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGNE 623 (1233)
T ss_pred ccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhch
Confidence 8999999998877777676 45556777777655 44566677777764
No 14
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=94.80 E-value=0.98 Score=49.75 Aligned_cols=195 Identities=16% Similarity=0.143 Sum_probs=106.4
Q ss_pred hHHHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCccHHHHHHHHHHH
Q psy9800 92 TAKYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEENEYAMKCIMRSM 171 (486)
Q Consensus 92 ~llp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~eNeylmk~imRii 171 (486)
+++|.+.+.+.|+.+-|+.-+|+|+-+|=..--.. +=....+.|.....+..| ++-|...-|. -..+|-.+
T Consensus 408 qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~----i~p~~Hl~~~vsa~liGl---~D~p~~~~nc--sw~~~nlv 478 (858)
T COG5215 408 QALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMI----ISPCGHLVLEVSASLIGL---MDCPFRSINC--SWRKENLV 478 (858)
T ss_pred hhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHh----cCccccccHHHHHHHhhh---hccchHHhhh--HHHHHhHH
Confidence 34999999999999999999999999885533110 001233444444444443 2222112221 11122222
Q ss_pred HHhhh-------hhhchHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHhcCchHHHHHHHHhhHHHHHHhc
Q psy9800 172 STLQD-------KVVPYLSDLLFQLTQRLAAAAKNPSKPNYNHFLFEAITLAIRIVCKQNPEAVATFEQALFPIFQVIIQ 244 (486)
Q Consensus 172 ~~~~e-------~i~p~~~~l~~~L~~il~~v~kNpsnp~f~hylFEsi~~lir~~~~~~p~~~~~~E~~L~P~~~~IL~ 244 (486)
..+.+ -+.|+...++..|..-.... .|.+|-+-+ +|+++|++|.+ |. +.+.. ++-.+...++
T Consensus 479 ~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~-~Ne~n~R~s--~fsaLgtli~~-~~---d~V~~---~~a~~~~~~~- 547 (858)
T COG5215 479 DHIAKAVREVESFLAKFYLAILNALVKGTELA-LNESNLRVS--LFSALGTLILI-CP---DAVSD---ILAGFYDYTS- 547 (858)
T ss_pred HhhhhhhccccchhHHHHHHHHHHHHHHHHhh-ccchhHHHH--HHHHHHHHHhh-cc---hhHHH---HHHHHHHHHH-
Confidence 22222 24677788888887766555 888886654 99999999999 42 22221 1222222222
Q ss_pred cccchhhhhHHHHHHHHHhhCCCCCCChhHHHhhhhhcCccccCCCCCccchhHHHHHhhcccCccccccccchhHHHHH
Q psy9800 245 QDTLEFLPYTFQILSLLLEFRPRGSISAPYLELYPFLLSPVLWSRPGNIHPLVRLLRAFITKSEPSQFSATLKLNNVLGV 324 (486)
Q Consensus 245 ~dv~EF~pYvfQIls~lle~~~~~~is~~y~~L~~~Ll~p~lWe~~gnip~lvrlL~ayi~k~~~~~~~~~~~l~~ilgi 324 (486)
+=+..+.+++++.+...-. .+.+-+.+ .+.-+|.|.|++ .+..+-. --.++++.
T Consensus 548 ----~kl~~~isv~~q~l~~eD~--------~~~~elqS-----------N~~~vl~aiir~-~~~~ie~--v~D~lm~L 601 (858)
T COG5215 548 ----KKLDECISVLGQILATEDQ--------LLVEELQS-----------NYIGVLEAIIRT-RRRDIED--VEDQLMEL 601 (858)
T ss_pred ----HHHHHHHHHhhhhhhhHHH--------HHHHHHHH-----------HHHHHHHHHHHh-cCCCccc--HHHHHHHH
Confidence 1133444566655433221 12222222 456678888888 5554432 12347777
Q ss_pred HHHHHHHH
Q psy9800 325 FQKLIASK 332 (486)
Q Consensus 325 fqkli~sk 332 (486)
|=+++.++
T Consensus 602 f~r~les~ 609 (858)
T COG5215 602 FIRILEST 609 (858)
T ss_pred HHHHHhcc
Confidence 77777766
No 15
>KOG2023|consensus
Probab=94.58 E-value=5.6 Score=44.79 Aligned_cols=183 Identities=16% Similarity=0.232 Sum_probs=103.7
Q ss_pred ChhhHHHHHHHHHhh-------hhhhHHHHHHHHHhhcccccccccccccccccHHHHHHHhhccccCCCCCCCCCcccc
Q psy9800 1 MEDKMMGTFGAYVEI-------KYKDTAIYLVTSLASQGSTVKHGTTKSSTLVNLEDFAQQHIFPELNKPDELCPNELLS 73 (486)
Q Consensus 1 fe~~vt~i~~~yi~~-------r~KD~Ai~Lv~sla~~~~t~~~Gvt~~n~lv~v~~ff~~~V~PeL~~~~~~~~~~~~~ 73 (486)
|.+++..++.-+++. +-|++++..+||+|--.- +|.-. .+--+..|+.+. |. ++.
T Consensus 386 f~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM---~g~~p--~LpeLip~l~~~----L~-------DKk-- 447 (885)
T KOG2023|consen 386 FGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCM---QGFVP--HLPELIPFLLSL----LD-------DKK-- 447 (885)
T ss_pred hHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHh---hhccc--chHHHHHHHHHH----hc-------cCc--
Confidence 344555555555554 999999999999996552 12111 011233333322 22 222
Q ss_pred chhhh-------hhH-hhccCCcchhhH---HHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHH
Q psy9800 74 PHLKQ-------IFV-LLFQRLSSSKTA---KYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAA 142 (486)
Q Consensus 74 piLka-------Ky~-~~FRn~l~~~~l---lp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~ 142 (486)
|.+|. +|- +.+... +-+.+ +..+.+.+.|++-=|+-=|+.|.--+ .+.+ .+.+-|++.
T Consensus 448 plVRsITCWTLsRys~wv~~~~-~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtl---eE~A-------~~eLVp~l~ 516 (885)
T KOG2023|consen 448 PLVRSITCWTLSRYSKWVVQDS-RDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATL---EEEA-------GEELVPYLE 516 (885)
T ss_pred cceeeeeeeeHhhhhhhHhcCC-hHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHH---HHhc-------cchhHHHHH
Confidence 55665 443 223222 22333 55566677788888876665555422 2333 567889999
Q ss_pred HHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhhhhhh-----c-hHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHH
Q psy9800 143 DLYKNLLVIFTRPGSEENEYAMKCIMRSMSTLQDKVV-----P-YLSDLLFQLTQRLAAAAKNPSKPNYNHFLFEAITLA 216 (486)
Q Consensus 143 ~lL~~Lf~li~~~~~~eNeylmk~imRii~~~~e~i~-----p-~~~~l~~~L~~il~~v~kNpsnp~f~hylFEsi~~l 216 (486)
.||++|-.++.+....----+-.|| .++.|.+. | |...+++-|++.-..++++..| .|- ++||++.+
T Consensus 517 ~IL~~l~~af~kYQ~KNLlILYDAI----gtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKd-LfP--LLEClSsi 589 (885)
T KOG2023|consen 517 YILDQLVFAFGKYQKKNLLILYDAI----GTLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKD-LFP--LLECLSSI 589 (885)
T ss_pred HHHHHHHHHHHHHhhcceehHHHHH----HHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccch-HHH--HHHHHHHH
Confidence 9999999999663322212334444 44555542 2 3566777788887777765554 222 67777665
Q ss_pred HHH
Q psy9800 217 IRI 219 (486)
Q Consensus 217 ir~ 219 (486)
...
T Consensus 590 a~A 592 (885)
T KOG2023|consen 590 ASA 592 (885)
T ss_pred HHH
Confidence 543
No 16
>KOG1240|consensus
Probab=94.15 E-value=0.23 Score=58.36 Aligned_cols=237 Identities=18% Similarity=0.255 Sum_probs=136.9
Q ss_pred hHHHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCC--CCcccccchhhhhHHHHHHH----------------------
Q psy9800 92 TAKYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNG--QGTLVTADVLAPLAADLYKN---------------------- 147 (486)
Q Consensus 92 ~llp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~--~~~~~~~~~l~p~~~~lL~~---------------------- 147 (486)
.++|.+++++.|+..-|+.-|-.|+-++|.+-.+-+ +..+| .+.|=|.+..++..
T Consensus 462 RVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF-~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~ 540 (1431)
T KOG1240|consen 462 RVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIF-PEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAY 540 (1431)
T ss_pred hhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhh-HhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHH
Confidence 339999999999999999999999999998875410 11222 34455655555533
Q ss_pred -----HHH-----hhCCCCC---------CccHHHHHHHHHHHHHhhhhhhchH-HHHHHHHHHH---HHHH--------
Q psy9800 148 -----LLV-----IFTRPGS---------EENEYAMKCIMRSMSTLQDKVVPYL-SDLLFQLTQR---LAAA-------- 196 (486)
Q Consensus 148 -----Lf~-----li~~~~~---------~eNeylmk~imRii~~~~e~i~p~~-~~l~~~L~~i---l~~v-------- 196 (486)
-+. +.+.+++ +|-.-|.+.+.+.+..+--+=-|+. ..+++.|+.. +++.
T Consensus 541 rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLs 620 (1431)
T KOG1240|consen 541 RFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILS 620 (1431)
T ss_pred HHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHH
Confidence 000 0111111 1112455555555554443333443 2233333221 1111
Q ss_pred --h--cCCCCCcchhHHHHHHHHHHHHHHhcCchHHHHHHHHhhHHHHHHhccccchh-hhhHHHHHHHHHhhCC--CCC
Q psy9800 197 --A--KNPSKPNYNHFLFEAITLAIRIVCKQNPEAVATFEQALFPIFQVIIQQDTLEF-LPYTFQILSLLLEFRP--RGS 269 (486)
Q Consensus 197 --~--kNpsnp~f~hylFEsi~~lir~~~~~~p~~~~~~E~~L~P~~~~IL~~dv~EF-~pYvfQIls~lle~~~--~~~ 269 (486)
+ -|..|++----.||+|.-+--++ . -...|+.+.|.++.-| .|-.|+ +--+++-++.|.++.- +-.
T Consensus 621 hLiTfLNDkDw~LR~aFfdsI~gvsi~V--G----~rs~seyllPLl~Q~l-tD~EE~Viv~aL~~ls~Lik~~ll~K~~ 693 (1431)
T KOG1240|consen 621 HLITFLNDKDWRLRGAFFDSIVGVSIFV--G----WRSVSEYLLPLLQQGL-TDGEEAVIVSALGSLSILIKLGLLRKPA 693 (1431)
T ss_pred HHHHHhcCccHHHHHHHHhhccceEEEE--e----eeeHHHHHHHHHHHhc-cCcchhhHHHHHHHHHHHHHhcccchHH
Confidence 1 13334443344455543221111 0 1246889999999999 566776 7889999999998853 112
Q ss_pred CChhHHHhhhhhcCccccCCCC---Cccc-------------hhHHHHHhhcccCccccccccchhHHHHHHHHHHHHHH
Q psy9800 270 ISAPYLELYPFLLSPVLWSRPG---NIHP-------------LVRLLRAFITKSEPSQFSATLKLNNVLGVFQKLIASKI 333 (486)
Q Consensus 270 is~~y~~L~~~Ll~p~lWe~~g---nip~-------------lvrlL~ayi~k~~~~~~~~~~~l~~ilgifqkli~skI 333 (486)
+-+.-...+|.|..|..|-|++ .|-+ ++++++.|+++ +.-.+- ..+.++..++--++..+
T Consensus 694 v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~advyc~l~P~irpfl~~-~v~~i~---s~~~LlsclkpPVsRsv 769 (1431)
T KOG1240|consen 694 VKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAADVYCKLMPLIRPFLER-PVIQIE---SKEVLLSCLKPPVSRSV 769 (1431)
T ss_pred HHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhhhheEEeehhhHHhhhc-cHhhhc---chHHHHHHhcCCCcHHH
Confidence 4555567789999999999884 1111 48888999998 765553 34555554444444446
Q ss_pred HHHHHHH
Q psy9800 334 FVLLFQR 340 (486)
Q Consensus 334 ~~lll~R 340 (486)
|..+++.
T Consensus 770 ~~~l~r~ 776 (1431)
T KOG1240|consen 770 FNQLLRW 776 (1431)
T ss_pred HHHHHHH
Confidence 6655543
No 17
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=93.88 E-value=3.3 Score=44.73 Aligned_cols=215 Identities=17% Similarity=0.274 Sum_probs=120.9
Q ss_pred HHHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCC----CCC-CccHHHHHHH
Q psy9800 93 AKYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTR----PGS-EENEYAMKCI 167 (486)
Q Consensus 93 llp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~----~~~-~eNeylmk~i 167 (486)
++..+.+.+..+..----|--.||-|++.+- ++++.|+...++++|-.++.. |.. .=|-|+-.++
T Consensus 27 ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~----------~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi 96 (435)
T PF03378_consen 27 LLQNLFALIEKPGSAENEYLMKCIMRVLSVL----------QEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESI 96 (435)
T ss_dssp HHHHHHHHHHTT-STC-HHHHHHHHHHHHHS----------TTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCccchHHHHHHHHHHHHh----------HHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHH
Confidence 3555555554433344557777999998875 455678888888888887733 221 2344777777
Q ss_pred HHHHHHhhhhhhchHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHhcCchHHHHHHHHhhHHHHHHhcccc
Q psy9800 168 MRSMSTLQDKVVPYLSDLLFQLTQRLAAAAKNPSKPNYNHFLFEAITLAIRIVCKQNPEAVATFEQALFPIFQVIIQQDT 247 (486)
Q Consensus 168 mRii~~~~e~i~p~~~~l~~~L~~il~~v~kNpsnp~f~hylFEsi~~lir~~~~~~p~~~~~~E~~L~P~~~~IL~~dv 247 (486)
--++....+.-......+-+.|-..+..|..|.- -.|.=|+|+-++.++... . . +.++..=..|+|+ +|....
T Consensus 97 ~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV-~EF~PYvfQIla~Lle~~-~-~-~~~p~~y~~L~~~---Ll~p~l 169 (435)
T PF03378_consen 97 GALIRFVCEADPEAVSQFEEALFPPFQEILQQDV-QEFIPYVFQILAQLLELR-P-S-SPLPDAYKQLFPP---LLSPAL 169 (435)
T ss_dssp HHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT--TTTHHHHHHHHHHHHHHS-S----S--TTTGGGHHH---HTSGGG
T ss_pred HHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcC-C-C-CCCcHHHHHHHHH---HcCcch
Confidence 6555544433222223344444445555555543 359999999999999982 2 1 1122222234443 455555
Q ss_pred ch---hhhhHHHHHHHHHhhCCCCCC-----ChhHHHhhhhhcCccccCCCCCccchhHHHHHhhcccCccccccccchh
Q psy9800 248 LE---FLPYTFQILSLLLEFRPRGSI-----SAPYLELYPFLLSPVLWSRPGNIHPLVRLLRAFITKSEPSQFSATLKLN 319 (486)
Q Consensus 248 ~E---F~pYvfQIls~lle~~~~~~i-----s~~y~~L~~~Ll~p~lWe~~gnip~lvrlL~ayi~k~~~~~~~~~~~l~ 319 (486)
-| -+|=.--.|...++..+. .+ =+....+|..|++-.. |=..=-.+|.+.+.. -|....+ .++.
T Consensus 170 We~~gniPalvrLL~a~i~k~~~-~i~~~~~l~~iLgvFQkLi~sk~-----~D~~gF~LL~~iv~~-~p~~~l~-~yl~ 241 (435)
T PF03378_consen 170 WERRGNIPALVRLLQAYIKKDPS-FIVANNQLEPILGVFQKLIASKA-----NDHYGFDLLESIVEN-LPPEALE-PYLK 241 (435)
T ss_dssp GGSTTTHHHHHHHHHHHHHHHGG-G----S-CHHHHHHHHHHHT-TT-----CHHHHHHHHHHHHHH-S-HHHHG-GGHH
T ss_pred hccCCCcCcHHHHHHHHHHhCch-hhcchhhHHHHHHHHHHHHCCCC-----cchHHHHHHHHHHHH-CCHHHHH-HHHH
Confidence 54 356444445444444443 22 2456778888888333 312223688888888 7765554 4788
Q ss_pred HHHHH-HHHHHHHH
Q psy9800 320 NVLGV-FQKLIASK 332 (486)
Q Consensus 320 ~ilgi-fqkli~sk 332 (486)
.|+.+ |+||-+||
T Consensus 242 ~I~~lll~RLq~sk 255 (435)
T PF03378_consen 242 QIFTLLLTRLQSSK 255 (435)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhhCC
Confidence 88875 48988888
No 18
>KOG0213|consensus
Probab=93.78 E-value=8.3 Score=44.03 Aligned_cols=211 Identities=16% Similarity=0.229 Sum_probs=127.9
Q ss_pred HHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchh-hhhHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHH
Q psy9800 94 KYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVL-APLAADLYKNLLVIFTRPGSEENEYAMKCIMRSMS 172 (486)
Q Consensus 94 lp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l-~p~~~~lL~~Lf~li~~~~~~eNeylmk~imRii~ 172 (486)
+.-++.-|.|+..+-+..+|.+++|++..-. ..++ .-.-.+++..++.++.++...+. -+..+.=-|..
T Consensus 718 v~R~v~~lkde~e~yrkm~~etv~ri~~~lg---------~~diderleE~lidgil~Afqeqtt~d~-vml~gfg~V~~ 787 (1172)
T KOG0213|consen 718 VSRVVLDLKDEPEQYRKMVAETVSRIVGRLG---------AADIDERLEERLIDGILYAFQEQTTEDS-VMLLGFGTVVN 787 (1172)
T ss_pred HHHHhhhhccccHHHHHHHHHHHHHHHhccc---------cccccHHHHHHHHHHHHHHHHhcccchh-hhhhhHHHHHH
Confidence 6667778899999999999999999998653 4444 23456778888888887543332 45566666777
Q ss_pred HhhhhhhchHHHHHHHHHHHHHHHhcCCCCCcchhH---HHHHHHHHHHHHHhcCchHHHHHHHHhhHHHHHHhccccch
Q psy9800 173 TLQDKVVPYLSDLLFQLTQRLAAAAKNPSKPNYNHF---LFEAITLAIRIVCKQNPEAVATFEQALFPIFQVIIQQDTLE 249 (486)
Q Consensus 173 ~~~e~i~p~~~~l~~~L~~il~~v~kNpsnp~f~hy---lFEsi~~lir~~~~~~p~~~~~~E~~L~P~~~~IL~~dv~E 249 (486)
-+...+.||..++|..+- --.+||+ |.--.. +.-+++.+++. |. |+.++.-+..||-+.+.|
T Consensus 788 ~lg~r~kpylpqi~stiL----~rLnnks-a~vRqqaadlis~la~Vlkt-c~---------ee~~m~~lGvvLyEylge 852 (1172)
T KOG0213|consen 788 ALGGRVKPYLPQICSTIL----WRLNNKS-AKVRQQAADLISSLAKVLKT-CG---------EEKLMGHLGVVLYEYLGE 852 (1172)
T ss_pred HHhhccccchHHHHHHHH----HHhcCCC-hhHHHHHHHHHHHHHHHHHh-cc---------HHHHHHHhhHHHHHhcCc
Confidence 788888899887776433 2334555 222233 44444444444 42 445666677777777777
Q ss_pred hhhhHH----HHHHHHHhhCCCCCCChhHHHhhhhhcCccccCCCC-C-ccchhHHHHHhhcccCccccccccchhHHHH
Q psy9800 250 FLPYTF----QILSLLLEFRPRGSISAPYLELYPFLLSPVLWSRPG-N-IHPLVRLLRAFITKSEPSQFSATLKLNNVLG 323 (486)
Q Consensus 250 F~pYvf----QIls~lle~~~~~~is~~y~~L~~~Ll~p~lWe~~g-n-ip~lvrlL~ayi~k~~~~~~~~~~~l~~ilg 323 (486)
=+|.|+ -.+-.++....-+...|....|+|.|.- .-+++. - ...-+-|+..+-.+ +|+.+..-+-+-.-++
T Consensus 853 eypEvLgsILgAikaI~nvigm~km~pPi~dllPrltP--ILknrheKVqen~IdLvg~Iadr-gpE~v~aREWMRIcfe 929 (1172)
T KOG0213|consen 853 EYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTP--ILKNRHEKVQENCIDLVGTIADR-GPEYVSAREWMRICFE 929 (1172)
T ss_pred ccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchH--hhhhhHHHHHHHHHHHHHHHHhc-CcccCCHHHHHHHHHH
Confidence 666332 2222222222111233334455555443 222221 1 22346677777788 8887766566777777
Q ss_pred HHHHHHHHH
Q psy9800 324 VFQKLIASK 332 (486)
Q Consensus 324 ifqkli~sk 332 (486)
...-|.+.|
T Consensus 930 LlelLkahk 938 (1172)
T KOG0213|consen 930 LLELLKAHK 938 (1172)
T ss_pred HHHHHHHHH
Confidence 777777776
No 19
>KOG1992|consensus
Probab=93.34 E-value=16 Score=42.17 Aligned_cols=74 Identities=19% Similarity=0.248 Sum_probs=50.3
Q ss_pred HHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCC----CC-CCccHHHHHHHH
Q psy9800 94 KYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTR----PG-SEENEYAMKCIM 168 (486)
Q Consensus 94 lp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~----~~-~~eNeylmk~im 168 (486)
+..+..++..++---.=|---||-|++.+-+ +.+.|+++.++..|-+++.+ |. ..-|-|+-.+|-
T Consensus 550 l~nLf~a~s~p~~~EneylmKaImRii~i~~----------~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~ 619 (960)
T KOG1992|consen 550 LTNLFKALSLPGKAENEYLMKAIMRIISILQ----------SAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIG 619 (960)
T ss_pred HHHHHHhccCCcccccHHHHHHHHHHHHhCH----------HhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Confidence 4445556666555667788889999999764 45668888888888777733 33 357779888776
Q ss_pred HHHHHhhhh
Q psy9800 169 RSMSTLQDK 177 (486)
Q Consensus 169 Rii~~~~e~ 177 (486)
-++...++.
T Consensus 620 ~li~~t~~~ 628 (960)
T KOG1992|consen 620 LLIRKTCKA 628 (960)
T ss_pred HHHHHHhcc
Confidence 665544443
No 20
>PTZ00429 beta-adaptin; Provisional
Probab=92.81 E-value=16 Score=42.25 Aligned_cols=61 Identities=8% Similarity=0.112 Sum_probs=49.6
Q ss_pred HHhhccccCCCCCCCCCccccchhhh---hhHhhccCCcchhhHHHHHHhhccCCCCcHHHHHHHHHHHHHcc
Q psy9800 53 QQHIFPELNKPDELCPNELLSPHLKQ---IFVLLFQRLSSSKTAKYSKVSHLESAHPVVHSYASHAIDRVLVM 122 (486)
Q Consensus 53 ~~~V~PeL~~~~~~~~~~~~~piLka---Ky~~~FRn~l~~~~llp~l~~~L~~~~~vV~tyAA~aIerlL~~ 122 (486)
.+.+.-|+++++ |++|+ |.+-..|..--.+.+++.+.++|.|++.-|+-=||+|+-|+...
T Consensus 107 INtl~KDl~d~N---------p~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~ 170 (746)
T PTZ00429 107 VNTFLQDTTNSS---------PVVRALAVRTMMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHD 170 (746)
T ss_pred HHHHHHHcCCCC---------HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Confidence 344444666554 89999 88888888777777799999999999999999999999999764
No 21
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=92.58 E-value=4.3 Score=43.89 Aligned_cols=180 Identities=16% Similarity=0.183 Sum_probs=108.0
Q ss_pred cHHHHHHHhhccccCCCCCCCCCccccchhhh-------hhHhhccCCcchhhHHHHHHhhccCCCCcHHHHHHHHHHHH
Q psy9800 47 NLEDFAQQHIFPELNKPDELCPNELLSPHLKQ-------IFVLLFQRLSSSKTAKYSKVSHLESAHPVVHSYASHAIDRV 119 (486)
Q Consensus 47 ~v~~ff~~~V~PeL~~~~~~~~~~~~~piLka-------Ky~~~FRn~l~~~~llp~l~~~L~~~~~vV~tyAA~aIerl 119 (486)
++.+-+...|..-+.+++ |++|- |.+-...+..... +++.+.++|.|++.-|..-|..++.-+
T Consensus 110 ~~~~~l~~~v~~ll~~~~---------~~VRk~A~~~l~~i~~~~p~~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 110 EMAEPLIPDVIKLLSDPS---------PYVRKKAALALLKIYRKDPDLVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp HHHHHHHHHHHHHHHSSS---------HHHHHHHHHHHHHHHHHCHCCHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhcCCc---------hHHHHHHHHHHHHHhccCHHHHHHH-HHHHHhhhccCCcchhHHHHHHHHHHH
Confidence 455556666777776554 77776 3322333433334 799999999999988998888888877
Q ss_pred HcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhhhhhhchH--HHHHHHHHHHHHHHh
Q psy9800 120 LVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEENEYAMKCIMRSMSTLQDKVVPYL--SDLLFQLTQRLAAAA 197 (486)
Q Consensus 120 L~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~eNeylmk~imRii~~~~e~i~p~~--~~l~~~L~~il~~v~ 197 (486)
+.+ .....+.+..+...|-+++. .-++++.-.++|++..+...-.... ..+++.+...+.
T Consensus 180 ---~~~--------~~~~~~~~~~~~~~L~~~l~----~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~--- 241 (526)
T PF01602_consen 180 ---KCN--------DDSYKSLIPKLIRILCQLLS----DPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQ--- 241 (526)
T ss_dssp ---HCT--------HHHHTTHHHHHHHHHHHHHT----CCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHH---
T ss_pred ---ccC--------cchhhhhHHHHHHHhhhccc----ccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhh---
Confidence 332 11111455566666665553 5778888888888886654433333 346666655555
Q ss_pred cCCCCCcchhHHHHHHHHHHHHHHhcCchHHHHHHHHhhHHHHHHhccccchhhhhHHHHHHHHHhhC
Q psy9800 198 KNPSKPNYNHFLFEAITLAIRIVCKQNPEAVATFEQALFPIFQVIIQQDTLEFLPYTFQILSLLLEFR 265 (486)
Q Consensus 198 kNpsnp~f~hylFEsi~~lir~~~~~~p~~~~~~E~~L~P~~~~IL~~dv~EF~pYvfQIls~lle~~ 265 (486)
....--.||++.+++.. ...++ +-..+.+++...|...-.+.-=.+++.+..+...+
T Consensus 242 -----s~~~~V~~e~~~~i~~l--~~~~~----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~ 298 (526)
T PF01602_consen 242 -----SSSPSVVYEAIRLIIKL--SPSPE----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN 298 (526)
T ss_dssp -----HHHHHHHHHHHHHHHHH--SSSHH----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC
T ss_pred -----ccccHHHHHHHHHHHHh--hcchH----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc
Confidence 11234478888888765 22222 44556677777776443333333566666655444
No 22
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=90.67 E-value=7.9 Score=37.00 Aligned_cols=90 Identities=16% Similarity=0.186 Sum_probs=70.4
Q ss_pred cchhhHHHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCccHHHHHHH
Q psy9800 88 SSSKTAKYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEENEYAMKCI 167 (486)
Q Consensus 88 l~~~~llp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~eNeylmk~i 167 (486)
++...++|....=|...+.|-+..|..++.-+|.. . + .+-+-|.+++|+..|=++++. .|..++...
T Consensus 34 Ldy~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~-~-~-------~~kilPvlPqLI~plk~AL~t----r~~~V~~~~ 100 (183)
T PF10274_consen 34 LDYHHYLPIFFDGLRETEHPYRFLARQGIKDLLER-G-G-------GEKILPVLPQLIIPLKRALNT----RDPEVFCAT 100 (183)
T ss_pred cchhhHHHHHHhhhhccCccHHHHHHHHHHHHHHh-c-c-------hhHHHHHHHHHHHHHHHHHhC----CCHHHHHHH
Confidence 33444599999999999999999999999999987 2 2 677899999999999999975 556566666
Q ss_pred HHHHHHh-------hhhhhchHHHHHHHHH
Q psy9800 168 MRSMSTL-------QDKVVPYLSDLLFQLT 190 (486)
Q Consensus 168 mRii~~~-------~e~i~p~~~~l~~~L~ 190 (486)
++++..+ ++++.||..++++.+.
T Consensus 101 L~~Lq~Lv~~~~~vG~aLvPyyrqLLp~ln 130 (183)
T PF10274_consen 101 LKALQQLVTSSDMVGEALVPYYRQLLPVLN 130 (183)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 6666554 6777788777777654
No 23
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=89.66 E-value=24 Score=35.46 Aligned_cols=233 Identities=17% Similarity=0.217 Sum_probs=126.4
Q ss_pred hccccCCCCCCCCCccccchhhh---hhHh----hc-cCCcchhhH---HHHHHhhccCCCCcHHHHHHHHHHHHHcccC
Q psy9800 56 IFPELNKPDELCPNELLSPHLKQ---IFVL----LF-QRLSSSKTA---KYSKVSHLESAHPVVHSYASHAIDRVLVMRS 124 (486)
Q Consensus 56 V~PeL~~~~~~~~~~~~~piLka---Ky~~----~F-Rn~l~~~~l---lp~l~~~L~~~~~vV~tyAA~aIerlL~~k~ 124 (486)
.-|.|++.+ +..|+ .++. .. ++.++.+++ +.-...-|.|. ..-..|..++..++.++.
T Consensus 4 Lg~~Ltsed---------~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~--~~~~~~l~gl~~L~~~~~ 72 (262)
T PF14500_consen 4 LGEYLTSED---------PIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDH--ACVQPALKGLLALVKMKN 72 (262)
T ss_pred hhhhhCCCC---------HHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccH--hhHHHHHHHHHHHHhCcC
Confidence 345666654 67887 4442 22 233555444 34444455433 333445788888887764
Q ss_pred CCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCccH--HHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHHhcCCCC
Q psy9800 125 PNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEENE--YAMKCIMRSMSTLQDKVVPYLSDLLFQLTQRLAAAAKNPSK 202 (486)
Q Consensus 125 ~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~eNe--ylmk~imRii~~~~e~i~p~~~~l~~~L~~il~~v~kNpsn 202 (486)
- +++. +..+++.+|+-..-+.-..++ .+.+.+--++....+.+.. +-+.+...+.+++++..|
T Consensus 73 ~-------~~~~----~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~----~~~~fv~~~i~~~~gEkD 137 (262)
T PF14500_consen 73 F-------SPES----AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQS----MGDDFVYGFIQLIDGEKD 137 (262)
T ss_pred C-------Chhh----HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHh----chhHHHHHHHHHhccCCC
Confidence 2 2333 666777777766543333333 2222222222444444433 334445556678899999
Q ss_pred CcchhHHHHHHHHHHHHHHhcCchHHHHHHHHhhHHHHHHhccccchhhhhHHHHHHHHHhhCCCCCCChhHHHhhhhhc
Q psy9800 203 PNYNHFLFEAITLAIRIVCKQNPEAVATFEQALFPIFQVIIQQDTLEFLPYTFQILSLLLEFRPRGSISAPYLELYPFLL 282 (486)
Q Consensus 203 p~f~hylFEsi~~lir~~~~~~p~~~~~~E~~L~P~~~~IL~~dv~EF~pYvfQIls~lle~~~~~~is~~y~~L~~~Ll 282 (486)
|+-=..+|+-+-.+++.. |+.++.+..|++++--. |-=.
T Consensus 138 PRnLl~~F~l~~~i~~~~-------------------------~~~~~~e~lFd~~~cYF----------------PI~F 176 (262)
T PF14500_consen 138 PRNLLLSFKLLKVILQEF-------------------------DISEFAEDLFDVFSCYF----------------PITF 176 (262)
T ss_pred HHHHHHHHHHHHHHHHhc-------------------------ccchhHHHHHHHhhhee----------------eeee
Confidence 996677777777665541 13466666666665322 1111
Q ss_pred CccccCCCCCcc--chhHHHHHhhcccCccccccccchhHHHHHHHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHH
Q psy9800 283 SPVLWSRPGNIH--PLVRLLRAFITKSEPSQFSATLKLNNVLGVFQKLIASKIFVLLFQRLSSSKTAKYSKGLVTFLMFY 360 (486)
Q Consensus 283 ~p~lWe~~gnip--~lvrlL~ayi~k~~~~~~~~~~~l~~ilgifqkli~skI~~lll~RLq~~kt~k~~k~~v~f~~~~ 360 (486)
.|.- ..+..|+ ++.+-|++.+.- .+ ..+...+-.++++|.+.-. .-..+.+.++..+
T Consensus 177 ~pp~-~dp~~IT~edLk~~L~~cl~s-~~------------------~fa~~~~p~LleKL~s~~~-~~K~D~L~tL~~c 235 (262)
T PF14500_consen 177 RPPP-NDPYGITREDLKRALRNCLSS-TP------------------LFAPFAFPLLLEKLDSTSP-SVKLDSLQTLKAC 235 (262)
T ss_pred eCCC-CCCCCCCHHHHHHHHHHHhcC-cH------------------hhHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHH
Confidence 1100 0001122 244444444443 21 1122277889999986432 3457888899998
Q ss_pred HHhhChHHHHHHHHhh
Q psy9800 361 VINMGATSLIQLIDSI 376 (486)
Q Consensus 361 ~~~yg~~~li~~ld~i 376 (486)
+-.||++.+.....+|
T Consensus 236 ~~~y~~~~~~~~~~~i 251 (262)
T PF14500_consen 236 IENYGADSLSPHWSTI 251 (262)
T ss_pred HHHCCHHHHHHHHHHH
Confidence 8999998887777764
No 24
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=89.14 E-value=2.7 Score=39.16 Aligned_cols=136 Identities=15% Similarity=0.108 Sum_probs=91.9
Q ss_pred cHHHHHHHhhccccCCCCCCCCCccccc--hhhh--hhH--hhccCCcchhhHHHHHHhhccC-CCCcHHHHHHHHHHHH
Q psy9800 47 NLEDFAQQHIFPELNKPDELCPNELLSP--HLKQ--IFV--LLFQRLSSSKTAKYSKVSHLES-AHPVVHSYASHAIDRV 119 (486)
Q Consensus 47 ~v~~ff~~~V~PeL~~~~~~~~~~~~~p--iLka--Ky~--~~FRn~l~~~~llp~l~~~L~~-~~~vV~tyAA~aIerl 119 (486)
...+=+.+.|..-|++.+. ....-+ .+++ .+. -.|.+ .-.+|+..+.+.|+. +...+...|-.++.+|
T Consensus 21 ~~l~~l~~ri~~LL~s~~~---~~rw~G~~Ll~~~~~~~~~e~l~~--~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l 95 (165)
T PF08167_consen 21 SALHKLVTRINSLLQSKSA---YSRWAGLCLLKVTVEQCSWEILLS--HGSQWLRALLSILEKPDPPSVLEAAIITLTRL 95 (165)
T ss_pred HHHHHHHHHHHHHhCCCCh---hhHHHHHHHHHHHHHHhhHHHHHH--HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4555666778888887652 111001 1222 221 22322 123569999999998 4466778888889999
Q ss_pred HcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhhhhhhchHHHHHHHHHHH
Q psy9800 120 LVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEENEYAMKCIMRSMSTLQDKVVPYLSDLLFQLTQR 192 (486)
Q Consensus 120 L~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~eNeylmk~imRii~~~~e~i~p~~~~l~~~L~~i 192 (486)
+..-. +.|=++++...|.++.+++.++++++. ...=+-.+.++-+++..+--...|++..+=..+...
T Consensus 96 ~~~~~---~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~l 163 (165)
T PF08167_consen 96 FDLIR---GKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANKIESALLSL 163 (165)
T ss_pred HHHhc---CCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHH
Confidence 87654 677789999999999999999999984 234456777777777777777888876665555443
No 25
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=88.71 E-value=24 Score=38.79 Aligned_cols=189 Identities=19% Similarity=0.220 Sum_probs=103.1
Q ss_pred HHHHHHHhhccccCCCCCCCCCccccchhhh-hhH-hhccCCcc---hhhHHHHHHhhccCCCCcHHHHHHHHHHHHHcc
Q psy9800 48 LEDFAQQHIFPELNKPDELCPNELLSPHLKQ-IFV-LLFQRLSS---SKTAKYSKVSHLESAHPVVHSYASHAIDRVLVM 122 (486)
Q Consensus 48 v~~ff~~~V~PeL~~~~~~~~~~~~~piLka-Ky~-~~FRn~l~---~~~llp~l~~~L~~~~~vV~tyAA~aIerlL~~ 122 (486)
+..|...-++..|+..+ .+. +-.+ ..+ .-|...-+ ..+..+.+...|.+++..|+..|+.+|.|+...
T Consensus 35 l~~~~~~~lf~~L~~~~----~e~---v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~ 107 (503)
T PF10508_consen 35 LERLPEPVLFDCLNTSN----REQ---VELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARH 107 (503)
T ss_pred HHhchHHHHHHHHhhcC----hHH---HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC
Confidence 55555555777777553 122 2222 111 11222222 334489999999999999999999999999976
Q ss_pred cCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhhhhhhchHHHH-HHHHHHHHHHHhcCCC
Q psy9800 123 RSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEENEYAMKCIMRSMSTLQDKVVPYLSDL-LFQLTQRLAAAAKNPS 201 (486)
Q Consensus 123 k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~eNeylmk~imRii~~~~e~i~p~~~~l-~~~L~~il~~v~kNps 201 (486)
.+.. ..++.. ..++..+..++.. ++..+-++.++++..+...- +....+ -..+...+..+.++++
T Consensus 108 ~~~~--~~~~~~-------~~l~~~i~~~L~~----~d~~Va~~A~~~L~~l~~~~-~~~~~l~~~~~~~~L~~l~~~~~ 173 (503)
T PF10508_consen 108 SEGA--AQLLVD-------NELLPLIIQCLRD----PDLSVAKAAIKALKKLASHP-EGLEQLFDSNLLSKLKSLMSQSS 173 (503)
T ss_pred CHHH--HHHhcC-------ccHHHHHHHHHcC----CcHHHHHHHHHHHHHHhCCc-hhHHHHhCcchHHHHHHHHhccC
Confidence 5421 111111 2345566666764 66777888888887665432 222223 1222555666666644
Q ss_pred C-CcchhHHHHHHHHHHHHHHhcCchHHHHHHH-HhhHHHHHHhccccchhhhhHHHHHHHHHh
Q psy9800 202 K-PNYNHFLFEAITLAIRIVCKQNPEAVATFEQ-ALFPIFQVIIQQDTLEFLPYTFQILSLLLE 263 (486)
Q Consensus 202 n-p~f~hylFEsi~~lir~~~~~~p~~~~~~E~-~L~P~~~~IL~~dv~EF~pYvfQIls~lle 263 (486)
+ .+ ...+| +++.+ ++..++......+ -+++.+..-|..|=.=.---++++++.|-+
T Consensus 174 ~~vR--~Rv~e---l~v~i-~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~ 231 (503)
T PF10508_consen 174 DIVR--CRVYE---LLVEI-ASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE 231 (503)
T ss_pred HHHH--HHHHH---HHHHH-HhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc
Confidence 3 23 23444 44444 4556666665543 355554444444311123345566666654
No 26
>KOG2022|consensus
Probab=88.70 E-value=55 Score=38.27 Aligned_cols=140 Identities=15% Similarity=0.229 Sum_probs=88.6
Q ss_pred HHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCC--CccHHHHHHHHHHH
Q psy9800 94 KYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGS--EENEYAMKCIMRSM 171 (486)
Q Consensus 94 lp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~--~eNeylmk~imRii 171 (486)
+|++.+-|..++.-+. |-.++..+..-. +.++.|++..++.-+-..+.+..- ....-+|+||=.++
T Consensus 551 l~~L~~~Lh~sk~s~q--~i~tl~tlC~~C----------~~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvl 618 (982)
T KOG2022|consen 551 LPLLFQGLHNSKESEQ--AISTLKTLCETC----------PESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVL 618 (982)
T ss_pred HHHHHHHhcCchHHHH--HHHHHHHHHHhh----------hhhCchHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHH
Confidence 8888887765443332 222344444422 778999999999999888866332 35568999999999
Q ss_pred HHhh-hhhhchHHHHHHHHHHHHHHH----hcCCCCCcchhHHHHHHHHHHHHHHh-------cCch---------HHHH
Q psy9800 172 STLQ-DKVVPYLSDLLFQLTQRLAAA----AKNPSKPNYNHFLFEAITLAIRIVCK-------QNPE---------AVAT 230 (486)
Q Consensus 172 ~~~~-e~i~p~~~~l~~~L~~il~~v----~kNpsnp~f~hylFEsi~~lir~~~~-------~~p~---------~~~~ 230 (486)
+..+ |++..|...++..+.+-+... .++|+|-...-+..-++++|-..--. +.|+ ...+
T Consensus 619 s~~~pEe~~kyl~~lin~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~LftSL~~~~~~~d~d~~~~~~~~~qq~~il~ 698 (982)
T KOG2022|consen 619 SRLKPEEIPKYLMKLINPILSQLEINLAPGIDDQENHLRIAFQLNTISALFTSLINKKDIIDTDQPEQREEPFQQFPILQ 698 (982)
T ss_pred HhccHHhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCccccccchhhhccccccCCHHH
Confidence 9888 666667777777766666555 34555544444444555555554100 1111 2345
Q ss_pred HHHHhhHHHHHHhcc
Q psy9800 231 FEQALFPIFQVIIQQ 245 (486)
Q Consensus 231 ~E~~L~P~~~~IL~~ 245 (486)
+-+.++|+|.+++..
T Consensus 699 v~~k~i~~~~kv~s~ 713 (982)
T KOG2022|consen 699 VLQKAIPVFEKVLSM 713 (982)
T ss_pred HHHHHHHHHHHHHHH
Confidence 567788999988864
No 27
>KOG1242|consensus
Probab=88.43 E-value=15 Score=40.90 Aligned_cols=80 Identities=14% Similarity=0.203 Sum_probs=50.8
Q ss_pred HHHHHHhh--hhhhHHHHHHHHHhhcccccccccccccccccHHHHHHHhhccccCCCCCCCCCccccchhhh---hhHh
Q psy9800 8 TFGAYVEI--KYKDTAIYLVTSLASQGSTVKHGTTKSSTLVNLEDFAQQHIFPELNKPDELCPNELLSPHLKQ---IFVL 82 (486)
Q Consensus 8 i~~~yi~~--r~KD~Ai~Lv~sla~~~~t~~~Gvt~~n~lv~v~~ff~~~V~PeL~~~~~~~~~~~~~piLka---Ky~~ 82 (486)
.+..|... |.|-+++.++++++.-.. ...+++...|.|.+..--. +.+ |-+|- +-+.
T Consensus 259 ll~~l~~~kWrtK~aslellg~m~~~ap-------------~qLs~~lp~iiP~lsevl~---DT~--~evr~a~~~~l~ 320 (569)
T KOG1242|consen 259 LLGSLLEAKWRTKMASLELLGAMADCAP-------------KQLSLCLPDLIPVLSEVLW---DTK--PEVRKAGIETLL 320 (569)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHhch-------------HHHHHHHhHhhHHHHHHHc---cCC--HHHHHHHHHHHH
Confidence 34444444 999999999999987664 4677888889998865332 444 54444 3333
Q ss_pred hccCCcchhhH---HHHHHhhccCCC
Q psy9800 83 LFQRLSSSKTA---KYSKVSHLESAH 105 (486)
Q Consensus 83 ~FRn~l~~~~l---lp~l~~~L~~~~ 105 (486)
.|-+-+.-..+ +|.+++++.+++
T Consensus 321 ~~~svidN~dI~~~ip~Lld~l~dp~ 346 (569)
T KOG1242|consen 321 KFGSVIDNPDIQKIIPTLLDALADPS 346 (569)
T ss_pred HHHHhhccHHHHHHHHHHHHHhcCcc
Confidence 33332222222 888888888877
No 28
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=88.36 E-value=24 Score=40.69 Aligned_cols=62 Identities=15% Similarity=0.156 Sum_probs=49.8
Q ss_pred HHhhccccCCCCCCCCCccccchhhh---hhHhhccCCcchhhHHHHHHhhccCCCCcHHHHHHHHHHHHHccc
Q psy9800 53 QQHIFPELNKPDELCPNELLSPHLKQ---IFVLLFQRLSSSKTAKYSKVSHLESAHPVVHSYASHAIDRVLVMR 123 (486)
Q Consensus 53 ~~~V~PeL~~~~~~~~~~~~~piLka---Ky~~~FRn~l~~~~llp~l~~~L~~~~~vV~tyAA~aIerlL~~k 123 (486)
.+.+.-||+.++ |.+|+ +++-.-|-.-=..++++.+.+|+.|++.=|+-+||.||-++....
T Consensus 94 vNti~kDl~d~N---------~~iR~~AlR~ls~l~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld 158 (757)
T COG5096 94 VNTIQKDLQDPN---------EEIRGFALRTLSLLRVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLD 158 (757)
T ss_pred HHHHHhhccCCC---------HHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcC
Confidence 344555776664 78887 777777766556666999999999999999999999999998765
No 29
>KOG1062|consensus
Probab=87.00 E-value=66 Score=37.26 Aligned_cols=195 Identities=13% Similarity=0.141 Sum_probs=124.6
Q ss_pred cccHHHHHHHhhccccCCCCCCCCCccccchhhhhhHhhccCCcchhhH---HHHHHhhccCCCCcHHHHHHHHHHHHHc
Q psy9800 45 LVNLEDFAQQHIFPELNKPDELCPNELLSPHLKQIFVLLFQRLSSSKTA---KYSKVSHLESAHPVVHSYASHAIDRVLV 121 (486)
Q Consensus 45 lv~v~~ff~~~V~PeL~~~~~~~~~~~~~piLkaKy~~~FRn~l~~~~l---lp~l~~~L~~~~~vV~tyAA~aIerlL~ 121 (486)
.-||.-..++.+..||++++. +...--+.++-+..+.|.+ .|.+.++|.+++.-|+--|+.|.-|+..
T Consensus 101 ~qdvllLltNslknDL~s~nq---------~vVglAL~alg~i~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~ir 171 (866)
T KOG1062|consen 101 RQDLLLLLTNSLKNDLNSSNQ---------YVVGLALCALGNICSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIR 171 (866)
T ss_pred chHHHHHHHHHHHhhccCCCe---------eehHHHHHHhhccCCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 348888999999999988752 2222334677888888877 9999999999999999999999999987
Q ss_pred ccCCCCCCcccccchhhhhHHHH-HHHHHHhhCCCCCCccHHHHHHHHHHHHHhh--hhhhchHHHHHHHHHHHHHHHhc
Q psy9800 122 MRSPNGQGTLVTADVLAPLAADL-YKNLLVIFTRPGSEENEYAMKCIMRSMSTLQ--DKVVPYLSDLLFQLTQRLAAAAK 198 (486)
Q Consensus 122 ~k~~~~~~~~~~~~~l~p~~~~l-L~~Lf~li~~~~~~eNeylmk~imRii~~~~--e~i~p~~~~l~~~L~~il~~v~k 198 (486)
-- ++ +-+. +.+.-+++.+ ..---++..+.-+....+ .+...+...++..|+.+++.+..
T Consensus 172 K~-P~--------------l~e~f~~~~~~lL~e---k~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~ 233 (866)
T KOG1062|consen 172 KV-PD--------------LVEHFVIAFRKLLCE---KHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTN 233 (866)
T ss_pred cC-ch--------------HHHHhhHHHHHHHhh---cCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 32 21 1112 2222223322 111122222222222222 12456777799999999999998
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHhcCchHHHHHHHHhhHHHHHHhccccchhhhhHHHHHHHHHhhCCCCCCChhHHHhh
Q psy9800 199 NPSKPNYNHFLFEAITLAIRIVCKQNPEAVATFEQALFPIFQVIIQQDTLEFLPYTFQILSLLLEFRPRGSISAPYLELY 278 (486)
Q Consensus 199 Npsnp~f~hylFEsi~~lir~~~~~~p~~~~~~E~~L~P~~~~IL~~dv~EF~pYvfQIls~lle~~~~~~is~~y~~L~ 278 (486)
..--|.|+ ...-++.+-|+ .++ -+..||.++-.+..+-.-.||++....+.+ .=...+--||
T Consensus 234 ~~yspeyd--------------v~gi~dPFLQi--~iL-rlLriLGq~d~daSd~M~DiLaqvatntds-skN~GnAILY 295 (866)
T KOG1062|consen 234 SGYSPEYD--------------VHGISDPFLQI--RIL-RLLRILGQNDADASDLMNDILAQVATNTDS-SKNAGNAILY 295 (866)
T ss_pred CCCCCccC--------------ccCCCchHHHH--HHH-HHHHHhcCCCccHHHHHHHHHHHHHhcccc-cccchhHHHH
Confidence 88888877 23334433333 222 345677777777776666899998766553 3444566677
Q ss_pred hhhcCc
Q psy9800 279 PFLLSP 284 (486)
Q Consensus 279 ~~Ll~p 284 (486)
+...+.
T Consensus 296 E~V~TI 301 (866)
T KOG1062|consen 296 ECVRTI 301 (866)
T ss_pred HHHHHH
Confidence 777764
No 30
>KOG2023|consensus
Probab=86.22 E-value=3.1 Score=46.74 Aligned_cols=110 Identities=20% Similarity=0.228 Sum_probs=74.3
Q ss_pred hHHHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCccHHHHHHHHHHH
Q psy9800 92 TAKYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEENEYAMKCIMRSM 171 (486)
Q Consensus 92 ~llp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~eNeylmk~imRii 171 (486)
.++|.++++|.|+...|++..++|+-|.=.---.. + +.+ +...+|++|++.+-- .|-.+=.|--..+
T Consensus 434 eLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~---~--~~~----~f~pvL~~ll~~llD----~NK~VQEAAcsAf 500 (885)
T KOG2023|consen 434 ELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQD---S--RDE----YFKPVLEGLLRRLLD----SNKKVQEAACSAF 500 (885)
T ss_pred HHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcC---C--hHh----hhHHHHHHHHHHHhc----ccHHHHHHHHHHH
Confidence 57999999999999999999999999873322100 0 123 445566666555532 2333333333333
Q ss_pred ----HHhhhhhhchHHHHHHHHHHHHHHHhc-CCCCCcchhHHHHHHHHHHHHH
Q psy9800 172 ----STLQDKVVPYLSDLLFQLTQRLAAAAK-NPSKPNYNHFLFEAITLAIRIV 220 (486)
Q Consensus 172 ----~~~~e~i~p~~~~l~~~L~~il~~v~k-Npsnp~f~hylFEsi~~lir~~ 220 (486)
.-+++++.||...++++|.-.++..-+ | ---+..+||++-.++
T Consensus 501 AtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KN------LlILYDAIgtlAdsv 548 (885)
T KOG2023|consen 501 ATLEEEAGEELVPYLEYILDQLVFAFGKYQKKN------LLILYDAIGTLADSV 548 (885)
T ss_pred HHHHHhccchhHHHHHHHHHHHHHHHHHHhhcc------eehHHHHHHHHHHHH
Confidence 445567889999999999988877643 3 256889999998884
No 31
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=84.84 E-value=45 Score=37.66 Aligned_cols=253 Identities=13% Similarity=0.188 Sum_probs=133.5
Q ss_pred cHHHHHHHhhccccCCCCCCC--CCccccchhhh-hhH-hhccCCcchhhHHHHHHhhccCCCCcHHHHHHHHHHHHHcc
Q psy9800 47 NLEDFAQQHIFPELNKPDELC--PNELLSPHLKQ-IFV-LLFQRLSSSKTAKYSKVSHLESAHPVVHSYASHAIDRVLVM 122 (486)
Q Consensus 47 ~v~~ff~~~V~PeL~~~~~~~--~~~~~~piLka-Ky~-~~FRn~l~~~~llp~l~~~L~~~~~vV~tyAA~aIerlL~~ 122 (486)
+=..|+.+.|.|||-++-+-- -... +--|. -+- .+--.+..-.+...-++..+.|+..|-++.+|.+..|++..
T Consensus 474 ~tp~~lr~~v~pefF~~fw~rr~A~dr--~~~k~v~~ttvilAk~~g~~~v~~kil~~~~De~ep~r~m~a~~vsri~~~ 551 (975)
T COG5181 474 DTPWKLRDQVSPEFFSPFWRRRSAGDR--RSYKQVVLTTVILAKMGGDPRVSRKILEYYSDEPEPYRKMNAGLVSRIFSR 551 (975)
T ss_pred CCHHHHHHhhcHHhhchHHHhhhcccc--cccceeehhHHHHHHHcCChHHHHHHHhhccCCcchhhhhhhHHHHHHHHh
Confidence 345789999999997643100 0000 11111 011 22233444445577888899999999999999999999885
Q ss_pred cCCCCCCcccccchh-hhhHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHHhcCCC
Q psy9800 123 RSPNGQGTLVTADVL-APLAADLYKNLLVIFTRPGSEENEYAMKCIMRSMSTLQDKVVPYLSDLLFQLTQRLAAAAKNPS 201 (486)
Q Consensus 123 k~~~~~~~~~~~~~l-~p~~~~lL~~Lf~li~~~~~~eNeylmk~imRii~~~~e~i~p~~~~l~~~L~~il~~v~kNps 201 (486)
-. ..++ .-.-..++..++.++.++..++ --+.+|.--++..+.-...||...++.. +++.. +||+
T Consensus 552 lg---------~~~~dErleerl~d~il~Afqeq~~t~-~~il~~f~tv~vsl~~r~kp~l~~ivSt---iL~~L-~~k~ 617 (975)
T COG5181 552 LG---------RLGFDERLEERLYDSILNAFQEQDTTV-GLILPCFSTVLVSLEFRGKPHLSMIVST---ILKLL-RSKP 617 (975)
T ss_pred cc---------cccccHHHHHHHHHHHHHHHHhccccc-cEEEecccceeeehhhccCcchHHHHHH---HHHHh-cCCC
Confidence 53 2222 2234566777777887744333 3566776666665666667776665543 33333 3333
Q ss_pred CCcch---hHHHHHHHHHHHHHHhcCchHHHHHHHHhhHHHHHHhccccchhhhhHHHHHHHHHhhCCC-------CCCC
Q psy9800 202 KPNYN---HFLFEAITLAIRIVCKQNPEAVATFEQALFPIFQVIIQQDTLEFLPYTFQILSLLLEFRPR-------GSIS 271 (486)
Q Consensus 202 np~f~---hylFEsi~~lir~~~~~~p~~~~~~E~~L~P~~~~IL~~dv~EF~pYvfQIls~lle~~~~-------~~is 271 (486)
|.-- --+.-+++.+++. |. |...+.-+..||-+++.|-+|. +|...+..-++ ...-
T Consensus 618 -p~vR~~aadl~~sl~~vlk~-c~---------e~~~l~klg~iLyE~lge~ypE---vLgsil~Ai~~I~sv~~~~~mq 683 (975)
T COG5181 618 -PDVRIRAADLMGSLAKVLKA-CG---------ETKELAKLGNILYENLGEDYPE---VLGSILKAICSIYSVHRFRSMQ 683 (975)
T ss_pred -ccHHHHHHHHHHHHHHHHHh-cc---------hHHHHHHHhHHHHHhcCcccHH---HHHHHHHHHHHHhhhhcccccC
Confidence 2222 2344444444444 43 2344556667777777777773 33333322110 0122
Q ss_pred hhHHHhhhhhcCccccCCCC-C-ccchhHHHHHhhcccCccccccccchhHHHHHHHHHHHHH
Q psy9800 272 APYLELYPFLLSPVLWSRPG-N-IHPLVRLLRAFITKSEPSQFSATLKLNNVLGVFQKLIASK 332 (486)
Q Consensus 272 ~~y~~L~~~Ll~p~lWe~~g-n-ip~lvrlL~ayi~k~~~~~~~~~~~l~~ilgifqkli~sk 332 (486)
|...+++|.|.- .-.++. - ...-+.++.-+... +|+.+...+-+-.-++....|.+.+
T Consensus 684 pPi~~ilP~ltP--ILrnkh~Kv~~nti~lvg~I~~~-~peyi~~rEWMRIcfeLvd~Lks~n 743 (975)
T COG5181 684 PPISGILPSLTP--ILRNKHQKVVANTIALVGTICMN-SPEYIGVREWMRICFELVDSLKSWN 743 (975)
T ss_pred CchhhccccccH--hhhhhhHHHhhhHHHHHHHHHhc-CcccCCHHHHHHHHHHHHHHHHHhh
Confidence 233344444332 111111 1 22234455555566 6666654444555555555555544
No 32
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=83.49 E-value=1.3 Score=29.34 Aligned_cols=28 Identities=14% Similarity=0.132 Sum_probs=24.9
Q ss_pred HHHHHhhccCCCCcHHHHHHHHHHHHHc
Q psy9800 94 KYSKVSHLESAHPVVHSYASHAIDRVLV 121 (486)
Q Consensus 94 lp~l~~~L~~~~~vV~tyAA~aIerlL~ 121 (486)
+|.+.++|.|++.-|+.-||.|+.++..
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 7999999999999999999999998754
No 33
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=82.15 E-value=52 Score=33.23 Aligned_cols=190 Identities=15% Similarity=0.174 Sum_probs=102.8
Q ss_pred ccHHHHHHHhhccccCCCC-CC--------C-C--------------Cccccchhhh---hhHhhccCCcchhhH-----
Q psy9800 46 VNLEDFAQQHIFPELNKPD-EL--------C-P--------------NELLSPHLKQ---IFVLLFQRLSSSKTA----- 93 (486)
Q Consensus 46 v~v~~ff~~~V~PeL~~~~-~~--------~-~--------------~~~~~piLka---Ky~~~FRn~l~~~~l----- 93 (486)
..++.++.+++.|-|.... .. . + .-...+..++ .+++. .+.....+
T Consensus 41 ~~~~~~L~~~lrPlf~k~~~~~~t~~gr~~l~P~~~~~~~~~~~~~~~WK~~~~~~~~~l~w~v~--~~~~~~~i~~~~~ 118 (282)
T PF10521_consen 41 SIIERILIDTLRPLFSKSKNPRITSSGRKGLRPKLGFSFDDDELQRQPWKSNPGLASHVLSWIVL--SQLDRPWISQHWP 118 (282)
T ss_pred HHHHHHHHHHHhHHhcCCCCcccccccccccCCCCcccccccccccCCcccCCcccHHHHHHHHH--hcCCcchHHHhhh
Confidence 3688899999999987640 00 0 0 0000133342 55544 33333333
Q ss_pred --HHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCC-CCC---CccHHHHHHH
Q psy9800 94 --KYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTR-PGS---EENEYAMKCI 167 (486)
Q Consensus 94 --lp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~-~~~---~eNeylmk~i 167 (486)
+|.+...+.|.+..++.-+..++..++..-... ....+.+.-+.+... +.|+.++-- |.. .|.-.+++..
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~-~~~~L~~tGl~~v~~---~al~~~L~~LP~~tp~~~s~~Ll~~a 194 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAA-EWDILRRTGLFSVFE---DALFPCLYYLPPITPEDESLELLQAA 194 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChh-hhHHHHHcChHHHHH---HHHHHHhhcCCCCCCchhhHHHHHHH
Confidence 999999999999999999999999999854321 000122222333333 344444421 221 2333555444
Q ss_pred HHHHHHh-----hhhhhchHHHHHHHHHH-HHHHHhcCCC--CCcchhHHHHHHHHHHHHHHhcCchHHHHHHHHhhHHH
Q psy9800 168 MRSMSTL-----QDKVVPYLSDLLFQLTQ-RLAAAAKNPS--KPNYNHFLFEAITLAIRIVCKQNPEAVATFEQALFPIF 239 (486)
Q Consensus 168 mRii~~~-----~e~i~p~~~~l~~~L~~-il~~v~kNps--np~f~hylFEsi~~lir~~~~~~p~~~~~~E~~L~P~~ 239 (486)
.-.+..+ .+.-.+....+...|.+ ++..+.--++ +|+-..++++.+..+++. ++- ..+..+ +.++|++
T Consensus 195 y~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~-lGi--~~~~hL-~rii~~l 270 (282)
T PF10521_consen 195 YPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDE-LGI--SSVKHL-QRIIPVL 270 (282)
T ss_pred HHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHH-hcc--HHHHHH-HHHHHHH
Confidence 4444333 33333445555555555 5555544444 566667778888777776 221 223333 4456666
Q ss_pred HHHhcc
Q psy9800 240 QVIIQQ 245 (486)
Q Consensus 240 ~~IL~~ 245 (486)
..++++
T Consensus 271 ~~~l~n 276 (282)
T PF10521_consen 271 SQILEN 276 (282)
T ss_pred HHHhcC
Confidence 666654
No 34
>KOG1058|consensus
Probab=81.29 E-value=12 Score=42.88 Aligned_cols=90 Identities=21% Similarity=0.239 Sum_probs=67.1
Q ss_pred HHhhccccCCCCCCCCCccccchhhh---hhHhhccCCcchhhHHHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCC
Q psy9800 53 QQHIFPELNKPDELCPNELLSPHLKQ---IFVLLFQRLSSSKTAKYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQG 129 (486)
Q Consensus 53 ~~~V~PeL~~~~~~~~~~~~~piLka---Ky~~~FRn~l~~~~llp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~ 129 (486)
.+.+--|||-|++ ++|. +|+.+-|.+-=.+.++|.+.+||.+++.-|+-+|-.||-.|...
T Consensus 101 cna~RkDLQHPNE---------yiRG~TLRFLckLkE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~------- 164 (948)
T KOG1058|consen 101 CNAYRKDLQHPNE---------YIRGSTLRFLCKLKEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKN------- 164 (948)
T ss_pred HHHHhhhccCchH---------hhcchhhhhhhhcCcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhh-------
Confidence 4666778887764 4555 78888888777777899999999999999999999988766542
Q ss_pred cccccchhhhhHHHHHHHHHHhhCCCC--CCccHHHH
Q psy9800 130 TLVTADVLAPLAADLYKNLLVIFTRPG--SEENEYAM 164 (486)
Q Consensus 130 ~~~~~~~l~p~~~~lL~~Lf~li~~~~--~~eNeylm 164 (486)
.+++-|=+++|+... +.++++ -.-|.|+|
T Consensus 165 ----~~~L~pDapeLi~~f--L~~e~DpsCkRNAFi~ 195 (948)
T KOG1058|consen 165 ----FEHLIPDAPELIESF--LLTEQDPSCKRNAFLM 195 (948)
T ss_pred ----hhhhcCChHHHHHHH--HHhccCchhHHHHHHH
Confidence 355667788888887 344432 24666666
No 35
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=80.98 E-value=4 Score=34.81 Aligned_cols=53 Identities=11% Similarity=0.184 Sum_probs=46.1
Q ss_pred hHHHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCC
Q psy9800 92 TAKYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTR 154 (486)
Q Consensus 92 ~llp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~ 154 (486)
.++|.+..++.|++.=||-||+.|+-.+.... +..+-|+..+++..|++++.-
T Consensus 27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~----------~~~~l~~f~~IF~~L~kl~~D 79 (97)
T PF12755_consen 27 EILPPVLKCFDDQDSRVRYYACEALYNISKVA----------RGEILPYFNEIFDALCKLSAD 79 (97)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHcC
Confidence 45999999999999999999999999887543 566778999999999999965
No 36
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=80.97 E-value=32 Score=29.90 Aligned_cols=96 Identities=19% Similarity=0.215 Sum_probs=61.9
Q ss_pred chhhhhHHHHHHHHHHhhCCCC-CC---ccHHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHHhcCCCCCcchhHHH
Q psy9800 135 DVLAPLAADLYKNLLVIFTRPG-SE---ENEYAMKCIMRSMSTLQDKVVPYLSDLLFQLTQRLAAAAKNPSKPNYNHFLF 210 (486)
Q Consensus 135 ~~l~p~~~~lL~~Lf~li~~~~-~~---eNeylmk~imRii~~~~e~i~p~~~~l~~~L~~il~~v~kNpsnp~f~hylF 210 (486)
+.++++.-.+++.+-..+.... .. |=.-.+++|..++...+ ++......|+.++++...++ |.+-..+|
T Consensus 3 ~fL~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g----~~i~~a~pQI~acL~saL~~---~eL~~~al 75 (107)
T smart00802 3 DFLKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMG----KHISSALPQIMACLQSALEI---PELRSLAL 75 (107)
T ss_pred HHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhCc---hhHHHHHH
Confidence 4577888888888888885433 22 22356666666666554 44555566777777766665 45889999
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHhhHHHHHHh
Q psy9800 211 EAITLAIRIVCKQNPEAVATFEQALFPIFQVII 243 (486)
Q Consensus 211 Esi~~lir~~~~~~p~~~~~~E~~L~P~~~~IL 243 (486)
+|...+++. .+ + ++++..+-.+|..|+
T Consensus 76 ~~W~~~i~~-L~--~---~~l~~ll~~~~~~i~ 102 (107)
T smart00802 76 RCWHVLIKT-LK--E---EELGPLLDQIFAAIL 102 (107)
T ss_pred HHHHHHHHh-CC--H---HHHHHHHHHHHHHHH
Confidence 999999998 32 1 345555544444444
No 37
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=80.72 E-value=68 Score=32.50 Aligned_cols=178 Identities=18% Similarity=0.239 Sum_probs=114.1
Q ss_pred cccccHHHHHHHhhccccCCCCCCCCCccccchhhh---hhH----hhccCCcchhhHHHHHHhhccCCCCcHHHHHHHH
Q psy9800 43 STLVNLEDFAQQHIFPELNKPDELCPNELLSPHLKQ---IFV----LLFQRLSSSKTAKYSKVSHLESAHPVVHSYASHA 115 (486)
Q Consensus 43 n~lv~v~~ff~~~V~PeL~~~~~~~~~~~~~piLka---Ky~----~~FRn~l~~~~llp~l~~~L~~~~~vV~tyAA~a 115 (486)
++...+++.+.+.|.|-+++++ +-+|. |.+ .-=+ . ...+.++++.+.+..++..|+.-|..+
T Consensus 19 ~~~~~l~~ll~~lI~P~v~~~~---------~~vR~~al~cLGl~~Lld~-~-~a~~~l~l~~~~~~~~~~~v~~~al~~ 87 (298)
T PF12719_consen 19 SPNISLESLLDSLILPAVQSSD---------PAVRELALKCLGLCCLLDK-E-LAKEHLPLFLQALQKDDEEVKITALKA 87 (298)
T ss_pred CCcchHHHHHHHHHHHHhcCCC---------HHHHHHHHHHHHHHHHhCh-H-HHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4556778999999999999876 33444 333 2222 1 222338889998877899999999999
Q ss_pred HHHHHcccCCCCCCcccccchh---hhhHHHHHHHHHHhhCCCCCCccHHHH----HHHHHHHHHhhhhhhchHHHHHHH
Q psy9800 116 IDRVLVMRSPNGQGTLVTADVL---APLAADLYKNLLVIFTRPGSEENEYAM----KCIMRSMSTLQDKVVPYLSDLLFQ 188 (486)
Q Consensus 116 IerlL~~k~~~~~~~~~~~~~l---~p~~~~lL~~Lf~li~~~~~~eNeylm----k~imRii~~~~e~i~p~~~~l~~~ 188 (486)
|=-++...+. ..+....- ......++.-+.+.+.. +|+.+- .++-|++ +.+.+.+ ...++..
T Consensus 88 l~Dll~~~g~----~~~~~~~~~~~~~~~~~l~~~l~~~l~~----~~~~~~~~a~EGl~KLl--L~~~i~~-~~~vL~~ 156 (298)
T PF12719_consen 88 LFDLLLTHGI----DIFDSESDNDESVDSKSLLKILTKFLDS----ENPELQAIAVEGLCKLL--LSGRISD-PPKVLSR 156 (298)
T ss_pred HHHHHHHcCc----hhccchhccCccchHhHHHHHHHHHHhc----CCHHHHHHHHHHHHHHH--hcCCCCc-HHHHHHH
Confidence 9888887643 12222222 34455666666666665 243322 2222222 2222322 2333333
Q ss_pred HHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHhcCchHHHHHHHHhhHHHHHHhcccc
Q psy9800 189 LTQRLAAAAKNPSKPNYNHFLFEAITLAIRIVCKQNPEAVATFEQALFPIFQVIIQQDT 247 (486)
Q Consensus 189 L~~il~~v~kNpsnp~f~hylFEsi~~lir~~~~~~p~~~~~~E~~L~P~~~~IL~~dv 247 (486)
| ...-=||+... |+++=.+++.....-|..+++.-..++++..|.+..+....-
T Consensus 157 L----ll~yF~p~t~~-~~~LrQ~L~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~~~ 210 (298)
T PF12719_consen 157 L----LLLYFNPSTED-NQRLRQCLSVFFPVYASSSPENQERLAEAFLPTLRTLSNAPD 210 (298)
T ss_pred H----HHHHcCcccCC-cHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhCcc
Confidence 3 33345776643 789999999999987888888888999999999999886643
No 38
>KOG2274|consensus
Probab=80.61 E-value=41 Score=39.33 Aligned_cols=123 Identities=20% Similarity=0.165 Sum_probs=61.5
Q ss_pred hhhHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHH---HHhcCCCCCcchhHHHHHHH
Q psy9800 138 APLAADLYKNLLVIFTRPGSEENEYAMKCIMRSMSTLQDKVVPYLSDLLFQLTQRLA---AAAKNPSKPNYNHFLFEAIT 214 (486)
Q Consensus 138 ~p~~~~lL~~Lf~li~~~~~~eNeylmk~imRii~~~~e~i~p~~~~l~~~L~~il~---~v~kNpsnp~f~hylFEsi~ 214 (486)
...+++++.+|...... .+ .+-|+||=.+++.++-...-....++..-++++. +-.++|=+-.++-|+|++++
T Consensus 590 ~~~~qd~f~el~q~~~~---~g-~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVa 665 (1005)
T KOG2274|consen 590 ASLAQDLFEELLQIAAN---YG-PMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVA 665 (1005)
T ss_pred HHHHHHHHHHHHHHHHh---hc-chHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhH
Confidence 33444455555444333 22 3677888877777765441111233333333333 33344444467788998888
Q ss_pred HHHHHHHhcCchHHHHHHH----HhhHHHHHHhccccchhhh--hHHHHHHHHHhhCC
Q psy9800 215 LAIRIVCKQNPEAVATFEQ----ALFPIFQVIIQQDTLEFLP--YTFQILSLLLEFRP 266 (486)
Q Consensus 215 ~lir~~~~~~p~~~~~~E~----~L~P~~~~IL~~dv~EF~p--YvfQIls~lle~~~ 266 (486)
-+.-. +++.+.+..=-+ -+.-..+.+++--..+=.- |++|++++||+-..
T Consensus 666 k~tlH--sdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~ 721 (1005)
T KOG2274|consen 666 KITLH--SDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPET 721 (1005)
T ss_pred hheee--cCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCcc
Confidence 77632 233332221111 1222233344444443333 88888888875544
No 39
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=79.78 E-value=40 Score=36.06 Aligned_cols=173 Identities=17% Similarity=0.192 Sum_probs=106.3
Q ss_pred HHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHH
Q psy9800 142 ADLYKNLLVIFTRPGSEENEYAMKCIMRSMSTLQDKVVPYLSDLLFQLTQRLAAAAKNPSKPNYNHFLFEAITLAIRIVC 221 (486)
Q Consensus 142 ~~lL~~Lf~li~~~~~~eNeylmk~imRii~~~~e~i~p~~~~l~~~L~~il~~v~kNpsnp~f~hylFEsi~~lir~~~ 221 (486)
...+.+|+.+++.++..|=|++-..+.|+...+ .+.-..+...+.+++.+...+..++.----+.|.+|.+++.-.
T Consensus 132 ~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~----~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~ 207 (409)
T PF01603_consen 132 QKFIKKLLELFDSPDPRERDYLKTILHRIYGKF----PNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFA 207 (409)
T ss_dssp HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-----TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh----hhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccC
Confidence 456678888888888788889988888887644 3445566777777888888877777666778888888888521
Q ss_pred -hcCchHHHHHHHHhhHHHHHHhccccchhhhhHHHHHHHHHhhCCCCCCChhHHHhhhhhcCccccCCCCC---ccchh
Q psy9800 222 -KQNPEAVATFEQALFPIFQVIIQQDTLEFLPYTFQILSLLLEFRPRGSISAPYLELYPFLLSPVLWSRPGN---IHPLV 297 (486)
Q Consensus 222 -~~~p~~~~~~E~~L~P~~~~IL~~dv~EF~pYvfQIls~lle~~~~~~is~~y~~L~~~Ll~p~lWe~~gn---ip~lv 297 (486)
.-.++...-+..+|+|.. -.+....|.+-..+++.+.++..|+ +. -..+..|+. -|-. +| -....
T Consensus 208 ~plk~eh~~fl~~vllPLh---~~~~~~~y~~~L~~~~~~f~~kdp~--l~---~~~i~~llk--~WP~-t~s~Kev~FL 276 (409)
T PF01603_consen 208 VPLKEEHKQFLRKVLLPLH---KSPHLSSYHQQLSYCVVQFLEKDPS--LA---EPVIKGLLK--HWPK-TNSQKEVLFL 276 (409)
T ss_dssp SS--HHHHHHHHHTTGGGG---GSTGGGGTHHHHHHHHHHHHHH-GG--GH---HHHHHHHHH--HS-S-S-HHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHHHHhCch--hH---HHHHHHHHH--hCCC-CCchhHHHHH
Confidence 124455667788899963 3445556777666666677666653 32 234555565 6775 33 33345
Q ss_pred HHHHHhhcccCc-cccccccchhHHHHHHHHHHHHH
Q psy9800 298 RLLRAFITKSEP-SQFSATLKLNNVLGVFQKLIASK 332 (486)
Q Consensus 298 rlL~ayi~k~~~-~~~~~~~~l~~ilgifqkli~sk 332 (486)
..+...+.. -+ +.+. +...+++....+|++|.
T Consensus 277 ~el~~il~~-~~~~~f~--~i~~~lf~~la~ci~S~ 309 (409)
T PF01603_consen 277 NELEEILEV-LPPEEFQ--KIMVPLFKRLAKCISSP 309 (409)
T ss_dssp HHHHHHHTT---HHHHH--HHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHh-cCHHHHH--HHHHHHHHHHHHHhCCC
Confidence 555555555 33 2332 34566666666777666
No 40
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=78.41 E-value=58 Score=30.36 Aligned_cols=102 Identities=12% Similarity=0.119 Sum_probs=62.5
Q ss_pred ccCCcchhhHHHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCccHHH
Q psy9800 84 FQRLSSSKTAKYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEENEYA 163 (486)
Q Consensus 84 FRn~l~~~~llp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~eNeyl 163 (486)
.|-.--.+.++|.+..+|.|++..|+--|..++-+|+... .+++ =++++.+++.++.- +|+-+
T Consensus 17 ~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d------------~ik~-k~~l~~~~l~~l~D----~~~~I 79 (178)
T PF12717_consen 17 IRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILED------------MIKV-KGQLFSRILKLLVD----ENPEI 79 (178)
T ss_pred HhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC------------ceee-hhhhhHHHHHHHcC----CCHHH
Confidence 3443345677999999999999999999999999998632 1111 23445666667743 45544
Q ss_pred HHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHHhcCCCCCc
Q psy9800 164 MKCIMRSMSTLQDKVVPYLSDLLFQLTQRLAAAAKNPSKPN 204 (486)
Q Consensus 164 mk~imRii~~~~e~i~p~~~~l~~~L~~il~~v~kNpsnp~ 204 (486)
-..-...+..+...- .-..+.+.+.+++....+..+.|.
T Consensus 80 r~~A~~~~~e~~~~~--~~~~i~~~~~e~i~~l~~~~~~~~ 118 (178)
T PF12717_consen 80 RSLARSFFSELLKKR--NPNIIYNNFPELISSLNNCYEHPV 118 (178)
T ss_pred HHHHHHHHHHHHHhc--cchHHHHHHHHHHHHHhCcccccc
Confidence 444443333222221 223356666777777777665553
No 41
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=78.12 E-value=50 Score=30.65 Aligned_cols=131 Identities=13% Similarity=0.159 Sum_probs=80.0
Q ss_pred hhhHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhh--hhhhchHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHH
Q psy9800 138 APLAADLYKNLLVIFTRPGSEENEYAMKCIMRSMSTLQ--DKVVPYLSDLLFQLTQRLAAAAKNPSKPNYNHFLFEAITL 215 (486)
Q Consensus 138 ~p~~~~lL~~Lf~li~~~~~~eNeylmk~imRii~~~~--e~i~p~~~~l~~~L~~il~~v~kNpsnp~f~hylFEsi~~ 215 (486)
+..+..+.+.+.++++. ++.++-..-=|+.+++.... |-....+...++.|.++++. |+.+..-..+..+++.
T Consensus 20 ~~~l~~l~~ri~~LL~s-~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~----~~~~~~~~~ai~~L~~ 94 (165)
T PF08167_consen 20 KSALHKLVTRINSLLQS-KSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEK----PDPPSVLEAAIITLTR 94 (165)
T ss_pred HHHHHHHHHHHHHHhCC-CChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHHH
Confidence 44566677777777864 23455566666666666553 34446777777776666655 6656555777777777
Q ss_pred HHHHHHhcCchHHHHH----HHHhhHHHHHHhccccchhhhhHHHHHHHHHhhCCCCCCChhHHHh
Q psy9800 216 AIRIVCKQNPEAVATF----EQALFPIFQVIIQQDTLEFLPYTFQILSLLLEFRPRGSISAPYLEL 277 (486)
Q Consensus 216 lir~~~~~~p~~~~~~----E~~L~P~~~~IL~~dv~EF~pYvfQIls~lle~~~~~~is~~y~~L 277 (486)
+... ..+.|+...++ =..+.+.+-.+++. .+..+.+++.|+.++..+|. ..-|.+.++
T Consensus 95 l~~~-~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~pt-t~rp~~~ki 156 (165)
T PF08167_consen 95 LFDL-IRGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPT-TFRPFANKI 156 (165)
T ss_pred HHHH-hcCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCc-cccchHHHH
Confidence 7776 34555544333 12233333333332 46778889999999998885 555555444
No 42
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=77.81 E-value=38 Score=29.22 Aligned_cols=78 Identities=15% Similarity=0.183 Sum_probs=54.3
Q ss_pred chhhhhHHHHHHHHHHhhCC-CCC---CccHHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHHhcCCCCCcchhHHH
Q psy9800 135 DVLAPLAADLYKNLLVIFTR-PGS---EENEYAMKCIMRSMSTLQDKVVPYLSDLLFQLTQRLAAAAKNPSKPNYNHFLF 210 (486)
Q Consensus 135 ~~l~p~~~~lL~~Lf~li~~-~~~---~eNeylmk~imRii~~~~e~i~p~~~~l~~~L~~il~~v~kNpsnp~f~hylF 210 (486)
..++++.-.+++.+=..+.. .|+ .|-.-.++++.+++...++.+. ....|+.++++...+.| .+...+|
T Consensus 3 ~fL~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~----~~~pQI~a~L~sal~~~---~l~~~al 75 (107)
T PF08064_consen 3 DFLQPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHIS----SARPQIMACLQSALEIP---ELREEAL 75 (107)
T ss_pred HHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHHHhCCh---hhHHHHH
Confidence 45678888888888777754 222 2333677777777765555554 55566777777777776 5778899
Q ss_pred HHHHHHHHH
Q psy9800 211 EAITLAIRI 219 (486)
Q Consensus 211 Esi~~lir~ 219 (486)
++...+++.
T Consensus 76 ~~W~~fi~~ 84 (107)
T PF08064_consen 76 SCWNCFIKT 84 (107)
T ss_pred HHHHHHHHH
Confidence 999999998
No 43
>KOG0212|consensus
Probab=77.81 E-value=1.3e+02 Score=33.87 Aligned_cols=196 Identities=15% Similarity=0.213 Sum_probs=118.5
Q ss_pred hhHhhccCCcch---hhHHHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCC
Q psy9800 79 IFVLLFQRLSSS---KTAKYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRP 155 (486)
Q Consensus 79 Ky~~~FRn~l~~---~~llp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~ 155 (486)
.|+..-||.-.. ++..+.++.|+.+++.-.+.-|-+-|+-++.+- +.++-|++..+|.+++.++...
T Consensus 234 ~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~----------g~~~l~~~s~il~~iLpc~s~~ 303 (675)
T KOG0212|consen 234 EFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIP----------GRDLLLYLSGILTAILPCLSDT 303 (675)
T ss_pred HHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCC----------CcchhhhhhhhhhhcccCCCCC
Confidence 566666654332 233999999999999999999988888777653 4566799999999999999652
Q ss_pred CC---CccHHHHH-HHHHHHHHhh--hhhh--chHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHhcCchH
Q psy9800 156 GS---EENEYAMK-CIMRSMSTLQ--DKVV--PYLSDLLFQLTQRLAAAAKNPSKPNYNHFLFEAITLAIRIVCKQNPEA 227 (486)
Q Consensus 156 ~~---~eNeylmk-~imRii~~~~--e~i~--p~~~~l~~~L~~il~~v~kNpsnp~f~hylFEsi~~lir~~~~~~p~~ 227 (486)
+. .|-..... -+|.++...+ +++. +....+...|. + .+.|-=.+++--++.. ....|.-
T Consensus 304 e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~--------~----~~~~tri~~L~Wi~~l-~~~~p~q 370 (675)
T KOG0212|consen 304 EEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLS--------D----DREETRIAVLNWIILL-YHKAPGQ 370 (675)
T ss_pred ccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhh--------c----chHHHHHHHHHHHHHH-HhhCcch
Confidence 11 11122222 2333333222 2211 22222222222 1 1234444444444444 3356666
Q ss_pred HHHHHHHhhHHHHHHhccccchhhhhHHHHHHHHHhhCCCCCCChhHHHhhhhhcCccccCC-------CCCccchhHHH
Q psy9800 228 VATFEQALFPIFQVIIQQDTLEFLPYTFQILSLLLEFRPRGSISAPYLELYPFLLSPVLWSR-------PGNIHPLVRLL 300 (486)
Q Consensus 228 ~~~~E~~L~P~~~~IL~~dv~EF~pYvfQIls~lle~~~~~~is~~y~~L~~~Ll~p~lWe~-------~gnip~lvrlL 300 (486)
+--.-+.+|+.+..-|...-.|.+--++.++|-+... +-++.|.+....|++ +|.. +|| =++|=|
T Consensus 371 l~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s----~~~~~~~~fl~sLL~--~f~e~~~~l~~Rg~--lIIRql 442 (675)
T KOG0212|consen 371 LLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSS----SNSPNLRKFLLSLLE--MFKEDTKLLEVRGN--LIIRQL 442 (675)
T ss_pred hhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcC----cccccHHHHHHHHHH--HHhhhhHHHHhhhh--HHHHHH
Confidence 6667788999999999999889988666666655432 344577777777776 5543 344 356666
Q ss_pred HHhhc
Q psy9800 301 RAFIT 305 (486)
Q Consensus 301 ~ayi~ 305 (486)
+.++.
T Consensus 443 C~lL~ 447 (675)
T KOG0212|consen 443 CLLLN 447 (675)
T ss_pred HHHhC
Confidence 66553
No 44
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=76.45 E-value=44 Score=30.96 Aligned_cols=40 Identities=23% Similarity=0.341 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhhhhhhchHHH
Q psy9800 141 AADLYKNLLVIFTRPGSEENEYAMKCIMRSMSTLQDKVVPYLSD 184 (486)
Q Consensus 141 ~~~lL~~Lf~li~~~~~~eNeylmk~imRii~~~~e~i~p~~~~ 184 (486)
-++||.-|+++++. .++.-+=+..+|++..++ ++-||.-.
T Consensus 8 yP~LL~~L~~iLk~---e~s~~iR~E~lr~lGilG-ALDP~~~k 47 (160)
T PF11865_consen 8 YPELLDILLNILKT---EQSQSIRREALRVLGILG-ALDPYKHK 47 (160)
T ss_pred hHHHHHHHHHHHHh---CCCHHHHHHHHHHhhhcc-ccCcHHHh
Confidence 36899999999987 455778888999998764 55566433
No 45
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=74.68 E-value=32 Score=35.09 Aligned_cols=53 Identities=25% Similarity=0.427 Sum_probs=30.1
Q ss_pred hhHHHHHHhc----cccchhhhhHHHHHHHHHhhCCCCCCChhHHHhhhhhcCccccCCCCCccchhHHHHHh
Q psy9800 235 LFPIFQVIIQ----QDTLEFLPYTFQILSLLLEFRPRGSISAPYLELYPFLLSPVLWSRPGNIHPLVRLLRAF 303 (486)
Q Consensus 235 L~P~~~~IL~----~dv~EF~pYvfQIls~lle~~~~~~is~~y~~L~~~Ll~p~lWe~~gnip~lvrlL~ay 303 (486)
.++.+-..|. .+-.++.+.+.|.|+.|+. .+.|... .|+ .+.++.++++|...
T Consensus 147 ~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-------~~~~R~~--------f~~-~~~v~~l~~iL~~~ 203 (312)
T PF03224_consen 147 ALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-------SKEYRQV--------FWK-SNGVSPLFDILRKQ 203 (312)
T ss_dssp HHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-------SHHHHHH--------HHT-HHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-------cchhHHH--------HHh-cCcHHHHHHHHHhh
Confidence 3354444444 4555778888999999872 3446655 466 46677777777533
No 46
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=70.40 E-value=94 Score=35.89 Aligned_cols=145 Identities=18% Similarity=0.308 Sum_probs=89.1
Q ss_pred HHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHH
Q psy9800 94 KYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEENEYAMKCIMRSMST 173 (486)
Q Consensus 94 lp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~eNeylmk~imRii~~ 173 (486)
++.++++|.+++..+..-|..++++|-..+++ ++.+. ...++..|.+++.. +|+.+++...|++..
T Consensus 292 V~~Lv~~Ldr~n~ellil~v~fLkkLSi~~EN--------K~~m~--~~giV~kL~kLl~s----~~~~l~~~aLrlL~N 357 (708)
T PF05804_consen 292 VSLLVKCLDRENEELLILAVTFLKKLSIFKEN--------KDEMA--ESGIVEKLLKLLPS----ENEDLVNVALRLLFN 357 (708)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH--------HHHHH--HcCCHHHHHHHhcC----CCHHHHHHHHHHHHH
Confidence 99999999999999999999999998877762 55553 33466777777764 778899999999886
Q ss_pred hhhh--hhchHHH--HHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHhcCchHHHHH-HHHhhHHHHHHhccccc
Q psy9800 174 LQDK--VVPYLSD--LLFQLTQRLAAAAKNPSKPNYNHFLFEAITLAIRIVCKQNPEAVATF-EQALFPIFQVIIQQDTL 248 (486)
Q Consensus 174 ~~e~--i~p~~~~--l~~~L~~il~~v~kNpsnp~f~hylFEsi~~lir~~~~~~p~~~~~~-E~~L~P~~~~IL~~dv~ 248 (486)
+.-+ +.+.... ++++|+..+ ++ |.+.++ +++++-..+ .+.+.-..| +.-++|.+..+|-....
T Consensus 358 LSfd~~~R~~mV~~GlIPkLv~LL----~d---~~~~~v---al~iLy~LS--~dd~~r~~f~~TdcIp~L~~~Ll~~~~ 425 (708)
T PF05804_consen 358 LSFDPELRSQMVSLGLIPKLVELL----KD---PNFREV---ALKILYNLS--MDDEARSMFAYTDCIPQLMQMLLENSE 425 (708)
T ss_pred hCcCHHHHHHHHHCCCcHHHHHHh----CC---CchHHH---HHHHHHHhc--cCHhhHHHHhhcchHHHHHHHHHhCCC
Confidence 6532 3333322 555555544 33 444454 344444442 233344444 22356766555444333
Q ss_pred hhhhhHHHHHHHHHhhCC
Q psy9800 249 EFLPYTFQILSLLLEFRP 266 (486)
Q Consensus 249 EF~pYvfQIls~lle~~~ 266 (486)
+=++ .+.+++++.+..
T Consensus 426 ~~v~--~eliaL~iNLa~ 441 (708)
T PF05804_consen 426 EEVQ--LELIALLINLAL 441 (708)
T ss_pred cccc--HHHHHHHHHHhc
Confidence 3222 256777776643
No 47
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=69.95 E-value=83 Score=30.00 Aligned_cols=151 Identities=12% Similarity=0.133 Sum_probs=87.4
Q ss_pred HHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHH
Q psy9800 94 KYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEENEYAMKCIMRSMST 173 (486)
Q Consensus 94 lp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~eNeylmk~imRii~~ 173 (486)
+..+..++.|...-|..-|..++..+...- +..+.|++..++..|++.+.. .|.++-.+.++.+..
T Consensus 55 ~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l----------~~~~~~~~~~~l~~Ll~~~~~----~~~~i~~~a~~~L~~ 120 (228)
T PF12348_consen 55 LDAIIKQLSDLRSKVSKTACQLLSDLARQL----------GSHFEPYADILLPPLLKKLGD----SKKFIREAANNALDA 120 (228)
T ss_dssp -HHHHH-S-HH---HHHHHHHHHHHHHHHH----------GGGGHHHHHHHHHHHHHGGG-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHH----------hHhHHHHHHHHHHHHHHHHcc----ccHHHHHHHHHHHHH
Confidence 467888999988888889999999887654 344899999999999999975 567777777777776
Q ss_pred hhhhhhchHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHhcCchHHHHH--HHHhhHHHHHHhccccchhh
Q psy9800 174 LQDKVVPYLSDLLFQLTQRLAAAAKNPSKPNYNHFLFEAITLAIRIVCKQNPEAVATF--EQALFPIFQVIIQQDTLEFL 251 (486)
Q Consensus 174 ~~e~i~p~~~~l~~~L~~il~~v~kNpsnp~f~hylFEsi~~lir~~~~~~p~~~~~~--E~~L~P~~~~IL~~dv~EF~ 251 (486)
+-+.+. +...++ ...+....++ .||.--.++.+.+..++... ..+.+.+..- =+.+.|.+...++.--.|.=
T Consensus 121 i~~~~~-~~~~~~---~~~l~~~~~~-Kn~~vR~~~~~~l~~~l~~~-~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR 194 (228)
T PF12348_consen 121 IIESCS-YSPKIL---LEILSQGLKS-KNPQVREECAEWLAIILEKW-GSDSSVLQKSAFLKQLVKALVKLLSDADPEVR 194 (228)
T ss_dssp HHTTS--H--HHH---HHHHHHHTT--S-HHHHHHHHHHHHHHHTT------GGG--HHHHHHHHHHHHHHHTSS-HHHH
T ss_pred HHHHCC-cHHHHH---HHHHHHHHhC-CCHHHHHHHHHHHHHHHHHc-cchHhhhcccchHHHHHHHHHHHCCCCCHHHH
Confidence 666654 222221 2233333333 44666677888887777762 2111222111 14456666666665555666
Q ss_pred hhHHHHHHHHHhh
Q psy9800 252 PYTFQILSLLLEF 264 (486)
Q Consensus 252 pYvfQIls~lle~ 264 (486)
.+.-+.+..+.+.
T Consensus 195 ~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 195 EAARECLWALYSH 207 (228)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666665544
No 48
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=67.35 E-value=6.1 Score=27.62 Aligned_cols=26 Identities=27% Similarity=0.268 Sum_probs=24.7
Q ss_pred HHHHHhhccCCCCcHHHHHHHHHHHH
Q psy9800 94 KYSKVSHLESAHPVVHSYASHAIDRV 119 (486)
Q Consensus 94 lp~l~~~L~~~~~vV~tyAA~aIerl 119 (486)
+|.++++|.+++.-|+..|+.|+..|
T Consensus 14 i~~Lv~ll~~~~~~v~~~a~~al~nl 39 (41)
T PF00514_consen 14 IPPLVQLLKSPDPEVQEEAAWALGNL 39 (41)
T ss_dssp HHHHHHHTTSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999865
No 49
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=63.30 E-value=60 Score=26.72 Aligned_cols=73 Identities=21% Similarity=0.187 Sum_probs=45.4
Q ss_pred HHHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHH
Q psy9800 93 AKYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEENEYAMKCIMRSMS 172 (486)
Q Consensus 93 llp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~eNeylmk~imRii~ 172 (486)
.++.++.+|.+++.-++..|+.|+..+-...+.. . ...++ ...+..+.+++.. +|..+.+.....+.
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~-~-----~~~~~---~~~i~~l~~~l~~----~~~~v~~~a~~~L~ 74 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDN-I-----QAVVE---AGGLPALVQLLKS----EDEEVVKAALWALR 74 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHH-H-----HHHHH---CCChHHHHHHHhC----CCHHHHHHHHHHHH
Confidence 4889999999999999999999999876642211 0 11111 1444555555553 35556666555555
Q ss_pred Hhhhhh
Q psy9800 173 TLQDKV 178 (486)
Q Consensus 173 ~~~e~i 178 (486)
.+...-
T Consensus 75 ~l~~~~ 80 (120)
T cd00020 75 NLAAGP 80 (120)
T ss_pred HHccCc
Confidence 554443
No 50
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=62.22 E-value=7.4 Score=28.79 Aligned_cols=28 Identities=14% Similarity=0.141 Sum_probs=24.6
Q ss_pred hHHHHHHhhccCCCCcHHHHHHHHHHHH
Q psy9800 92 TAKYSKVSHLESAHPVVHSYASHAIDRV 119 (486)
Q Consensus 92 ~llp~l~~~L~~~~~vV~tyAA~aIerl 119 (486)
.++|.+...|.|++.-|+.-|+.|+.+|
T Consensus 28 ~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 28 ELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 3499999999998889999999999864
No 51
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=62.05 E-value=25 Score=32.56 Aligned_cols=72 Identities=21% Similarity=0.373 Sum_probs=47.9
Q ss_pred HHHHHHHhhCCCCC-CccHHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHH
Q psy9800 144 LYKNLLVIFTRPGS-EENEYAMKCIMRSMSTLQDKVVPYLSDLLFQLTQRLAAAAKNPSKPNYNHFLFEAITLAIRIV 220 (486)
Q Consensus 144 lL~~Lf~li~~~~~-~eNeylmk~imRii~~~~e~i~p~~~~l~~~L~~il~~v~kNpsnp~f~hylFEsi~~lir~~ 220 (486)
.+..|.++++.+.. ..=.-++.++|-|+...+-.+.||...+++.+...+. +..+ +...++|.-++.+++++
T Consensus 87 vi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~----~~~~-~~~e~~~~qL~~lv~iv 159 (160)
T PF11865_consen 87 VINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIR----TCPD-SLREFYFQQLADLVSIV 159 (160)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHH----hCCH-HHHHHHHHHHHHHHHHh
Confidence 44556666654332 2333678888888888887788887777776654444 4333 66788888888888873
No 52
>KOG1077|consensus
Probab=61.58 E-value=1.9e+02 Score=33.39 Aligned_cols=147 Identities=20% Similarity=0.191 Sum_probs=85.1
Q ss_pred HHhhccccCCCCCCCCCccccchhhh----hhHhhccC---CcchhhHHHHHHhhccCCCCcHHHHHHHHHHHHHcccCC
Q psy9800 53 QQHIFPELNKPDELCPNELLSPHLKQ----IFVLLFQR---LSSSKTAKYSKVSHLESAHPVVHSYASHAIDRVLVMRSP 125 (486)
Q Consensus 53 ~~~V~PeL~~~~~~~~~~~~~piLka----Ky~~~FRn---~l~~~~llp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~ 125 (486)
..-|---|.|++. . +++|- -++--||+ ..++..|...++++|.|.++=|-+=|.--||-|. .+.
T Consensus 148 ~~DI~KlLvS~~~-----~--~~vkqkaALclL~L~r~spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lv-k~~- 218 (938)
T KOG1077|consen 148 ADDIPKLLVSGSS-----M--DYVKQKAALCLLRLFRKSPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALV-KKN- 218 (938)
T ss_pred hhhhHHHHhCCcc-----h--HHHHHHHHHHHHHHHhcCccccChhhHHHHHHHHhCccccceeeehHHHHHHHH-HcC-
Confidence 3334345566642 2 67776 34456665 4566677999999999999999888887788444 332
Q ss_pred CCCCcccccchhhhhHHHHHHHHHHhhCCCCC---------CccHHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHH
Q psy9800 126 NGQGTLVTADVLAPLAADLYKNLLVIFTRPGS---------EENEYAMKCIMRSMSTLQDKVVPYLSDLLFQLTQRLAAA 196 (486)
Q Consensus 126 ~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~---------~eNeylmk~imRii~~~~e~i~p~~~~l~~~L~~il~~v 196 (486)
+++-+..++.-+..|-++....+. ..|..|--=+||+++.+.-.= -.....+|.+++.++
T Consensus 219 --------p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~---D~~~r~~l~evl~~i 287 (938)
T KOG1077|consen 219 --------PESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPE---DPSTRARLNEVLERI 287 (938)
T ss_pred --------CHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCC---CchHHHHHHHHHHHH
Confidence 334444455555566555544433 355667777788887762111 112223333333333
Q ss_pred hcCCC------CC----cchhHHHHHHHHHHHH
Q psy9800 197 AKNPS------KP----NYNHFLFEAITLAIRI 219 (486)
Q Consensus 197 ~kNps------np----~f~hylFEsi~~lir~ 219 (486)
..-+. |+ .-|--+||+|+.++..
T Consensus 288 Lnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~ 320 (938)
T KOG1077|consen 288 LNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHL 320 (938)
T ss_pred HhccccCccccchHhhhhHHHHHHHHHHHHHHc
Confidence 21111 11 1245789999988876
No 53
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=61.39 E-value=79 Score=24.94 Aligned_cols=87 Identities=14% Similarity=0.192 Sum_probs=53.4
Q ss_pred HHHHHhhc-cCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHH
Q psy9800 94 KYSKVSHL-ESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEENEYAMKCIMRSMS 172 (486)
Q Consensus 94 lp~l~~~L-~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~eNeylmk~imRii~ 172 (486)
+|.+++.| .+++.-|+..|+.++.++ + .. ..+.-|..+++ .+|..+=...-+.+.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~---~----------~~-------~~~~~L~~~l~----d~~~~vr~~a~~aL~ 56 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGEL---G----------DP-------EAIPALIELLK----DEDPMVRRAAARALG 56 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC---T----------HH-------HHHHHHHHHHT----SSSHHHHHHHHHHHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHc---C----------CH-------hHHHHHHHHHc----CCCHHHHHHHHHHHH
Confidence 57888988 889999999999998821 1 11 33445555553 477777777777776
Q ss_pred HhhhhhhchHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHH
Q psy9800 173 TLQDKVVPYLSDLLFQLTQRLAAAAKNPSKPNYNHFLFEAIT 214 (486)
Q Consensus 173 ~~~e~i~p~~~~l~~~L~~il~~v~kNpsnp~f~hylFEsi~ 214 (486)
.+++ +.....+.+..++++++.--+-+.+++|
T Consensus 57 ~i~~----------~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 57 RIGD----------PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp CCHH----------HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HhCC----------HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 5542 2333445556666655433355555554
No 54
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=58.97 E-value=1e+02 Score=25.34 Aligned_cols=52 Identities=10% Similarity=-0.010 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhcCchHHHHHH-HHhhHHHHHHhccccchhhhhHHHHHHHHH
Q psy9800 210 FEAITLAIRIVCKQNPEAVATFE-QALFPIFQVIIQQDTLEFLPYTFQILSLLL 262 (486)
Q Consensus 210 FEsi~~lir~~~~~~p~~~~~~E-~~L~P~~~~IL~~dv~EF~pYvfQIls~ll 262 (486)
..++.++-++ +...++....+. .-+.|.+...|+.+-.+..+++..+|+.+.
T Consensus 67 ~~a~~~L~~l-~~~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 67 KAALWALRNL-AAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHHH-ccCcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 3444444444 555545444444 348899999998887788888888877664
No 55
>KOG1241|consensus
Probab=58.72 E-value=3.5e+02 Score=31.53 Aligned_cols=165 Identities=16% Similarity=0.200 Sum_probs=93.2
Q ss_pred HHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCccH---HHHHHHHHH
Q psy9800 94 KYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEENE---YAMKCIMRS 170 (486)
Q Consensus 94 lp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~eNe---ylmk~imRi 170 (486)
++.+++.|.| +.=|-+=++.|+..|-..--.....+ =..+...|+-+.|++.|++.-+..+..||- -.-.++|-+
T Consensus 451 l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~-~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmEl 528 (859)
T KOG1241|consen 451 LSALLEGLND-EPRVASNVCWAFISLAEAAYEAAVSN-GQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMEL 528 (859)
T ss_pred HHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccCC-CCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHH
Confidence 6666666655 45566777788877762211100000 001122399999999999998775544443 455688989
Q ss_pred HHHhhhhhhchHHHHHHHHHHHHHHHhc---CCCCCcchh-----HHHHHHHHHHHHHHhcCchHHHHHHHHhhHHHHHH
Q psy9800 171 MSTLQDKVVPYLSDLLFQLTQRLAAAAK---NPSKPNYNH-----FLFEAITLAIRIVCKQNPEAVATFEQALFPIFQVI 242 (486)
Q Consensus 171 i~~~~e~i~p~~~~l~~~L~~il~~v~k---Npsnp~f~h-----ylFEsi~~lir~~~~~~p~~~~~~E~~L~P~~~~I 242 (486)
+-...+++.|....++......+.+... ..-..+-.| -+.-+++.++|.+-.. ..+.-+.++..|-.|
T Consensus 529 Ik~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~----~~~~~d~iM~lflri 604 (859)
T KOG1241|consen 529 IKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSD----IREVSDQIMGLFLRI 604 (859)
T ss_pred HHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHcccc----chhHHHHHHHHHHHH
Confidence 9888899888876655555554444432 111122233 3455667777774332 333444566666666
Q ss_pred hcc-ccchhhhhHHHHHHHHHhh
Q psy9800 243 IQQ-DTLEFLPYTFQILSLLLEF 264 (486)
Q Consensus 243 L~~-dv~EF~pYvfQIls~lle~ 264 (486)
++. +-.-.-+.+|=-.+-|.+.
T Consensus 605 ~~s~~s~~v~e~a~laV~tl~~~ 627 (859)
T KOG1241|consen 605 FESKRSAVVHEEAFLAVSTLAES 627 (859)
T ss_pred HcCCccccchHHHHHHHHHHHHH
Confidence 666 3222344556555555544
No 56
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=57.64 E-value=3.5e+02 Score=31.18 Aligned_cols=65 Identities=22% Similarity=0.226 Sum_probs=45.1
Q ss_pred HHHHHHHhhccccCCCCCCCCCccccchhhhhhHhhccCCcchh------hHHHHHHhhccCCCCcHHHHHHHHHHHHHc
Q psy9800 48 LEDFAQQHIFPELNKPDELCPNELLSPHLKQIFVLLFQRLSSSK------TAKYSKVSHLESAHPVVHSYASHAIDRVLV 121 (486)
Q Consensus 48 v~~ff~~~V~PeL~~~~~~~~~~~~~piLkaKy~~~FRn~l~~~------~llp~l~~~L~~~~~vV~tyAA~aIerlL~ 121 (486)
+..+|+----|++-..+ +.+|..|-..|+...++. ..+|.++.+|-+++..++-+|...++|+-.
T Consensus 79 ~~aiyE~L~~p~lLr~~---------~~l~~~F~~~f~~~~~~~~~~~~~~~lPG~~~~Lf~~~~~~r~WA~~~~~~l~~ 149 (727)
T PF12726_consen 79 LLAIYECLCNPALLRDD---------EELRELFDAIFSSLQSKKPLKLPKELLPGMTYFLFDGNPERRRWAERWWQRLKR 149 (727)
T ss_pred HHHHHHHHhCHHHHcCc---------HHHHHHHHHHHHHHhccCCccccccccchhhhhhhcCCHHHHHHHHHHHHHcCC
Confidence 44555544445554322 456666666676655443 348999999999999999999999998754
No 57
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=56.63 E-value=1.7e+02 Score=27.22 Aligned_cols=84 Identities=18% Similarity=0.250 Sum_probs=56.7
Q ss_pred cHHHHHHHhhccccCCCCCCCCCccccchhhhhhHhhccCC-----c-chhhHHHHHHhhccCCCCcHHHHHHHHHHHHH
Q psy9800 47 NLEDFAQQHIFPELNKPDELCPNELLSPHLKQIFVLLFQRL-----S-SSKTAKYSKVSHLESAHPVVHSYASHAIDRVL 120 (486)
Q Consensus 47 ~v~~ff~~~V~PeL~~~~~~~~~~~~~piLkaKy~~~FRn~-----l-~~~~llp~l~~~L~~~~~vV~tyAA~aIerlL 120 (486)
++.+=+..++..-|.+++ |.+|-.-+..+..- + .+.+++..+..+|.|++.-|+..|..++..+.
T Consensus 21 ~~ve~~~~~l~~~L~D~~---------~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~ 91 (178)
T PF12717_consen 21 NLVEPYLPNLYKCLRDED---------PLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPEIRSLARSFFSELL 91 (178)
T ss_pred HHHHhHHHHHHHHHCCCC---------HHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 577777888888888765 66776222111111 1 12234688888999999999999999999998
Q ss_pred cccCCCCCCcccccchhhhhHHHHHHHH
Q psy9800 121 VMRSPNGQGTLVTADVLAPLAADLYKNL 148 (486)
Q Consensus 121 ~~k~~~~~~~~~~~~~l~p~~~~lL~~L 148 (486)
..++ +..+...+.+++..|
T Consensus 92 ~~~~---------~~~i~~~~~e~i~~l 110 (178)
T PF12717_consen 92 KKRN---------PNIIYNNFPELISSL 110 (178)
T ss_pred Hhcc---------chHHHHHHHHHHHHH
Confidence 8764 334455555555555
No 58
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=55.70 E-value=91 Score=26.29 Aligned_cols=66 Identities=14% Similarity=0.208 Sum_probs=43.6
Q ss_pred HHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHH
Q psy9800 94 KYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEENEYAMKCIMRSMST 173 (486)
Q Consensus 94 lp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~eNeylmk~imRii~~ 173 (486)
+......|.|+..||+.+|=..+.+++..+.. +. ..++.++.-++..++. +-.|+==...+.+..
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~-------~~----~~~~~il~l~l~~L~d----~DsyVYL~aI~~L~~ 69 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKSE-------PV----IDIPKILDLFLSQLKD----EDSYVYLNAIKGLAA 69 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCCc-------ch----hhHHHHHHHHHHHcCC----CCchHHHHHHHHHHH
Confidence 56677889999999999999999999986640 12 2345566666666655 234554444444443
Q ss_pred h
Q psy9800 174 L 174 (486)
Q Consensus 174 ~ 174 (486)
+
T Consensus 70 L 70 (92)
T PF10363_consen 70 L 70 (92)
T ss_pred H
Confidence 3
No 59
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=53.24 E-value=5.6e+02 Score=33.59 Aligned_cols=180 Identities=17% Similarity=0.199 Sum_probs=87.7
Q ss_pred HHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHH
Q psy9800 94 KYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEENEYAMKCIMRSMST 173 (486)
Q Consensus 94 lp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~eNeylmk~imRii~~ 173 (486)
+|.++.+|.+.+..+...||.||-.+......++...+.....+. -|.++++.++..--+-.+.++..++..
T Consensus 653 IpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~--------pL~~LL~~~d~~v~e~Al~ALanLl~~ 724 (2102)
T PLN03200 653 INPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIK--------PLIKLAKSSSIEVAEQAVCALANLLSD 724 (2102)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHH--------HHHHHHhCCChHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999998633221000112222222 233444432112223344444444432
Q ss_pred hhhhhhch-HHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHhcCc--hHH---HHHHHHhhHHHHHHhcccc
Q psy9800 174 LQDKVVPY-LSDLLFQLTQRLAAAAKNPSKPNYNHFLFEAITLAIRIVCKQNP--EAV---ATFEQALFPIFQVIIQQDT 247 (486)
Q Consensus 174 ~~e~i~p~-~~~l~~~L~~il~~v~kNpsnp~f~hylFEsi~~lir~~~~~~p--~~~---~~~E~~L~P~~~~IL~~dv 247 (486)
-. ....+ ....+..|+..+++ .+ |.--+. +.+++.+. |...| +.+ .+-.+++ +++-..|+..-
T Consensus 725 ~e-~~~ei~~~~~I~~Lv~lLr~--G~---~~~k~~---Aa~AL~~L-~~~~~~~~~~~~~~~~~g~v-~~l~~~L~~~~ 793 (2102)
T PLN03200 725 PE-VAAEALAEDIILPLTRVLRE--GT---LEGKRN---AARALAQL-LKHFPVDDVLKDSVQCRGTV-LALVDLLNSTD 793 (2102)
T ss_pred ch-HHHHHHhcCcHHHHHHHHHh--CC---hHHHHH---HHHHHHHH-HhCCChhHHHHHHHHHhCcH-HHHHHHHhcCC
Confidence 21 11111 12234444444432 22 221222 33444444 44333 111 1223334 44555665554
Q ss_pred chhhh--hHHHHHHHHHhhCCCCCCChhHHHhhhhhcCccccCCCCCccchhHHH
Q psy9800 248 LEFLP--YTFQILSLLLEFRPRGSISAPYLELYPFLLSPVLWSRPGNIHPLVRLL 300 (486)
Q Consensus 248 ~EF~p--YvfQIls~lle~~~~~~is~~y~~L~~~Ll~p~lWe~~gnip~lvrlL 300 (486)
.|-.. .+++.|+.|.....+++.++.=|.. +-|.++.+.++|++|
T Consensus 794 ~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~--------~~e~p~~l~~l~~~l 840 (2102)
T PLN03200 794 LDSSATSEALEALALLARTKGGANFSHPPWAV--------LAEVPSSLEPLVRCL 840 (2102)
T ss_pred cchhhHHHHHHHHHHHHhhcccCCCCCCchhh--------HHhccCchHHHHHHH
Confidence 45444 3899999998753321222211111 234567777888877
No 60
>KOG1248|consensus
Probab=52.91 E-value=5.1e+02 Score=31.64 Aligned_cols=178 Identities=18% Similarity=0.245 Sum_probs=101.2
Q ss_pred CCCCCcchhHHHHHHHHHHHHH--Hh--cCchHHHHHHHHhhHHHHHHhccccchhhhh-HHHHHHHHHhhCCCCCCChh
Q psy9800 199 NPSKPNYNHFLFEAITLAIRIV--CK--QNPEAVATFEQALFPIFQVIIQQDTLEFLPY-TFQILSLLLEFRPRGSISAP 273 (486)
Q Consensus 199 Npsnp~f~hylFEsi~~lir~~--~~--~~p~~~~~~E~~L~P~~~~IL~~dv~EF~pY-vfQIls~lle~~~~~~is~~ 273 (486)
++-|-.-.|--|+++-.+-++. .. .+| ....+++. ++++..=|-.|.+-..-+ .+++-..+-|+.. .+++.
T Consensus 748 Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~-~~~~lnef-l~~Isagl~gd~~~~~as~Ivai~~il~e~~~--~ld~~ 823 (1176)
T KOG1248|consen 748 KEVNVKARRNAFALLVFIGAIQSSLDDGNEP-ASAILNEF-LSIISAGLVGDSTRVVASDIVAITHILQEFKN--ILDDE 823 (1176)
T ss_pred ccccHHHHhhHHHHHHHHHHHHhhhcccccc-hHHHHHHH-HHHHHhhhcccHHHHHHHHHHHHHHHHHHHhc--cccHH
Confidence 5555555566677665555331 11 233 12233332 233334467788877777 7777777777754 35554
Q ss_pred HHHhhhhhcCc-cccCCCCC---ccchhHHHHHhhcccCccccccccchhHHHHHHHHHHHHHHHHHHHHHhhcCCcchh
Q psy9800 274 YLELYPFLLSP-VLWSRPGN---IHPLVRLLRAFITKSEPSQFSATLKLNNVLGVFQKLIASKIFVLLFQRLSSSKTAKY 349 (486)
Q Consensus 274 y~~L~~~Ll~p-~lWe~~gn---ip~lvrlL~ayi~k~~~~~~~~~~~l~~ilgifqkli~skI~~lll~RLq~~kt~k~ 349 (486)
+ ++.+++. .+|-..++ +-+-++++..++.+ .|...+. .+++.+| ..+|. +..-.+.++
T Consensus 824 ~---l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~-~pe~~l~-~~~~~LL------------~sll~-ls~d~k~~~ 885 (1176)
T KOG1248|consen 824 T---LEKLISMVCLYLASNSREIAKAAIGFIKVLVYK-FPEECLS-PHLEELL------------PSLLA-LSHDHKIKV 885 (1176)
T ss_pred H---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHc-CCHHHHh-hhHHHHH------------HHHHH-HHHhhhHHH
Confidence 3 2333332 35554332 66678888888888 8876654 2344333 22222 333233455
Q ss_pred HHHHHHHHHHHHHhhChHHHHHHHHhhhcchhHHHHHHHhhcccccccCcchhhhHHH
Q psy9800 350 SKGLVTFLMFYVINMGATSLIQLIDSIQGSLFSMVAEKLILADLQKVSGAVNRKIAAF 407 (486)
Q Consensus 350 ~k~~v~f~~~~~~~yg~~~li~~ld~iQ~glf~~i~~~~~lp~~~~~~~~~dRKi~~v 407 (486)
.+..-.++=-++-++|++.+=..++. -..-||+++.|..+...||....
T Consensus 886 r~Kvr~LlekLirkfg~~eLe~~~pe---------e~~klL~nIRK~r~R~~rK~a~~ 934 (1176)
T KOG1248|consen 886 RKKVRLLLEKLIRKFGAEELESFLPE---------EDMKLLTNIRKRRRRKKRKKAMI 934 (1176)
T ss_pred HHHHHHHHHHHHHHhCHHHHHhhCHH---------HHHHHHHHHHHHHHHhhhhhhhh
Confidence 55555566666677888777666553 24467888889888888886653
No 61
>KOG0915|consensus
Probab=52.57 E-value=5.8e+02 Score=32.20 Aligned_cols=354 Identities=16% Similarity=0.175 Sum_probs=191.3
Q ss_pred hhhhHHHHHHHHHhhcccccccccccccccccHHHHHHHhhccccCCCCCCCCCccccchhhh-----hhHhhccCCcch
Q psy9800 16 KYKDTAIYLVTSLASQGSTVKHGTTKSSTLVNLEDFAQQHIFPELNKPDELCPNELLSPHLKQ-----IFVLLFQRLSSS 90 (486)
Q Consensus 16 r~KD~Ai~Lv~sla~~~~t~~~Gvt~~n~lv~v~~ff~~~V~PeL~~~~~~~~~~~~~piLka-----Ky~~~FRn~l~~ 90 (486)
.+|-||=|=+++||.+.. -.++.|+.+ ++|-|-.= .|.|+. .+-+| +-+++=|....-
T Consensus 972 nSk~GaAfGf~~i~~~a~------------~kl~p~l~k-LIPrLyRY-~yDP~~---~Vq~aM~sIW~~Li~D~k~~vd 1034 (1702)
T KOG0915|consen 972 NSKKGAAFGFGAIAKQAG------------EKLEPYLKK-LIPRLYRY-QYDPDK---KVQDAMTSIWNALITDSKKVVD 1034 (1702)
T ss_pred hcccchhhchHHHHHHHH------------HhhhhHHHH-hhHHHhhh-ccCCcH---HHHHHHHHHHHHhccChHHHHH
Confidence 778888888888887762 147777755 56777421 122221 23333 222332222222
Q ss_pred hh---HHHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCccHHHHHHH
Q psy9800 91 KT---AKYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEENEYAMKCI 167 (486)
Q Consensus 91 ~~---llp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~eNeylmk~i 167 (486)
+. ++.-+...|.+.+.=|+-=++.|+--||.-++ -+++.-.++.+...+|+.|+-
T Consensus 1035 ~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~---------~~~~~e~lpelw~~~fRvmDD------------- 1092 (1702)
T KOG0915|consen 1035 EYLNEILDELLVNLTSKEWRVREASCLALADLLQGRP---------FDQVKEKLPELWEAAFRVMDD------------- 1092 (1702)
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCC---------hHHHHHHHHHHHHHHHHHHHH-------------
Confidence 22 27788889999999999999999988887543 455666777777777777654
Q ss_pred HHHHHHhhhhhhchHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHhcCchHHHHHHHHhhHHH--HHHhcc
Q psy9800 168 MRSMSTLQDKVVPYLSDLLFQLTQRLAAAAKNPSKPNYNHFLFEAITLAIRIVCKQNPEAVATFEQALFPIF--QVIIQQ 245 (486)
Q Consensus 168 mRii~~~~e~i~p~~~~l~~~L~~il~~v~kNpsnp~f~hylFEsi~~lir~~~~~~p~~~~~~E~~L~P~~--~~IL~~ 245 (486)
.+|.+...+.-.+.-|+.+..++|+- .|+ ..-.++-++++|-+ .+|+ .
T Consensus 1093 ------IKEsVR~aa~~~~~~lsKl~vr~~d~-~~~----------------------~~~~~~l~~iLPfLl~~gim-s 1142 (1702)
T KOG0915|consen 1093 ------IKESVREAADKAARALSKLCVRICDV-TNG----------------------AKGKEALDIILPFLLDEGIM-S 1142 (1702)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHhhhccc-CCc----------------------ccHHHHHHHHHHHHhccCcc-c
Confidence 66777766766777777666666543 332 12233334444432 2445 6
Q ss_pred ccchhhhhHHHHHHHHHhhCCCCCCChhHHHhhhhhcCccccCCCCCccch---------------hHHHHHhhcccCcc
Q psy9800 246 DTLEFLPYTFQILSLLLEFRPRGSISAPYLELYPFLLSPVLWSRPGNIHPL---------------VRLLRAFITKSEPS 310 (486)
Q Consensus 246 dv~EF~pYvfQIls~lle~~~~~~is~~y~~L~~~Ll~p~lWe~~gnip~l---------------vrlL~ayi~k~~~~ 310 (486)
+|.|.--+..-.+.-|....++ .+-|..-.|.|.|++. ... +=|-. +--+++=+.|
T Consensus 1143 ~v~evr~~si~tl~dl~Kssg~-~lkP~~~~LIp~ll~~--~s~--lE~~vLnYls~r~~~~e~ealDt~R~s~ak---- 1213 (1702)
T KOG0915|consen 1143 KVNEVRRFSIGTLMDLAKSSGK-ELKPHFPKLIPLLLNA--YSE--LEPQVLNYLSLRLINIETEALDTLRASAAK---- 1213 (1702)
T ss_pred chHHHHHHHHHHHHHHHHhchh-hhcchhhHHHHHHHHH--ccc--cchHHHHHHHHhhhhhHHHHHHHHHHhhhc----
Confidence 6667666666666666655554 5666666666666652 110 00111 1111111222
Q ss_pred ccccccchhHHHHHHHHHHHHH---HHHHHHHHh----hcCCcchhHHHHHHHHHHHHHhhChHHHHHHHHhhhcchhHH
Q psy9800 311 QFSATLKLNNVLGVFQKLIASK---IFVLLFQRL----SSSKTAKYSKGLVTFLMFYVINMGATSLIQLIDSIQGSLFSM 383 (486)
Q Consensus 311 ~~~~~~~l~~ilgifqkli~sk---I~~lll~RL----q~~kt~k~~k~~v~f~~~~~~~yg~~~li~~ld~iQ~glf~~ 383 (486)
-.++..-..+||..- ++.=+-.|+ .++-.---.-....|+|+.+.+||.+.. | ..++
T Consensus 1214 -------sspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emt--------P-~sgK 1277 (1702)
T KOG0915|consen 1214 -------SSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMT--------P-YSGK 1277 (1702)
T ss_pred -------CCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccC--------c-chhH
Confidence 112222233444322 333344443 2221111122446677888887765432 2 1233
Q ss_pred HHHHHhhcccccccCcchhhhHHHHHHHHhhhhccccCCCCCc-hhHHHHHHHHhcCCCCCCC--CCC--Cccc--chhh
Q psy9800 384 VAEKLILADLQKVSGAVNRKIAAFGLAKLLTEAKEVTEGPYVQ-APLTGALLNLIQLPEDDST--QPE--DHFV--DIEN 456 (486)
Q Consensus 384 i~~~~~lp~~~~~~~~~dRKi~~vgl~~lL~~~~~~~~~~~~~-~~ll~~l~~ll~~p~~~~~--~~~--~~~~--~~~~ 456 (486)
++. ..+|.++. .+...||.++.++..|+--+.. ++ -.+++.++..+-.+.++.. .-. -+.. ..+.
T Consensus 1278 ll~-al~~g~~d-RNesv~kafAsAmG~L~k~Ss~------dq~qKLie~~l~~~l~k~es~~siscatis~Ian~s~e~ 1349 (1702)
T KOG0915|consen 1278 LLR-ALFPGAKD-RNESVRKAFASAMGYLAKFSSP------DQMQKLIETLLADLLGKDESLKSISCATISNIANYSQEM 1349 (1702)
T ss_pred HHH-HHhhcccc-ccHHHHHHHHHHHHHHHhcCCh------HHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHhhHHH
Confidence 433 56777777 5789999999999999875332 11 3566666665544433311 000 0010 1122
Q ss_pred hcCCccccccccccc
Q psy9800 457 ILEYDAAYSKLTFAA 471 (486)
Q Consensus 457 ~~~y~~~f~~L~~~~ 471 (486)
--+|..++-.|.|..
T Consensus 1350 Lkn~asaILPLiFLa 1364 (1702)
T KOG0915|consen 1350 LKNYASAILPLIFLA 1364 (1702)
T ss_pred HHhhHHHHHHHHHHH
Confidence 246788888877766
No 62
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=52.37 E-value=66 Score=33.64 Aligned_cols=111 Identities=16% Similarity=0.195 Sum_probs=70.3
Q ss_pred ccCCcchhhHHHHHHhhccCC-------CCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCC
Q psy9800 84 FQRLSSSKTAKYSKVSHLESA-------HPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPG 156 (486)
Q Consensus 84 FRn~l~~~~llp~l~~~L~~~-------~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~ 156 (486)
-|+.-...+++|.+++++.+. +..+-.|.--.++.|+... .=.+.||+-+|+.-++.|+-...
T Consensus 202 L~tD~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~----------~l~le~Ylh~Lip~vltclv~~~ 271 (343)
T cd08050 202 LRTDPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNP----------NLHLEPYLHQLIPSVLTCLVAKQ 271 (343)
T ss_pred hccCCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCC----------CCchHHhHHHHHHHHHHHhhhHh
Confidence 344444555588888877664 3444444445555555422 33578999999999999884322
Q ss_pred --C---CccHHH-----HHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHHhcCCCCCcchhH
Q psy9800 157 --S---EENEYA-----MKCIMRSMSTLQDKVVPYLSDLLFQLTQRLAAAAKNPSKPNYNHF 208 (486)
Q Consensus 157 --~---~eNeyl-----mk~imRii~~~~e~i~p~~~~l~~~L~~il~~v~kNpsnp~f~hy 208 (486)
. .+|.+- -+.+-+++.. .......+.++++..+..+.-||.+|...||
T Consensus 272 l~~~~~~~~h~~LRd~AA~ll~~i~~~----f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~Y 329 (343)
T cd08050 272 LCSRPPDDNHWALRDYAARLLAQICRK----FSTSYNTLQPRITRTLLKALLDPKKPLTTHY 329 (343)
T ss_pred hcCCCCCchHHHHHHHHHHHHHHHHHH----cCCCCCcHHHHHHHHHHHHHcCCCCCcchhh
Confidence 1 345533 3444444444 3344556788888889999999999987765
No 63
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=51.33 E-value=1.1e+02 Score=39.70 Aligned_cols=148 Identities=13% Similarity=0.118 Sum_probs=87.2
Q ss_pred HHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHH--HHHHHHHHhhCCCCCCccHHHHHHHHHHH
Q psy9800 94 KYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAA--DLYKNLLVIFTRPGSEENEYAMKCIMRSM 171 (486)
Q Consensus 94 lp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~--~lL~~Lf~li~~~~~~eNeylmk~imRii 171 (486)
+|.++++|.+++.-++-.||+||-.+-...+ +.+..+. ..+..|+++++.++..-=+....++..++
T Consensus 490 IP~LV~LL~s~~~~iqeeAawAL~NLa~~~~-----------qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi 558 (2102)
T PLN03200 490 IPPLVQLLETGSQKAKEDSATVLWNLCCHSE-----------DIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLV 558 (2102)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCcH-----------HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998876321 1111111 23344555665532111134555555554
Q ss_pred HHhhhhhhchHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHhcCchHHHHH--HHHhhHHHHHHhccccch
Q psy9800 172 STLQDKVVPYLSDLLFQLTQRLAAAAKNPSKPNYNHFLFEAITLAIRIVCKQNPEAVATF--EQALFPIFQVIIQQDTLE 249 (486)
Q Consensus 172 ~~~~e~i~p~~~~l~~~L~~il~~v~kNpsnp~f~hylFEsi~~lir~~~~~~p~~~~~~--E~~L~P~~~~IL~~dv~E 249 (486)
.....+.. ..|.+.+ ...+|..--++.++++.++... . ..+...+- ..--+|.+..+|+.+-.+
T Consensus 559 ~~~d~~~I-------~~Lv~LL-----lsdd~~~~~~aL~vLgnIlsl~-~-~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ 624 (2102)
T PLN03200 559 RTADAATI-------SQLTALL-----LGDLPESKVHVLDVLGHVLSVA-S-LEDLVREGSAANDALRTLIQLLSSSKEE 624 (2102)
T ss_pred hccchhHH-------HHHHHHh-----cCCChhHHHHHHHHHHHHHhhc-c-hhHHHHHhhhccccHHHHHHHHcCCCHH
Confidence 43333222 3333321 1234556677888888877652 1 21111110 123568888999988888
Q ss_pred hhhhHHHHHHHHHhhCC
Q psy9800 250 FLPYTFQILSLLLEFRP 266 (486)
Q Consensus 250 F~pYvfQIls~lle~~~ 266 (486)
-.....-+++.+...++
T Consensus 625 ikk~Aa~iLsnL~a~~~ 641 (2102)
T PLN03200 625 TQEKAASVLADIFSSRQ 641 (2102)
T ss_pred HHHHHHHHHHHHhcCCh
Confidence 88888888887765544
No 64
>KOG1824|consensus
Probab=51.07 E-value=50 Score=38.98 Aligned_cols=127 Identities=16% Similarity=0.228 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHhhhhhhchHHHHHHHHHH---------HHHHHhc---CCCCCcchhHHHHHHHHHHHHHHhcCchHHH
Q psy9800 162 YAMKCIMRSMSTLQDKVVPYLSDLLFQLTQ---------RLAAAAK---NPSKPNYNHFLFEAITLAIRIVCKQNPEAVA 229 (486)
Q Consensus 162 ylmk~imRii~~~~e~i~p~~~~l~~~L~~---------il~~v~k---Npsnp~f~hylFEsi~~lir~~~~~~p~~~~ 229 (486)
-+.+|++--+.-.++.|.--+...+.+|+. ++..+-+ ||.++.-.--...+++.+.|.+-..-. .
T Consensus 174 ~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~---~ 250 (1233)
T KOG1824|consen 174 SILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFG---S 250 (1233)
T ss_pred HHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhh---c
Confidence 345555554555555555555555555543 2233333 444444456677888888887321111 1
Q ss_pred HHHHHhhHHHHHHh---ccccchhhhhHHHHHHHHHhhCCCCCCChhHHHhhhhhcCccccCCCCCccchhHHHHHhhcc
Q psy9800 230 TFEQALFPIFQVII---QQDTLEFLPYTFQILSLLLEFRPRGSISAPYLELYPFLLSPVLWSRPGNIHPLVRLLRAFITK 306 (486)
Q Consensus 230 ~~E~~L~P~~~~IL---~~dv~EF~pYvfQIls~lle~~~~~~is~~y~~L~~~Ll~p~lWe~~gnip~lvrlL~ayi~k 306 (486)
. -+.+.|.+..-. +.|=.|.-+|++|.+..+++..|. .+.| .+|.+.-++-.||++
T Consensus 251 h-~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~-ei~p-------------------~~pei~~l~l~yisY 309 (1233)
T KOG1824|consen 251 H-LDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPK-EILP-------------------HVPEIINLCLSYISY 309 (1233)
T ss_pred c-cchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChh-hhcc-------------------cchHHHHHHHHHhcc
Confidence 1 123455555444 888889999999999999988775 3333 356667777778888
Q ss_pred cCccccc
Q psy9800 307 SEPSQFS 313 (486)
Q Consensus 307 ~~~~~~~ 313 (486)
||+..-
T Consensus 310 -DPNy~y 315 (1233)
T KOG1824|consen 310 -DPNYNY 315 (1233)
T ss_pred -CCCCCC
Confidence 886554
No 65
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=50.94 E-value=97 Score=26.66 Aligned_cols=101 Identities=13% Similarity=0.252 Sum_probs=62.6
Q ss_pred hhchHHHHHHHHHHHHHHHhcCCCCCcch-hHHHHHHHHHHHHHHhcCchHHHHHHHHhhHHHHHHhccccchhhhhHHH
Q psy9800 178 VVPYLSDLLFQLTQRLAAAAKNPSKPNYN-HFLFEAITLAIRIVCKQNPEAVATFEQALFPIFQVIIQQDTLEFLPYTFQ 256 (486)
Q Consensus 178 i~p~~~~l~~~L~~il~~v~kNpsnp~f~-hylFEsi~~lir~~~~~~p~~~~~~E~~L~P~~~~IL~~dv~EF~pYvfQ 256 (486)
+.++.-.+++++.+.+..+ .++.|... -....+++.+|+. |++ .+..+=..++=.++..|+.+ |+-..+++
T Consensus 5 L~~~~Lgil~~f~~~l~d~--~~~~~~~ek~~~l~si~~lI~~-~~~---~i~~~~pQI~a~L~sal~~~--~l~~~al~ 76 (107)
T PF08064_consen 5 LQPHILGILTRFSDVLNDL--RGKKPIPEKKRALRSIEELIKL-GGS---HISSARPQIMACLQSALEIP--ELREEALS 76 (107)
T ss_pred HHHHHHHHHHHHHHHHhcc--ccCCCHHHHHHHHHHHHHHHHH-hHH---HHHHHHHHHHHHHHHHhCCh--hhHHHHHH
Confidence 3345556666666666552 23444444 5688899999995 432 34555556777778888776 88888999
Q ss_pred HHHHHHhhCCCCCCChhHHHhhhhhcCccccC
Q psy9800 257 ILSLLLEFRPRGSISAPYLELYPFLLSPVLWS 288 (486)
Q Consensus 257 Ils~lle~~~~~~is~~y~~L~~~Ll~p~lWe 288 (486)
.-..++..-....+.+-.-+.+-.++. .|+
T Consensus 77 ~W~~fi~~L~~~~l~~ll~~~~~~l~~--~~~ 106 (107)
T PF08064_consen 77 CWNCFIKTLDEEDLGPLLDQIFAILLP--LWD 106 (107)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHH--hcc
Confidence 988888665432344444444444444 554
No 66
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=49.22 E-value=3.8e+02 Score=29.11 Aligned_cols=77 Identities=14% Similarity=0.172 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHHHHhcCchHHHHHHHHhhHHHHHHhcc-ccchhhhhHHHHHHHHHhhCCCCCCChhHHHhhhhhcCcc
Q psy9800 207 HFLFEAITLAIRIVCKQNPEAVATFEQALFPIFQVIIQQ-DTLEFLPYTFQILSLLLEFRPRGSISAPYLELYPFLLSPV 285 (486)
Q Consensus 207 hylFEsi~~lir~~~~~~p~~~~~~E~~L~P~~~~IL~~-dv~EF~pYvfQIls~lle~~~~~~is~~y~~L~~~Ll~p~ 285 (486)
|-.+-.++.++... .........+.++..+...|.. +-.+..+-+.|.|+.|+.. +.|..+
T Consensus 119 ~~a~~iLt~l~~~~---~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~-------~~~R~~-------- 180 (429)
T cd00256 119 HMSFSILAKLACFG---LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRV-------DEYRFA-------- 180 (429)
T ss_pred HHHHHHHHHHHhcC---ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCC-------chHHHH--------
Confidence 55555555554431 1111122334466666666654 3457777777888777633 234444
Q ss_pred ccCCCCCccchhHHHHH
Q psy9800 286 LWSRPGNIHPLVRLLRA 302 (486)
Q Consensus 286 lWe~~gnip~lvrlL~a 302 (486)
.|+.+ .++.++++|++
T Consensus 181 f~~~~-~v~~L~~~L~~ 196 (429)
T cd00256 181 FVLAD-GVPTLVKLLSN 196 (429)
T ss_pred HHHcc-CHHHHHHHHhh
Confidence 34443 45666665554
No 67
>KOG1949|consensus
Probab=48.91 E-value=3e+02 Score=31.99 Aligned_cols=153 Identities=16% Similarity=0.194 Sum_probs=94.0
Q ss_pred HHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCC-CCccHHHHHHHHHHHH
Q psy9800 94 KYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPG-SEENEYAMKCIMRSMS 172 (486)
Q Consensus 94 lp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~-~~eNeylmk~imRii~ 172 (486)
=|.+-+-|..+++-|++-||.-.=-+.-+++++. ++++.-..++.-...|.++++.+- ..- .--.+-+.|++.
T Consensus 176 ~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~-----~~e~mD~i~~kQf~~l~~LL~d~~p~VR-S~a~~gv~k~~s 249 (1005)
T KOG1949|consen 176 KPILWRGLKARNSEVRSNAALLFVEAFPIRDPDL-----HAEEMDSIIQKQFEELYSLLEDPYPMVR-STAILGVCKITS 249 (1005)
T ss_pred hHHHHHhhccCchhhhhhHHHHHHHhccCCCCCc-----cHHHHHHHHHHHHHHHHHHhcCCCchHH-HHHHHHHHHHHH
Confidence 5777788999999999999999888888888752 366666656666666666665421 111 124566778888
Q ss_pred HhhhhhhchHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHhcCchHHHHHHHHhhHHHHHHhccccchhhh
Q psy9800 173 TLQDKVVPYLSDLLFQLTQRLAAAAKNPSKPNYNHFLFEAITLAIRIVCKQNPEAVATFEQALFPIFQVIIQQDTLEFLP 252 (486)
Q Consensus 173 ~~~e~i~p~~~~l~~~L~~il~~v~kNpsnp~f~hylFEsi~~lir~~~~~~p~~~~~~E~~L~P~~~~IL~~dv~EF~p 252 (486)
.+=+-|-| . .+..-|..|+..++++-+-. ----+|+.+.-+ ..+|...+.||..| |-+.+-|+.++.-.-=
T Consensus 250 ~fWe~iP~-~-i~~~ll~kI~d~~a~dt~s~-VR~svf~gl~~~-----l~np~sh~~le~~L-pal~~~l~D~se~VRv 320 (1005)
T KOG1949|consen 250 KFWEMIPP-T-ILIDLLKKITDELAFDTSSD-VRCSVFKGLPMI-----LDNPLSHPLLEQLL-PALRYSLHDNSEKVRV 320 (1005)
T ss_pred HHHHHcCH-H-HHHHHHHHHHHHhhhccchh-eehhHhcCcHHH-----HcCccchhHHHHHH-HhcchhhhccchhHHH
Confidence 77666633 2 34555566777777665431 122345554333 24666666666544 6777777666554322
Q ss_pred hHHHHHHHH
Q psy9800 253 YTFQILSLL 261 (486)
Q Consensus 253 YvfQIls~l 261 (486)
=.-|++..+
T Consensus 321 A~vd~ll~i 329 (1005)
T KOG1949|consen 321 AFVDMLLKI 329 (1005)
T ss_pred HHHHHHHHH
Confidence 223555544
No 68
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=48.56 E-value=2.6e+02 Score=28.89 Aligned_cols=122 Identities=12% Similarity=0.129 Sum_probs=80.0
Q ss_pred hhhhHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHHh-cCCC-CCcchhHHHHHHH
Q psy9800 137 LAPLAADLYKNLLVIFTRPGSEENEYAMKCIMRSMSTLQDKVVPYLSDLLFQLTQRLAAAA-KNPS-KPNYNHFLFEAIT 214 (486)
Q Consensus 137 l~p~~~~lL~~Lf~li~~~~~~eNeylmk~imRii~~~~e~i~p~~~~l~~~L~~il~~v~-kNps-np~f~hylFEsi~ 214 (486)
+.|.+..+|...-+.... +-...+..++--++..+++.+.|....+++.+-+....+. +|-. .|.+....|+-+.
T Consensus 69 i~~l~~~vL~DY~~~~p~---~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~ 145 (319)
T PF08767_consen 69 IPPLLDAVLGDYQNSVPD---AREPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLR 145 (319)
T ss_dssp HHHHHHHHHHHHHHS-GG---GS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcc---ccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHH
Confidence 344444455454433222 3334677788888889999999999999999988765554 4444 4999999999999
Q ss_pred HHHHHHHhcCchHHHHHHHH----hhHHHHHHhccccchhhhhHHHHHHHHHhhC
Q psy9800 215 LAIRIVCKQNPEAVATFEQA----LFPIFQVIIQQDTLEFLPYTFQILSLLLEFR 265 (486)
Q Consensus 215 ~lir~~~~~~p~~~~~~E~~----L~P~~~~IL~~dv~EF~pYvfQIls~lle~~ 265 (486)
.+++. | ++.+.++.+. ++-.+..-++....|...-+++++.-+++.-
T Consensus 146 ~i~~~-~---f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~ 196 (319)
T PF08767_consen 146 AINEH-C---FPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNV 196 (319)
T ss_dssp HHHHH-H---THHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-h---HHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence 99998 3 2334444322 2233344556666777888888888777663
No 69
>KOG2021|consensus
Probab=47.73 E-value=1e+02 Score=35.80 Aligned_cols=93 Identities=17% Similarity=0.268 Sum_probs=64.3
Q ss_pred hHHHHHHHHHHhhCCCCCCccH--HHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHH
Q psy9800 140 LAADLYKNLLVIFTRPGSEENE--YAMKCIMRSMSTLQDKVVPYLSDLLFQLTQRLAAAAKNPSKPNYNHFLFEAITLAI 217 (486)
Q Consensus 140 ~~~~lL~~Lf~li~~~~~~eNe--ylmk~imRii~~~~e~i~p~~~~l~~~L~~il~~v~kNpsnp~f~hylFEsi~~li 217 (486)
.-.+.++.+|..+...+..||= -+--.+-|+|.++++++.|+.+.++++|-+ ..++. -+.+-++.+.
T Consensus 692 vf~~~ldvil~~ls~f~k~E~iRsavrft~hRmI~~lg~~vlPfipklie~lL~--------s~d~k---Emvdfl~fls 760 (980)
T KOG2021|consen 692 VFSNILDVILVTLSFFNKFENIRSAVRFTFHRMIPILGNKVLPFIPKLIELLLS--------STDLK---EMVDFLGFLS 760 (980)
T ss_pred HHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHhcchhhhcchHHHHHHHHh--------cCCHH---HHHHHHHHHH
Confidence 3566777888777776666663 455678899999999999999888776542 23332 4778888888
Q ss_pred HHHHhcCchHHHHHHHHhhHHHHHHh
Q psy9800 218 RIVCKQNPEAVATFEQALFPIFQVII 243 (486)
Q Consensus 218 r~~~~~~p~~~~~~E~~L~P~~~~IL 243 (486)
..+|+-+.+..+-+++.+.|.+..|.
T Consensus 761 QLihkfk~~~~~ilnqmlppll~rIf 786 (980)
T KOG2021|consen 761 QLIHKFKTDCYQILNQMLPPLLNRIF 786 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87776555555556666665554443
No 70
>PF03715 Noc2: Noc2p family; InterPro: IPR005343 This is a small family of mainly hypothetical proteins of unknown function.
Probab=47.55 E-value=3.2e+02 Score=28.10 Aligned_cols=118 Identities=19% Similarity=0.345 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHHhcCCC----CCcchhHHHHHHHHHHHHHHhcCchHHHHHHHHhhH
Q psy9800 162 YAMKCIMRSMSTLQDKVVPYLSDLLFQLTQRLAAAAKNPS----KPNYNHFLFEAITLAIRIVCKQNPEAVATFEQALFP 237 (486)
Q Consensus 162 ylmk~imRii~~~~e~i~p~~~~l~~~L~~il~~v~kNps----np~f~hylFEsi~~lir~~~~~~p~~~~~~E~~L~P 237 (486)
+..+|+.-+...=.+..-.+|-.-+.+|+-.+....++.+ ..-+|-.-.-|+-.-.+..++.+ ..-.++.+.+.|
T Consensus 32 fm~n~~~EL~~ld~~~sY~~aF~yIRQLAi~LR~a~~~~~k~~~~~VynWqfv~~l~lW~~vls~~~-~~~~~L~~LiyP 110 (299)
T PF03715_consen 32 FMKNCLVELYGLDPDVSYQHAFVYIRQLAIHLRNAMTSKKKEAYKSVYNWQFVHCLDLWSRVLSAAA-KKESQLRPLIYP 110 (299)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcchhhheeeeeHHHHHHHHHHHHHHhccc-CcchhhHhHHHH
Confidence 5666666665532233345677788888888887766665 34566666667777777654411 123567777888
Q ss_pred HHHHHhcc----ccchhhhhHHHHHHHHHhhCCCCCCChhHHHhhhhhcC
Q psy9800 238 IFQVIIQQ----DTLEFLPYTFQILSLLLEFRPRGSISAPYLELYPFLLS 283 (486)
Q Consensus 238 ~~~~IL~~----dv~EF~pYvfQIls~lle~~~~~~is~~y~~L~~~Ll~ 283 (486)
..|.++.- .-..|+|.-|+++-.|..+..+ +..|..++|.|+.
T Consensus 111 Lvqi~~g~i~L~pt~ry~Plrlh~ir~L~~L~~~---t~~fIPl~~~lle 157 (299)
T PF03715_consen 111 LVQIIIGVIKLIPTARYFPLRLHCIRSLNRLSQS---TGTFIPLAPYLLE 157 (299)
T ss_pred HHHHHHHHHhhcCccccCchHHHHHHHHHHHHHh---cCceEecHHHHHH
Confidence 87777643 3348999999999999888653 2344444555544
No 71
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=47.32 E-value=3.4e+02 Score=27.93 Aligned_cols=125 Identities=18% Similarity=0.159 Sum_probs=80.9
Q ss_pred HHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHH
Q psy9800 94 KYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEENEYAMKCIMRSMST 173 (486)
Q Consensus 94 lp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~eNeylmk~imRii~~ 173 (486)
+.-.+..|.+++.-.+.-|=.+|-++|..+- ..+.+......|+..+.+.++++++.|-....+++--+..+
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~--------~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~lt 116 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRY--------LPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALT 116 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc--------cHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhh
Confidence 4455566666666666666666777776552 26677888999999999999886653433334444433333
Q ss_pred hhhhhhchHHHHHHHHHHHHHHHhcCCCC-CcchhHHHHHHHHHHHHHHhcCchHHH
Q psy9800 174 LQDKVVPYLSDLLFQLTQRLAAAAKNPSK-PNYNHFLFEAITLAIRIVCKQNPEAVA 229 (486)
Q Consensus 174 ~~e~i~p~~~~l~~~L~~il~~v~kNpsn-p~f~hylFEsi~~lir~~~~~~p~~~~ 229 (486)
++ ...-...+...+...|..+.++++. +..---+.+|+|++.-++| .+++.+.
T Consensus 117 lg--~g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~-~d~~~~~ 170 (309)
T PF05004_consen 117 LG--AGEDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGG-SDEEETE 170 (309)
T ss_pred cC--CCccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhc-CChhHHH
Confidence 32 1133556777777788888887764 4544678889998888744 4544443
No 72
>KOG0166|consensus
Probab=46.46 E-value=4.6e+02 Score=29.22 Aligned_cols=45 Identities=13% Similarity=0.073 Sum_probs=32.9
Q ss_pred hhHhhccCCcchhhH-----HHHHHhhcc-CCCCcHHHHHHHHHHHHHcccC
Q psy9800 79 IFVLLFQRLSSSKTA-----KYSKVSHLE-SAHPVVHSYASHAIDRVLVMRS 124 (486)
Q Consensus 79 Ky~~~FRn~l~~~~l-----lp~l~~~L~-~~~~vV~tyAA~aIerlL~~k~ 124 (486)
|-+-..|| -|.++. +|.++.+|. +.+.-++..||.|+-.|-+-..
T Consensus 92 kllS~~~~-ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgts 142 (514)
T KOG0166|consen 92 KLLSKERN-PPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTS 142 (514)
T ss_pred HHHccCCC-CCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCch
Confidence 33455555 333444 999999997 5668899999999998877554
No 73
>KOG1248|consensus
Probab=44.50 E-value=6.8e+02 Score=30.65 Aligned_cols=167 Identities=10% Similarity=0.116 Sum_probs=100.6
Q ss_pred HHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHH
Q psy9800 94 KYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEENEYAMKCIMRSMST 173 (486)
Q Consensus 94 lp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~eNeylmk~imRii~~ 173 (486)
.|.+...|.-.. =.|+--+.++.+++..-.+. .++-=.++.+..++...|..+|+.-+.+-...+ |..++.-+++..
T Consensus 520 a~~l~~al~~~~-elr~~Ic~sL~~Lv~~n~~~-~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~-~~l~~~~~~L~~ 596 (1176)
T KOG1248|consen 520 APILGAALLKRP-ELRETICNSLRMLVEQNKPS-SDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGR-KILASRSTVLEI 596 (1176)
T ss_pred HHHHHHHHhcch-HhHHHHHHHHHHHHHcCCCc-chHHHHHHHHhhhhhHHHHHHHHHhcCCCcccc-ccHHHHHHHHHH
Confidence 566666555433 67888888899888863111 111123777888999999999999987655666 999999999988
Q ss_pred hh-hhhhchHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHH----hcCc------hHHHHHHH--------H
Q psy9800 174 LQ-DKVVPYLSDLLFQLTQRLAAAAKNPSKPNYNHFLFEAITLAIRIVC----KQNP------EAVATFEQ--------A 234 (486)
Q Consensus 174 ~~-e~i~p~~~~l~~~L~~il~~v~kNpsnp~f~hylFEsi~~lir~~~----~~~p------~~~~~~E~--------~ 234 (486)
.+ +.+.--..+++..|-+.+.+.+..+.. .--.|+.++.+-..++ .+.. +..+.+|+ -
T Consensus 597 i~~~~~~~t~~dv~~~l~~s~~e~as~~~~---s~~~~~~~slLdl~~~~a~~~~e~~vs~l~~v~~~~e~~~~~~vQkK 673 (1176)
T KOG1248|consen 597 IRVDYFTVTPTDVVGSLKDSAGELASDLDE---SVASFKTLSLLDLLIALAPVQTESQVSKLFTVDPEFENSSSTKVQKK 673 (1176)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhHhccchh---hhhhHHHHHHHHHHHhhhccccchhHHHHHHhhHHhhccccHHHHHH
Confidence 88 444444567777777777777665531 2234555555444422 1111 11222222 2
Q ss_pred hhHHHHHHhcc-----ccchhhhhHHHHHHHHHhhCC
Q psy9800 235 LFPIFQVIIQQ-----DTLEFLPYTFQILSLLLEFRP 266 (486)
Q Consensus 235 L~P~~~~IL~~-----dv~EF~pYvfQIls~lle~~~ 266 (486)
.+-++...++- =+...+.++|+.|..-.+..+
T Consensus 674 ~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~ 710 (1176)
T KOG1248|consen 674 AYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSS 710 (1176)
T ss_pred HHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccc
Confidence 44455555554 344567777776655544433
No 74
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=43.85 E-value=2.9e+02 Score=26.20 Aligned_cols=110 Identities=19% Similarity=0.188 Sum_probs=58.0
Q ss_pred HHHHHHHHHhhcccccccccccccccccHHHHHHHhhccccCCCCCCCCCccccchhhh---hhHhhccCCcc-hhhH-H
Q psy9800 20 TAIYLVTSLASQGSTVKHGTTKSSTLVNLEDFAQQHIFPELNKPDELCPNELLSPHLKQ---IFVLLFQRLSS-SKTA-K 94 (486)
Q Consensus 20 ~Ai~Lv~sla~~~~t~~~Gvt~~n~lv~v~~ff~~~V~PeL~~~~~~~~~~~~~piLka---Ky~~~FRn~l~-~~~l-l 94 (486)
.|+.++..++.... +..-...+.+...++.-+.++. .+++. .-+...=...+ ...+ +
T Consensus 72 ~A~~~l~~l~~~l~---------~~~~~~~~~~l~~Ll~~~~~~~---------~~i~~~a~~~L~~i~~~~~~~~~~~~ 133 (228)
T PF12348_consen 72 TACQLLSDLARQLG---------SHFEPYADILLPPLLKKLGDSK---------KFIREAANNALDAIIESCSYSPKILL 133 (228)
T ss_dssp HHHHHHHHHHHHHG---------GGGHHHHHHHHHHHHHGGG------------HHHHHHHHHHHHHHHTTS-H--HHHH
T ss_pred HHHHHHHHHHHHHh---------HhHHHHHHHHHHHHHHHHcccc---------HHHHHHHHHHHHHHHHHCCcHHHHHH
Confidence 56777777776653 1111233444444444444332 44544 33333322334 3445 8
Q ss_pred HHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhh--hHHHHHHHHHHhhCC
Q psy9800 95 YSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAP--LAADLYKNLLVIFTR 154 (486)
Q Consensus 95 p~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p--~~~~lL~~Lf~li~~ 154 (486)
+.+...+.+++..|+.+++.++..++..-... ...+.. .++.+...+-+++.-
T Consensus 134 ~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~-------~~~l~~~~~~~~l~~~l~~~l~D 188 (228)
T PF12348_consen 134 EILSQGLKSKNPQVREECAEWLAIILEKWGSD-------SSVLQKSAFLKQLVKALVKLLSD 188 (228)
T ss_dssp HHHHHHTT-S-HHHHHHHHHHHHHHHTT------------GGG--HHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHccch-------HhhhcccchHHHHHHHHHHHCCC
Confidence 88888999999999999999999998865411 233332 236666666666654
No 75
>PRK09687 putative lyase; Provisional
Probab=42.87 E-value=2.8e+02 Score=28.00 Aligned_cols=64 Identities=14% Similarity=0.207 Sum_probs=39.6
Q ss_pred hhHHHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCccHHHHHHHHHH
Q psy9800 91 KTAKYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEENEYAMKCIMRS 170 (486)
Q Consensus 91 ~~llp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~eNeylmk~imRi 170 (486)
+..++.|...|.|++.-|+.+|+.++-++ +.. .+.....|.+++. -+|+.+=+...+-
T Consensus 158 ~~ai~~L~~~L~d~~~~VR~~A~~aLg~~---~~~---------------~~~~~~~L~~~L~----D~~~~VR~~A~~a 215 (280)
T PRK09687 158 EAAIPLLINLLKDPNGDVRNWAAFALNSN---KYD---------------NPDIREAFVAMLQ----DKNEEIRIEAIIG 215 (280)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHhcC---CCC---------------CHHHHHHHHHHhc----CCChHHHHHHHHH
Confidence 44577778888887777888888887766 211 1123333444443 4677777777777
Q ss_pred HHHhhh
Q psy9800 171 MSTLQD 176 (486)
Q Consensus 171 i~~~~e 176 (486)
+...++
T Consensus 216 Lg~~~~ 221 (280)
T PRK09687 216 LALRKD 221 (280)
T ss_pred HHccCC
Confidence 765544
No 76
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=40.23 E-value=1.8e+02 Score=29.52 Aligned_cols=142 Identities=15% Similarity=0.212 Sum_probs=68.0
Q ss_pred HHHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCC-Ccc---HHHHHHHH
Q psy9800 93 AKYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGS-EEN---EYAMKCIM 168 (486)
Q Consensus 93 llp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~-~eN---eylmk~im 168 (486)
.+..+.++|.+++..+.--|+..+-+++...... . .. .....+..+|+.+....+ .++ +..+.|++
T Consensus 106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~-~-----~~----~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~ 175 (312)
T PF03224_consen 106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKR-S-----EK----LVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQ 175 (312)
T ss_dssp -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--------HH----HHHHHHHHHHHHHH-TT-HHHH---HHHHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCcc-c-----cc----hHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHH
Confidence 3455556999999999999999999999876532 1 11 115677788888765332 233 45566666
Q ss_pred HHHHHhhhhhhchH--HHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHhcCchHHHHH-HHHhhHHHHHHhcc
Q psy9800 169 RSMSTLQDKVVPYL--SDLLFQLTQRLAAAAKNPSKPNYNHFLFEAITLAIRIVCKQNPEAVATF-EQALFPIFQVIIQQ 245 (486)
Q Consensus 169 Rii~~~~e~i~p~~--~~l~~~L~~il~~v~kNpsnp~f~hylFEsi~~lir~~~~~~p~~~~~~-E~~L~P~~~~IL~~ 245 (486)
.++. .++..... ...++.|.+++...+.++++..+. -..+++-.+=- .+=+++....+ ..-++|.+..|++.
T Consensus 176 ~LL~--~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Q-l~Y~~ll~lWl--LSF~~~~~~~~~~~~~i~~L~~i~~~ 250 (312)
T PF03224_consen 176 NLLR--SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQ-LQYQALLCLWL--LSFEPEIAEELNKKYLIPLLADILKD 250 (312)
T ss_dssp HHHT--SHHHHHHHHTHHHHHHHHHHHH---------HHH-HHHHHHHHHHH--HTTSHHHHHHHHTTSHHHHHHHHHHH
T ss_pred HHhC--cchhHHHHHhcCcHHHHHHHHHhhcccCCCCchh-HHHHHHHHHHH--HhcCHHHHHHHhccchHHHHHHHHHh
Confidence 5542 12222222 445555555554433333333222 22222222211 12355555544 22266766666666
Q ss_pred ccch
Q psy9800 246 DTLE 249 (486)
Q Consensus 246 dv~E 249 (486)
..-|
T Consensus 251 ~~KE 254 (312)
T PF03224_consen 251 SIKE 254 (312)
T ss_dssp --SH
T ss_pred cccc
Confidence 6554
No 77
>KOG3682|consensus
Probab=40.01 E-value=6.5e+02 Score=29.15 Aligned_cols=34 Identities=18% Similarity=0.164 Sum_probs=25.2
Q ss_pred hhHHHHHhhcccCccccccccchhHHHHHHHHHHH
Q psy9800 296 LVRLLRAFITKSEPSQFSATLKLNNVLGVFQKLIA 330 (486)
Q Consensus 296 lvrlL~ayi~k~~~~~~~~~~~l~~ilgifqkli~ 330 (486)
-.|+|..|++. ++..+-...-++.++.+||.|-.
T Consensus 564 c~~il~~f~k~-~~~~i~D~~~~q~L~evc~tl~d 597 (930)
T KOG3682|consen 564 CSRILEIFSKT-FTHTISDISACQFLIEVCRTLCD 597 (930)
T ss_pred HHHHHHHHHhc-CCcccccHHHHHHHHHHHHHHHH
Confidence 47888888888 87666655567888888877643
No 78
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=39.57 E-value=2.3e+02 Score=32.06 Aligned_cols=65 Identities=14% Similarity=0.178 Sum_probs=45.8
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHhcCchHHHHHHHHhhHHHHHHhccccchhhhhHHHHHHHHHhhC
Q psy9800 199 NPSKPNYNHFLFEAITLAIRIVCKQNPEAVATFEQALFPIFQVIIQQDTLEFLPYTFQILSLLLEFR 265 (486)
Q Consensus 199 Npsnp~f~hylFEsi~~lir~~~~~~p~~~~~~E~~L~P~~~~IL~~dv~EF~pYvfQIls~lle~~ 265 (486)
|--+..|+-|+=--++.|+.- =+++..-..+-++++-+|..|=-.=..+|.||.=-|+.++...+
T Consensus 668 ntl~~df~~y~d~~ms~LvQ~--lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qqas 732 (858)
T COG5215 668 NTLGTDFNIYADVLMSSLVQC--LSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIMMLFQQAS 732 (858)
T ss_pred HHhhhhHHHHHHHHHHHHHHH--hcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 444566777777777777663 24555566777788888888877777789999888887766443
No 79
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=39.34 E-value=73 Score=30.73 Aligned_cols=38 Identities=13% Similarity=0.190 Sum_probs=26.9
Q ss_pred CChhHHHhhhhhcCccccCCCCCccchhHHHHHhhcccCc
Q psy9800 270 ISAPYLELYPFLLSPVLWSRPGNIHPLVRLLRAFITKSEP 309 (486)
Q Consensus 270 is~~y~~L~~~Ll~p~lWe~~gnip~lvrlL~ayi~k~~~ 309 (486)
+-..+|+++|...+-.. +...+++.+.+.|.+.+.. .+
T Consensus 147 l~~QlWslLP~FC~~P~-D~~~~F~~~a~~L~~~L~~-~~ 184 (198)
T PF08161_consen 147 LVQQLWSLLPGFCNYPT-DLAESFPSFAKLLGNALYD-QP 184 (198)
T ss_pred HHHHHHHHhHHhcCCcc-cHHHHHHHHHHHHHHHHhc-Cc
Confidence 45678999998877311 2223568999999998887 55
No 80
>PRK14752 delta-hemolysin; Provisional
Probab=38.97 E-value=63 Score=22.97 Aligned_cols=31 Identities=13% Similarity=0.259 Sum_probs=25.4
Q ss_pred HHHHHHHhhhhhhchHHHHHHHHHHHHHHHh
Q psy9800 167 IMRSMSTLQDKVVPYLSDLLFQLTQRLAAAA 197 (486)
Q Consensus 167 imRii~~~~e~i~p~~~~l~~~L~~il~~v~ 197 (486)
|.|++...+|.+...+.+++..+.+.++-+.
T Consensus 5 ilrifilikegvisma~dii~tig~~vk~ii 35 (44)
T PRK14752 5 ILRIFILIKEGVISMAQDIISTIGDLVKWII 35 (44)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999888777655443
No 81
>KOG4653|consensus
Probab=38.97 E-value=6.2e+02 Score=30.05 Aligned_cols=174 Identities=20% Similarity=0.273 Sum_probs=111.8
Q ss_pred HHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCccHHH-HHHHHHHHH
Q psy9800 94 KYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEENEYA-MKCIMRSMS 172 (486)
Q Consensus 94 lp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~eNeyl-mk~imRii~ 172 (486)
+...+..+.|+..|++.||-..+.+++..|.+ .+.+. ...++.-.+..++- |+.|+ ..||--+.+
T Consensus 729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~--------~~~~~--~ekvl~i~ld~Lkd----edsyvyLnaI~gv~~ 794 (982)
T KOG4653|consen 729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKRKK--------ATLIQ--GEKVLAIALDTLKD----EDSYVYLNAIRGVVS 794 (982)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHhcch--------hhhhh--HHHHHHHHHHHhcc----cCceeeHHHHHHHHH
Confidence 77777889999999999999999999998853 12221 12233333333332 44554 334332222
Q ss_pred HhhhhhhchHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHhcCchHHHHHHHHhhHHHHHHhccccchhhh
Q psy9800 173 TLQDKVVPYLSDLLFQLTQRLAAAAKNPSKPNYNHFLFEAITLAIRIVCKQNPEAVATFEQALFPIFQVIIQQDTLEFLP 252 (486)
Q Consensus 173 ~~~e~i~p~~~~l~~~L~~il~~v~kNpsnp~f~hylFEsi~~lir~~~~~~p~~~~~~E~~L~P~~~~IL~~dv~EF~p 252 (486)
+.|- |=..+++.|.+--.+-.+-+. |..--.+=|++.-+++- .-|.....-+.|.-.|.........+|--
T Consensus 795 -Lcev---y~e~il~dL~e~Y~s~k~k~~-~d~~lkVGEai~k~~qa----~Gel~~~y~~~Li~tfl~gvrepd~~~Ra 865 (982)
T KOG4653|consen 795 -LCEV---YPEDILPDLSEEYLSEKKKLQ-TDYRLKVGEAILKVAQA----LGELVFKYKAVLINTFLSGVREPDHEFRA 865 (982)
T ss_pred -HHHh---cchhhHHHHHHHHHhcccCCC-ccceehHHHHHHHHHHH----hccHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 2222 334555666654444333321 33444444777666654 44667777778999999999988788888
Q ss_pred hHHHHHHHHHhhCCCCCCChhHHHhhhhhcCccccCCCCCc
Q psy9800 253 YTFQILSLLLEFRPRGSISAPYLELYPFLLSPVLWSRPGNI 293 (486)
Q Consensus 253 YvfQIls~lle~~~~~~is~~y~~L~~~Ll~p~lWe~~gni 293 (486)
-.+=+++.|...... .+|+.+.+.+..+++ +=..+|.+
T Consensus 866 SS~a~lg~Lcq~~a~-~vsd~~~ev~~~Il~--l~~~d~s~ 903 (982)
T KOG4653|consen 866 SSLANLGQLCQLLAF-QVSDFFHEVLQLILS--LETTDGSV 903 (982)
T ss_pred hHHHHHHHHHHHHhh-hhhHHHHHHHHHHHH--HHccCCch
Confidence 899999999877664 789999999999888 33334543
No 82
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=38.07 E-value=4e+02 Score=26.20 Aligned_cols=143 Identities=20% Similarity=0.275 Sum_probs=81.1
Q ss_pred HHHHHhhccCCCCcHHHHHHHHHHHHHcccCCC--------------------CCCcccccchhhhhHHHHHHHHHHhhC
Q psy9800 94 KYSKVSHLESAHPVVHSYASHAIDRVLVMRSPN--------------------GQGTLVTADVLAPLAADLYKNLLVIFT 153 (486)
Q Consensus 94 lp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~--------------------~~~~~~~~~~l~p~~~~lL~~Lf~li~ 153 (486)
-..+.+.+.+.+.-|++.|..-+|+++.....+ .+-|+++...++.-+..+|+.|++.+.
T Consensus 45 K~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~~~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~l~ 124 (239)
T PF11935_consen 45 KDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSDSPPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDVLQ 124 (239)
T ss_dssp HHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TTS---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCCCccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 445556677776679999999999998776331 133566666777777777777777776
Q ss_pred CCCCCccHHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHH-----HhcCchHH
Q psy9800 154 RPGSEENEYAMKCIMRSMSTLQDKVVPYLSDLLFQLTQRLAAAAKNPSKPNYNHFLFEAITLAIRIV-----CKQNPEAV 228 (486)
Q Consensus 154 ~~~~~eNeylmk~imRii~~~~e~i~p~~~~l~~~L~~il~~v~kNpsnp~f~hylFEsi~~lir~~-----~~~~p~~~ 228 (486)
.+. .. .+....+++.|+.+.+ ..|.|....+.++..+--.. -....-..
T Consensus 125 ~~~-i~-------------------~~~~~a~insL~~Iak------~RP~~~~~Il~~ll~~~~~~~~~~~~~~~~~~v 178 (239)
T PF11935_consen 125 SPH-IS-------------------SPLLTAIINSLSNIAK------QRPQFMSRILPALLSFNPNLSPMQPPTLSKLQV 178 (239)
T ss_dssp -TT----------------------HHHHHHHHHHHHHHHH------HSGGGHHHHHHHHHHHHHS------TTCSHHHH
T ss_pred hcc-cc-------------------hHHHHHHHHHHHHHHH------HhhHHHHHHHHHHHhcCccccccCCccchHHHH
Confidence 522 11 1222333333333332 14555544444443333321 00122345
Q ss_pred HHHHHHhhHHHHHHhccccchhhhhHHHHHHHHHhh
Q psy9800 229 ATFEQALFPIFQVIIQQDTLEFLPYTFQILSLLLEF 264 (486)
Q Consensus 229 ~~~E~~L~P~~~~IL~~dv~EF~pYvfQIls~lle~ 264 (486)
..+|..+==.+.++|...... ||.=+|-..|.+.
T Consensus 179 ~sv~k~lk~~l~~llk~~~~~--~~~~~i~~~L~~l 212 (239)
T PF11935_consen 179 KSVEKTLKIFLLHLLKHPASS--PFQGRITQALTDL 212 (239)
T ss_dssp HHHHHHHHHHHHHHHTSGGGG--GGHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHCCCCch--hhHHHHHHHHHHH
Confidence 667777777888888887664 6666877776644
No 83
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=37.99 E-value=5.8e+02 Score=28.01 Aligned_cols=32 Identities=13% Similarity=0.017 Sum_probs=29.1
Q ss_pred HHHHHHhhccCCCCcHHHHHHHHHHHHHcccC
Q psy9800 93 AKYSKVSHLESAHPVVHSYASHAIDRVLVMRS 124 (486)
Q Consensus 93 llp~l~~~L~~~~~vV~tyAA~aIerlL~~k~ 124 (486)
+++.++.+|.+++.-|-..|+.++.++...+.
T Consensus 120 l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~ 151 (503)
T PF10508_consen 120 LLPLIIQCLRDPDLSVAKAAIKALKKLASHPE 151 (503)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHhCCch
Confidence 39999999999999999999999999987653
No 84
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=37.14 E-value=3.8e+02 Score=27.03 Aligned_cols=97 Identities=14% Similarity=0.248 Sum_probs=68.0
Q ss_pred hHHHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCccHHHHHHHHHHH
Q psy9800 92 TAKYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEENEYAMKCIMRSM 171 (486)
Q Consensus 92 ~llp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~eNeylmk~imRii 171 (486)
.++..+.+.|.+.+.-+++-||.++-||+....-. . -+.+|..|+-+-=.|.+.+|.++-.|+---+
T Consensus 114 ~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~-------~------~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ff 180 (298)
T PF12719_consen 114 SLLKILTKFLDSENPELQAIAVEGLCKLLLSGRIS-------D------PPKVLSRLLLLYFNPSTEDNQRLRQCLSVFF 180 (298)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCC-------c------HHHHHHHHHHHHcCcccCCcHHHHHHHHHHH
Confidence 44888999999988889999999999999865421 1 4566677766665677788998888887766
Q ss_pred HHhhhhhhchHHHHHHHHHHHHHHHhcCCC
Q psy9800 172 STLQDKVVPYLSDLLFQLTQRLAAAAKNPS 201 (486)
Q Consensus 172 ~~~~e~i~p~~~~l~~~L~~il~~v~kNps 201 (486)
-.+...-...-..+..-....+..+++.|.
T Consensus 181 p~y~~s~~~~Q~~l~~~f~~~l~~~~~~~~ 210 (298)
T PF12719_consen 181 PVYASSSPENQERLAEAFLPTLRTLSNAPD 210 (298)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHhCcc
Confidence 666554433333444455556666666655
No 85
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=36.80 E-value=43 Score=22.44 Aligned_cols=27 Identities=22% Similarity=0.102 Sum_probs=24.1
Q ss_pred HHHHHhhccCCCCcHHHHHHHHHHHHH
Q psy9800 94 KYSKVSHLESAHPVVHSYASHAIDRVL 120 (486)
Q Consensus 94 lp~l~~~L~~~~~vV~tyAA~aIerlL 120 (486)
+|.++++|.+++.-+..+|+.||..|.
T Consensus 14 i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 14 LPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 899999999999999999999998763
No 86
>KOG2256|consensus
Probab=36.67 E-value=7e+02 Score=28.57 Aligned_cols=173 Identities=14% Similarity=0.203 Sum_probs=99.0
Q ss_pred hhHhhccCCcchhhHHHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCC--CC
Q psy9800 79 IFVLLFQRLSSSKTAKYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTR--PG 156 (486)
Q Consensus 79 Ky~~~FRn~l~~~~llp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~--~~ 156 (486)
-|+.+||..+ ..++..+++.=...+.-++.-|=.|+-++..... .+-+-|.++...-..++--+. ++
T Consensus 271 ~~~~~f~k~l--k~liK~~V~vWstge~~~rv~Afl~l~~l~~~~~---------~~~l~~vlk~mY~afv~nsk~~~~~ 339 (661)
T KOG2256|consen 271 PFLATFPKLL--KKLIKAVVHVWSTGEESLRVLAFLCLIDLCRKFK---------STCLDPVLKTMYLAFVRNSKFVTVN 339 (661)
T ss_pred HHHhhHHHHH--HHHHHHHheeeccCCcchhhHHHHHHHHHHHHhh---------hHHHHHHHHHHHHHHHHhCCCCCCc
Confidence 4446666533 2346666666667788888888888887776543 444555555555544443322 11
Q ss_pred C-CccHHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHHhc--CCCC--CcchhHHHHHHHHHHHHHH-hcCchHHHH
Q psy9800 157 S-EENEYAMKCIMRSMSTLQDKVVPYLSDLLFQLTQRLAAAAK--NPSK--PNYNHFLFEAITLAIRIVC-KQNPEAVAT 230 (486)
Q Consensus 157 ~-~eNeylmk~imRii~~~~e~i~p~~~~l~~~L~~il~~v~k--Npsn--p~f~hylFEsi~~lir~~~-~~~p~~~~~ 230 (486)
+ .--.|+..+..-.+..=-+.--.++-..+.+|+-.+...-. |.+. +-||---.-|+-.-.|..+ +..+ -.+
T Consensus 340 tl~~i~Fl~~slvEL~~ld~~~~Yq~aF~yIrQLAihLRnam~~k~K~s~~~VYnWqfi~cL~lW~rvisf~~~~--~s~ 417 (661)
T KOG2256|consen 340 TLPLINFLQNSLVELLGLDLQVSYQHAFVYIRQLAIHLRNAMITKNKESVQSVYNWQYVHCLDLWLRVISFANGS--ASQ 417 (661)
T ss_pred ccchhHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--Hhh
Confidence 1 23347888877655533333334567788888888776643 3322 3333222233333344433 3333 266
Q ss_pred HHHHhhHHHHHHhccccc------hhhhhHHHHHHHHHhhCC
Q psy9800 231 FEQALFPIFQVIIQQDTL------EFLPYTFQILSLLLEFRP 266 (486)
Q Consensus 231 ~E~~L~P~~~~IL~~dv~------EF~pYvfQIls~lle~~~ 266 (486)
+-+.+.|..|.|+ +|. -|+|+=|-++-.|..+..
T Consensus 418 lq~LvYpLvQvi~--GvirLipT~qy~PLRlhcir~Li~Ls~ 457 (661)
T KOG2256|consen 418 LQPLVYPLVQVIL--GVIRLIPTPQYYPLRLHCIRSLISLSR 457 (661)
T ss_pred hhhhhhHHHHHHH--HHhhhcCcccchhHHHHHHHHHHHHHh
Confidence 7777888888777 343 588877777766666654
No 87
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=36.57 E-value=5.2e+02 Score=26.99 Aligned_cols=83 Identities=19% Similarity=0.359 Sum_probs=44.2
Q ss_pred cHHHHHHHHHHHHHhhh----hhhchHHHHHHHHHHHHH--HHhcCCCCCcchhHHHHHHHH-HHHHHHhcCchHHHHHH
Q psy9800 160 NEYAMKCIMRSMSTLQD----KVVPYLSDLLFQLTQRLA--AAAKNPSKPNYNHFLFEAITL-AIRIVCKQNPEAVATFE 232 (486)
Q Consensus 160 Neylmk~imRii~~~~e----~i~p~~~~l~~~L~~il~--~v~kNpsnp~f~hylFEsi~~-lir~~~~~~p~~~~~~E 232 (486)
|-.++..+||++.-+-+ .+-||.-.++.-+..++. +++.+| +.-+|+.+.-.|+ ++..+|..-....+.+-
T Consensus 230 nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~--~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~ 307 (343)
T cd08050 230 NLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRP--PDDNHWALRDYAARLLAQICRKFSTSYNTLQ 307 (343)
T ss_pred cHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCC--CCchHHHHHHHHHHHHHHHHHHcCCCCCcHH
Confidence 66677777777664433 367888888887777753 334443 1346666655442 22333433323334444
Q ss_pred HHhhHHHHHHhc
Q psy9800 233 QALFPIFQVIIQ 244 (486)
Q Consensus 233 ~~L~P~~~~IL~ 244 (486)
..++-.+..+|.
T Consensus 308 ~ri~~tl~k~l~ 319 (343)
T cd08050 308 PRITRTLLKALL 319 (343)
T ss_pred HHHHHHHHHHHc
Confidence 444444444443
No 88
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=35.55 E-value=29 Score=27.53 Aligned_cols=45 Identities=18% Similarity=0.245 Sum_probs=33.9
Q ss_pred chhhhhhHhhccCCcchhhHHHHHHhhccCCCCcHHHHHHHHHHHH
Q psy9800 74 PHLKQIFVLLFQRLSSSKTAKYSKVSHLESAHPVVHSYASHAIDRV 119 (486)
Q Consensus 74 piLkaKy~~~FRn~l~~~~llp~l~~~L~~~~~vV~tyAA~aIerl 119 (486)
|.+|..-+..+. ++..+..+|.+.+.+.|++..|+..|+.++.++
T Consensus 14 ~~vr~~a~~~L~-~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i 58 (88)
T PF13646_consen 14 PQVRAEAARALG-ELGDPEAIPALIELLKDEDPMVRRAAARALGRI 58 (88)
T ss_dssp HHHHHHHHHHHH-CCTHHHHHHHHHHHHTSSSHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHH-HcCCHhHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 677772222222 344557799999999999999999999999965
No 89
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=35.46 E-value=4.1e+02 Score=25.48 Aligned_cols=72 Identities=18% Similarity=0.253 Sum_probs=40.0
Q ss_pred hhhhhHHHHHHHHHHhhCCCCCCccH---HHHHHHHHHHHH-hhhhhhchHHHHHHHHHHHHHHHhcCCCCCcchhHHHH
Q psy9800 136 VLAPLAADLYKNLLVIFTRPGSEENE---YAMKCIMRSMST-LQDKVVPYLSDLLFQLTQRLAAAAKNPSKPNYNHFLFE 211 (486)
Q Consensus 136 ~l~p~~~~lL~~Lf~li~~~~~~eNe---ylmk~imRii~~-~~e~i~p~~~~l~~~L~~il~~v~kNpsnp~f~hylFE 211 (486)
|..++++-..+.| ++ +|-. ...+.+..++.. .++.+.|...+++.-|-..+ |-.||.--.-+.+
T Consensus 35 dy~~~Lpif~dGL----~E---t~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL-----~tr~~~V~~~~L~ 102 (183)
T PF10274_consen 35 DYHHYLPIFFDGL----RE---TEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRAL-----NTRDPEVFCATLK 102 (183)
T ss_pred chhhHHHHHHhhh----hc---cCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH-----hCCCHHHHHHHHH
Confidence 3456666665555 55 4445 445555566665 66777776666555544333 2244544455566
Q ss_pred HHHHHHHH
Q psy9800 212 AITLAIRI 219 (486)
Q Consensus 212 si~~lir~ 219 (486)
++..|++.
T Consensus 103 ~Lq~Lv~~ 110 (183)
T PF10274_consen 103 ALQQLVTS 110 (183)
T ss_pred HHHHHHHh
Confidence 66665554
No 90
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=34.50 E-value=5.9e+02 Score=27.05 Aligned_cols=155 Identities=22% Similarity=0.255 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhh--------hhhhc
Q psy9800 109 HSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEENEYAMKCIMRSMSTLQ--------DKVVP 180 (486)
Q Consensus 109 ~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~eNeylmk~imRii~~~~--------e~i~p 180 (486)
.......|-|-|.+|.. |...++++.|++++..++. ....-|+.--++.-.. ..+.+
T Consensus 250 ~~~~~~Wi~KaLv~R~~-------------~~~~~~~~~L~~lL~~~~~--g~~aA~~f~il~~d~~~~l~~~~~a~vkl 314 (415)
T PF12460_consen 250 ALEILIWITKALVMRGH-------------PLATELLDKLLELLSSPEL--GQQAAKAFGILLSDSDDVLNKENHANVKL 314 (415)
T ss_pred HHHHHHHHHHHHHHcCC-------------chHHHHHHHHHHHhCChhh--HHHHHHHHhhHhcCcHHhcCccccchhhh
Confidence 33344445566666642 6677788888888865211 1122222221111100 01111
Q ss_pred hH-HHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHhcCchHHHHHHHHhhHHHHHHhccccchhhhhHHHHHH
Q psy9800 181 YL-SDLLFQLTQRLAAAAKNPSKPNYNHFLFEAITLAIRIVCKQNPEAVATFEQALFPIFQVIIQQDTLEFLPYTFQILS 259 (486)
Q Consensus 181 ~~-~~l~~~L~~il~~v~kNpsnp~f~hylFEsi~~lir~~~~~~p~~~~~~E~~L~P~~~~IL~~dv~EF~pYvfQIls 259 (486)
.. .-+-+.+...+.+-.++.++..- +-...+++.+++.+ ..+++..-=+.|+|.+..-|.-+-.+..--++++|.
T Consensus 315 LykQR~F~~~~p~L~~~~~~~~~~~k-~~yL~ALs~ll~~v---P~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~ 390 (415)
T PF12460_consen 315 LYKQRFFTQVLPKLLEGFKEADDEIK-SNYLTALSHLLKNV---PKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLK 390 (415)
T ss_pred HHhHHHHHHHHHHHHHHHhhcChhhH-HHHHHHHHHHHhhC---CHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 11 12333333333344444443322 33466999999973 233333333558999999998877788888999999
Q ss_pred HHHhhCCCCCCChhHHHhhhhhcC
Q psy9800 260 LLLEFRPRGSISAPYLELYPFLLS 283 (486)
Q Consensus 260 ~lle~~~~~~is~~y~~L~~~Ll~ 283 (486)
.+++-.+. -+.+....|.|.|+.
T Consensus 391 ~~l~~~~~-~i~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 391 MILEEAPE-LISEHLSSLIPRLLK 413 (415)
T ss_pred HHHHcCHH-HHHHHHHHHHHHHHh
Confidence 98877764 577777778777765
No 91
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=34.38 E-value=1.2e+02 Score=25.78 Aligned_cols=56 Identities=14% Similarity=0.318 Sum_probs=41.1
Q ss_pred chhhhhHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhhhhhhchHHHHHHHHH
Q psy9800 135 DVLAPLAADLYKNLLVIFTRPGSEENEYAMKCIMRSMSTLQDKVVPYLSDLLFQLT 190 (486)
Q Consensus 135 ~~l~p~~~~lL~~Lf~li~~~~~~eNeylmk~imRii~~~~e~i~p~~~~l~~~L~ 190 (486)
.++.++++.|+..++++++-++..==.|.-.++.-+.-..++++.|+..++...|.
T Consensus 19 ~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~ 74 (97)
T PF12755_consen 19 KDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALC 74 (97)
T ss_pred HhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34889999999999999976332222377788888888888888877766666544
No 92
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=32.86 E-value=2.5e+02 Score=33.20 Aligned_cols=181 Identities=15% Similarity=0.199 Sum_probs=96.9
Q ss_pred hhhHHHHHHhhccC-CCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCccHHHHHHHH
Q psy9800 90 SKTAKYSKVSHLES-AHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEENEYAMKCIM 168 (486)
Q Consensus 90 ~~~llp~l~~~L~~-~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~eNeylmk~im 168 (486)
+++++-++..++.+ ++.--+.|---+|-|++.+. ++-++|...++++.|+++.... +.|.+.-+ ++
T Consensus 531 lenl~~lvl~~~as~~~~~e~~~ll~~i~rii~~~----------~~~i~pl~~~il~~L~~lv~~~--~knps~p~-~~ 597 (947)
T COG5657 531 LENLILLVLSLMASPSSLEEREFLLQLISRIIIID----------PELIAPLGSEILQLLDNLVEIN--AKNPSNPQ-FA 597 (947)
T ss_pred HHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhC----------HHhhhhhHHHHHHHHHHHHHHH--ccCCccHH-HH
Confidence 45557777888888 56778899999999999865 4556676666666666666432 12222222 12
Q ss_pred HHHHHhhhhhhchHHHHHHHHHHHHHHHhcCCCCCcc----hhHHHHHHHHHHHHHHhcCchHHHHHHHHhhHHHHHHhc
Q psy9800 169 RSMSTLQDKVVPYLSDLLFQLTQRLAAAAKNPSKPNY----NHFLFEAITLAIRIVCKQNPEAVATFEQALFPIFQVIIQ 244 (486)
Q Consensus 169 Rii~~~~e~i~p~~~~l~~~L~~il~~v~kNpsnp~f----~hylFEsi~~lir~~~~~~p~~~~~~E~~L~P~~~~IL~ 244 (486)
..+.++|.-.+ ...+..-.+....+-|+-+|.| +--.+|-.|.+..+ .+..|+ ++-+-.+|.+-.+++
T Consensus 598 ---h~~fe~I~al~-~~~~~~~~~~ip~l~~~l~p~~~~l~~ed~~El~~~~lq~-~s~l~e---~f~~~~lp~v~~~l~ 669 (947)
T COG5657 598 ---HYTFEDIGALV-FLKSGMCEITIPTLVLALVPEFPVLLSEDATELWSYVLQL-LSILPE---HFSGDVLPSVVKILR 669 (947)
T ss_pred ---HHHHHHHHHHH-HhhhcccccchHHHHHhhCccchhhhhhhHHHHHHHHHHH-Hhhcch---hhcCCcCchHHHHHh
Confidence 22233332111 1111111122233334444543 33445666766666 455554 333445677777777
Q ss_pred ccc--chhhhhHHHHHHHHHhhCC----CCCCChh-----HHHhhhhhcCccccCCCC
Q psy9800 245 QDT--LEFLPYTFQILSLLLEFRP----RGSISAP-----YLELYPFLLSPVLWSRPG 291 (486)
Q Consensus 245 ~dv--~EF~pYvfQIls~lle~~~----~~~is~~-----y~~L~~~Ll~p~lWe~~g 291 (486)
+-. .|..|-...|++....... .+.++.. -..++..++.-..|+.-|
T Consensus 670 q~~~~t~ll~~~~~I~~~~~Ll~~~~~~~~~if~~s~~~~vL~i~~~ll~~e~~~~~~ 727 (947)
T COG5657 670 QPSLATELLPTKLEILKSYRLLDNPILTTGYIFKSSGFQPVLGILQYLLGSEPHDALC 727 (947)
T ss_pred cccCchHHHHHHHHHHHHHHHHHhhhhcccccccccchhhhHHHHHHHHhcchHHHHH
Confidence 632 3677777788876544432 1123332 233455555656666544
No 93
>KOG1020|consensus
Probab=32.86 E-value=1.1e+03 Score=29.85 Aligned_cols=99 Identities=21% Similarity=0.235 Sum_probs=64.9
Q ss_pred chhHHHHHHHHHHHHHHhcCchHHH-HHHHHhhHHHHHH-hccccchhhhhHHHHHHHHHhhCCCCCCChhHHH-hhhhh
Q psy9800 205 YNHFLFEAITLAIRIVCKQNPEAVA-TFEQALFPIFQVI-IQQDTLEFLPYTFQILSLLLEFRPRGSISAPYLE-LYPFL 281 (486)
Q Consensus 205 f~hylFEsi~~lir~~~~~~p~~~~-~~E~~L~P~~~~I-L~~dv~EF~pYvfQIls~lle~~~~~~is~~y~~-L~~~L 281 (486)
-+-.+.+++++|-.+ |...|..+. ..--.|-|.+..= =.+.-..|+-||.+|+-..+.+-+. +|+.+.. |=+.|
T Consensus 1050 ~~~~~~~~lstL~~F-skirP~Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~--~sesfL~sLEe~L 1126 (1692)
T KOG1020|consen 1050 SEVRLLAYLSTLFVF-SKIRPQLLTKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVAN--PSESFLASLEEDL 1126 (1692)
T ss_pred chhHHHHHHHHHHHH-HhcCchhccHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhcc--chHHHHHHHHHHH
Confidence 356788999999988 788888877 6667788876543 2234457999999999999998875 7776532 22233
Q ss_pred cCccccCCCCCccchhHHHHHhhcc
Q psy9800 282 LSPVLWSRPGNIHPLVRLLRAFITK 306 (486)
Q Consensus 282 l~p~lWe~~gnip~lvrlL~ayi~k 306 (486)
+.--.....+-+...|.+|.+-..|
T Consensus 1127 ~~~i~k~g~a~V~~~vsCl~sl~~k 1151 (1692)
T KOG1020|consen 1127 LKRIVKMGMATVVEAVSCLGSLATK 1151 (1692)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHhh
Confidence 3311111112355566777776664
No 94
>KOG1062|consensus
Probab=32.14 E-value=1.9e+02 Score=33.79 Aligned_cols=153 Identities=22% Similarity=0.276 Sum_probs=91.2
Q ss_pred HHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCccHHHHH----HHHH
Q psy9800 94 KYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEENEYAMK----CIMR 169 (486)
Q Consensus 94 lp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~eNeylmk----~imR 169 (486)
...+.+-|.+++..|-.-|-.|+-++..-. ...|+.|-+..|+ +. .++|+-| |..|
T Consensus 109 tNslknDL~s~nq~vVglAL~alg~i~s~E---------mardlapeVe~Ll-------~~----~~~~irKKA~Lca~r 168 (866)
T KOG1062|consen 109 TNSLKNDLNSSNQYVVGLALCALGNICSPE---------MARDLAPEVERLL-------QH----RDPYIRKKAALCAVR 168 (866)
T ss_pred HHHHHhhccCCCeeehHHHHHHhhccCCHH---------HhHHhhHHHHHHH-------hC----CCHHHHHHHHHHHHH
Confidence 677777899999999989988888765522 1344455444444 32 4566654 5555
Q ss_pred HHHHhhhhhhchHHHHHHHHHHHHHHH-hcCCCCCcchhHHHH-HHHHHHHHHHhcCchHHHHHHHHhhHHHHHHhcccc
Q psy9800 170 SMSTLQDKVVPYLSDLLFQLTQRLAAA-AKNPSKPNYNHFLFE-AITLAIRIVCKQNPEAVATFEQALFPIFQVIIQQDT 247 (486)
Q Consensus 170 ii~~~~e~i~p~~~~l~~~L~~il~~v-~kNpsnp~f~hylFE-si~~lir~~~~~~p~~~~~~E~~L~P~~~~IL~~dv 247 (486)
++.. .+++.+++....... +++ +|.+.- ++..+.+. |+.+|+.+..|.+ +.|-|-.||.+=+
T Consensus 169 ~irK--------~P~l~e~f~~~~~~lL~ek------~hGVL~~~l~l~~e~-c~~~~~~l~~fr~-l~~~lV~iLk~l~ 232 (866)
T KOG1062|consen 169 FIRK--------VPDLVEHFVIAFRKLLCEK------HHGVLIAGLHLITEL-CKISPDALSYFRD-LVPSLVKILKQLT 232 (866)
T ss_pred HHHc--------CchHHHHhhHHHHHHHhhc------CCceeeeHHHHHHHH-HhcCHHHHHHHHH-HHHHHHHHHHHHh
Confidence 5543 234445554433333 332 255544 44555555 9999999999998 8899999996533
Q ss_pred c----------hhhhhHHHHHH-----HHHhhCCCCCCChhHHHhhhhhcCc
Q psy9800 248 L----------EFLPYTFQILS-----LLLEFRPRGSISAPYLELYPFLLSP 284 (486)
Q Consensus 248 ~----------EF~pYvfQIls-----~lle~~~~~~is~~y~~L~~~Ll~p 284 (486)
. -.-.=.+||-. .|-...+ ..|+.|.-++..+.+-
T Consensus 233 ~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~--daSd~M~DiLaqvatn 282 (866)
T KOG1062|consen 233 NSGYSPEYDVHGISDPFLQIRILRLLRILGQNDA--DASDLMNDILAQVATN 282 (866)
T ss_pred cCCCCCccCccCCCchHHHHHHHHHHHHhcCCCc--cHHHHHHHHHHHHHhc
Confidence 2 22111234332 2322222 4778888777777763
No 95
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=31.39 E-value=8.9e+02 Score=28.16 Aligned_cols=109 Identities=17% Similarity=0.272 Sum_probs=61.0
Q ss_pred HhcCCCCCcchhHHHHHHHHHHHHHHhcCchHHHHHH-HHhhHHHHHHhccccc--hhhhhHHHHHHHHHhhCCCCCCCh
Q psy9800 196 AAKNPSKPNYNHFLFEAITLAIRIVCKQNPEAVATFE-QALFPIFQVIIQQDTL--EFLPYTFQILSLLLEFRPRGSISA 272 (486)
Q Consensus 196 v~kNpsnp~f~hylFEsi~~lir~~~~~~p~~~~~~E-~~L~P~~~~IL~~dv~--EF~pYvfQIls~lle~~~~~~is~ 272 (486)
+++++++ ..+.+|++|++-...+. +..-..-++ ..++|.+..+|+.-.. |.+=.+-.+++-+. ..
T Consensus 498 ~v~~~~~---ee~~vE~LGiLaNL~~~-~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla-~d------- 565 (708)
T PF05804_consen 498 IVSSGDS---EEFVVECLGILANLTIP-DLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLA-SD------- 565 (708)
T ss_pred HhhcCCc---HHHHHHHHHHHHhcccC-CcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHH-CC-------
Confidence 3455554 36899999999998543 222233333 3788888888864433 33333333333221 11
Q ss_pred hHHHhhhhhcCccccCCCCCccchhHHHHHhhcccCccccccccchhHHHHHHHHHHHHH
Q psy9800 273 PYLELYPFLLSPVLWSRPGNIHPLVRLLRAFITKSEPSQFSATLKLNNVLGVFQKLIASK 332 (486)
Q Consensus 273 ~y~~L~~~Ll~p~lWe~~gnip~lvrlL~ayi~k~~~~~~~~~~~l~~ilgifqkli~sk 332 (486)
.-...++. +.|-++.++.+|.++-.- +++ .-+++-+|.+++.++
T Consensus 566 ---~~~A~lL~-----~sgli~~Li~LL~~kqeD---dE~-----VlQil~~f~~ll~h~ 609 (708)
T PF05804_consen 566 ---PECAPLLA-----KSGLIPTLIELLNAKQED---DEI-----VLQILYVFYQLLFHE 609 (708)
T ss_pred ---HHHHHHHH-----hCChHHHHHHHHHhhCch---HHH-----HHHHHHHHHHHHcCh
Confidence 11122222 357788888888774322 233 456666887777666
No 96
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=30.49 E-value=63 Score=28.81 Aligned_cols=52 Identities=23% Similarity=0.436 Sum_probs=37.6
Q ss_pred CCCC-ccc---hhHHHHHhhcccCccccccccchhHHHHHHHHHHHHH------HHHHHHHHh
Q psy9800 289 RPGN-IHP---LVRLLRAFITKSEPSQFSATLKLNNVLGVFQKLIASK------IFVLLFQRL 341 (486)
Q Consensus 289 ~~gn-ip~---lvrlL~ayi~k~~~~~~~~~~~l~~ilgifqkli~sk------I~~lll~RL 341 (486)
|.|- +|+ .-.+|++.+.| +.+.-.-.++|..+|.++|-+|.++ ++.++++-|
T Consensus 53 RN~i~lPsv~~Yn~VL~Si~~R-~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~L 114 (120)
T PF08579_consen 53 RNGITLPSVELYNKVLKSIAKR-ELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSL 114 (120)
T ss_pred hcCCCCCcHHHHHHHHHHHHHc-cccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 4454 565 46789999999 8765333468999999999999888 555555443
No 97
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=30.37 E-value=9.6e+02 Score=28.24 Aligned_cols=205 Identities=16% Similarity=0.152 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHHHhcCCCC---CcchhHHHHHHHHHHHHHHhcCchHHHHHHHHhhHHHHHHhccccchhhhhHHHHHH
Q psy9800 183 SDLLFQLTQRLAAAAKNPSK---PNYNHFLFEAITLAIRIVCKQNPEAVATFEQALFPIFQVIIQQDTLEFLPYTFQILS 259 (486)
Q Consensus 183 ~~l~~~L~~il~~v~kNpsn---p~f~hylFEsi~~lir~~~~~~p~~~~~~E~~L~P~~~~IL~~dv~EF~pYvfQIls 259 (486)
..++.-+.+|+.+.+.+|+| ++-...++..++.+..+.. .+.-.-..+|..+.|...--++...-=..-=+.+++|
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~it-k~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is 485 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFIT-KMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIS 485 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhc-cCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHH
Confidence 34566667788888888876 6666888888888888633 3333455667666665544444443333333455555
Q ss_pred HHHhhC-C-CCCCChhHHHhhhhhcCccccCCCCCccchhHHHHHhhcccCccccccccchhHHHHHHHHHHHHH-----
Q psy9800 260 LLLEFR-P-RGSISAPYLELYPFLLSPVLWSRPGNIHPLVRLLRAFITKSEPSQFSATLKLNNVLGVFQKLIASK----- 332 (486)
Q Consensus 260 ~lle~~-~-~~~is~~y~~L~~~Ll~p~lWe~~gnip~lvrlL~ayi~k~~~~~~~~~~~l~~ilgifqkli~sk----- 332 (486)
.+ |-. + ++-.++.|..-..++.+-.+ +--+.| +-.|+.||.. .. +. ...-+-|-++-|||++-.
T Consensus 486 ~~-eeDfkd~~ill~aye~t~ncl~nn~l---pv~ieA-alAlq~fi~~-~q--~h-~k~sahVp~tmekLLsLSn~fei 556 (970)
T COG5656 486 TI-EEDFKDNGILLEAYENTHNCLKNNHL---PVMIEA-ALALQFFIFN-EQ--SH-EKFSAHVPETMEKLLSLSNTFEI 556 (970)
T ss_pred HH-HHhcccchHHHHHHHHHHHHHhcCCc---chhhhH-HHHHHHHHhc-hh--hh-HHHHhhhhHHHHHHHHhcccccc
Confidence 55 221 1 12345666666665555111 111222 3346666666 42 11 111223444667776522
Q ss_pred -HHHHHHHHhhcCCcchhHHHHHHHHHHHHHhhChHHHHHHHHhhhcchhHHHHHHHhhcccccccCcchhhhHHHHHHH
Q psy9800 333 -IFVLLFQRLSSSKTAKYSKGLVTFLMFYVINMGATSLIQLIDSIQGSLFSMVAEKLILADLQKVSGAVNRKIAAFGLAK 411 (486)
Q Consensus 333 -I~~lll~RLq~~kt~k~~k~~v~f~~~~~~~yg~~~li~~ld~iQ~glf~~i~~~~~lp~~~~~~~~~dRKi~~vgl~~ 411 (486)
++..+++-+ +-.++--...|++++.=+..+. |--+.....-..-+..+...||-|++.|+.+
T Consensus 557 D~LS~vMe~f------------Ve~fseELspfa~eLa~~Lv~q-----Flkiaq~l~ens~d~~s~vDDKqmaasGiL~ 619 (970)
T COG5656 557 DPLSMVMESF------------VEYFSEELSPFAPELAGSLVRQ-----FLKIAQSLLENSSDTSSVVDDKQMAASGILR 619 (970)
T ss_pred hHHHHHHHHH------------HHHhHHhhchhHHHHHHHHHHH-----HHHHHHHHHcCCccccccccHHHHHHHHHHH
Confidence 444444433 2222333333444433222221 1111111111112233344599999999988
Q ss_pred Hhh
Q psy9800 412 LLT 414 (486)
Q Consensus 412 lL~ 414 (486)
.++
T Consensus 620 T~~ 622 (970)
T COG5656 620 TIE 622 (970)
T ss_pred HHH
Confidence 765
No 98
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=29.06 E-value=5.5e+02 Score=29.52 Aligned_cols=81 Identities=22% Similarity=0.337 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHHHHHhcCchHHHHH-HHHhhHHHHHHhccccchh-hhhHHHHHHHHHhhCCCCCCChhHHHhhhhhcCc
Q psy9800 207 HFLFEAITLAIRIVCKQNPEAVATF-EQALFPIFQVIIQQDTLEF-LPYTFQILSLLLEFRPRGSISAPYLELYPFLLSP 284 (486)
Q Consensus 207 hylFEsi~~lir~~~~~~p~~~~~~-E~~L~P~~~~IL~~dv~EF-~pYvfQIls~lle~~~~~~is~~y~~L~~~Ll~p 284 (486)
++-++++.++..++. .+|.-+..+ +..||+-+...|+.|-... +--+.=+|..|+-.-|. .+++....||....--
T Consensus 83 ~~Rl~~L~Ll~~~v~-~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~-~l~~~L~~Lf~If~Rl 160 (668)
T PF04388_consen 83 SYRLQALTLLGHFVR-SQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPS-SLGPHLPDLFNIFGRL 160 (668)
T ss_pred hhHHHHHHHHHHHHh-cCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccc-hhhHHHHHHHHHHHHH
Confidence 566888888877743 444444444 5578888888888875432 22222233333322332 3444444444444444
Q ss_pred cccCC
Q psy9800 285 VLWSR 289 (486)
Q Consensus 285 ~lWe~ 289 (486)
..|+.
T Consensus 161 ~~W~~ 165 (668)
T PF04388_consen 161 LSWER 165 (668)
T ss_pred HHccc
Confidence 45664
No 99
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=28.84 E-value=7.4e+02 Score=26.46 Aligned_cols=58 Identities=16% Similarity=0.171 Sum_probs=34.4
Q ss_pred hhhHHHHHHHHHhhCCCCCCChhHHHhhhhhcCc----cccCCCCCccchhHHHHHhhcccCcccc
Q psy9800 251 LPYTFQILSLLLEFRPRGSISAPYLELYPFLLSP----VLWSRPGNIHPLVRLLRAFITKSEPSQF 312 (486)
Q Consensus 251 ~pYvfQIls~lle~~~~~~is~~y~~L~~~Ll~p----~lWe~~gnip~lvrlL~ayi~k~~~~~~ 312 (486)
+...++|++..+.--+. ++.+.+..++...+-| ..+ .-+.+.+..++..|+.| +|...
T Consensus 192 I~elLeil~sii~gf~~-plk~eh~~fl~~vllPLh~~~~~--~~y~~~L~~~~~~f~~k-dp~l~ 253 (409)
T PF01603_consen 192 IAELLEILGSIINGFAV-PLKEEHKQFLRKVLLPLHKSPHL--SSYHQQLSYCVVQFLEK-DPSLA 253 (409)
T ss_dssp HHHHHHHHHHHHTT--S-S--HHHHHHHHHTTGGGGGSTGG--GGTHHHHHHHHHHHHHH--GGGH
T ss_pred HHHHHHHHHHHHhccCC-CCcHHHHHHHHHHHHHHhcCCcH--HHHHHHHHHHHHHHHHh-CchhH
Confidence 44567777777654332 5777766665443333 221 13678999999999999 98643
No 100
>KOG1525|consensus
Probab=28.24 E-value=1.3e+03 Score=28.92 Aligned_cols=77 Identities=18% Similarity=0.432 Sum_probs=52.9
Q ss_pred ccchhhhhHHHHHHHHHHhhCCCCCCccH---HHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHH----h--cCCCCC
Q psy9800 133 TADVLAPLAADLYKNLLVIFTRPGSEENE---YAMKCIMRSMSTLQDKVVPYLSDLLFQLTQRLAAA----A--KNPSKP 203 (486)
Q Consensus 133 ~~~~l~p~~~~lL~~Lf~li~~~~~~eNe---ylmk~imRii~~~~e~i~p~~~~l~~~L~~il~~v----~--kNpsnp 203 (486)
..+.+.|+...|+.+. +|.. ..++ ++.=|+--|+-.++-+. ||-.. +|.+|++.+ . .|+.+|
T Consensus 42 ~~~~~~pl~~~l~~~~--~L~h---~d~dvrllvacCvseilRi~aPea-Py~~~---~lkdIf~~~~~q~~gL~d~~sp 112 (1266)
T KOG1525|consen 42 DLASLLPLADHLIKDF--LLKH---KDKDVRLLVACCVSEILRIYAPEA-PYTDE---QLKDIFQLILSQFSGLGDVESP 112 (1266)
T ss_pred hHHHHHHHHHHHhhHH--HhcC---CCcChhHHHHHHHHHHHHHhCCCC-CCcHH---HHHHHHHHHHHHHhhccCCCCc
Confidence 4666778888888776 5655 3444 77788877777666554 66544 455554433 2 588889
Q ss_pred cch--hHHHHHHHHHHHH
Q psy9800 204 NYN--HFLFEAITLAIRI 219 (486)
Q Consensus 204 ~f~--hylFEsi~~lir~ 219 (486)
.|. .|+.|+++-+. +
T Consensus 113 ~f~r~~~lletl~~~k-~ 129 (1266)
T KOG1525|consen 113 YFKRYFYLLETLAKVK-F 129 (1266)
T ss_pred chhhHHHHHHHHHHhH-H
Confidence 887 78999999887 6
No 101
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=27.52 E-value=5.3e+02 Score=26.58 Aligned_cols=105 Identities=12% Similarity=0.200 Sum_probs=56.6
Q ss_pred HHHHHHHHHH-HHHHHhcCCCCCcchhHHHHHHHHHHHHHHhcCchHHHHHHHHhhHHHHHHhccccchh---hhhHHHH
Q psy9800 182 LSDLLFQLTQ-RLAAAAKNPSKPNYNHFLFEAITLAIRIVCKQNPEAVATFEQALFPIFQVIIQQDTLEF---LPYTFQI 257 (486)
Q Consensus 182 ~~~l~~~L~~-il~~v~kNpsnp~f~hylFEsi~~lir~~~~~~p~~~~~~E~~L~P~~~~IL~~dv~EF---~pYvfQI 257 (486)
+..+++-|.+ ++.-..+|+.+-+ .+-.+..++++++..-+.-.+.++.+=+.+|-+-..++.+|-.|| -...|..
T Consensus 65 ~~~~i~~l~~~vL~DY~~~~p~~r-~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~L 143 (319)
T PF08767_consen 65 ANNFIPPLLDAVLGDYQNSVPDAR-EPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKL 143 (319)
T ss_dssp HHHTHHHHHHHHHHHHHHS-GGGS--HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCcccc-ChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHH
Confidence 3344444433 3444455443322 477899999999984333344556665666666666667877654 3445666
Q ss_pred HHHHHhhCCCC--CCChhHHHhhhhhcCccccCCC
Q psy9800 258 LSLLLEFRPRG--SISAPYLELYPFLLSPVLWSRP 290 (486)
Q Consensus 258 ls~lle~~~~~--~is~~y~~L~~~Ll~p~lWe~~ 290 (486)
+..+.+...+. .+|+. .|..++.--.|.-+
T Consensus 144 L~~i~~~~f~~l~~lp~~---~f~~~idsi~wg~k 175 (319)
T PF08767_consen 144 LRAINEHCFPALLQLPPE---QFKLVIDSIVWGFK 175 (319)
T ss_dssp HHHHHHHHTHHHHHS-HH---HHHHHHHHHHHHHT
T ss_pred HHHHHHHhHHHHHcCCHH---HHHHHHHHHHHHhC
Confidence 66666554320 13432 34444444466643
No 102
>PF15059 Speriolin_C: Speriolin C-terminus
Probab=27.17 E-value=1.8e+02 Score=26.81 Aligned_cols=69 Identities=20% Similarity=0.256 Sum_probs=47.1
Q ss_pred cchhhhhHHHHHHHHHHhhCC-CCCCccH---HHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHHhcCCCCCcch
Q psy9800 134 ADVLAPLAADLYKNLLVIFTR-PGSEENE---YAMKCIMRSMSTLQDKVVPYLSDLLFQLTQRLAAAAKNPSKPNYN 206 (486)
Q Consensus 134 ~~~l~p~~~~lL~~Lf~li~~-~~~~eNe---ylmk~imRii~~~~e~i~p~~~~l~~~L~~il~~v~kNpsnp~f~ 206 (486)
..++-|-+-+-|-|-|+++++ |+...++ | |.++-|++. +.+-|....=+--|-+++.+.+++...|.|.
T Consensus 73 ~~~~HP~lsE~lVN~yGILr~rp~l~a~~~~~y-p~~L~~~v~---~~vPp~~l~D~llLL~CL~~Ls~~dgKPlf~ 145 (146)
T PF15059_consen 73 NRRVHPGLSEFLVNTYGILRERPELAASEGGSY-PDFLRRVVI---ETVPPSYLKDALLLLSCLCQLSKDDGKPLFI 145 (146)
T ss_pred CCccCchHHHHHHHHccccccCcccccCcCcCC-HHHHHHHHH---HhcChhhhhhHHHHHHHHHHHHhhcCCCccc
Confidence 445667788888899999965 4433222 6 888887776 3444444333334667899999999999884
No 103
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=26.32 E-value=5.4e+02 Score=25.89 Aligned_cols=105 Identities=12% Similarity=0.042 Sum_probs=64.1
Q ss_pred HHHHHhhcc--------CCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCccHHHHH
Q psy9800 94 KYSKVSHLE--------SAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEENEYAMK 165 (486)
Q Consensus 94 lp~l~~~L~--------~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~eNeylmk 165 (486)
.+.+.++|. +++..+-..|=-|+-+++.......+ .....-.-+.+.++++.-+....+..+.-+..
T Consensus 168 ~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~~~~~-----~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~ 242 (282)
T PF10521_consen 168 EDALFPCLYYLPPITPEDESLELLQAAYPALLSLLKTQENDDS-----NPRSTWLDKILREGILSSMEHESSFSYPRLRT 242 (282)
T ss_pred HHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHhhccCCc-----ccchHHHHHHHHHHHhhhceeccccCchhHHH
Confidence 667777777 56666666666678888776422101 22222233344455777775532233466677
Q ss_pred HHHHHHHHhhhhhhchHHHHHHHHHHHHHHHhcCCCCC
Q psy9800 166 CIMRSMSTLQDKVVPYLSDLLFQLTQRLAAAAKNPSKP 203 (486)
Q Consensus 166 ~imRii~~~~e~i~p~~~~l~~~L~~il~~v~kNpsnp 203 (486)
+.++-+..+-+.+.-...--++.+.-.+.++.+||.=+
T Consensus 243 ~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~npf~~ 280 (282)
T PF10521_consen 243 VLLQQLPPIIDELGISSVKHLQRIIPVLSQILENPFGT 280 (282)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCcC
Confidence 77766666666666666677777777788888888644
No 104
>PF06580 His_kinase: Histidine kinase; InterPro: IPR010559 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This family represents a region within bacterial histidine kinase enzymes. Two-component signal transduction systems such as those mediated by histidine kinase are integral parts of bacterial cellular regulatory processes, and are used to regulate the expression of genes involved in virulence. Members of this family often contain IPR003594 from INTERPRO and/or IPR003660 from INTERPRO.; GO: 0000155 two-component sensor activity, 0000160 two-component signal transduction system (phosphorelay), 0016021 integral to membrane
Probab=25.89 E-value=1.1e+02 Score=25.00 Aligned_cols=50 Identities=18% Similarity=0.337 Sum_probs=33.0
Q ss_pred cCCCCCcchhHHHHHHHHHHHHHHhcCchHHHHHHHHhhHHHHHHhccccchhhh
Q psy9800 198 KNPSKPNYNHFLFEAITLAIRIVCKQNPEAVATFEQALFPIFQVIIQQDTLEFLP 252 (486)
Q Consensus 198 kNpsnp~f~hylFEsi~~lir~~~~~~p~~~~~~E~~L~P~~~~IL~~dv~EF~p 252 (486)
++.-||+|=..++.+|..+++. + ++....+-..+--.+...+ .+-.+++|
T Consensus 6 ~~QInPHFl~NtLn~I~~l~~~---~-~~~~~~~i~~ls~~lRy~l-~~~~~~v~ 55 (82)
T PF06580_consen 6 QAQINPHFLFNTLNSISWLARI---D-PEKASEMILSLSDLLRYSL-SSKEEFVT 55 (82)
T ss_pred HhhcChHHHHHHHHHHHHHHHc---C-HHHHHHHHHHHHHHHHHHh-CCCCCeee
Confidence 3344675555555555555444 4 7777888888888888888 55566665
No 105
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=25.55 E-value=8.8e+02 Score=26.25 Aligned_cols=37 Identities=14% Similarity=0.161 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHH
Q psy9800 183 SDLLFQLTQRLAAAAKNPSKPNYNHFLFEAITLAIRI 219 (486)
Q Consensus 183 ~~l~~~L~~il~~v~kNpsnp~f~hylFEsi~~lir~ 219 (486)
...+..+.+.+-.+|++.+++.=-.-+++.+-++|++
T Consensus 171 e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y 207 (464)
T PF11864_consen 171 EDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITY 207 (464)
T ss_pred HHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHc
Confidence 3444555555555676666654335567777777776
No 106
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=25.47 E-value=6.9e+02 Score=24.96 Aligned_cols=77 Identities=12% Similarity=0.221 Sum_probs=46.0
Q ss_pred CCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhhhhhhchHHH
Q psy9800 105 HPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEENEYAMKCIMRSMSTLQDKVVPYLSD 184 (486)
Q Consensus 105 ~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~eNeylmk~imRii~~~~e~i~p~~~~ 184 (486)
++..+.||-.-+++++..-. ++.....+..+..++..+... -|=-+++.+++.... .+.-..
T Consensus 50 ~l~~~~~g~~vvq~~l~~~~---------~~~~~~i~~~~~~~~~~l~~~------~~g~~vlqkll~~~~---~~~~~~ 111 (322)
T cd07920 50 ELMVDPFGNYVIQKLFEHGT---------EEQRLQLLEKILGHVVRLSLD------MYGCRVIQKLLESIS---EEQISL 111 (322)
T ss_pred HHhcCccccHHHHHHHHhCC---------HHHHHHHHHHHHHHHHHHccc------chhHHHHHHHHHhcC---HHHHHH
Confidence 45556688888999998642 444445555555666555543 455566666666554 223345
Q ss_pred HHHHHHHHHHHHhcC
Q psy9800 185 LLFQLTQRLAAAAKN 199 (486)
Q Consensus 185 l~~~L~~il~~v~kN 199 (486)
+++.|..-+...+++
T Consensus 112 i~~~l~~~~~~L~~d 126 (322)
T cd07920 112 LVKELRGHVVELVKD 126 (322)
T ss_pred HHHHHHHCHHHHhhc
Confidence 555555555666665
No 107
>KOG0213|consensus
Probab=24.69 E-value=2.6e+02 Score=32.72 Aligned_cols=118 Identities=17% Similarity=0.119 Sum_probs=75.1
Q ss_pred cccccccH-HHHHHHhhccccCCCCCCCCCccccchhhh-hhHhhccCCcchhhH---HHHHHhhccCCCCcHHHHHHHH
Q psy9800 41 KSSTLVNL-EDFAQQHIFPELNKPDELCPNELLSPHLKQ-IFVLLFQRLSSSKTA---KYSKVSHLESAHPVVHSYASHA 115 (486)
Q Consensus 41 ~~n~lv~v-~~ff~~~V~PeL~~~~~~~~~~~~~piLka-Ky~~~FRn~l~~~~l---lp~l~~~L~~~~~vV~tyAA~a 115 (486)
+++..+.| ......|=.||+.-+ | ++||| -|++..-.+..++-+ .|++-..|.|.+.|=+.-|+.+
T Consensus 989 E~c~pFtVLPalmneYrtPe~nVQ-----n----GVLkalsf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~ 1059 (1172)
T KOG0213|consen 989 ETCGPFTVLPALMNEYRTPEANVQ-----N----GVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNV 1059 (1172)
T ss_pred hhcCchhhhHHHHhhccCchhHHH-----H----hHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHH
Confidence 34444443 334455556666433 2 89999 777777788888876 9999999999999999999999
Q ss_pred HHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhhhhhhc
Q psy9800 116 IDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEENEYAMKCIMRSMSTLQDKVVP 180 (486)
Q Consensus 116 IerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~eNeylmk~imRii~~~~e~i~p 180 (486)
|..+-.- -++.| -.+.+.+|++++=..=-.....+..++|-.+.-++-.+.|
T Consensus 1060 I~Hl~Lg-~~g~g------------~eda~iHLLN~iWpNIle~sPhviqa~~e~~eg~r~~Lg~ 1111 (1172)
T KOG0213|consen 1060 IKHLALG-VPGTG------------CEDALIHLLNLIWPNILETSPHVIQAFDEAMEGLRVALGP 1111 (1172)
T ss_pred HHHHhcC-CCCcC------------cHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHHHHhch
Confidence 9876442 12111 3456677877774211234455666666555555444444
No 108
>cd07439 FANCE_c-term Fanconi anemia complementation group E protein, C-terminal domain. Fanconi Anemia (FA) is an autosomal recessive disorder associated with increased susceptibility to various cancers, bone marrow failure, cardiac, renal, and limb malformations, and other characteristics. Cells are highly sensitive to DNA damaging agents. A multi-subunit protein complex, the FA core complex, is responsible for ubiquitination of the protein FANCD2 in response to DNA damage. This monoubiquitination results in a downstream effect on homology-directed DNA repair. FANCE is part of the FA core complex and its C-terminal domain, which is modeled here, has been shown to directly interact with FANCD2. The domain contains a five-fold repeat of a structural unit similar to ARM and HEAT repeats. FANCE appears conserved in metazoa and in plants.
Probab=24.23 E-value=1.3e+02 Score=30.30 Aligned_cols=177 Identities=18% Similarity=0.195 Sum_probs=85.4
Q ss_pred hhhhHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhhhhhhch-HHHHHHHHH-HHHHHHhcCCCCCcchhHHHHHHH
Q psy9800 137 LAPLAADLYKNLLVIFTRPGSEENEYAMKCIMRSMSTLQDKVVPY-LSDLLFQLT-QRLAAAAKNPSKPNYNHFLFEAIT 214 (486)
Q Consensus 137 l~p~~~~lL~~Lf~li~~~~~~eNeylmk~imRii~~~~e~i~p~-~~~l~~~L~-~il~~v~kNpsnp~f~hylFEsi~ 214 (486)
+.|.-++-++.+..-+..++ .+|-.+..+-+.+.....+..+- +..++..+. -.+....+-+| --++.
T Consensus 35 l~~~~~~~~~~lc~~L~~~~--~~d~~~~~Lcs~lL~~~~~~s~~~~~~~~~~l~LpKl~~l~~~aS-----R~L~~--- 104 (254)
T cd07439 35 LHSCSPSQMEVLCSQLQLSS--LSDQTLLLLCSSLLPLSPDLSLANAVVFTRHLLLPKLLSLNESAS-----RALVA--- 104 (254)
T ss_pred HccCCHHHHHHHHHHhccCC--cccHHHHHHHHHHhccCCccCcccHHHHHHHHHhhhhhccCcchh-----HHHHH---
Confidence 34555567777777775533 77777777777666554322222 233333322 11111111111 11222
Q ss_pred HHHHHHHhcCchHHHHHHHHhhHHHHHHhccccchhhhhHHHHHHHHHhhCCCCCCChhHHHh-hhhhcCccccCCCCCc
Q psy9800 215 LAIRIVCKQNPEAVATFEQALFPIFQVIIQQDTLEFLPYTFQILSLLLEFRPRGSISAPYLEL-YPFLLSPVLWSRPGNI 293 (486)
Q Consensus 215 ~lir~~~~~~p~~~~~~E~~L~P~~~~IL~~dv~EF~pYvfQIls~lle~~~~~~is~~y~~L-~~~Ll~p~lWe~~gni 293 (486)
+++.+ |+.+|. +..|..++|+.+.-- +..|. -+++.-+++- ..++.|..+ +..++...
T Consensus 105 al~~f-~~r~~~--~~ceall~PLl~~~~---~~~~q---~ell~rlike----~~~~~~~~l~~~q~L~~~-------- 163 (254)
T cd07439 105 ALASF-AKRYPR--PFCEALLRPLLQCPH---PGPFQ---AELLCRLVKE----CFEPDAVLLLLHQILISP-------- 163 (254)
T ss_pred HHHHH-HHhCCh--hHHHHHHHHHHHCCC---CCHHH---HHHHHHHHhc----cccHHHHHHHHHHHHccc--------
Confidence 33333 455663 566777777643321 22222 2344444321 123333322 22222221
Q ss_pred cchhHHHHHhhcccCccccccccchhHHHHHHHHHHHHH------HHHHHHHHhhc-----CCcchhHHHHHHHHHHHHH
Q psy9800 294 HPLVRLLRAFITKSEPSQFSATLKLNNVLGVFQKLIASK------IFVLLFQRLSS-----SKTAKYSKGLVTFLMFYVI 362 (486)
Q Consensus 294 p~lvrlL~ayi~k~~~~~~~~~~~l~~ilgifqkli~sk------I~~lll~RLq~-----~kt~k~~k~~v~f~~~~~~ 362 (486)
+ + ..=|.++.+||.+++++ .+..+.++|+. +|.-|| ..++..++.
T Consensus 164 ----------------~-~---~W~E~~~~v~q~lL~~~~~lte~~~~~Lv~~L~~~a~~~skSlkF----a~lll~~it 219 (254)
T cd07439 164 ----------------N-L---VWTEETFTVIQALLNRKPPLSEESFSELVSKLQEQAEAFSKSLKF----AKLLLAVIT 219 (254)
T ss_pred ----------------c-c---cccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhccccH----HHHHHHHHH
Confidence 1 0 12355666666666666 66667777653 344444 566677778
Q ss_pred hhChHH
Q psy9800 363 NMGATS 368 (486)
Q Consensus 363 ~yg~~~ 368 (486)
|||+..
T Consensus 220 ky~~~~ 225 (254)
T cd07439 220 KYGPQM 225 (254)
T ss_pred HccHhh
Confidence 998873
No 109
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=23.87 E-value=3.9e+02 Score=26.92 Aligned_cols=38 Identities=18% Similarity=0.214 Sum_probs=26.6
Q ss_pred HHHHHHhhHHHHHHhccccchhhhhHHHHHHHHHhhCC
Q psy9800 229 ATFEQALFPIFQVIIQQDTLEFLPYTFQILSLLLEFRP 266 (486)
Q Consensus 229 ~~~E~~L~P~~~~IL~~dv~EF~pYvfQIls~lle~~~ 266 (486)
+.++-.++-.+...|.+-...+--.++|||..++....
T Consensus 183 P~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d 220 (262)
T PF14225_consen 183 PDHEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVD 220 (262)
T ss_pred chhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhcccc
Confidence 45555566667777777777777778888888776643
No 110
>KOG1058|consensus
Probab=22.12 E-value=8.3e+02 Score=28.73 Aligned_cols=39 Identities=10% Similarity=-0.072 Sum_probs=25.2
Q ss_pred hhHhhccCCcchh--hHHHHHHhhccCCCCcHHHHHHHHHH
Q psy9800 79 IFVLLFQRLSSSK--TAKYSKVSHLESAHPVVHSYASHAID 117 (486)
Q Consensus 79 Ky~~~FRn~l~~~--~llp~l~~~L~~~~~vV~tyAA~aIe 117 (486)
.+++.=+.--|.+ ..+..+.++|.+.+..|.-+||.++-
T Consensus 228 E~Irkv~~~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv 268 (948)
T KOG1058|consen 228 ELIRKVCLANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLV 268 (948)
T ss_pred HHHHHHHhcCHHHhhHHHHHHHHHHhcCCchhhhhhcceEE
Confidence 4444444433333 33888888999988888878776554
No 111
>KOG1222|consensus
Probab=21.83 E-value=8.7e+02 Score=27.18 Aligned_cols=112 Identities=21% Similarity=0.202 Sum_probs=64.9
Q ss_pred HHHHhcCCCCCcchhHHHHHHHHHHHHHHhcCchHHHHH--HHHhhHHHHHHhccccchhhhhHHHHHHHHHhhCCCCCC
Q psy9800 193 LAAAAKNPSKPNYNHFLFEAITLAIRIVCKQNPEAVATF--EQALFPIFQVIIQQDTLEFLPYTFQILSLLLEFRPRGSI 270 (486)
Q Consensus 193 l~~v~kNpsnp~f~hylFEsi~~lir~~~~~~p~~~~~~--E~~L~P~~~~IL~~dv~EF~pYvfQIls~lle~~~~~~i 270 (486)
+..+++|..+. .+..||+|++-......-+ .+++ +..|.|.+..+|+.-.. --.-|+|+.-.+=...+
T Consensus 509 La~i~~nd~~E---~F~~EClGtlanL~v~dld--w~~ilq~~~LvPw~k~~L~pga~-eddLvL~~vi~~GT~a~---- 578 (791)
T KOG1222|consen 509 LAGIAKNDNSE---SFGLECLGTLANLKVTDLD--WAKILQSENLVPWMKTQLQPGAD-EDDLVLQIVIACGTMAR---- 578 (791)
T ss_pred HHHHhhcCchH---HHHHHHHHHHhhcccCCCC--HHHHHhhccccHHHHHhhcCCcc-chhhhhHHHHHhhhhhh----
Confidence 44556664443 3789999999887332111 1222 45688999999875443 23466777755432222
Q ss_pred ChhHHHhhhhhcCccccCCCCCccchhHHHHHhhcccCccccccccchhHHHHHHHHHHHH
Q psy9800 271 SAPYLELYPFLLSPVLWSRPGNIHPLVRLLRAFITKSEPSQFSATLKLNNVLGVFQKLIAS 331 (486)
Q Consensus 271 s~~y~~L~~~Ll~p~lWe~~gnip~lvrlL~ayi~k~~~~~~~~~~~l~~ilgifqkli~s 331 (486)
......|+. +.+-||+++-||+|.=.- ++| .-+|+=||+..+.+
T Consensus 579 ----d~~cA~Lla-----~a~~i~tlieLL~a~QeD---DEf-----V~QiiyVF~Q~l~H 622 (791)
T KOG1222|consen 579 ----DLDCARLLA-----PAKLIDTLIELLQACQED---DEF-----VVQIIYVFLQFLKH 622 (791)
T ss_pred ----hhHHHHHhC-----ccccHHHHHHHHHhhccc---chH-----HHHHHHHHHHHHHH
Confidence 123333444 567899999999985433 233 33455566655544
No 112
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=20.69 E-value=5.3e+02 Score=26.67 Aligned_cols=110 Identities=16% Similarity=0.207 Sum_probs=64.7
Q ss_pred cccHHHHHHHhhccccCCCCCCCCCccccchhhh--hhHhhccCCcchhhH------HHHHHhhccCCCCcHHHHHHHHH
Q psy9800 45 LVNLEDFAQQHIFPELNKPDELCPNELLSPHLKQ--IFVLLFQRLSSSKTA------KYSKVSHLESAHPVVHSYASHAI 116 (486)
Q Consensus 45 lv~v~~ff~~~V~PeL~~~~~~~~~~~~~piLka--Ky~~~FRn~l~~~~l------lp~l~~~L~~~~~vV~tyAA~aI 116 (486)
.+.|-.=..+..-|.|.++ -..|| =|-+.|.+.-+..-. .|.+..++...+.-|+..-=.-+
T Consensus 52 k~~v~krLaqCL~P~LPsG----------VH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~ 121 (307)
T PF04118_consen 52 KLQVSKRLAQCLNPALPSG----------VHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIY 121 (307)
T ss_pred HHHHHHHHHHhcCCCCChH----------HHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4467777778888888432 35777 666778876554322 55555555444444444433344
Q ss_pred HHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhhhhh
Q psy9800 117 DRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEENEYAMKCIMRSMSTLQDKV 178 (486)
Q Consensus 117 erlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~eNeylmk~imRii~~~~e~i 178 (486)
|+.+. . ..+ .++|.++.++..++--+++ ||...-+-+++++..+++.+
T Consensus 122 e~~~l-p--------L~~-~L~p~l~~li~slLpGLed----e~sE~~~~~~~ll~~l~~~v 169 (307)
T PF04118_consen 122 EKYYL-P--------LGP-ALRPCLKGLILSLLPGLED----EGSEFFDRTLKLLDKLKEAV 169 (307)
T ss_pred HHHhc-C--------ccH-HHHHHHHHHHHHhcccccc----CCchHHHHHHHHHHHHHHhc
Confidence 44433 1 124 8899999999999888876 34444444444444444444
No 113
>KOG1060|consensus
Probab=20.55 E-value=1.6e+02 Score=34.32 Aligned_cols=84 Identities=20% Similarity=0.143 Sum_probs=52.2
Q ss_pred hhHHHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCccHHHHHHHHHH
Q psy9800 91 KTAKYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEENEYAMKCIMRS 170 (486)
Q Consensus 91 ~~llp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~eNeylmk~imRi 170 (486)
++.+..|+++|.+.+--|-+.|+..|.|++..+ + +--..++.+|+++++. ..=.-.=.+|.-.
T Consensus 428 ~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~-p-------------~~h~~ii~~La~lldt---i~vp~ARA~IiWL 490 (968)
T KOG1060|consen 428 DTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKD-P-------------AEHLEILFQLARLLDT---ILVPAARAGIIWL 490 (968)
T ss_pred hHHHHHHHHHHhcccchhHHHHHHHHHHHHhhC-h-------------HHHHHHHHHHHHHhhh---hhhhhhhceeeee
Confidence 344999999999988888899999999998765 2 1234577777777743 2222222334444
Q ss_pred HHHhhhhhhchHHHHHHHHHH
Q psy9800 171 MSTLQDKVVPYLSDLLFQLTQ 191 (486)
Q Consensus 171 i~~~~e~i~p~~~~l~~~L~~ 191 (486)
+....+.+--++.+++..++.
T Consensus 491 ige~~e~vpri~PDVLR~lak 511 (968)
T KOG1060|consen 491 IGEYCEIVPRIAPDVLRKLAK 511 (968)
T ss_pred ehhhhhhcchhchHHHHHHHH
Confidence 444444444445555555554
No 114
>KOG2549|consensus
Probab=20.16 E-value=1.3e+03 Score=26.09 Aligned_cols=145 Identities=12% Similarity=0.177 Sum_probs=94.0
Q ss_pred CCcchhhH--HHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCC----Cc
Q psy9800 86 RLSSSKTA--KYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGS----EE 159 (486)
Q Consensus 86 n~l~~~~l--lp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~----~e 159 (486)
..+++|+- +.-+...+.+.+..-+-.|-.+|| .+. | +.+++-.+-..|.++-+ ..
T Consensus 199 h~LS~ElQlYy~~It~a~~g~~~~~r~eAL~sL~------TDs-G------------L~~LlPyFv~fIae~vs~ni~~~ 259 (576)
T KOG2549|consen 199 HVLSVELQLYYKEITEACTGSDEPLRQEALQSLE------TDS-G------------LQQLLPYFVTFIAEGVSVNIVQN 259 (576)
T ss_pred hhccHHHHHHHHHHHHHHhcCCHHHHHHHHHhhc------cCc-c------------HHHHHHHHHHHHhhheeeccccc
Confidence 34555544 677777666677777766666665 121 2 55566666566655332 34
Q ss_pred cHHHHHHHHHHHHHhhh----hhhchHHHHHHHHHHHHH--HHhcCCCCCcchhHHHHHHHHH-HHHHHhcCchHHHHHH
Q psy9800 160 NEYAMKCIMRSMSTLQD----KVVPYLSDLLFQLTQRLA--AAAKNPSKPNYNHFLFEAITLA-IRIVCKQNPEAVATFE 232 (486)
Q Consensus 160 Neylmk~imRii~~~~e----~i~p~~~~l~~~L~~il~--~v~kNpsnp~f~hylFEsi~~l-ir~~~~~~p~~~~~~E 232 (486)
|=-+.-.+||++--+-+ .+-||.-.++.-+..|+. .+|..| +.-||+...=.++- +.++|+...+.+..+-
T Consensus 260 nL~lL~~lm~m~rSLl~Np~i~lepYlh~L~PSvlTCvVsk~l~~~p--~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~ 337 (576)
T KOG2549|consen 260 NLELLIYLMRMVRSLLDNPNIFLEPYLHQLVPSVLTCVVSKNLCLRP--ELDNHWALRDFAARLLAQICKNFSTLYNNLQ 337 (576)
T ss_pred cHHHHHHHHHHHHHHhcCCccchhhHHHHHhhHHHHhhhhhhccCCc--cccchHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 44555556666554433 366888888888888753 334333 34468887766543 3457888889999999
Q ss_pred HHhhHHHHHHhccccchhh
Q psy9800 233 QALFPIFQVIIQQDTLEFL 251 (486)
Q Consensus 233 ~~L~P~~~~IL~~dv~EF~ 251 (486)
..++-.+..+|..+...|-
T Consensus 338 ~Rit~tl~k~l~D~~~~~s 356 (576)
T KOG2549|consen 338 PRITRTLSKALLDNKKPLS 356 (576)
T ss_pred HHHHHHHHHHhcCCCCCch
Confidence 9999999999988877664
Done!