Query psy9800
Match_columns 486
No_of_seqs 145 out of 289
Neff 6.4
Searched_HMMs 29240
Date Fri Aug 16 20:03:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9800.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9800hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wa5_C Importin alpha RE-expor 100.0 6.2E-61 2.1E-65 548.8 38.6 463 2-482 393-912 (960)
2 3m1i_C Exportin-1; heat repeat 99.5 6.1E-14 2.1E-18 161.9 12.4 311 16-362 468-833 (1049)
3 2x19_B Importin-13; nuclear tr 99.5 2.6E-12 9E-17 145.9 22.7 256 16-305 464-752 (963)
4 2x1g_F Cadmus; transport prote 99.3 3.3E-11 1.1E-15 137.4 21.7 256 16-306 479-761 (971)
5 4fdd_A Transportin-1; heat rep 98.9 5.3E-07 1.8E-11 101.2 27.4 354 6-419 361-789 (852)
6 2bpt_A Importin beta-1 subunit 98.4 2.3E-05 7.8E-10 86.8 21.7 239 16-283 384-646 (861)
7 1qgr_A Protein (importin beta 98.3 2.6E-05 8.9E-10 86.5 21.5 218 92-330 408-659 (876)
8 1qgr_A Protein (importin beta 97.8 0.00028 9.4E-09 78.2 15.8 273 16-323 381-737 (876)
9 4fdd_A Transportin-1; heat rep 97.5 0.0033 1.1E-07 70.3 19.6 157 91-264 399-558 (852)
10 3ibv_A Exportin-T; karyopherin 97.4 0.048 1.6E-06 62.7 27.9 361 16-416 458-872 (980)
11 2bpt_A Importin beta-1 subunit 97.1 0.017 5.9E-07 63.6 18.9 173 93-283 412-604 (861)
12 3ibv_A Exportin-T; karyopherin 96.6 0.023 8E-07 65.3 15.3 137 92-241 490-651 (980)
13 2qk1_A Protein STU2; STU2P, XM 96.3 0.021 7.1E-07 55.1 10.8 128 79-220 87-222 (249)
14 1wa5_C Importin alpha RE-expor 96.3 0.19 6.7E-06 57.0 20.6 152 96-264 459-629 (960)
15 2vgl_B AP-2 complex subunit be 96.1 0.68 2.3E-05 49.7 22.6 229 51-312 86-369 (591)
16 1u6g_C TIP120 protein, CAND1; 95.8 0.15 5E-06 59.4 16.7 113 91-219 474-599 (1230)
17 1w63_A Adapter-related protein 95.3 0.91 3.1E-05 49.1 19.8 67 47-122 103-172 (618)
18 2x1g_F Cadmus; transport prote 95.2 2.5 8.6E-05 47.6 23.8 125 103-246 517-644 (971)
19 2x19_B Importin-13; nuclear tr 95.2 2.9 0.0001 46.9 24.1 145 101-264 498-650 (963)
20 4hat_C Exportin-1; heat repeat 95.0 0.16 5.5E-06 58.7 13.3 78 94-175 542-621 (1023)
21 4b8j_A Importin subunit alpha- 94.6 0.64 2.2E-05 48.4 15.8 152 94-262 119-272 (528)
22 1u6g_C TIP120 protein, CAND1; 94.6 0.69 2.4E-05 53.7 17.3 174 90-284 46-225 (1230)
23 4hxt_A De novo protein OR329; 94.5 0.7 2.4E-05 42.3 14.0 157 93-267 87-245 (252)
24 2vgl_A Adaptor protein complex 94.2 0.36 1.2E-05 52.5 12.9 103 47-174 107-214 (621)
25 2qk1_A Protein STU2; STU2P, XM 93.8 0.64 2.2E-05 44.4 12.5 156 91-265 59-222 (249)
26 2qk2_A LP04448P; mini spindles 93.5 0.97 3.3E-05 42.2 13.1 141 16-185 72-219 (242)
27 1ibr_B P95, importin beta-1 su 93.3 0.68 2.3E-05 46.5 12.4 188 83-283 251-458 (462)
28 2qk2_A LP04448P; mini spindles 92.6 2.4 8.1E-05 39.4 14.4 150 91-264 55-206 (242)
29 2jdq_A Importin alpha-1 subuni 92.0 1.6 5.4E-05 43.8 13.1 155 94-265 22-181 (450)
30 4hat_C Exportin-1; heat repeat 92.0 1.4 4.8E-05 50.9 14.0 110 94-219 497-619 (1023)
31 4db6_A Armadillo repeat protei 91.5 1.6 5.5E-05 39.1 11.4 150 94-261 56-207 (210)
32 4db6_A Armadillo repeat protei 91.2 5.1 0.00018 35.6 14.4 152 94-263 14-167 (210)
33 1ibr_B P95, importin beta-1 su 91.0 0.56 1.9E-05 47.1 8.5 168 93-282 91-265 (462)
34 1xqr_A HSPBP1 protein; armadil 91.0 2.1 7.1E-05 42.2 12.4 154 94-264 83-239 (296)
35 4hxt_A De novo protein OR329; 90.2 8.2 0.00028 34.9 15.0 151 94-262 4-156 (252)
36 4db8_A Armadillo-repeat protei 89.9 4 0.00014 37.5 12.7 151 94-262 14-166 (252)
37 4b8j_A Importin subunit alpha- 89.8 1.9 6.5E-05 44.8 11.5 156 94-265 288-445 (528)
38 3tpo_A Importin subunit alpha- 89.8 21 0.00072 37.2 22.0 157 94-263 121-280 (529)
39 1b3u_A Protein (protein phosph 88.9 3.5 0.00012 42.7 12.7 152 90-266 162-313 (588)
40 3ul1_B Importin subunit alpha- 88.5 7.8 0.00027 40.4 15.2 157 94-263 102-261 (510)
41 3tpo_A Importin subunit alpha- 88.5 4.8 0.00016 42.2 13.6 156 94-266 295-452 (529)
42 4db8_A Armadillo-repeat protei 88.4 5.6 0.00019 36.4 12.6 151 94-262 56-208 (252)
43 2jdq_A Importin alpha-1 subuni 88.2 4.6 0.00016 40.3 12.7 156 93-265 235-392 (450)
44 1wa5_B Importin alpha subunit; 88.0 5 0.00017 41.7 13.2 152 93-262 216-369 (530)
45 1wa5_B Importin alpha subunit; 87.4 14 0.00049 38.2 16.4 153 93-264 258-413 (530)
46 1b3u_A Protein (protein phosph 87.2 5 0.00017 41.5 12.6 147 91-263 86-232 (588)
47 3ul1_B Importin subunit alpha- 84.6 5.7 0.0002 41.5 11.5 156 94-266 276-433 (510)
48 3gjx_A Exportin-1; transport, 83.6 16 0.00054 42.4 15.5 76 139-219 562-645 (1073)
49 2z6g_A B-catenin; FULL-length, 83.6 8.5 0.00029 42.7 12.9 148 94-259 152-301 (780)
50 2vgl_A Adaptor protein complex 82.8 32 0.0011 37.0 16.8 174 74-263 162-358 (621)
51 1jdh_A Beta-catenin; beta-cate 82.3 17 0.00058 37.0 13.8 148 94-259 19-168 (529)
52 3gjx_A Exportin-1; transport, 81.8 12 0.00041 43.4 13.6 104 94-201 568-679 (1073)
53 2z6h_A Catenin beta-1, beta-ca 79.7 25 0.00086 37.5 14.6 148 94-259 16-165 (644)
54 3m1i_C Exportin-1; heat repeat 78.5 3.8 0.00013 46.9 7.9 94 139-239 536-637 (1049)
55 3now_A UNC-45 protein, SD10334 76.5 53 0.0018 36.9 16.3 69 82-155 321-389 (810)
56 1w63_A Adapter-related protein 73.6 77 0.0026 33.8 16.3 79 91-176 178-263 (618)
57 1xqr_A HSPBP1 protein; armadil 69.7 64 0.0022 31.3 13.4 148 93-262 125-286 (296)
58 3b2a_A TON_1937, putative unch 69.2 25 0.00087 33.9 9.8 108 94-216 35-142 (265)
59 2vgl_B AP-2 complex subunit be 67.7 41 0.0014 35.6 12.4 31 91-121 48-78 (591)
60 3tjz_B Coatomer subunit gamma; 64.6 24 0.00084 35.6 9.3 62 51-121 104-168 (355)
61 2z6h_A Catenin beta-1, beta-ca 63.4 1.2E+02 0.0041 32.1 15.2 152 94-263 100-253 (644)
62 3tt9_A Plakophilin-2; cell adh 58.9 28 0.00097 32.8 8.1 154 82-247 37-207 (233)
63 3now_A UNC-45 protein, SD10334 57.9 58 0.002 36.5 11.6 153 94-266 625-785 (810)
64 1xm9_A Plakophilin 1; armadill 56.0 80 0.0027 32.2 11.7 150 83-245 30-196 (457)
65 2z6g_A B-catenin; FULL-length, 53.0 1.9E+02 0.0063 31.8 14.7 147 94-262 236-388 (780)
66 2iw3_A Elongation factor 3A; a 47.8 89 0.003 35.9 11.1 65 82-154 238-305 (986)
67 1jdh_A Beta-catenin; beta-cate 46.1 2.4E+02 0.0082 28.2 15.3 149 94-264 103-257 (529)
68 3a6p_A Exportin-5; exportin-5, 45.3 2.3E+02 0.0079 32.9 14.5 136 93-244 530-682 (1204)
69 3ltj_A Alpharep-4; protein eng 41.8 1.6E+02 0.0053 25.5 9.9 75 74-176 59-136 (201)
70 1oyz_A Hypothetical protein YI 40.7 1.7E+02 0.0059 26.8 10.5 82 91-190 53-134 (280)
71 4gmo_A Putative uncharacterize 39.5 46 0.0016 36.2 6.9 28 93-121 36-63 (684)
72 3nmw_A APC variant protein; AR 38.2 3E+02 0.01 27.1 12.4 155 94-261 129-290 (354)
73 1xm9_A Plakophilin 1; armadill 37.8 2.5E+02 0.0085 28.4 12.0 156 94-262 285-448 (457)
74 3nmz_A APC variant protein; pr 33.3 4.2E+02 0.014 27.2 15.5 159 94-261 72-270 (458)
75 2ilr_A Protein FACE, fanconi a 32.1 1.6E+02 0.0053 28.5 8.6 100 221-366 119-230 (264)
76 3gs3_A Symplekin, LD45768P; he 31.5 2.2E+02 0.0077 27.1 9.6 111 79-221 40-150 (257)
77 3tt9_A Plakophilin-2; cell adh 31.1 3.3E+02 0.011 25.3 11.4 29 94-122 10-40 (233)
78 3bww_A Protein of unknown func 30.4 21 0.00072 35.4 2.1 42 260-302 238-285 (307)
79 3nmz_A APC variant protein; pr 29.9 4.7E+02 0.016 26.8 15.8 155 94-261 245-406 (458)
80 2d5u_A N-glycanase 1; pngase, 28.9 55 0.0019 28.0 4.3 26 181-206 32-57 (124)
81 2ccq_A P97, peptide N-glycanas 28.7 58 0.002 26.7 4.2 25 182-206 18-42 (99)
82 3l6x_A Catenin delta-1; cateni 28.0 5.1E+02 0.017 27.6 12.7 121 91-226 354-479 (584)
83 3grl_A General vesicular trans 26.7 6E+02 0.021 27.6 12.9 54 211-266 185-244 (651)
84 3ltj_A Alpharep-4; protein eng 25.8 3.1E+02 0.011 23.4 11.5 58 49-119 12-72 (201)
85 3l6x_A Catenin delta-1; cateni 25.5 6.4E+02 0.022 26.9 15.5 157 94-263 310-476 (584)
86 4atg_A TAF6; transcription, TF 24.3 2.1E+02 0.0073 26.2 7.7 141 82-245 30-179 (196)
87 2jak_A Serine/threonine-protei 23.8 5.9E+02 0.02 25.9 11.6 132 144-289 175-307 (392)
88 3o2t_A Symplekin; heat repeat, 22.6 6.1E+02 0.021 25.6 13.2 115 75-221 45-160 (386)
89 3fga_B Serine/threonine-protei 22.5 5E+02 0.017 26.5 10.8 132 144-289 130-262 (403)
90 3opb_A SWI5-dependent HO expre 22.2 6.8E+02 0.023 27.8 12.5 228 16-262 388-634 (778)
91 1te4_A Conserved protein MTH18 21.7 93 0.0032 25.4 4.4 28 92-119 73-100 (131)
92 2ca5_A MXIH; transport protein 21.6 58 0.002 26.1 2.7 28 177-204 18-45 (85)
93 3ltm_A Alpha-REP4; protein eng 21.0 2.8E+02 0.0096 24.0 7.8 27 93-119 82-108 (211)
94 3nmw_A APC variant protein; AR 20.3 5E+02 0.017 25.4 10.2 156 94-266 172-337 (354)
No 1
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=100.00 E-value=6.2e-61 Score=548.85 Aligned_cols=463 Identities=30% Similarity=0.513 Sum_probs=409.3
Q ss_pred hhhHHHHHHHHHhh-------------hhhhHHHHHHHHHhhcccccccccccccccccHHHHHHHhhccccCCCCCCCC
Q psy9800 2 EDKMMGTFGAYVEI-------------KYKDTAIYLVTSLASQGSTVKHGTTKSSTLVNLEDFAQQHIFPELNKPDELCP 68 (486)
Q Consensus 2 e~~vt~i~~~yi~~-------------r~KD~Ai~Lv~sla~~~~t~~~Gvt~~n~lv~v~~ff~~~V~PeL~~~~~~~~ 68 (486)
++.++..+..|+++ |.||+|+|+++++|.+|.+.+.|++++++++++++|+.++|+|+|++++
T Consensus 393 ~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~---- 468 (960)
T 1wa5_C 393 EVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNN---- 468 (960)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSS----
T ss_pred chhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCC----
Confidence 44566555555532 8999999999999998865566888889999999999999999998763
Q ss_pred Cccccchhhh---hhHhhccCCcchhhH---HHHHHhhccCCCCcHHHHHHHHHHHHHcccCCC-CCCcccccchhhhhH
Q psy9800 69 NELLSPHLKQ---IFVLLFQRLSSSKTA---KYSKVSHLESAHPVVHSYASHAIDRVLVMRSPN-GQGTLVTADVLAPLA 141 (486)
Q Consensus 69 ~~~~~piLka---Ky~~~FRn~l~~~~l---lp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~-~~~~~~~~~~l~p~~ 141 (486)
+.+ |++|+ +++-.|++.++++.+ +|.++++|.+++.+|+++||.|+++++..++++ +|++.+.++.+.|++
T Consensus 469 ~~~--p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l 546 (960)
T 1wa5_C 469 IPH--IILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNST 546 (960)
T ss_dssp CSC--HHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTH
T ss_pred CCC--ceehHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhH
Confidence 223 99998 889999999887766 999999999999999999999999999876521 156677889999999
Q ss_pred HHHHHHHHHhhCCCC-----CCccHHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHH
Q psy9800 142 ADLYKNLLVIFTRPG-----SEENEYAMKCIMRSMSTLQDKVVPYLSDLLFQLTQRLAAAAKNPSKPNYNHFLFEAITLA 216 (486)
Q Consensus 142 ~~lL~~Lf~li~~~~-----~~eNeylmk~imRii~~~~e~i~p~~~~l~~~L~~il~~v~kNpsnp~f~hylFEsi~~l 216 (486)
++++++|++++++.+ ..+||++|+|+++++..+++++.||+..++++|..++..+++||+||.|.|++||+++++
T Consensus 547 ~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l 626 (960)
T 1wa5_C 547 EILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAI 626 (960)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHH
Confidence 999999999998742 349999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCchHHHHHHHHhhHHHHHHhccccchhhhhHHHHHHHHHhhCCCCCCChhHHHhhhhhcCccccCCCCCccch
Q psy9800 217 IRIVCKQNPEAVATFEQALFPIFQVIIQQDTLEFLPYTFQILSLLLEFRPRGSISAPYLELYPFLLSPVLWSRPGNIHPL 296 (486)
Q Consensus 217 ir~~~~~~p~~~~~~E~~L~P~~~~IL~~dv~EF~pYvfQIls~lle~~~~~~is~~y~~L~~~Ll~p~lWe~~gnip~l 296 (486)
++. ..|+....+|+.++|++..+|++|+.||+||+||+++.+++... ++++.||++|+++++|..|+++|++|++
T Consensus 627 ~~~---~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 701 (960)
T 1wa5_C 627 LNY---TQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSA--TIPESIKPLAQPLLAPNVWELKGNIPAV 701 (960)
T ss_dssp HHT---SCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHCS--SCCTTTGGGHHHHTSGGGGCCTTTHHHH
T ss_pred Hhc---CCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhcc--CCCHHHHHHHHHHcCHHHhcCCCCchhH
Confidence 997 57788999999999999999999999999999999999999983 6999999999999999999999999999
Q ss_pred hHHHHHhhcccCccccccccchhHHHHHHHHHHHHH----------------------------HHHHHHHHhhcCCcch
Q psy9800 297 VRLLRAFITKSEPSQFSATLKLNNVLGVFQKLIASK----------------------------IFVLLFQRLSSSKTAK 348 (486)
Q Consensus 297 vrlL~ayi~k~~~~~~~~~~~l~~ilgifqkli~sk----------------------------I~~lll~RLq~~kt~k 348 (486)
+|+|++|+.+ +++.+.+ ++.++++|++++++| ++.++++||+.+||++
T Consensus 702 ~~~L~~~~~~-~~~~~~~---~~~~l~~~~~~~~~~~~~~~a~~ll~~i~~~~~~~~~~~yl~~i~~~l~~~l~~~~~~~ 777 (960)
T 1wa5_C 702 TRLLKSFIKT-DSSIFPD---LVPVLGIFQRLIASKAYEVHGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSKTER 777 (960)
T ss_dssp HHHHHHHHHH-HGGGCSC---SHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHGGGSSCCHH
T ss_pred HHHHHHHHHh-ChHHHHH---HHHHHHHHHHHhCCCcccchHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHh
Confidence 9999999999 9988875 889999999998775 8999999999999999
Q ss_pred hHHHHHHHHHHHHHhhChHHHHHHHHhhhcchhHHHHHHHhhcccccccCcchhhhHHHHHHHHhhhhccccCCCCCc--
Q psy9800 349 YSKGLVTFLMFYVINMGATSLIQLIDSIQGSLFSMVAEKLILADLQKVSGAVNRKIAAFGLAKLLTEAKEVTEGPYVQ-- 426 (486)
Q Consensus 349 ~~k~~v~f~~~~~~~yg~~~li~~ld~iQ~glf~~i~~~~~lp~~~~~~~~~dRKi~~vgl~~lL~~~~~~~~~~~~~-- 426 (486)
+.+++++|+|.++.+|||+.+++.+|++|+|.|.+++.+.|+|+++++.+.+|||+|++|++++++.+ .+.++.+..
T Consensus 778 ~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~f~~~~~~~w~~~~~~~~~~~erk~~~~gl~~ll~~~-~~~~~~~~~~~ 856 (960)
T 1wa5_C 778 YVKKLTVFFGLISNKLGSDFLIHFIDEVQDGLFQQIWGNFIITTLPTIGNLLDRKIALIGVLNMVING-QFFQSKYPTLI 856 (960)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHTTSTTHHHHHHHHTHHHHGGGCCSHHHHHHHHHHHHHHHHSC-HHHHHHCGGGH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHhcchhHHHHHHHHHhccchhhccCHHHHHHHHHHHHHHHhcc-cccchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999987 222222332
Q ss_pred hhHHHHHHHHhcCCCCCCCCCC--CcccchhhhcCCccccccccccccCCCCCCCCCC
Q psy9800 427 APLTGALLNLIQLPEDDSTQPE--DHFVDIENILEYDAAYSKLTFAADKEEYDPLSDI 482 (486)
Q Consensus 427 ~~ll~~l~~ll~~p~~~~~~~~--~~~~~~~~~~~y~~~f~~L~~~~~~~~~Dp~~~i 482 (486)
+.++++++++++.|+++...+| |++ |+||..||+++|++|++++ +++.||+++|
T Consensus 857 ~~~~~~i~~l~~~~~~~~~~~~~~e~~-d~~~~~~~~~~~~~L~~~~-~~~~dp~~~i 912 (960)
T 1wa5_C 857 SSTMNSIIETASSQSIANLKNDYVDLD-NLEEISTFGSHFSKLVSIS-EKPFDPLPEI 912 (960)
T ss_dssp HHHHHHHHHHHHSCSTTCSCCSCC------CCCCCTTCCCCCCGGGC-CCCCCSCTTS
T ss_pred HHHHHHHHHHHhCCcccccCCcccccc-ccccccccchHHHHHHhCC-CCCCCChhhh
Confidence 8999999999999887765332 222 3444558999999999999 8999999998
No 2
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.49 E-value=6.1e-14 Score=161.94 Aligned_cols=311 Identities=12% Similarity=0.125 Sum_probs=208.9
Q ss_pred hhhhHHHHHHHHHhhcccccccccccccc-cccHHHHHHHhhccccCCCCCCCCCccccchhhh-------hhHhhccCC
Q psy9800 16 KYKDTAIYLVTSLASQGSTVKHGTTKSST-LVNLEDFAQQHIFPELNKPDELCPNELLSPHLKQ-------IFVLLFQRL 87 (486)
Q Consensus 16 r~KD~Ai~Lv~sla~~~~t~~~Gvt~~n~-lv~v~~ff~~~V~PeL~~~~~~~~~~~~~piLka-------Ky~~~FRn~ 87 (486)
|.+|+|+|.++|+|.... ....+. +.+|++++.+ +|++.++. ... |.++. +|.--|+++
T Consensus 468 ~~~eaal~algsia~~~~-----~~~e~~~l~~v~~~l~~--l~~~~~~~----~~~--~~v~~~~~~~lgry~~~~~~~ 534 (1049)
T 3m1i_C 468 HNINTLSWAIGSISGTMS-----EDTEKRFVVTVIKDLLD--LTVKKRGK----DNK--AVVASDIMYVVGQYPRFLKAH 534 (1049)
T ss_dssp HHHHHHHHHHHHTTTSSC-----HHHHHHHHHHHHHHHHH--HTTSSCSH----HHH--HHHHHHHHHHHHHCHHHHHHC
T ss_pred HHHHHHHHHHHHHhcccC-----chhhHHHHHHHHHHHHH--HHhhhccc----cch--HHHHHHHHHHHHHHHHHHHhH
Confidence 889999999999986532 111233 5688888876 57776531 122 77763 444335553
Q ss_pred c-chhhHHHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcc--cccchhhhhHHHHHHHHHHhhCCCCCCccHHHH
Q psy9800 88 S-SSKTAKYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTL--VTADVLAPLAADLYKNLLVIFTRPGSEENEYAM 164 (486)
Q Consensus 88 l-~~~~llp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~--~~~~~l~p~~~~lL~~Lf~li~~~~~~eNeylm 164 (486)
- -...+++.+...|.+++..|+++||.|+.|+...-. +.+ ..+.+++|++++++++|+.++...+..++..+|
T Consensus 535 ~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~----~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~ 610 (1049)
T 3m1i_C 535 WNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCK----YHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFY 610 (1049)
T ss_dssp HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHT----HHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH----HHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 1 122238888889999999999999999999987321 111 235666799999999999999876666788999
Q ss_pred HHHHHHHHHhh--hhhhchHHHHHH----HHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHhcCchHHHHHHHHhhHH
Q psy9800 165 KCIMRSMSTLQ--DKVVPYLSDLLF----QLTQRLAAAAKNPSKPNYNHFLFEAITLAIRIVCKQNPEAVATFEQALFPI 238 (486)
Q Consensus 165 k~imRii~~~~--e~i~p~~~~l~~----~L~~il~~v~kNpsnp~f~hylFEsi~~lir~~~~~~p~~~~~~E~~L~P~ 238 (486)
+|+++++.... +...++...+++ ++..++.+..+||+++. -+|++..++.. ++....+...+++.+.|.
T Consensus 611 eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~----d~~~~~~l~~~-l~~~~~~~~~l~~~f~p~ 685 (1049)
T 3m1i_C 611 KACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLL----DSETVKIIANI-IKTNVAVCTSMGADFYPQ 685 (1049)
T ss_dssp HHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGG----SHHHHHHHHHH-HHHHHHHHHHHGGGGHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhc----CHHHHHHHHHH-HHHHHHHHHHhhHHHHHH
Confidence 99999998876 457777777544 45556666778888764 35555555444 334445667778888888
Q ss_pred HHHHhccccchhhhhHHHHHHHHHhhCCC-CCCChhHHHhhhhhcCccccCCCCCccchhHHHHHhhcccCc--ccccc-
Q psy9800 239 FQVIIQQDTLEFLPYTFQILSLLLEFRPR-GSISAPYLELYPFLLSPVLWSRPGNIHPLVRLLRAFITKSEP--SQFSA- 314 (486)
Q Consensus 239 ~~~IL~~dv~EF~pYvfQIls~lle~~~~-~~is~~y~~L~~~Ll~p~lWe~~gnip~lvrlL~ayi~k~~~--~~~~~- 314 (486)
+..|+. |. + ++||.++.+++.... .+.+ .+.+|..|..+++.|.+.+++++|+.+ .. +.+..
T Consensus 686 ~~~i~~-~~---l-~~~~~~~~~~~~~~~~~g~~--------~~~~p~~~~~~~~~~~l~~ll~~~~~~-~~~l~~~~~~ 751 (1049)
T 3m1i_C 686 LGHIYY-NM---L-QLYRAVSSMISAQVAAEGLI--------ATKTPKVRGLRTIKKEILKLVETYISK-ARNLDDVVKV 751 (1049)
T ss_dssp HHHHHH-HH---H-HHHHHHHHHHHHHHHHHCGG--------GGGSHHHHHHHHHHHHHHHHHHHHHHH-CSCHHHHHHH
T ss_pred HHHHHH-HH---H-HHHHHHHHHHHHHHHccCch--------hhhhHHHHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHH
Confidence 888886 33 4 778887777654321 0111 156778888889999999999999988 53 11111
Q ss_pred --ccchhHHHHHHHHHHHH-H-------------------------HHHHHHHHh-----hc-CCcchhHHHHHHHHHHH
Q psy9800 315 --TLKLNNVLGVFQKLIAS-K-------------------------IFVLLFQRL-----SS-SKTAKYSKGLVTFLMFY 360 (486)
Q Consensus 315 --~~~l~~ilgifqkli~s-k-------------------------I~~lll~RL-----q~-~kt~k~~k~~v~f~~~~ 360 (486)
++.++.+++.|++...+ + ++..++++. ++ ...++..+++..++.-+
T Consensus 752 ~~~~~l~~ll~~~~~~~~~~~~~~~l~l~~~ii~~~~~~~~~~l~~i~~~l~~~~~~~i~~~~~~~pd~~~~~f~ll~~i 831 (1049)
T 3m1i_C 752 LVEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVI 831 (1049)
T ss_dssp THHHHHHHHHHHHHHSCGGGCCTHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcchhhCHHHHHHHHHHHHHH
Confidence 35577788888764333 0 777777774 11 23456666666666554
Q ss_pred HH
Q psy9800 361 VI 362 (486)
Q Consensus 361 ~~ 362 (486)
+-
T Consensus 832 ~~ 833 (1049)
T 3m1i_C 832 NE 833 (1049)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 3
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.46 E-value=2.6e-12 Score=145.88 Aligned_cols=256 Identities=13% Similarity=0.162 Sum_probs=186.7
Q ss_pred hhhhHHHHHHHHHhhcccccccccccccccccHHHHHHHhhccccCCCCCCCCCccccchhhh---hhHhhccCCcc--h
Q psy9800 16 KYKDTAIYLVTSLASQGSTVKHGTTKSSTLVNLEDFAQQHIFPELNKPDELCPNELLSPHLKQ---IFVLLFQRLSS--S 90 (486)
Q Consensus 16 r~KD~Ai~Lv~sla~~~~t~~~Gvt~~n~lv~v~~ff~~~V~PeL~~~~~~~~~~~~~piLka---Ky~~~FRn~l~--~ 90 (486)
+.+|+|+|.++++|...... . ++ .+...+. +++.+.+++ |.+|. .++-.|+..+. .
T Consensus 464 ~~~eaal~al~~i~~~~~~~-----~-~~--~l~~l~~--~l~~l~~~~---------~~vr~~~~~~l~~~~~~l~~~~ 524 (963)
T 2x19_B 464 QHTEALLYGFQSIAETIDVN-----Y-SD--VVPGLIG--LIPRISISN---------VQLADTVMFTIGALSEWLADHP 524 (963)
T ss_dssp HHHHHHHHHHHHHTTSCCSS-----C-CS--HHHHHHH--HGGGSCCCS---------HHHHHHHHHHHHHTHHHHHHCH
T ss_pred HHHHHHHHHHHHHHhhcCch-----h-hH--HHHHHHH--HHHhCCCCc---------HHHHHHHHHHHHHHHHHHHhCH
Confidence 78999999999999765311 1 11 2333333 566665432 67776 44444444332 2
Q ss_pred hhH---HHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCC--CCccHHHHH
Q psy9800 91 KTA---KYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPG--SEENEYAMK 165 (486)
Q Consensus 91 ~~l---lp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~--~~eNeylmk 165 (486)
+.+ ++.+.++|.+ ..|+.+||.|+.++.. + . +..+.|+++++++.|+.++..+. ..+.+++++
T Consensus 525 ~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~--~-~-------~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~e 592 (963)
T 2x19_B 525 VMINSVLPLVLHALGN--PELSVSSVSTLKKICR--E-C-------KYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQ 592 (963)
T ss_dssp HHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHH--H-T-------GGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHH--H-H-------HHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 333 8999999866 7899999999999984 2 1 56688999999999999997633 346779999
Q ss_pred HHHHHHHHhh-hhhhchHHHHHHHHHHHHHHHhcCCCCCcchh---HHHHHHHHHHHHHHhc------------------
Q psy9800 166 CIMRSMSTLQ-DKVVPYLSDLLFQLTQRLAAAAKNPSKPNYNH---FLFEAITLAIRIVCKQ------------------ 223 (486)
Q Consensus 166 ~imRii~~~~-e~i~p~~~~l~~~L~~il~~v~kNpsnp~f~h---ylFEsi~~lir~~~~~------------------ 223 (486)
|+.+++.... ++..|+...+++.+.+.+..+++++.+|.+.+ +++|+++.+.|.+...
T Consensus 593 ai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (963)
T 2x19_B 593 ALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQ 672 (963)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCC
Confidence 9999998775 88999999999999999999999888887765 8899999999984321
Q ss_pred CchHHHHHHHHhhHHHHHHhccccchhhhhHHHHHHHHHhhCCCCCCChhHHHhhhhhcCccccCCCC-CccchhHHHHH
Q psy9800 224 NPEAVATFEQALFPIFQVIIQQDTLEFLPYTFQILSLLLEFRPRGSISAPYLELYPFLLSPVLWSRPG-NIHPLVRLLRA 302 (486)
Q Consensus 224 ~p~~~~~~E~~L~P~~~~IL~~dv~EF~pYvfQIls~lle~~~~~~is~~y~~L~~~Ll~p~lWe~~g-nip~lvrlL~a 302 (486)
.++....+.+.++|++..+|+.+..+. ++.|....++..... .+++.+..++|+++.+-+|...+ +.+...+++.+
T Consensus 673 ~~~~~~~~~~~~~~~~~~~l~~~~~~~--~v~e~~~~~l~~~~~-~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~l~~~ 749 (963)
T 2x19_B 673 GPNPVVVVLQQVFQLIQKVLSKWLNDA--QVVEAVCAIFEKSVK-TLLDDFAPMVPQLCEMLGRMYSTIPQASALDLTRQ 749 (963)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHH-HSSSTTGGGHHHHHHHHHHHHHHSCCHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHHHhccCch--HHHHHHHHHHHHHHH-hhcccccccHHHHHHHHHHHHHcCCccHHHHHHHH
Confidence 234577889999999999999876543 455544444433221 24445566778887776776443 58899999999
Q ss_pred hhc
Q psy9800 303 FIT 305 (486)
Q Consensus 303 yi~ 305 (486)
++.
T Consensus 750 li~ 752 (963)
T 2x19_B 750 LVH 752 (963)
T ss_dssp HHH
T ss_pred HHH
Confidence 998
No 4
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.35 E-value=3.3e-11 Score=137.39 Aligned_cols=256 Identities=15% Similarity=0.141 Sum_probs=184.8
Q ss_pred hhhhHHHHHHHHHhhcccccccccccccccccHHHHHHHhhccccCCCCCCCCCccccchhhh---hhHhhccCCcc---
Q psy9800 16 KYKDTAIYLVTSLASQGSTVKHGTTKSSTLVNLEDFAQQHIFPELNKPDELCPNELLSPHLKQ---IFVLLFQRLSS--- 89 (486)
Q Consensus 16 r~KD~Ai~Lv~sla~~~~t~~~Gvt~~n~lv~v~~ff~~~V~PeL~~~~~~~~~~~~~piLka---Ky~~~FRn~l~--- 89 (486)
+.+|+|+|.++++|...... ....+..++. ++|+|.+.+ .+ |.+|. +.+..|++.+.
T Consensus 479 ~~~eaal~~l~~iae~~~~~--------~~~~l~~l~~--~l~~l~~~d-----~~--~~vr~~a~~~l~~~~~~l~~~~ 541 (971)
T 2x1g_F 479 TKLEACIYSFQSVAEHFGGE--------EKRQIPRLMR--VLAEIPYEK-----LN--VKLLGTALETMGSYCNWLMENP 541 (971)
T ss_dssp HHHHHHHHHHHHTTTC--------------CHHHHHHH--HHHHSCTTT-----SC--HHHHHHHHHHHHHTHHHHC---
T ss_pred HHHHHHHHHHHHHHhhcChh--------hhHHHHHHHH--HHHhcCccc-----cC--HHHHHHHHHHHHHHHHHHhcCH
Confidence 79999999999998765311 1135666766 889997532 12 88887 44444433322
Q ss_pred --hhhHHHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCC--CCccHHHHH
Q psy9800 90 --SKTAKYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPG--SEENEYAMK 165 (486)
Q Consensus 90 --~~~llp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~--~~eNeylmk 165 (486)
...++|.+.+.| + ..|+.+||.|++++.. + . +..+.|++++|++.|+++++.+. ..+++++|+
T Consensus 542 ~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~--~-~-------~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ 608 (971)
T 2x1g_F 542 AYIPPAINLLVRGL-N--SSMSAQATLGLKELCR--D-C-------QLQLKPYADPLLNACHASLNTGRMKNSDSVRLMF 608 (971)
T ss_dssp -CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHH--H-C-------HHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHH--H-H-------HHhccccHHHHHHHHHHHHcCCCCChHHHHHHHH
Confidence 233388888888 4 7899999999999983 2 1 67799999999999999998743 457789999
Q ss_pred HHHHHHHHhh-hhhhchHHHHHHHHHHHHHHHhcCCC-CC---cchhHHHHHHHHHHHHHHhcC----------chHHHH
Q psy9800 166 CIMRSMSTLQ-DKVVPYLSDLLFQLTQRLAAAAKNPS-KP---NYNHFLFEAITLAIRIVCKQN----------PEAVAT 230 (486)
Q Consensus 166 ~imRii~~~~-e~i~p~~~~l~~~L~~il~~v~kNps-np---~f~hylFEsi~~lir~~~~~~----------p~~~~~ 230 (486)
|+++++.... ++..|+...+++.+.+.+.++.+|+. ++ ...+-+.+.++.+++.. ... ++.+..
T Consensus 609 ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l-~~~~~~~~~~~~~~~~~~~ 687 (971)
T 2x1g_F 609 SIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSL-NTDVDEQATDQPIVQPVLL 687 (971)
T ss_dssp HHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHH-TC-------------CCHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhc-CCCcCcccccccCCCchHH
Confidence 9999998664 88899999999999999999998875 33 23355667777777763 221 345677
Q ss_pred HHHHhhHHHHHHhccc--cchhhhhHHHHHHHHHhhCCCCCCChhHHHhhhhhcCccccCCCCCccchhHHHHHhhcc
Q psy9800 231 FEQALFPIFQVIIQQD--TLEFLPYTFQILSLLLEFRPRGSISAPYLELYPFLLSPVLWSRPGNIHPLVRLLRAFITK 306 (486)
Q Consensus 231 ~E~~L~P~~~~IL~~d--v~EF~pYvfQIls~lle~~~~~~is~~y~~L~~~Ll~p~lWe~~gnip~lvrlL~ayi~k 306 (486)
+.+.++|.+..+++.. -.+++.+++.+++.+...... .+.|.++.+++.++. .+++. ..+..+.++...+.+
T Consensus 688 ~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~-~~~p~l~~~~~~l~~--~~~~~-~~~~~l~l~~~~i~~ 761 (971)
T 2x1g_F 688 VMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRS-SFQPMLQDLCLFIVA--SFQTR-CCAPTLEISKTAIVM 761 (971)
T ss_dssp HHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC---CTHHHHHHHHHHH--HCC---CCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhh-hccccHHHHHHHHHH--HHhcC-CchHHHHHHHHHHHH
Confidence 8899999999999764 347899999999998766543 577788899988886 55543 346678888888876
No 5
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.87 E-value=5.3e-07 Score=101.23 Aligned_cols=354 Identities=10% Similarity=0.105 Sum_probs=213.6
Q ss_pred HHHHHHHHhh---hhhhHHHHHHHHHhhcccccccccccccccccHHHHHHHhhccccCCCCCCCCCccccchhhh----
Q psy9800 6 MGTFGAYVEI---KYKDTAIYLVTSLASQGSTVKHGTTKSSTLVNLEDFAQQHIFPELNKPDELCPNELLSPHLKQ---- 78 (486)
Q Consensus 6 t~i~~~yi~~---r~KD~Ai~Lv~sla~~~~t~~~Gvt~~n~lv~v~~ff~~~V~PeL~~~~~~~~~~~~~piLka---- 78 (486)
...+.+.++. +.|.+|+..+++++.... . .+. +..+-+...+++-+.+++ |.+|.
T Consensus 361 ~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~---~---~~~---~~l~~~l~~l~~~l~d~~---------~~Vr~~a~~ 422 (852)
T 4fdd_A 361 LPLLKELLFHHEWVVKESGILVLGAIAEGCM---Q---GMI---PYLPELIPHLIQCLSDKK---------ALVRSITCW 422 (852)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHTTTTTH---H---HHG---GGHHHHHHHHHHHTTCSS---------HHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcch---H---HHH---HHHHHHHHHHHHHcCCCC---------HHHHHHHHH
Confidence 3344444443 889999999999986442 1 111 122333456666676543 55555
Q ss_pred ---hhHhhccC---CcchhhHHHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhh
Q psy9800 79 ---IFVLLFQR---LSSSKTAKYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIF 152 (486)
Q Consensus 79 ---Ky~~~FRn---~l~~~~llp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li 152 (486)
++.-.+.. ..-...++|.+.+.|.+++..|+..|+.|+..+...- ...+.|+++.++..|++++
T Consensus 423 ~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~----------~~~l~~~l~~ll~~L~~~l 492 (852)
T 4fdd_A 423 TLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEA----------CTELVPYLAYILDTLVFAF 492 (852)
T ss_dssp HHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH----------GGGGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh----------hHhhHhHHHHHHHHHHHHH
Confidence 33322221 2223455999999999999999999999999988643 2347888899998888887
Q ss_pred CCCC---------------------------------------------CCccHHHHHHHHHHHHHhhhhhhchHHHHHH
Q psy9800 153 TRPG---------------------------------------------SEENEYAMKCIMRSMSTLQDKVVPYLSDLLF 187 (486)
Q Consensus 153 ~~~~---------------------------------------------~~eNeylmk~imRii~~~~e~i~p~~~~l~~ 187 (486)
+... ..+-..+++|+.++...+++...||...+.+
T Consensus 493 ~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~~~~~~l~~i~~~~g~~~~~~~~~i~~ 572 (852)
T 4fdd_A 493 SKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQ 572 (852)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHGGGGHHHHHHHHH
T ss_pred HHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 5321 0111246788888999999999999999888
Q ss_pred HHHHHHHHH-------hcCC-----CCCcchhHHHHHHHHHHHHHHhcCchHHHHH-HHHhhHHHHHHhccccchhhhhH
Q psy9800 188 QLTQRLAAA-------AKNP-----SKPNYNHFLFEAITLAIRIVCKQNPEAVATF-EQALFPIFQVIIQQDTLEFLPYT 254 (486)
Q Consensus 188 ~L~~il~~v-------~kNp-----snp~f~hylFEsi~~lir~~~~~~p~~~~~~-E~~L~P~~~~IL~~dv~EF~pYv 254 (486)
.+.+.+... ..|| .+..|---.+++++.+++. +. .+..+-+ ++.++|.+...++.+..+....+
T Consensus 573 ~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~-l~--~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a 649 (852)
T 4fdd_A 573 RCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEG-LG--GNIEQLVARSNILTLMYQCMQDKMPEVRQSS 649 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHH-HG--GGGHHHHHTCCHHHHHHHHTTCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHH-Hh--HhHHHHhcCCcHHHHHHHHhCCCChhHHHHH
Confidence 877776653 2344 1334444556788888877 33 2222222 24678988888988777888888
Q ss_pred HHHHHHHHhhCCCCCCChhHHHhhhhhcCccccCCCCCc---cchhHHHHHhhcccCccccccccchhHHHHHHHHHHHH
Q psy9800 255 FQILSLLLEFRPRGSISAPYLELYPFLLSPVLWSRPGNI---HPLVRLLRAFITKSEPSQFSATLKLNNVLGVFQKLIAS 331 (486)
Q Consensus 255 fQIls~lle~~~~~~is~~y~~L~~~Ll~p~lWe~~gni---p~lvrlL~ayi~k~~~~~~~~~~~l~~ilgifqkli~s 331 (486)
+..++-+....+. .+.+.+..++|.++.. + +. ++. -..+..+..+..+ ..+.+. .++..
T Consensus 650 ~~~l~~l~~~~~~-~~~~~l~~~lp~l~~~-l-~~-~~~~v~~~a~~alg~i~~~-~~~~~~--p~~~~----------- 711 (852)
T 4fdd_A 650 FALLGDLTKACFQ-HVKPCIADFMPILGTN-L-NP-EFISVCNNATWAIGEISIQ-MGIEMQ--PYIPM----------- 711 (852)
T ss_dssp HHHHHHHHHHCGG-GTGGGHHHHHHHHHHT-C-CT-TSHHHHHHHHHHHHHHHHH-HGGGGG--GGTHH-----------
T ss_pred HHHHHHHHHHhhH-HHHHHHHHHHHHHHHH-c-Cc-cchHHHHHHHHHHHHHHHH-hhHhHH--HHHHH-----------
Confidence 8888888765543 4555555565555542 1 11 110 0122233333333 211111 12222
Q ss_pred HHHHHHHHHhhcCCcch-hHHHHHHHHHHHHHhhChHHHHHHHHhhhcchhHHHHHHHhhcccccccCcchhhhHHHHHH
Q psy9800 332 KIFVLLFQRLSSSKTAK-YSKGLVTFLMFYVINMGATSLIQLIDSIQGSLFSMVAEKLILADLQKVSGAVNRKIAAFGLA 410 (486)
Q Consensus 332 kI~~lll~RLq~~kt~k-~~k~~v~f~~~~~~~yg~~~li~~ld~iQ~glf~~i~~~~~lp~~~~~~~~~dRKi~~vgl~ 410 (486)
++..++..|++....+ .....+..++-++. .+|+.+-..++.+ ...|+..+++.....+|..+.-|++
T Consensus 712 -il~~L~~~l~~~~~~~~~~~~a~~~igrl~~-~~~~~~~~~l~~~---------~~~~~~~l~~~~d~~e~~~a~~~l~ 780 (852)
T 4fdd_A 712 -VLHQLVEIINRPNTPKTLLENTAITIGRLGY-VCPQEVAPMLQQF---------IRPWCTSLRNIRDNEEKDSAFRGIC 780 (852)
T ss_dssp -HHHHHHHHHTCSSCCHHHHHHHHHHHHHHHH-HCHHHHGGGHHHH---------HHHHHHHHHTSCSSHHHHHHHHHHH
T ss_pred -HHHHHHHHhCCCCCCchHHHHHHHHHHHHHH-hCHHHhCccHHHH---------HHHHHHHhccccccHHHHHHHHHHH
Confidence 5555556665543333 22233344444433 3666554333332 2356666667767789999999999
Q ss_pred HHhhhhccc
Q psy9800 411 KLLTEAKEV 419 (486)
Q Consensus 411 ~lL~~~~~~ 419 (486)
.++..+|..
T Consensus 781 ~li~~~p~~ 789 (852)
T 4fdd_A 781 TMISVNPSG 789 (852)
T ss_dssp HHHHHCGGG
T ss_pred HHHHhChHh
Confidence 999988864
No 6
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.37 E-value=2.3e-05 Score=86.79 Aligned_cols=239 Identities=14% Similarity=0.126 Sum_probs=154.2
Q ss_pred hhhhHHHHHHHHHhhcccccccccccccccccHHHHHHHhhccccCCCCCCCCCccccchhhh-------hhHhhccCCc
Q psy9800 16 KYKDTAIYLVTSLASQGSTVKHGTTKSSTLVNLEDFAQQHIFPELNKPDELCPNELLSPHLKQ-------IFVLLFQRLS 88 (486)
Q Consensus 16 r~KD~Ai~Lv~sla~~~~t~~~Gvt~~n~lv~v~~ff~~~V~PeL~~~~~~~~~~~~~piLka-------Ky~~~FRn~l 88 (486)
+.|++|++.+++++.... .. ... +..+-+...+++.+..++ |.+|. ++.-.+....
T Consensus 384 ~~r~~a~~~l~~i~~~~~--~~---~~~---~~l~~il~~l~~~l~d~~---------~~vr~~a~~~l~~l~~~~~~~~ 446 (861)
T 2bpt_A 384 RNREAAVMAFGSIMDGPD--KV---QRT---YYVHQALPSILNLMNDQS---------LQVKETTAWCIGRIADSVAESI 446 (861)
T ss_dssp HHHHHHHHHHHHTSSSSC--HH---HHH---HHHHHHHHHHHHGGGCSC---------HHHHHHHHHHHHHHHHHHGGGS
T ss_pred hHHHHHHHHHHHHHcCCC--HH---HHH---HHHHHHHHHHHHHcCCCc---------HHHHHHHHHHHHHHHHHhhhhc
Confidence 889999999999983211 01 111 111122334444554433 55654 3443333222
Q ss_pred ----chhhHHHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCcc--HH
Q psy9800 89 ----SSKTAKYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEEN--EY 162 (486)
Q Consensus 89 ----~~~~llp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~eN--ey 162 (486)
..+.++|.+.+.|.++ ..|+.+|+.++..+...-.+ ..+..+.|+++.++..|+++++..+..++ ..
T Consensus 447 ~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~------~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~ 519 (861)
T 2bpt_A 447 DPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAE------ATPSPIYNFYPALVDGLIGAANRIDNEFNARAS 519 (861)
T ss_dssp CTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSS------SSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHH
T ss_pred CCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhccc------ccchhhHHHHHHHHHHHHHHHhCcCcchHHHHH
Confidence 2445599999999886 88999999999998765421 12567889999999999999986332222 36
Q ss_pred HHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHHh-------cCCC---CCcchhHHHHHHHHHHHHHHhcCchHHHHHH
Q psy9800 163 AMKCIMRSMSTLQDKVVPYLSDLLFQLTQRLAAAA-------KNPS---KPNYNHFLFEAITLAIRIVCKQNPEAVATFE 232 (486)
Q Consensus 163 lmk~imRii~~~~e~i~p~~~~l~~~L~~il~~v~-------kNps---np~f~hylFEsi~~lir~~~~~~p~~~~~~E 232 (486)
.++++..++...++++.|+...+++.+.+.+.... ++++ .+.--..++++++.+++. +.. .+..+-
T Consensus 520 a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~---~~~~~~ 595 (861)
T 2bpt_A 520 AFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRK-SPS---SVEPVA 595 (861)
T ss_dssp HHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHH-CGG---GTGGGH
T ss_pred HHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHH-hhh---hhHHHH
Confidence 78899999999999999999888888888777541 1111 111225678888888876 322 222334
Q ss_pred HHhhHHHHHHhccccc-hhhhhHHHHHHHHHhhCCCCCCChhHHHhhhhhcC
Q psy9800 233 QALFPIFQVIIQQDTL-EFLPYTFQILSLLLEFRPRGSISAPYLELYPFLLS 283 (486)
Q Consensus 233 ~~L~P~~~~IL~~dv~-EF~pYvfQIls~lle~~~~~~is~~y~~L~~~Ll~ 283 (486)
+.++|.+..+++..-. +.-..++..++.+.+.... ...+.+..++|.|+.
T Consensus 596 ~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~-~~~~~l~~i~~~l~~ 646 (861)
T 2bpt_A 596 DMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGK-GFEKYLETFSPYLLK 646 (861)
T ss_dssp HHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGG-GGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHH
Confidence 4678888888877655 5667777778877765443 355556666666665
No 7
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.34 E-value=2.6e-05 Score=86.51 Aligned_cols=218 Identities=10% Similarity=0.043 Sum_probs=130.9
Q ss_pred hHHHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCccHHHHHHHHHHH
Q psy9800 92 TAKYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEENEYAMKCIMRSM 171 (486)
Q Consensus 92 ~llp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~eNeylmk~imRii 171 (486)
+++|.+.+.|.|++..|+..|+.|+.++.....+ ..+..|+++.++..|++.++.+ ..--+...+++++++
T Consensus 408 ~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~--------~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~ 478 (876)
T 1qgr_A 408 QAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE--------AAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLA 478 (876)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGG--------GTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCch--------hcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHH
Confidence 3499999999999999999999999999875431 1124688999999999999652 111235778888888
Q ss_pred HHhh--------------hhhhchHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHhcCchHHHHHHHHhhH
Q psy9800 172 STLQ--------------DKVVPYLSDLLFQLTQRLAAAAKNPSKPNYNHFLFEAITLAIRIVCKQNPEAVATFEQALFP 237 (486)
Q Consensus 172 ~~~~--------------e~i~p~~~~l~~~L~~il~~v~kNpsnp~f~hylFEsi~~lir~~~~~~p~~~~~~E~~L~P 237 (486)
..++ +.+.||...+++.|...+.... .+++.....++|+++.+++. +.. + ...+.+.++|
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~--~~~~~~r~~~~~~l~~l~~~-~~~--~-~~~~~~~l~~ 552 (876)
T 1qgr_A 479 EAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPD--GHQNNLRSSAYESLMEIVKN-SAK--D-CYPAVQKTTL 552 (876)
T ss_dssp HHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCS--SCSTTHHHHHHHHHHHHHHT-CCS--T-THHHHHHHHH
T ss_pred HHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcC--cchhhHHHHHHHHHHHHHHH-Cch--h-hHHHHHHHHH
Confidence 8776 3488999888888776654211 12334457899999999997 322 2 2335556666
Q ss_pred HHHHHhccc---------c------chhhhhHHHHHHHHHhhCC-CCCCChhHHHhhhhhcCccccCCC-C--C-ccchh
Q psy9800 238 IFQVIIQQD---------T------LEFLPYTFQILSLLLEFRP-RGSISAPYLELYPFLLSPVLWSRP-G--N-IHPLV 297 (486)
Q Consensus 238 ~~~~IL~~d---------v------~EF~pYvfQIls~lle~~~-~~~is~~y~~L~~~Ll~p~lWe~~-g--n-ip~lv 297 (486)
.+...++.. . .+...+++..++.+....+ . .+.+....+++.++. .++.. | . -....
T Consensus 553 ~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~~~~~l~~~l~~--~l~~~~~~~~v~~~a~ 629 (876)
T 1qgr_A 553 VIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQ-DALQISDVVMASLLR--MFQSTAGSGGVQEDAL 629 (876)
T ss_dssp HHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHH-HHHTTHHHHHHHHHH--HC-----CCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChh-hhhHHHHHHHHHHHH--HHHhccCCCCccHHHH
Confidence 666555431 0 2233455666666654332 1 233334455555544 33322 1 1 12345
Q ss_pred HHHHHhhcccCccccccccchhHHHHHHHHHHH
Q psy9800 298 RLLRAFITKSEPSQFSATLKLNNVLGVFQKLIA 330 (486)
Q Consensus 298 rlL~ayi~k~~~~~~~~~~~l~~ilgifqkli~ 330 (486)
+++.+++.. ....+. .++..++..+.+++.
T Consensus 630 ~~l~~l~~~-~~~~~~--~~~~~~~~~l~~~l~ 659 (876)
T 1qgr_A 630 MAVSTLVEV-LGGEFL--KYMEAFKPFLGIGLK 659 (876)
T ss_dssp HHHHHHHHH-HGGGGG--GGHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHhhHH--HHHHHHHHHHHHHHc
Confidence 566666655 333332 345555555444443
No 8
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=97.79 E-value=0.00028 Score=78.23 Aligned_cols=273 Identities=12% Similarity=0.125 Sum_probs=145.5
Q ss_pred hhhhHHHHHHHHHhhcccccccccccccccccHHHH---HHHhhccccCCCCCCCCCccccchhhh-------hhHhhcc
Q psy9800 16 KYKDTAIYLVTSLASQGSTVKHGTTKSSTLVNLEDF---AQQHIFPELNKPDELCPNELLSPHLKQ-------IFVLLFQ 85 (486)
Q Consensus 16 r~KD~Ai~Lv~sla~~~~t~~~Gvt~~n~lv~v~~f---f~~~V~PeL~~~~~~~~~~~~~piLka-------Ky~~~FR 85 (486)
+.+++|++.+++++..... . .+..+ +...+++-|..++ +.+|. ++.-.+.
T Consensus 381 ~~r~~a~~~l~~i~~~~~~------~-----~~~~~~~~~l~~l~~~l~d~~---------~~vr~~a~~~l~~~~~~~~ 440 (876)
T 1qgr_A 381 RYRDAAVMAFGCILEGPEP------S-----QLKPLVIQAMPTLIELMKDPS---------VVVRDTAAWTVGRICELLP 440 (876)
T ss_dssp HHHHHHHHHHHHTSSSSCH------H-----HHHHHHHHHHHHHHHHHTCSS---------HHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHHHHcCCCH------H-----HHHHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHHHHhCc
Confidence 7899999999998853210 0 12222 2233444454433 55554 5554444
Q ss_pred CC----cchhhHHHHHHhhccCCCCcHHHHHHHHHHHHHcccCCC--CCCc--ccccchhhhhHHHHHHHHHHhhCCCCC
Q psy9800 86 RL----SSSKTAKYSKVSHLESAHPVVHSYASHAIDRVLVMRSPN--GQGT--LVTADVLAPLAADLYKNLLVIFTRPGS 157 (486)
Q Consensus 86 n~----l~~~~llp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~--~~~~--~~~~~~l~p~~~~lL~~Lf~li~~~~~ 157 (486)
.. -..+.+++.+.+.|.++ ..|+..|+.|+.++...-... .+++ -.....+.|++++++..|++++...+.
T Consensus 441 ~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~ 519 (876)
T 1qgr_A 441 EAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDG 519 (876)
T ss_dssp GGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSS
T ss_pred hhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCc
Confidence 32 22345599999999885 778999999999998653200 0000 012345789999999999999865321
Q ss_pred Cc-c----------------------------------------------------------HHHHHHHHHHHHHhh-hh
Q psy9800 158 EE-N----------------------------------------------------------EYAMKCIMRSMSTLQ-DK 177 (486)
Q Consensus 158 ~e-N----------------------------------------------------------eylmk~imRii~~~~-e~ 177 (486)
.+ + +++++|+..++..++ ++
T Consensus 520 ~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~ 599 (876)
T 1qgr_A 520 HQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQD 599 (876)
T ss_dssp CSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHH
T ss_pred chhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhh
Confidence 00 0 122333334444444 55
Q ss_pred hhchHHHHHHHHHHHHHHHhcCCCC-CcchhHHHHHHHHHHHHHHhcCchHHHHHHHHhhHHHHHHhccc-cchhhhhHH
Q psy9800 178 VVPYLSDLLFQLTQRLAAAAKNPSK-PNYNHFLFEAITLAIRIVCKQNPEAVATFEQALFPIFQVIIQQD-TLEFLPYTF 255 (486)
Q Consensus 178 i~p~~~~l~~~L~~il~~v~kNpsn-p~f~hylFEsi~~lir~~~~~~p~~~~~~E~~L~P~~~~IL~~d-v~EF~pYvf 255 (486)
+.|+...+++.|...+. ++++ +..---.+++++.+.+. ++.. +..+=+.++|.+...|+.. ..+.--.++
T Consensus 600 ~~~~~~~l~~~l~~~l~----~~~~~~~v~~~a~~~l~~l~~~-~~~~---~~~~~~~~~~~l~~~l~~~~~~~vr~~a~ 671 (876)
T 1qgr_A 600 ALQISDVVMASLLRMFQ----STAGSGGVQEDALMAVSTLVEV-LGGE---FLKYMEAFKPFLGIGLKNYAEYQVCLAAV 671 (876)
T ss_dssp HHTTHHHHHHHHHHHC---------CCHHHHHHHHHHHHHHHH-HGGG---GGGGHHHHHHHHHHHHHHCTTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHH----hccCCCCccHHHHHHHHHHHHH-HHhh---HHHHHHHHHHHHHHHHcCcchHHHHHHHH
Confidence 55665555555544433 2221 22223355555555554 2211 1222234667777777654 444555677
Q ss_pred HHHHHHHhhCCCCCCChhHHHhhhhhcCccccCCC----CCccchhHHHHHhhcccCccccccccchhHHHH
Q psy9800 256 QILSLLLEFRPRGSISAPYLELYPFLLSPVLWSRP----GNIHPLVRLLRAFITKSEPSQFSATLKLNNVLG 323 (486)
Q Consensus 256 QIls~lle~~~~~~is~~y~~L~~~Ll~p~lWe~~----gnip~lvrlL~ayi~k~~~~~~~~~~~l~~ilg 323 (486)
+.++.+...... .+.+....+++.++. .|... .--+.....+.....+ .++.+. .++..++.
T Consensus 672 ~~l~~l~~~~~~-~~~~~~~~i~~~l~~--~l~~~~~~~~~~~~~~~~l~~i~~~-~g~~~~--~~l~~~~~ 737 (876)
T 1qgr_A 672 GLVGDLCRALQS-NIIPFCDEVMQLLLE--NLGNENVHRSVKPQILSVFGDIALA-IGGEFK--KYLEVVLN 737 (876)
T ss_dssp HHHHHHHHHHGG-GGHHHHHHHHHHHHH--HHTCTTSCGGGHHHHHHHHHHHHHH-HGGGGG--GGHHHHHH
T ss_pred HHHHHHHHHHHH-hhhhhHHHHHHHHHH--HhCCccccHHhhHHHHHHHHHHHHH-hchhHH--HHHHHHHH
Confidence 777777655432 466666777777766 55431 1224455566666655 333333 24444443
No 9
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=97.52 E-value=0.0033 Score=70.32 Aligned_cols=157 Identities=15% Similarity=0.133 Sum_probs=105.9
Q ss_pred hhHHHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCccHHHHHHHHHH
Q psy9800 91 KTAKYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEENEYAMKCIMRS 170 (486)
Q Consensus 91 ~~llp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~eNeylmk~imRi 170 (486)
+.++|.+.+.|.|++..|+.-|+.|+.++-..-. .....++...++..|++.+..+...-=+...+++..+
T Consensus 399 ~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~---------~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l 469 (852)
T 4fdd_A 399 PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVV---------SQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATL 469 (852)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHH---------HSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc---------cchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 3459999999999999999999999998876432 2335678888999999888652211123566777777
Q ss_pred HHHhhhhhhchHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHhcCchHHHHHHHHhhHHHHHHh---cccc
Q psy9800 171 MSTLQDKVVPYLSDLLFQLTQRLAAAAKNPSKPNYNHFLFEAITLAIRIVCKQNPEAVATFEQALFPIFQVII---QQDT 247 (486)
Q Consensus 171 i~~~~e~i~p~~~~l~~~L~~il~~v~kNpsnp~f~hylFEsi~~lir~~~~~~p~~~~~~E~~L~P~~~~IL---~~dv 247 (486)
....++.+.||...+++.|...+... +..-...++++++.+...+ ...-. -..+-+.++|.+..++ ..+-
T Consensus 470 ~~~~~~~l~~~l~~ll~~L~~~l~~~-----~~~~~~~~~~ai~~l~~~~-~~~~~-~~~~~~~l~p~l~~~~~~l~d~~ 542 (852)
T 4fdd_A 470 EEEACTELVPYLAYILDTLVFAFSKY-----QHKNLLILYDAIGTLADSV-GHHLN-KPEYIQMLMPPLIQKWNMLKDED 542 (852)
T ss_dssp HHHHGGGGGGGHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHH-GGGGC-CHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHhhHhhHhHHHHHHHHHHHHHHHh-----ChHHHHHHHHHHHHHHHHh-hhhhc-cHHHHHHHHHHHHHHHHhccccc
Confidence 77788889999999999988887531 1222245789999998874 22111 1234456778777543 2232
Q ss_pred chhhhhHHHHHHHHHhh
Q psy9800 248 LEFLPYTFQILSLLLEF 264 (486)
Q Consensus 248 ~EF~pYvfQIls~lle~ 264 (486)
.+.. .+++.++.+...
T Consensus 543 ~~~~-~~~~~l~~i~~~ 558 (852)
T 4fdd_A 543 KDLF-PLLECLSSVATA 558 (852)
T ss_dssp TTHH-HHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHH
Confidence 3333 467777766544
No 10
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.42 E-value=0.048 Score=62.75 Aligned_cols=361 Identities=11% Similarity=0.069 Sum_probs=188.7
Q ss_pred hhhhHHHHHHHHHhhcccccccccccccc-cccHHHHHHHhhccccCCCCCCCCCccccchhhh-------hhHhhcc-C
Q psy9800 16 KYKDTAIYLVTSLASQGSTVKHGTTKSST-LVNLEDFAQQHIFPELNKPDELCPNELLSPHLKQ-------IFVLLFQ-R 86 (486)
Q Consensus 16 r~KD~Ai~Lv~sla~~~~t~~~Gvt~~n~-lv~v~~ff~~~V~PeL~~~~~~~~~~~~~piLka-------Ky~~~FR-n 86 (486)
+..++|+|+++++|........++...++ +-.+.+|+.+-+-....+ ..+ |.+|- +|---|- +
T Consensus 458 ~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~------~~h--p~V~~~~~~~l~rys~~~~~~ 529 (980)
T 3ibv_A 458 QLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCR------HPH--PLVQLLYMEILVRYASFFDYE 529 (980)
T ss_dssp HHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTT------CCC--HHHHHHHHHHHHHTGGGGGTC
T ss_pred HHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCC------CCC--HHHHHHHHHHHHHHHHHHhcC
Confidence 88999999999999754322222212222 225667776655443321 122 76665 5553342 2
Q ss_pred CcchhhHHHHHHh--hccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCC---CCC-Cc-
Q psy9800 87 LSSSKTAKYSKVS--HLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTR---PGS-EE- 159 (486)
Q Consensus 87 ~l~~~~llp~l~~--~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~---~~~-~e- 159 (486)
.--...+++.+.. -+.+++.-|+.-||.++.|+...- +..+.|+++++++.+-.++.. +.. .+
T Consensus 530 ~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~----------~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~ 599 (980)
T 3ibv_A 530 SAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSI----------KKQVVNYTESSLAMLGDLLNISVSPVTDMDA 599 (980)
T ss_dssp CTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHT----------TTTCSSSHHHHHHHTTGGGCCCCCCCCC--C
T ss_pred chhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHh----------hHHhhhHHHHHHHHHHHhhcCcCCCCCcccc
Confidence 2222233677777 777888999999999999998732 456789999999999888753 111 11
Q ss_pred ---------------c-HHHHHHHHHHHHHhh---hhhhchHHHHHHHHHHHHHHHhcCCCCC---c-chhHHHHHHHHH
Q psy9800 160 ---------------N-EYAMKCIMRSMSTLQ---DKVVPYLSDLLFQLTQRLAAAAKNPSKP---N-YNHFLFEAITLA 216 (486)
Q Consensus 160 ---------------N-eylmk~imRii~~~~---e~i~p~~~~l~~~L~~il~~v~kNpsnp---~-f~hylFEsi~~l 216 (486)
| =|++.++=.++.... |+...+...+++-|.+.+.....+..++ . --|-..-++|.+
T Consensus 600 ~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~l 679 (980)
T 3ibv_A 600 PVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAIGNF 679 (980)
T ss_dssp SSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHH
T ss_pred cccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHH
Confidence 1 179999999998754 3555667777777777776666443322 2 235667778888
Q ss_pred HHHHHhc-----CchHHHHHHHHhhHHHHHHhc--cccchhhhhHHHHHHHHHhhCCCCCCChhHHHhhhhhcCccccCC
Q psy9800 217 IRIVCKQ-----NPEAVATFEQALFPIFQVIIQ--QDTLEFLPYTFQILSLLLEFRPRGSISAPYLELYPFLLSPVLWSR 289 (486)
Q Consensus 217 ir~~~~~-----~p~~~~~~E~~L~P~~~~IL~--~dv~EF~pYvfQIls~lle~~~~~~is~~y~~L~~~Ll~p~lWe~ 289 (486)
.|. ... .| ....| ...++.+..+|+ ....+..+=+...+..++..-.. .+-|..-.+...+++ ..+.
T Consensus 680 akg-f~~~~~~~~p-~~~~f-~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~-~~~p~lp~~i~~ll~--~~~~ 753 (980)
T 3ibv_A 680 AKG-FPARGSEEVA-WLASF-NKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGP-DMLPKVPQLISILLN--SIDM 753 (980)
T ss_dssp HHT-SCSCC-CCCS-HHHHH-HHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHH-HHTTTHHHHHHHHHH--HCCT
T ss_pred hcc-CCcccCCCCc-HHHHH-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccH-hHHHHHHHHHHHHHh--cCCH
Confidence 775 211 22 22222 334455555565 22334455555666666544221 122222223333331 1111
Q ss_pred CCCccchhHHHHHhhcccCccccccccchhHHHHHHHHHHHHHHHHHHHHHhhcC--Ccc-----h-hHHHHHHHHHHHH
Q psy9800 290 PGNIHPLVRLLRAFITKSEPSQFSATLKLNNVLGVFQKLIASKIFVLLFQRLSSS--KTA-----K-YSKGLVTFLMFYV 361 (486)
Q Consensus 290 ~gnip~lvrlL~ayi~k~~~~~~~~~~~l~~ilgifqkli~skI~~lll~RLq~~--kt~-----k-~~k~~v~f~~~~~ 361 (486)
.-.....+++.-.+.+ -...+ -+ +++.++.- ++.-+|.-|+.. -|+ . ..|.+..|+..++
T Consensus 754 -~e~~~fL~l~~qli~~-f~~~~------~~---~l~~ll~~-l~~~if~~l~~~~~~td~~r~~~~l~r~~~~fl~~i~ 821 (980)
T 3ibv_A 754 -NELVDVLSFISQLIHI-YKDNM------ME---ITNRMLPT-LLMRIFSSLSAAPQGTDDAVKQNDLRKSYISFILQLL 821 (980)
T ss_dssp -TTHHHHHHHHHHHHHH-TTTTS------HH---HHHHHHHH-HHHHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHH-HHHHH------HH---HHHHHHHH-HHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 1233445555555555 22221 11 11211110 222233334421 111 1 3334444444333
Q ss_pred HhhChHHHHHHHHhhhcchhHHHHHHHhhcccccccCcchhhhHHHHHHHHhhhh
Q psy9800 362 INMGATSLIQLIDSIQGSLFSMVAEKLILADLQKVSGAVNRKIAAFGLAKLLTEA 416 (486)
Q Consensus 362 ~~yg~~~li~~ld~iQ~glf~~i~~~~~lp~~~~~~~~~dRKi~~vgl~~lL~~~ 416 (486)
.+-=++.++..-+ .+.|..++..+. .-...++.+.-+|+|+.-++++....
T Consensus 822 ~~~~~~v~~s~~n---~~~l~~~l~~l~-~~a~~~~d~~~~K~a~~~l~~~v~~~ 872 (980)
T 3ibv_A 822 NKGFGSILFTEEN---QVYFDPLINSIL-HFANLVGEPATQKSSIALVSKMVSLW 872 (980)
T ss_dssp HTTCTGGGGSHHH---HTTHHHHHHHHH-HHC-----CHHHHHHHHHHHHHHHC-
T ss_pred hCCchhhhcCCcc---hHHHHHHHHHHH-HHhccCCChHHHHHHHHHHHHHHHHH
Confidence 3221333333222 245566666543 33333567888999999999998763
No 11
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=97.10 E-value=0.017 Score=63.63 Aligned_cols=173 Identities=12% Similarity=0.080 Sum_probs=105.9
Q ss_pred HHHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHH
Q psy9800 93 AKYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEENEYAMKCIMRSMS 172 (486)
Q Consensus 93 llp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~eNeylmk~imRii~ 172 (486)
++|.+.+.+.|++..|+.-|+.++.++.....+. -.-.++++.++..|++.+..+ ..--....+++..++.
T Consensus 412 il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--------~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~ 482 (861)
T 2bpt_A 412 ALPSILNLMNDQSLQVKETTAWCIGRIADSVAES--------IDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVE 482 (861)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGG--------SCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhh--------cCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHH
Confidence 4888999999999999999999999998754210 011356777888888887542 1111234456666666
Q ss_pred Hhh----hhhhchHHHHHHHHHHHHHHHhcCCC-CCcchhHHHHHHHHHHHHHHhcCchHHHHHHHHhhHHHHHHhccc-
Q psy9800 173 TLQ----DKVVPYLSDLLFQLTQRLAAAAKNPS-KPNYNHFLFEAITLAIRIVCKQNPEAVATFEQALFPIFQVIIQQD- 246 (486)
Q Consensus 173 ~~~----e~i~p~~~~l~~~L~~il~~v~kNps-np~f~hylFEsi~~lir~~~~~~p~~~~~~E~~L~P~~~~IL~~d- 246 (486)
.++ +.+.||...+++.|...+ ++++ ++.--...+++++.+++. +. .+..+.+ +.++|.+...|.+.
T Consensus 483 ~~~~~~~~~l~~~~~~il~~L~~~l----~~~d~~~~vr~~a~~al~~l~~~-~~--~~~~~~~-~~l~~~l~~~l~~~~ 554 (861)
T 2bpt_A 483 QLAEATPSPIYNFYPALVDGLIGAA----NRIDNEFNARASAFSALTTMVEY-AT--DTVAETS-ASISTFVMDKLGQTM 554 (861)
T ss_dssp HHSSSSSCGGGGGHHHHHHHHHHHH----TCSCCGGGHHHHHHHHHHHHHHH-CC--GGGHHHH-HHHHHHHHHHHHHHT
T ss_pred hcccccchhhHHHHHHHHHHHHHHH----hCcCcchHHHHHHHHHHHHHHHH-cc--hhhHHHH-HHHHHHHHHHHHHHH
Confidence 554 567788888877766544 3332 354456789999999887 22 2222333 34556555555432
Q ss_pred --------------cchhhhhHHHHHHHHHhhCCCCCCChhHHHhhhhhcC
Q psy9800 247 --------------TLEFLPYTFQILSLLLEFRPRGSISAPYLELYPFLLS 283 (486)
Q Consensus 247 --------------v~EF~pYvfQIls~lle~~~~~~is~~y~~L~~~Ll~ 283 (486)
..+....+++.++.+.+..+. .+.+....+++.++.
T Consensus 555 ~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~l~~~l~~ 604 (861)
T 2bpt_A 555 SVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPS-SVEPVADMLMGLFFR 604 (861)
T ss_dssp TSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGG-GTGGGHHHHHHHHHH
T ss_pred hhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHH
Confidence 223344566777766655443 344555556655554
No 12
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=96.59 E-value=0.023 Score=65.33 Aligned_cols=137 Identities=15% Similarity=0.177 Sum_probs=89.1
Q ss_pred hHHHHHHhhcc-----CCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHH--hhCCCCCCccHHHH
Q psy9800 92 TAKYSKVSHLE-----SAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLV--IFTRPGSEENEYAM 164 (486)
Q Consensus 92 ~llp~l~~~L~-----~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~--li~~~~~~eNeylm 164 (486)
++++.+.+.+. +++..|+.-+..++.|.=.--..+ + .+++.+|+.++. .+..+...=-.-.-
T Consensus 490 ~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~-------~----~~l~~~L~~ll~~~gl~~~~~~V~~~a~ 558 (980)
T 3ibv_A 490 VLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYE-------S----AAIPALIEYFVGPRGIHNTNERVRPRAW 558 (980)
T ss_dssp HHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTC-------C----TTHHHHHHHHTSTTTTTCCCTTTHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcC-------c----hhHHHHHHHHhccccccCCChhHHHHHH
Confidence 45777777765 678889999999998874433211 2 356667777766 55443222224567
Q ss_pred HHHHHHHHHhhhhhhchHHHHHHHHHHHHHHHhcCCCCC---------------cch--hHHHHHHHHHHHHHHhcCch-
Q psy9800 165 KCIMRSMSTLQDKVVPYLSDLLFQLTQRLAAAAKNPSKP---------------NYN--HFLFEAITLAIRIVCKQNPE- 226 (486)
Q Consensus 165 k~imRii~~~~e~i~p~~~~l~~~L~~il~~v~kNpsnp---------------~f~--hylFEsi~~lir~~~~~~p~- 226 (486)
.++.|++...+..+.|++..+++++...+..-.. |.+. .|+ -|+||++|.++.. ....++
T Consensus 559 ~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~-~~~~~e~ 636 (980)
T 3ibv_A 559 YLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVS-PVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISS-GNLTPEE 636 (980)
T ss_dssp HHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCC-CCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHH-SCCCHHH
T ss_pred HHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCC-CCCcccccccchhhhcccCCchHHHHHHHHHHHHHhC-CCCCHHH
Confidence 7899999999999999999999998877653222 3221 133 8999999999987 322233
Q ss_pred HHHHHHHHhhHHHHH
Q psy9800 227 AVATFEQALFPIFQV 241 (486)
Q Consensus 227 ~~~~~E~~L~P~~~~ 241 (486)
...-++..+-|.++.
T Consensus 637 ~~~~l~~ll~pl~~~ 651 (980)
T 3ibv_A 637 QALYCDSLINALIGK 651 (980)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334445445454443
No 13
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=96.31 E-value=0.021 Score=55.06 Aligned_cols=128 Identities=14% Similarity=0.139 Sum_probs=97.1
Q ss_pred hhHhhcc-CCcch---hhHHHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCC
Q psy9800 79 IFVLLFQ-RLSSS---KTAKYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTR 154 (486)
Q Consensus 79 Ky~~~FR-n~l~~---~~llp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~ 154 (486)
.+.-.+| ..+.+ ..++|.+...+.++...|+..|..|++.+...-+ +....+++..+++.|+..++.
T Consensus 87 ~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~---------~~~~~~~l~~ll~~l~~~l~~ 157 (249)
T 2qk1_A 87 LICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYD---------PLASSGRNEDMLKDILEHMKH 157 (249)
T ss_dssp HHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSC---------TTCTTCTTHHHHHHHHHHTTC
T ss_pred HHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcc---------ccccCCcHHHHHHHHHHHHcC
Confidence 4445567 56652 2339999999999999999999999999988543 323334588899999999976
Q ss_pred CCCCccHHHHHHHHHHHHHhh---hhhhchH-HHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHH
Q psy9800 155 PGSEENEYAMKCIMRSMSTLQ---DKVVPYL-SDLLFQLTQRLAAAAKNPSKPNYNHFLFEAITLAIRIV 220 (486)
Q Consensus 155 ~~~~eNeylmk~imRii~~~~---e~i~p~~-~~l~~~L~~il~~v~kNpsnp~f~hylFEsi~~lir~~ 220 (486)
......+-.++++-|++...+ +.+.++. ..+++.|...+ +.+++.----.+|+++.+.+.+
T Consensus 158 k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l-----~D~~~~VR~aA~~~l~~i~~~v 222 (249)
T 2qk1_A 158 KTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIV-----NDTQPAIRTIGFESFAILIKIF 222 (249)
T ss_dssp SSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHH-----TCSSHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHh
Confidence 544566788888888888777 4566777 77777777666 5567766788999999999985
No 14
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=96.31 E-value=0.19 Score=57.02 Aligned_cols=152 Identities=18% Similarity=0.211 Sum_probs=96.5
Q ss_pred HHHhhccCC---CCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHH
Q psy9800 96 SKVSHLESA---HPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEENEYAMKCIMRSMS 172 (486)
Q Consensus 96 ~l~~~L~~~---~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~eNeylmk~imRii~ 172 (486)
.+...|.++ +..|+.=|+.++.|+-..- ++ .++..++..+++.+..+...=-.+...|+.+++.
T Consensus 459 ~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~---------~~----~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~ 525 (960)
T 1wa5_C 459 EIAPDLTSNNIPHIILRVDAIKYIYTFRNQL---------TK----AQLIELMPILATFLQTDEYVVYTYAAITIEKILT 525 (960)
T ss_dssp HTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS---------CH----HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HhHHHhcCCCCCCceehHHHHHHHHHHHhhC---------CH----HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHh
Confidence 344456777 8889999999999875532 13 3566677777777754211111466677777665
Q ss_pred H-----------hhhhhhchHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHhcCchHHHHHHHHhhHHHHH
Q psy9800 173 T-----------LQDKVVPYLSDLLFQLTQRLAAAAKNPSKPNYNHFLFEAITLAIRIVCKQNPEAVATFEQALFPIFQV 241 (486)
Q Consensus 173 ~-----------~~e~i~p~~~~l~~~L~~il~~v~kNpsnp~f~hylFEsi~~lir~~~~~~p~~~~~~E~~L~P~~~~ 241 (486)
. -++.+.||...++++|...+.+....|.+..-+.+++++++.++.. +++ +. ..+-..++|.+..
T Consensus 526 ~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~-~~~--~~-~p~~~~l~~~L~~ 601 (960)
T 1wa5_C 526 IRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQT-SED--SI-QPLFPQLLAQFIE 601 (960)
T ss_dssp CBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHH-HTT--TT-GGGHHHHHHHHHH
T ss_pred cccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHH-HHH--hh-hhHHHHHHHHHHH
Confidence 3 2466899999999999988876421111111246899999999887 322 11 1233345555555
Q ss_pred Hhcc-----ccchhhhhHHHHHHHHHhh
Q psy9800 242 IIQQ-----DTLEFLPYTFQILSLLLEF 264 (486)
Q Consensus 242 IL~~-----dv~EF~pYvfQIls~lle~ 264 (486)
++++ +-..|..|.|+.++.+...
T Consensus 602 ~l~~~~~~~~~~~~~~~~~e~l~~l~~~ 629 (960)
T 1wa5_C 602 IVTIMAKNPSNPRFTHYTFESIGAILNY 629 (960)
T ss_dssp HHHHHTTSCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCCcHHHHHHHHHHHHHHhc
Confidence 5543 1236888999999999876
No 15
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=96.11 E-value=0.68 Score=49.66 Aligned_cols=229 Identities=11% Similarity=0.209 Sum_probs=125.4
Q ss_pred HHHHhhccccCCCCCCCCCccccchhhh---hhHhhccCCcchhhHHHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCC
Q psy9800 51 FAQQHIFPELNKPDELCPNELLSPHLKQ---IFVLLFQRLSSSKTAKYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNG 127 (486)
Q Consensus 51 ff~~~V~PeL~~~~~~~~~~~~~piLka---Ky~~~FRn~l~~~~llp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~ 127 (486)
...+.+..||++++ |..|+ +.+-.+++.--.+.++|.+.++|.|++.-|+-.||.|+-++.... +
T Consensus 86 l~~n~l~kdL~~~n---------~~ir~~AL~~L~~i~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~-p-- 153 (591)
T 2vgl_B 86 MAVNSFVKDCEDPN---------PLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDIN-A-- 153 (591)
T ss_dssp TTHHHHGGGSSSSS---------HHHHHHHHHHHHTCCSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSS-C--
T ss_pred HHHHHHHHHcCCCC---------HHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhC-h--
Confidence 34566667787654 77887 888778866656666999999999999999999999999998732 2
Q ss_pred CCcccccchhhhhHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhhhhh-----hch----HHHHHHHHH--------
Q psy9800 128 QGTLVTADVLAPLAADLYKNLLVIFTRPGSEENEYAMKCIMRSMSTLQDKV-----VPY----LSDLLFQLT-------- 190 (486)
Q Consensus 128 ~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~eNeylmk~imRii~~~~e~i-----~p~----~~~l~~~L~-------- 190 (486)
+.+.. ..++..|.+++.. +|..+..+....+..+.+.- .+. ...+++.|.
T Consensus 154 -------~~~~~--~~~~~~l~~lL~d----~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~ 220 (591)
T 2vgl_B 154 -------QMVED--QGFLDSLRDLIAD----SNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQI 220 (591)
T ss_dssp -------CCHHH--HHHHHHHHHTTSC----SCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHH
T ss_pred -------hhccc--ccHHHHHHHHhCC----CChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHH
Confidence 11110 1333444444432 22333333333333322211 111 111111111
Q ss_pred ------------------HHHHHH---hcCCCCCcchhHHHHHHHHHHHHH--HhcCchHHHHHHHHhhHHHHHHhcccc
Q psy9800 191 ------------------QRLAAA---AKNPSKPNYNHFLFEAITLAIRIV--CKQNPEAVATFEQALFPIFQVIIQQDT 247 (486)
Q Consensus 191 ------------------~il~~v---~kNpsnp~f~hylFEsi~~lir~~--~~~~p~~~~~~E~~L~P~~~~IL~~dv 247 (486)
.++..+ .+++ | +--.+||+.++..+. +..+++.....-+.+.|++..++..|
T Consensus 221 ~il~~l~~l~~~~~~~~~~~l~~l~~~l~~~-~---~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~d- 295 (591)
T 2vgl_B 221 FILDCLSNYNPKDDREAQSICERVTPRLSHA-N---SAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLSGE- 295 (591)
T ss_dssp HHHHHHHTSCCCSHHHHHHHHHHHTTCSCSS-T---THHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHTTSC-
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHHHcCC-C---hHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhcCC-
Confidence 011111 1121 1 245778888887762 11356666666566667766666544
Q ss_pred chhhhhHHHHHHHHHhhCCCCCCChhHHHhhhhhcCcc---------c---cCCCCCccchhHHHHHhhcccCcccc
Q psy9800 248 LEFLPYTFQILSLLLEFRPRGSISAPYLELYPFLLSPV---------L---WSRPGNIHPLVRLLRAFITKSEPSQF 312 (486)
Q Consensus 248 ~EF~pYvfQIls~lle~~~~~~is~~y~~L~~~Ll~p~---------l---We~~gnip~lvrlL~ayi~k~~~~~~ 312 (486)
.+.-=-+++.++.+...+|. .+.+.+..++ .+++.. + .....|+..+++-|..|++. ....+
T Consensus 296 ~~vr~~aL~~l~~i~~~~p~-~~~~~~~~~~-~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~-~d~~~ 369 (591)
T 2vgl_B 296 PEVQYVALRNINLIVQKRPE-ILKQEIKVFF-VKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATE-VDVDF 369 (591)
T ss_dssp HHHHHHHHHHHHHHHHHCCS-TTTTCTTTTS-CCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTS-SCHHH
T ss_pred ccHHHHHHHHHHHHHHhChH-HHHHHHHhhe-eccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhc-CCHHH
Confidence 34333467778888777764 3333332222 222211 0 11345788888888899877 44444
No 16
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=95.82 E-value=0.15 Score=59.38 Aligned_cols=113 Identities=12% Similarity=0.109 Sum_probs=78.9
Q ss_pred hhHHHHHHhhccCCCC--cHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCccHH----HH
Q psy9800 91 KTAKYSKVSHLESAHP--VVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEENEY----AM 164 (486)
Q Consensus 91 ~~llp~l~~~L~~~~~--vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~eNey----lm 164 (486)
+.++|.+.+.|.+++. -|+..|+-++..++..- .++.+.|+++.++..|++.+.. .|-. ..
T Consensus 474 ~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~---------~~~~~~~~l~~llp~L~~~l~d----~~~~v~~~al 540 (1230)
T 1u6g_C 474 PVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNH---------SPQVFHPHVQALVPPVVACVGD----PFYKITSEAL 540 (1230)
T ss_dssp HHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSS---------CGGGGHHHHTTTHHHHHHHHTC----SSHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhC---------CHHHHHhHHHHHHHHHHHHHcc----cchHHHHHHH
Confidence 4559999999999875 67888888888777532 1566789999999999988865 2322 33
Q ss_pred HHHHHHHHHhhh-------hhhchHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHH
Q psy9800 165 KCIMRSMSTLQD-------KVVPYLSDLLFQLTQRLAAAAKNPSKPNYNHFLFEAITLAIRI 219 (486)
Q Consensus 165 k~imRii~~~~e-------~i~p~~~~l~~~L~~il~~v~kNpsnp~f~hylFEsi~~lir~ 219 (486)
.++-.++..+++ .+.||...+++.+...+. ++..++..-....+++|.+++.
T Consensus 541 ~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~---~~d~~~~vr~~a~~~lg~L~~~ 599 (1230)
T 1u6g_C 541 LVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLK---AADIDQEVKERAISCMGQIICN 599 (1230)
T ss_dssp HHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHS---CSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHh---ccCCCHHHHHHHHHHHHHHHHH
Confidence 444445545554 677888888887766543 3444555556778888888887
No 17
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=95.30 E-value=0.91 Score=49.07 Aligned_cols=67 Identities=9% Similarity=0.035 Sum_probs=52.9
Q ss_pred cHHHHHHHhhccccCCCCCCCCCccccchhhh---hhHhhccCCcchhhHHHHHHhhccCCCCcHHHHHHHHHHHHHcc
Q psy9800 47 NLEDFAQQHIFPELNKPDELCPNELLSPHLKQ---IFVLLFQRLSSSKTAKYSKVSHLESAHPVVHSYASHAIDRVLVM 122 (486)
Q Consensus 47 ~v~~ff~~~V~PeL~~~~~~~~~~~~~piLka---Ky~~~FRn~l~~~~llp~l~~~L~~~~~vV~tyAA~aIerlL~~ 122 (486)
++.-...+.+.-||++++ |..|+ +.+-..++.--.+.++|.+.++|.|++..|+--||.|+-++...
T Consensus 103 e~~~l~in~l~kDL~~~n---------~~vr~lAL~~L~~i~~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~ 172 (618)
T 1w63_A 103 DVHLLMTNCIKNDLNHST---------QFVQGLALCTLGCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRK 172 (618)
T ss_dssp HHHHHHHHHHHHHHSCSS---------SHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCC---------HhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 455566777777888765 77877 88877776433444599999999999999999999999999863
No 18
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=95.21 E-value=2.5 Score=47.65 Aligned_cols=125 Identities=15% Similarity=0.068 Sum_probs=81.0
Q ss_pred CCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhhhhhhchH
Q psy9800 103 SAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEENEYAMKCIMRSMSTLQDKVVPYL 182 (486)
Q Consensus 103 ~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~eNeylmk~imRii~~~~e~i~p~~ 182 (486)
+++..|+.-|+.++.|+-..-..+ + .+++.++..|++.++ + .=-.+...++.+++...++.+.||.
T Consensus 517 d~~~~vr~~a~~~l~~~~~~l~~~-------~----~~l~~vl~~l~~~l~-~--~v~~~A~~al~~l~~~~~~~l~p~~ 582 (971)
T 2x1g_F 517 KLNVKLLGTALETMGSYCNWLMEN-------P----AYIPPAINLLVRGLN-S--SMSAQATLGLKELCRDCQLQLKPYA 582 (971)
T ss_dssp TSCHHHHHHHHHHHHHTHHHHC---------------CHHHHHHHHHHHHH-S--SCHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHHhcC-------H----HHHHHHHHHHHHHhC-h--HHHHHHHHHHHHHHHHHHHhccccH
Confidence 458889999999999886543321 2 355666666666664 2 2346788899999998999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHhcCchHHHHHHHHhhHH---HHHHhccc
Q psy9800 183 SDLLFQLTQRLAAAAKNPSKPNYNHFLFEAITLAIRIVCKQNPEAVATFEQALFPI---FQVIIQQD 246 (486)
Q Consensus 183 ~~l~~~L~~il~~v~kNpsnp~f~hylFEsi~~lir~~~~~~p~~~~~~E~~L~P~---~~~IL~~d 246 (486)
..++++|.+++.. .+.+..-.-+++|++|.++.. . ...+..+-++..+-|+ ++.+++++
T Consensus 583 ~~ll~~l~~~l~~---~~~~~~~~~~~~~ai~~i~~~-~-~~~~~~~~~~~ll~~l~~~l~~~~~~~ 644 (971)
T 2x1g_F 583 DPLLNACHASLNT---GRMKNSDSVRLMFSIGKLMSL-L-RPEEIPKYLDIIVSPCFEELQAICQAD 644 (971)
T ss_dssp HHHHHHHHHHHHS---TTSCHHHHHHHHHHHHHHHHT-S-CTTHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHcC---CCCChHHHHHHHHHHHHHHHh-C-CHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999988777652 212334458899999999875 2 2233344444444333 33555554
No 19
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=95.18 E-value=2.9 Score=46.86 Aligned_cols=145 Identities=11% Similarity=0.117 Sum_probs=90.8
Q ss_pred ccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhhhhhhc
Q psy9800 101 LESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEENEYAMKCIMRSMSTLQDKVVP 180 (486)
Q Consensus 101 L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~eNeylmk~imRii~~~~e~i~p 180 (486)
|.+++..|+.-|+.++.|+-..-..+ . .+++.++..++..+..+ .=-.....++.+++...++.+.|
T Consensus 498 l~~~~~~vr~~~~~~l~~~~~~l~~~-------~----~~l~~vl~~l~~~l~~~--~V~~~A~~al~~l~~~~~~~l~p 564 (963)
T 2x19_B 498 ISISNVQLADTVMFTIGALSEWLADH-------P----VMINSVLPLVLHALGNP--ELSVSSVSTLKKICRECKYDLPP 564 (963)
T ss_dssp SCCCSHHHHHHHHHHHHHTHHHHHHC-------H----HHHTTTHHHHHHHTTCG--GGHHHHHHHHHHHHHHTGGGCTT
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhC-------H----HHHHHHHHHHHHHhCCc--hHHHHHHHHHHHHHHHHHHHHHh
Confidence 34467779999999998876532211 2 45666667777777542 11246788899999888999999
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHhcCchHHHHHHHHhhHHHHHHh----ccc-cchhhh---
Q psy9800 181 YLSDLLFQLTQRLAAAAKNPSKPNYNHFLFEAITLAIRIVCKQNPEAVATFEQALFPIFQVII----QQD-TLEFLP--- 252 (486)
Q Consensus 181 ~~~~l~~~L~~il~~v~kNpsnp~f~hylFEsi~~lir~~~~~~p~~~~~~E~~L~P~~~~IL----~~d-v~EF~p--- 252 (486)
|...+++.|..++.. .+-++.-.++++|++|.++... . ++.....=+.+++++...+ +++ -.|...
T Consensus 565 ~~~~il~~l~~~l~~---~~~~~~~~~~~~eai~~i~~~~--~-~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~ 638 (963)
T 2x19_B 565 YAANIVAVSQDVLMK---QIHKTSQCMWLMQALGFLLSAL--Q-VEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIV 638 (963)
T ss_dssp THHHHHHHHHHHHHT---TCSCHHHHHHHHHHHHHHHTTS--C-HHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHH
T ss_pred hHHHHHHHHHHHhcc---CCCChHHHHHHHHHHHHHHhcC--C-HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 999999988877652 1223444689999999998641 1 2333333344444444443 332 223333
Q ss_pred hHHHHHHHHHhh
Q psy9800 253 YTFQILSLLLEF 264 (486)
Q Consensus 253 YvfQIls~lle~ 264 (486)
+.++.++.+...
T Consensus 639 ~~l~~l~~i~~~ 650 (963)
T 2x19_B 639 HILGLLSNLFTT 650 (963)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 556666655544
No 20
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=95.02 E-value=0.16 Score=58.68 Aligned_cols=78 Identities=9% Similarity=0.060 Sum_probs=54.4
Q ss_pred HHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCccc--ccchhhhhHHHHHHHHHHhhCCCCCCccHHHHHHHHHHH
Q psy9800 94 KYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLV--TADVLAPLAADLYKNLLVIFTRPGSEENEYAMKCIMRSM 171 (486)
Q Consensus 94 lp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~--~~~~l~p~~~~lL~~Lf~li~~~~~~eNeylmk~imRii 171 (486)
+..+...|.+++.-|...||.|+-+|..-=.. .+. ....+.|++.++++.+..+...-+...-.-+++|+..++
T Consensus 542 l~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~----~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi 617 (1023)
T 4hat_C 542 ILKLFEFMHETHEGVQDMACDTFIKIVQKCKY----HFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIII 617 (1023)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTH----HHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH----HhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 77777777777777999999999988763110 000 134557999999999999887533233347788888877
Q ss_pred HHhh
Q psy9800 172 STLQ 175 (486)
Q Consensus 172 ~~~~ 175 (486)
....
T Consensus 618 ~~~~ 621 (1023)
T 4hat_C 618 SEER 621 (1023)
T ss_dssp TTCC
T ss_pred HhCC
Confidence 7654
No 21
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=94.65 E-value=0.64 Score=48.44 Aligned_cols=152 Identities=14% Similarity=0.108 Sum_probs=86.7
Q ss_pred HHHHHhhccCCC-CcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHH
Q psy9800 94 KYSKVSHLESAH-PVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEENEYAMKCIMRSMS 172 (486)
Q Consensus 94 lp~l~~~L~~~~-~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~eNeylmk~imRii~ 172 (486)
+|.++++|.+++ .-|+..||.|+.++....... +..+. -...+..|.+++.. +|+.+-....+.+.
T Consensus 119 v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~-------~~~~~--~~g~i~~L~~lL~~----~~~~v~~~a~~aL~ 185 (528)
T 4b8j_A 119 VPRFVQFLTREDFPQLQFEAAWALTNIASGTSEN-------TKVVI--DHGAVPIFVKLLGS----SSDDVREQAVWALG 185 (528)
T ss_dssp HHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH-------HHHHH--HTTHHHHHHHHTTC----SCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH-------HHHHH--hCCcHHHHHHHhcC----CCHHHHHHHHHHHH
Confidence 999999999977 899999999999888732110 11111 11355666667764 45666666666665
Q ss_pred HhhhhhhchHHHHHH-HHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHhcCchHHHHHHHHhhHHHHHHhccccchhh
Q psy9800 173 TLQDKVVPYLSDLLF-QLTQRLAAAAKNPSKPNYNHFLFEAITLAIRIVCKQNPEAVATFEQALFPIFQVIIQQDTLEFL 251 (486)
Q Consensus 173 ~~~e~i~p~~~~l~~-~L~~il~~v~kNpsnp~f~hylFEsi~~lir~~~~~~p~~~~~~E~~L~P~~~~IL~~dv~EF~ 251 (486)
.+..+-.+....+.. .....+....++..++..-.....+++.+ |...|.........++|.+...|..+-.+..
T Consensus 186 ~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L----~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~ 261 (528)
T 4b8j_A 186 NVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNF----CRGKPQPSFEQTRPALPALARLIHSNDEEVL 261 (528)
T ss_dssp HHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHH----HCSSSCCCHHHHTTHHHHHHHHTTCCCHHHH
T ss_pred HHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHH----HcCCCCCcHHHHHHHHHHHHHHHCCCCHHHH
Confidence 554332222222222 12222333333334443333333333333 4433333344556788888888887777777
Q ss_pred hhHHHHHHHHH
Q psy9800 252 PYTFQILSLLL 262 (486)
Q Consensus 252 pYvfQIls~ll 262 (486)
-.+...|+.+.
T Consensus 262 ~~a~~aL~~l~ 272 (528)
T 4b8j_A 262 TDACWALSYLS 272 (528)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 77777777664
No 22
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=94.57 E-value=0.69 Score=53.66 Aligned_cols=174 Identities=11% Similarity=0.057 Sum_probs=100.2
Q ss_pred hhhHHHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCccHHHHHHHHH
Q psy9800 90 SKTAKYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEENEYAMKCIMR 169 (486)
Q Consensus 90 ~~~llp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~eNeylmk~imR 169 (486)
.+.+++.+.+.|.|++.-|+.-|+.++..+...- + . +..+.++..|+..+.. +++.+-.+..+
T Consensus 46 ~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~----~-----~----~~~~~i~~~Ll~~l~d----~~~~vR~~a~~ 108 (1230)
T 1u6g_C 46 ERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKV----K-----E----YQVETIVDTLCTNMLS----DKEQLRDISSI 108 (1230)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTS----C-----H----HHHHHHHHHHHHHTTC----SSSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhC----C-----H----HHHHHHHHHHHHHhcC----CcHHHHHHHHH
Confidence 3456999999999999999999999999887521 1 2 5677888888888764 33444444555
Q ss_pred HHHHhhhhhhch------HHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHhcCchHHHHHHHHhhHHHHHHh
Q psy9800 170 SMSTLQDKVVPY------LSDLLFQLTQRLAAAAKNPSKPNYNHFLFEAITLAIRIVCKQNPEAVATFEQALFPIFQVII 243 (486)
Q Consensus 170 ii~~~~e~i~p~------~~~l~~~L~~il~~v~kNpsnp~f~hylFEsi~~lir~~~~~~p~~~~~~E~~L~P~~~~IL 243 (486)
.+..+.+.+.+. .....+.+...+....++..++...++.+++++.+... +.. .+...-+.+++.+...|
T Consensus 109 ~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~-~~~---~l~~~~~~ll~~l~~~L 184 (1230)
T 1u6g_C 109 GLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSR-QGG---LLVNFHPSILTCLLPQL 184 (1230)
T ss_dssp HHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHH-TCS---SCTTTHHHHHHHHGGGG
T ss_pred HHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH-hHh---HHHHHHHHHHHHHHHHH
Confidence 555554444442 22233344444444444434566668888888877764 211 11112245666666667
Q ss_pred ccccchhhhhHHHHHHHHHhhCCCCCCChhHHHhhhhhcCc
Q psy9800 244 QQDTLEFLPYTFQILSLLLEFRPRGSISAPYLELYPFLLSP 284 (486)
Q Consensus 244 ~~dv~EF~pYvfQIls~lle~~~~~~is~~y~~L~~~Ll~p 284 (486)
+.+-...-.-+...++.+.+..+..-.+..+..+++.|..+
T Consensus 185 ~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~ 225 (1230)
T 1u6g_C 185 TSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKN 225 (1230)
T ss_dssp GCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHT
T ss_pred cCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccC
Confidence 65544555555666666665543212333344455554443
No 23
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=94.47 E-value=0.7 Score=42.27 Aligned_cols=157 Identities=12% Similarity=0.054 Sum_probs=97.7
Q ss_pred HHHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHH
Q psy9800 93 AKYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEENEYAMKCIMRSMS 172 (486)
Q Consensus 93 llp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~eNeylmk~imRii~ 172 (486)
.+|.++++|.+++..|+..|+.++..+....... +..+. -...+..|.++++. +++.+.+...+++.
T Consensus 87 ~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-------~~~~~--~~~~i~~L~~~l~~----~~~~~~~~a~~~L~ 153 (252)
T 4hxt_A 87 GVEVLVKLLTSTDSEVQKEAARALANIASGPDEA-------IKAIV--DAGGVEVLVKLLTS----TDSEVQKEAARALA 153 (252)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHH-------HHHHH--HTTHHHHHHHHTTC----SCHHHHHHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH-------HHHHH--HCCCHHHHHHHHcC----CCHHHHHHHHHHHH
Confidence 3999999999999999999999999887533211 11111 11356667777764 44667777777776
Q ss_pred HhhhhhhchHHHHH-HHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHhcCchHHHHH-HHHhhHHHHHHhccccchh
Q psy9800 173 TLQDKVVPYLSDLL-FQLTQRLAAAAKNPSKPNYNHFLFEAITLAIRIVCKQNPEAVATF-EQALFPIFQVIIQQDTLEF 250 (486)
Q Consensus 173 ~~~e~i~p~~~~l~-~~L~~il~~v~kNpsnp~f~hylFEsi~~lir~~~~~~p~~~~~~-E~~L~P~~~~IL~~dv~EF 250 (486)
.+...-......+. ......+....++++ |. -..+++.++-.. |..+++....+ +.-++|.+..+++.+-.+.
T Consensus 154 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~---v~~~a~~~L~~l-~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v 228 (252)
T 4hxt_A 154 NIASGPDEAIKAIVDAGGVEVLVKLLTSTD-SE---VQKEAARALANI-ASGPTSAIKAIVDAGGVEVLQKLLTSTDSEV 228 (252)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHHTTCSC-HH---HHHHHHHHHHHH-TTSBHHHHHHHHHTTHHHHHHHGGGCSCHHH
T ss_pred HHHcCCHHHHHHHHHCcCHHHHHHHHCCCC-HH---HHHHHHHHHHHH-HcCCHHHHHHHHHCCCHHHHHHHHCCCcHHH
Confidence 66443211111111 123333444444433 32 233344444444 44566655554 5568899999999887889
Q ss_pred hhhHHHHHHHHHhhCCC
Q psy9800 251 LPYTFQILSLLLEFRPR 267 (486)
Q Consensus 251 ~pYvfQIls~lle~~~~ 267 (486)
-..+..+|+.+.+..+.
T Consensus 229 ~~~a~~~L~~l~~~~~~ 245 (252)
T 4hxt_A 229 QKEAQRALENIKSGGWL 245 (252)
T ss_dssp HHHHHHHHHHHHHTCBC
T ss_pred HHHHHHHHHHHHcCCCc
Confidence 99999999999877664
No 24
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=94.15 E-value=0.36 Score=52.55 Aligned_cols=103 Identities=12% Similarity=0.098 Sum_probs=73.7
Q ss_pred cHHHHHHHhhccccCCCCCCCCCccccchhhh---hhHhhccCCcchhhHHHHHHhhc--cCCCCcHHHHHHHHHHHHHc
Q psy9800 47 NLEDFAQQHIFPELNKPDELCPNELLSPHLKQ---IFVLLFQRLSSSKTAKYSKVSHL--ESAHPVVHSYASHAIDRVLV 121 (486)
Q Consensus 47 ~v~~ff~~~V~PeL~~~~~~~~~~~~~piLka---Ky~~~FRn~l~~~~llp~l~~~L--~~~~~vV~tyAA~aIerlL~ 121 (486)
|+.-...+.+.-||++++ |+.|+ +.+-.+|+.--.+.+.|.+.++| .|++.-|+-.||.|+.|+..
T Consensus 107 e~~~L~iN~l~kDl~~~n---------~~ir~lALr~L~~i~~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~ 177 (621)
T 2vgl_A 107 ELIRLINNAIKNDLASRN---------PTFMGLALHCIANVGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYR 177 (621)
T ss_dssp HHHHHHHHHHHHHHHSCC---------HHHHHHHHHHHHHHCCHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCC---------HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 556667788888998775 78888 88888887555556699999999 99999999999999999998
Q ss_pred ccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHh
Q psy9800 122 MRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEENEYAMKCIMRSMSTL 174 (486)
Q Consensus 122 ~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~eNeylmk~imRii~~~ 174 (486)
.. ++.+.+ ..+++.+.+++.. .|.-++.+...++...
T Consensus 178 ~~----------p~~~~~--~~~~~~l~~lL~d----~d~~V~~~a~~~l~~i 214 (621)
T 2vgl_A 178 TS----------PDLVPM--GDWTSRVVHLLND----QHLGVVTAATSLITTL 214 (621)
T ss_dssp HC----------GGGCCC--CSCHHHHHHHTTC----SCHHHHHHHHHHHHHH
T ss_pred hC----------hhhcCc--hhHHHHHHHHhCC----CCccHHHHHHHHHHHH
Confidence 43 222221 2445566666753 4455666666555443
No 25
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=93.75 E-value=0.64 Score=44.44 Aligned_cols=156 Identities=11% Similarity=0.099 Sum_probs=99.5
Q ss_pred hhHHHHHHhhc-cCCCCcHHHHHHHHHHHHHcccCCCCCCccccc-chhh-hhHHHHHHHHHHhhCCCCCCccHHHHHHH
Q psy9800 91 KTAKYSKVSHL-ESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTA-DVLA-PLAADLYKNLLVIFTRPGSEENEYAMKCI 167 (486)
Q Consensus 91 ~~llp~l~~~L-~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~-~~l~-p~~~~lL~~Lf~li~~~~~~eNeylmk~i 167 (486)
..++..+.+.| .+++..|+.-|+.|+..+-.-- + ..++ ||...++..++..+...+..=-+....|+
T Consensus 59 ~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l----------~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al 128 (249)
T 2qk1_A 59 SNLLGIYGHIIQKDANIQAVALAAQSVELICDKL----------KTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKAL 128 (249)
T ss_dssp HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHH----------CTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhc----------ccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 35588999999 7899999999999999877321 2 4577 99999999999999763321113444454
Q ss_pred HHHHHHhhhhhhch--HHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHh--cCchHHHHHH-HHhhHHHHHH
Q psy9800 168 MRSMSTLQDKVVPY--LSDLLFQLTQRLAAAAKNPSKPNYNHFLFEAITLAIRIVCK--QNPEAVATFE-QALFPIFQVI 242 (486)
Q Consensus 168 mRii~~~~e~i~p~--~~~l~~~L~~il~~v~kNpsnp~f~hylFEsi~~lir~~~~--~~p~~~~~~E-~~L~P~~~~I 242 (486)
..++..... ..++ ...+++.|. ...+++ ||.- =-+++..+.+.... ..|+.+...= +.++|.+...
T Consensus 129 ~~i~~~~~~-~~~~~~l~~ll~~l~----~~l~~k-~~~v---k~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~ 199 (249)
T 2qk1_A 129 LTICKYYDP-LASSGRNEDMLKDIL----EHMKHK-TPQI---RMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQI 199 (249)
T ss_dssp HHHHHHSCT-TCTTCTTHHHHHHHH----HHTTCS-SHHH---HHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHH
T ss_pred HHHHHHccc-cccCCcHHHHHHHHH----HHHcCC-ChHH---HHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHH
Confidence 444443322 2233 556666555 444555 5533 33444455554222 2235454444 6788999999
Q ss_pred hccccchhhhhHHHHHHHHHhhC
Q psy9800 243 IQQDTLEFLPYTFQILSLLLEFR 265 (486)
Q Consensus 243 L~~dv~EF~pYvfQIls~lle~~ 265 (486)
+...-.+.-.-+++.++.+...-
T Consensus 200 l~D~~~~VR~aA~~~l~~i~~~v 222 (249)
T 2qk1_A 200 VNDTQPAIRTIGFESFAILIKIF 222 (249)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHHh
Confidence 97776677777888888776543
No 26
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=93.52 E-value=0.97 Score=42.17 Aligned_cols=141 Identities=18% Similarity=0.219 Sum_probs=89.9
Q ss_pred hhhhHHHHHHHHHhhcccccccccccccccccHHHH---HHHhhccccCCCCCCCCCccccchhhh---hhHhhccCCcc
Q psy9800 16 KYKDTAIYLVTSLASQGSTVKHGTTKSSTLVNLEDF---AQQHIFPELNKPDELCPNELLSPHLKQ---IFVLLFQRLSS 89 (486)
Q Consensus 16 r~KD~Ai~Lv~sla~~~~t~~~Gvt~~n~lv~v~~f---f~~~V~PeL~~~~~~~~~~~~~piLka---Ky~~~FRn~l~ 89 (486)
+-..+|+..++.||.... + .+..+ +...++.-|..+. +.+|. .-+.++=...+
T Consensus 72 ~V~~~a~~~l~~la~~l~----------~--~~~~~~~~ilp~ll~~l~d~~---------~~vr~~a~~aL~~~~~~~~ 130 (242)
T 2qk2_A 72 VLVAMAGKCLALLAKGLA----------K--RFSNYASACVPSLLEKFKEKK---------PNVVTALREAIDAIYASTS 130 (242)
T ss_dssp HHHHHHHHHHHHHHHHHG----------G--GGHHHHHHHHHHHHHGGGCCC---------HHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHh----------h--hHHHHHHHHHHHHHHHHcCCC---------HHHHHHHHHHHHHHHHcCC
Confidence 445588888898886542 0 22232 2333333444332 45555 33444434456
Q ss_pred hhhHHHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCccHHHHHHHHH
Q psy9800 90 SKTAKYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEENEYAMKCIMR 169 (486)
Q Consensus 90 ~~~llp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~eNeylmk~imR 169 (486)
.+.++|.+...|.+++.-|+..++..|.+++..-.+ .....++++.++..|.+++..+...-=+-..+|+..
T Consensus 131 ~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~--------~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~ 202 (242)
T 2qk2_A 131 LEAQQESIVESLSNKNPSVKSETALFIARALTRTQP--------TALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGT 202 (242)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCG--------GGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC--------CCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 778899999999999999999999999998875321 234578899999999999965222112355666666
Q ss_pred HHHHhhhh-hhchHHHH
Q psy9800 170 SMSTLQDK-VVPYLSDL 185 (486)
Q Consensus 170 ii~~~~e~-i~p~~~~l 185 (486)
+....+++ +.|+...+
T Consensus 203 l~~~vg~~~~~~~l~~L 219 (242)
T 2qk2_A 203 LIKLMGDKAVTPLLADV 219 (242)
T ss_dssp HHHHHCHHHHGGGGTTS
T ss_pred HHHHcCHHHHHHHHHhc
Confidence 66666655 56665444
No 27
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=93.29 E-value=0.68 Score=46.50 Aligned_cols=188 Identities=12% Similarity=0.098 Sum_probs=109.3
Q ss_pred hccCCcchhhHHHHHHhhccCCCCcHHHHHHHHHHHHHccc-------CC--CCCCc--ccccchhhhhHHHHHHHHHHh
Q psy9800 83 LFQRLSSSKTAKYSKVSHLESAHPVVHSYASHAIDRVLVMR-------SP--NGQGT--LVTADVLAPLAADLYKNLLVI 151 (486)
Q Consensus 83 ~FRn~l~~~~llp~l~~~L~~~~~vV~tyAA~aIerlL~~k-------~~--~~~~~--~~~~~~l~p~~~~lL~~Lf~l 151 (486)
.|+..++. .+++.+...+.+.+.-|+..|...+..+.... +. ..+.+ .-....++|+++.++..+++.
T Consensus 251 ~~~~~~~~-~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~ 329 (462)
T 1ibr_B 251 YMETYMGP-ALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQT 329 (462)
T ss_dssp GCTTTTTT-THHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHH
Confidence 35555442 67888888899998899999888777765542 00 00111 112335677889999999999
Q ss_pred hCCCCC--CccH-----HHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHhcC
Q psy9800 152 FTRPGS--EENE-----YAMKCIMRSMSTLQDKVVPYLSDLLFQLTQRLAAAAKNPSKPNYNHFLFEAITLAIRIVCKQN 224 (486)
Q Consensus 152 i~~~~~--~eNe-----ylmk~imRii~~~~e~i~p~~~~l~~~L~~il~~v~kNpsnp~f~hylFEsi~~lir~~~~~~ 224 (486)
+...+. .+.+ -..+|+.++...+++.+.| .+...+....++ .|++.-+-.+.++|.+... | .
T Consensus 330 l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~-------~~~~~l~~~l~~-~~~~~r~aal~~l~~l~~~-~--~ 398 (462)
T 1ibr_B 330 LTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVP-------HVLPFIKEHIKN-PDWRYRDAAVMAFGCILEG-P--E 398 (462)
T ss_dssp TTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHH-------HHHHHHHHHTTC-SSHHHHHHHHHHHHHTSSS-S--C
T ss_pred HHhcccccccccchHHHHHHHHHHHHHHhccHHHHH-------HHHHHHHHHhcC-CChHHHHHHHHHHHHHhcC-C--c
Confidence 965321 1111 3445555555555543333 333333333333 3455556677777766553 2 2
Q ss_pred chHHHHHHHHhhHHHHHHhccccchhhhhHHHHHHHHHhhCCCCCC--ChhHHHhhhhhcC
Q psy9800 225 PEAVATFEQALFPIFQVIIQQDTLEFLPYTFQILSLLLEFRPRGSI--SAPYLELYPFLLS 283 (486)
Q Consensus 225 p~~~~~~E~~L~P~~~~IL~~dv~EF~pYvfQIls~lle~~~~~~i--s~~y~~L~~~Ll~ 283 (486)
++.+...-+.++|.+...|+....+.--++...++.+.+..+. .+ ++....+++.|+.
T Consensus 399 ~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~-~~~~~~~l~~ll~~Ll~ 458 (462)
T 1ibr_B 399 PSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE-AAINDVYLAPLLQCLIE 458 (462)
T ss_dssp TTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGG-GCCSTTTHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccc-ccccHHHHHHHHHHHHH
Confidence 2222122245778888888766566677788888888877553 23 3455666666554
No 28
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=92.63 E-value=2.4 Score=39.43 Aligned_cols=150 Identities=11% Similarity=0.082 Sum_probs=94.3
Q ss_pred hhHHHHHHhhcc-CCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCccHHHHHHHHH
Q psy9800 91 KTAKYSKVSHLE-SAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEENEYAMKCIMR 169 (486)
Q Consensus 91 ~~llp~l~~~L~-~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~eNeylmk~imR 169 (486)
..+++.+.+.|. |++.-|+.-|+.|+..+...- ...+.|+++.++..++..+..+ +..+-.+...
T Consensus 55 ~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l----------~~~~~~~~~~ilp~ll~~l~d~----~~~vr~~a~~ 120 (242)
T 2qk2_A 55 GALVSALKKVITKDSNVVLVAMAGKCLALLAKGL----------AKRFSNYASACVPSLLEKFKEK----KPNVVTALRE 120 (242)
T ss_dssp HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHH----------GGGGHHHHHHHHHHHHHGGGCC----CHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH----------hhhHHHHHHHHHHHHHHHHcCC----CHHHHHHHHH
Confidence 355889999995 999999999999999988522 3467899999999999999763 2333333333
Q ss_pred HHHHhhhhhhchHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHhcCch-HHHHHHHHhhHHHHHHhccccc
Q psy9800 170 SMSTLQDKVVPYLSDLLFQLTQRLAAAAKNPSKPNYNHFLFEAITLAIRIVCKQNPE-AVATFEQALFPIFQVIIQQDTL 248 (486)
Q Consensus 170 ii~~~~e~i~p~~~~l~~~L~~il~~v~kNpsnp~f~hylFEsi~~lir~~~~~~p~-~~~~~E~~L~P~~~~IL~~dv~ 248 (486)
.+..+-+.. + ...+++.|. ...+++ ||.---.+...++.++.. ..|+ .....-..++|.+...|+..-.
T Consensus 121 aL~~~~~~~-~-~~~ll~~l~----~~l~~~-~~~vr~~~l~~l~~~l~~---~~~~~~~~~~l~~l~p~l~~~l~D~~~ 190 (242)
T 2qk2_A 121 AIDAIYAST-S-LEAQQESIV----ESLSNK-NPSVKSETALFIARALTR---TQPTALNKKLLKLLTTSLVKTLNEPDP 190 (242)
T ss_dssp HHHHHHTTS-C-HHHHHHHHH----HHTTCS-CHHHHHHHHHHHHHHHTT---CCGGGCCHHHHHHHHHHHHHHHTSSCH
T ss_pred HHHHHHHcC-C-HHHHHHHHH----HHHcCC-ChHHHHHHHHHHHHHHHH---cCCCCccHHHHHHHHHHHHHHhcCCCh
Confidence 333332322 2 234444443 334443 554334444444443332 2343 2223335788999999977766
Q ss_pred hhhhhHHHHHHHHHhh
Q psy9800 249 EFLPYTFQILSLLLEF 264 (486)
Q Consensus 249 EF~pYvfQIls~lle~ 264 (486)
+.-.-+++.++.+...
T Consensus 191 ~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 191 TVRDSSAEALGTLIKL 206 (242)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777788888777644
No 29
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=92.02 E-value=1.6 Score=43.77 Aligned_cols=155 Identities=9% Similarity=0.036 Sum_probs=90.0
Q ss_pred HHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHH--HHHHHHHHhhCCCCCCccHHHHHHHHHHH
Q psy9800 94 KYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAA--DLYKNLLVIFTRPGSEENEYAMKCIMRSM 171 (486)
Q Consensus 94 lp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~--~lL~~Lf~li~~~~~~eNeylmk~imRii 171 (486)
+|.+++.|.+++..++..|+.++.+++...... .++..+. .++..|.++++. .+|+.+-....+++
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~---------~~~~~~~~~~~i~~L~~~L~~---~~~~~v~~~a~~~L 89 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNP---------PIDEVISTPGVVARFVEFLKR---KENCTLQFESAWVL 89 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSC---------CHHHHHTSTTHHHHHHHHHTC---TTCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCC---------cHHHHHHcCCcHHHHHHHHCC---CCCHHHHHHHHHHH
Confidence 788999999999999999999999998743211 1111222 355666666765 33666666666666
Q ss_pred HHhhhhhhchHHHHH-HHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHhcCchHHHHH-HHHhhHHHHHHhcc-ccc
Q psy9800 172 STLQDKVVPYLSDLL-FQLTQRLAAAAKNPSKPNYNHFLFEAITLAIRIVCKQNPEAVATF-EQALFPIFQVIIQQ-DTL 248 (486)
Q Consensus 172 ~~~~e~i~p~~~~l~-~~L~~il~~v~kNpsnp~f~hylFEsi~~lir~~~~~~p~~~~~~-E~~L~P~~~~IL~~-dv~ 248 (486)
..+...-......++ ..+...+....+++ ||.--.. ++.++-.+ +...++....+ +.-++|.+..+|+. +-.
T Consensus 90 ~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~vr~~---a~~~L~~l-~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~ 164 (450)
T 2jdq_A 90 TNIASGNSLQTRIVIQAGAVPIFIELLSSE-FEDVQEQ---AVWALGNI-AGDSTMCRDYVLDCNILPPLLQLFSKQNRL 164 (450)
T ss_dssp HHHHSSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHH---HHHHHHHH-HTTCHHHHHHHHHTTCHHHHHHHTTSCCCH
T ss_pred HHHhcCCHHHHHHHHhCCCHHHHHHHHcCC-CHHHHHH---HHHHHHHH-ccCCHHHHHHHHHCCCHHHHHHHhcCCCCH
Confidence 655432211111111 22344444555554 4432233 33333333 34444433333 45678999999986 345
Q ss_pred hhhhhHHHHHHHHHhhC
Q psy9800 249 EFLPYTFQILSLLLEFR 265 (486)
Q Consensus 249 EF~pYvfQIls~lle~~ 265 (486)
+....+...|+.+....
T Consensus 165 ~v~~~a~~~L~~l~~~~ 181 (450)
T 2jdq_A 165 TMTRNAVWALSNLCRGK 181 (450)
T ss_dssp HHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 77777777777776543
No 30
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=91.97 E-value=1.4 Score=50.89 Aligned_cols=110 Identities=10% Similarity=0.133 Sum_probs=73.6
Q ss_pred HHHHHhhcc-----CCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCccHHHHHHHH
Q psy9800 94 KYSKVSHLE-----SAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEENEYAMKCIM 168 (486)
Q Consensus 94 lp~l~~~L~-----~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~eNeylmk~im 168 (486)
+|.+.+++. ++..+|+.=++.+|.|.-.--..+ + .+++.+++.||..|..+...=-+..-.+++
T Consensus 497 i~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~-------~----~~L~~vl~~L~~~l~~~~~~v~~~A~~al~ 565 (1023)
T 4hat_C 497 IKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAH-------W----NFLRTVILKLFEFMHETHEGVQDMACDTFI 565 (1023)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHC-------H----HHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhcc-------H----HHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 666666665 355667777778887753322111 2 357778888888885421111235667888
Q ss_pred HHHHHhhhhh--------hchHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHH
Q psy9800 169 RSMSTLQDKV--------VPYLSDLLFQLTQRLAAAAKNPSKPNYNHFLFEAITLAIRI 219 (486)
Q Consensus 169 Rii~~~~e~i--------~p~~~~l~~~L~~il~~v~kNpsnp~f~hylFEsi~~lir~ 219 (486)
++....++.. .||...+++.+..++. + -++.-.+-++|++|.+++.
T Consensus 566 ~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~---~--l~~~~~~~lyeai~~vi~~ 619 (1023)
T 4hat_C 566 KIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTA---D--LQPQQVHTFYKACGIIISE 619 (1023)
T ss_dssp HHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHT---T--SCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHH---h--CCHHHHHHHHHHHHHHHHh
Confidence 8888777766 4798888888777664 1 2345559999999999997
No 31
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=91.52 E-value=1.6 Score=39.07 Aligned_cols=150 Identities=12% Similarity=0.090 Sum_probs=88.7
Q ss_pred HHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHH
Q psy9800 94 KYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEENEYAMKCIMRSMST 173 (486)
Q Consensus 94 lp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~eNeylmk~imRii~~ 173 (486)
+|.++++|.+++.-|+..|+.++..+....+.. +..+. -...+..|.++++. +++.+-+...+++..
T Consensus 56 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~-------~~~i~--~~g~i~~L~~lL~~----~~~~v~~~a~~~L~~ 122 (210)
T 4db6_A 56 LPALVQLLSSPNEQILQEALWALSNIASGGNEQ-------IQAVI--DAGALPALVQLLSS----PNEQILQEALWALSN 122 (210)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH-------HHHHH--HTTCHHHHHHHTTC----SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH-------HHHHH--HCCCHHHHHHHHcC----CcHHHHHHHHHHHHH
Confidence 999999999999999999999999886532211 11110 01245566667765 356666666667766
Q ss_pred hhhhhhchHHHHH-HHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHhcCchHHHHH-HHHhhHHHHHHhccccchhh
Q psy9800 174 LQDKVVPYLSDLL-FQLTQRLAAAAKNPSKPNYNHFLFEAITLAIRIVCKQNPEAVATF-EQALFPIFQVIIQQDTLEFL 251 (486)
Q Consensus 174 ~~e~i~p~~~~l~-~~L~~il~~v~kNpsnp~f~hylFEsi~~lir~~~~~~p~~~~~~-E~~L~P~~~~IL~~dv~EF~ 251 (486)
+...-......++ ......+....+++ ++.--.. ++.++-.. |..+++....+ +.-.+|.+..+++.+-.+..
T Consensus 123 l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~---a~~aL~~l-~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~ 197 (210)
T 4db6_A 123 IASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQE---ALWALSNI-ASGGNEQKQAVKEAGALEKLEQLQSHENEKIQ 197 (210)
T ss_dssp HTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHH---HHHHHHHH-HTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHH
T ss_pred HHcCCHHHHHHHHHcCcHHHHHHHHcCC-CHHHHHH---HHHHHHHH-HcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHH
Confidence 6543222222222 12334444555554 3332233 33333333 44445554444 55688899999987777777
Q ss_pred hhHHHHHHHH
Q psy9800 252 PYTFQILSLL 261 (486)
Q Consensus 252 pYvfQIls~l 261 (486)
..+...|..+
T Consensus 198 ~~a~~aL~~l 207 (210)
T 4db6_A 198 KEAQEALEKL 207 (210)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777776655
No 32
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=91.18 E-value=5.1 Score=35.63 Aligned_cols=152 Identities=13% Similarity=0.144 Sum_probs=91.7
Q ss_pred HHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHH
Q psy9800 94 KYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEENEYAMKCIMRSMST 173 (486)
Q Consensus 94 lp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~eNeylmk~imRii~~ 173 (486)
.|.+..+|.+++.-|+..|+.++..+-...... +..+. -...+..|.+++.. +|+.+.+...+.+..
T Consensus 14 ~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~-------~~~i~--~~g~i~~L~~lL~~----~~~~v~~~a~~~L~~ 80 (210)
T 4db6_A 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQ-------IQAVI--DAGALPALVQLLSS----PNEQILQEALWALSN 80 (210)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHH-------HHHHH--HTTHHHHHHHHTTC----SCHHHHHHHHHHHHH
T ss_pred hHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHH-------HHHHH--HcCCHHHHHHHHcC----CCHHHHHHHHHHHHH
Confidence 788999999999999999999999886432211 11111 11355667777765 466777777777766
Q ss_pred hhhhhhchHHHHHH-HHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHhcCchHHHHH-HHHhhHHHHHHhccccchhh
Q psy9800 174 LQDKVVPYLSDLLF-QLTQRLAAAAKNPSKPNYNHFLFEAITLAIRIVCKQNPEAVATF-EQALFPIFQVIIQQDTLEFL 251 (486)
Q Consensus 174 ~~e~i~p~~~~l~~-~L~~il~~v~kNpsnp~f~hylFEsi~~lir~~~~~~p~~~~~~-E~~L~P~~~~IL~~dv~EF~ 251 (486)
+...-......+.+ .....+....++++ +. -.-++..++-.. +..+++....+ +.-.+|.+-.+|+.+-.+..
T Consensus 81 l~~~~~~~~~~i~~~g~i~~L~~lL~~~~-~~---v~~~a~~~L~~l-~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~ 155 (210)
T 4db6_A 81 IASGGNEQIQAVIDAGALPALVQLLSSPN-EQ---ILQEALWALSNI-ASGGNEQIQAVIDAGALPALVQLLSSPNEQIL 155 (210)
T ss_dssp HTTSCHHHHHHHHHTTCHHHHHHHTTCSC-HH---HHHHHHHHHHHH-TTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHH
T ss_pred HhcCCcHHHHHHHHCCCHHHHHHHHcCCc-HH---HHHHHHHHHHHH-HcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHH
Confidence 54322112122211 12233444455553 32 233344444444 55555554443 56689999999998877888
Q ss_pred hhHHHHHHHHHh
Q psy9800 252 PYTFQILSLLLE 263 (486)
Q Consensus 252 pYvfQIls~lle 263 (486)
..+...|+.+..
T Consensus 156 ~~a~~aL~~l~~ 167 (210)
T 4db6_A 156 QEALWALSNIAS 167 (210)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc
Confidence 888888887764
No 33
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=91.05 E-value=0.56 Score=47.13 Aligned_cols=168 Identities=12% Similarity=0.108 Sum_probs=95.4
Q ss_pred HHHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHH
Q psy9800 93 AKYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEENEYAMKCIMRSMS 172 (486)
Q Consensus 93 llp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~eNeylmk~imRii~ 172 (486)
+...+++.|.+++.-| .-+|.+|-.+.....+. ...++++..|+..+..+. .++.+....++++.
T Consensus 91 ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~------------~~w~~ll~~L~~~l~~~~--~~~~~r~~al~~l~ 155 (462)
T 1ibr_B 91 VKNYVLQTLGTETYRP-SSASQCVAGIACAEIPV------------NQWPELIPQLVANVTNPN--STEHMKESTLEAIG 155 (462)
T ss_dssp HHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGG------------TCCTTHHHHHHHHHHCTT--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccc------------cccHHHHHHHHHHhccCC--CCHHHHHHHHHHHH
Confidence 3666788888876666 88999998886643210 112456666777776521 14445555555555
Q ss_pred Hhhhh-----hhchHHHHHHHHHHHHHHHhcCCC-CCcchhHHHHHHHHHHHHHHhcCchHHHHHHHHhhHHHHHHhccc
Q psy9800 173 TLQDK-----VVPYLSDLLFQLTQRLAAAAKNPS-KPNYNHFLFEAITLAIRIVCKQNPEAVATFEQALFPIFQVIIQQD 246 (486)
Q Consensus 173 ~~~e~-----i~p~~~~l~~~L~~il~~v~kNps-np~f~hylFEsi~~lir~~~~~~p~~~~~~E~~L~P~~~~IL~~d 246 (486)
.+.++ ..++...+++.+. ...+++. ++.-.....++++.++.+ ++.+.+. ..+.+.++|.+...++.+
T Consensus 156 ~l~~~~~~~~~~~~~~~ll~~l~----~~l~~~~~~~~vr~~a~~~l~~~~~~-~~~~~~~-~~~~~~l~~~l~~~~~~~ 229 (462)
T 1ibr_B 156 YICQDIDPEQLQDKSNEILTAII----QGMRKEEPSNNVKLAATNALLNSLEF-TKANFDK-ESERHFIMQVVCEATQCP 229 (462)
T ss_dssp HHHHHSCGGGTGGGHHHHHHHHH----HHHSTTCCCHHHHHHHHHHHHHHTTT-THHHHTS-HHHHHHHHHHHHHHTTCS
T ss_pred HHHHhCCchhhHhHHHHHHHHHH----HHhCCCCCCHHHHHHHHHHHHHHHHH-HHHhhhh-hHHHHHHHHHHHHhcCCC
Confidence 44433 3556655555444 4445553 554445566666665543 2111110 123344677777666666
Q ss_pred cchhhhhHHHHHHHHHhhCCCCCCChhHH-Hhhhhhc
Q psy9800 247 TLEFLPYTFQILSLLLEFRPRGSISAPYL-ELYPFLL 282 (486)
Q Consensus 247 v~EF~pYvfQIls~lle~~~~~~is~~y~-~L~~~Ll 282 (486)
-.+.-..++++|..+.+..+. .+.+.+. .+++.++
T Consensus 230 ~~~vr~~~~~~l~~l~~~~~~-~~~~~~~~~l~~~~~ 265 (462)
T 1ibr_B 230 DTRVRVAALQNLVKIMSLYYQ-YMETYMGPALFAITI 265 (462)
T ss_dssp SHHHHHHHHHHHHHHHHHCGG-GCTTTTTTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 667777888999888877653 3444333 4444443
No 34
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=91.02 E-value=2.1 Score=42.17 Aligned_cols=154 Identities=15% Similarity=0.113 Sum_probs=87.8
Q ss_pred HHHHHh-hccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHH
Q psy9800 94 KYSKVS-HLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEENEYAMKCIMRSMS 172 (486)
Q Consensus 94 lp~l~~-~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~eNeylmk~imRii~ 172 (486)
+|.++. +|.+++.-|+.+||.||-.+..... ......+.- ..+..|.++++. ..++-+.+.....++
T Consensus 83 l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~------~~~~~vv~~---g~l~~Ll~LL~~---~~~~~v~~~A~~ALs 150 (296)
T 1xqr_A 83 MHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVA------AIQEQVLGL---GALRKLLRLLDR---DACDTVRVKALFAIS 150 (296)
T ss_dssp HHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCH------HHHHHHHHT---THHHHHHHHHHH---CSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH------HHHHHHHHC---CCHHHHHHHHcc---CCCHHHHHHHHHHHH
Confidence 999999 9999999999999999998875321 111111111 234445555543 223445555555555
Q ss_pred HhhhhhhchHHHHHH-HHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHhcCchHHHHH-HHHhhHHHHHHhccccchh
Q psy9800 173 TLQDKVVPYLSDLLF-QLTQRLAAAAKNPSKPNYNHFLFEAITLAIRIVCKQNPEAVATF-EQALFPIFQVIIQQDTLEF 250 (486)
Q Consensus 173 ~~~e~i~p~~~~l~~-~L~~il~~v~kNpsnp~f~hylFEsi~~lir~~~~~~p~~~~~~-E~~L~P~~~~IL~~dv~EF 250 (486)
.+...-.|....+.. .....+..+.+++ ++. -.-++..++-.. +..+++....+ |.-++|++-..|..+-.+.
T Consensus 151 nl~~~~~~~~~~~~~~ggi~~L~~lL~~~-d~~---v~~~A~~aLs~L-~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v 225 (296)
T 1xqr_A 151 CLVREQEAGLLQFLRLDGFSVLMRAMQQQ-VQK---LKVKSAFLLQNL-LVGHPEHKGTLCSMGMVQQLVALVRTEHSPF 225 (296)
T ss_dssp HHHTTCHHHHHHHHHTTHHHHHHHHHHSS-CHH---HHHHHHHHHHHH-HHHCGGGHHHHHHTTHHHHHHHHHTSCCSTH
T ss_pred HHHcCCcHHHHHHHHCCCHHHHHHHHcCC-CHH---HHHHHHHHHHHH-HhCChHHHHHHHHcCCHHHHHHHHcCCChhH
Confidence 443221121111111 2222333334443 232 233444444333 55566665555 6678898889998877788
Q ss_pred hhhHHHHHHHHHhh
Q psy9800 251 LPYTFQILSLLLEF 264 (486)
Q Consensus 251 ~pYvfQIls~lle~ 264 (486)
...+...|+.++..
T Consensus 226 ~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 226 HEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhC
Confidence 88888888877644
No 35
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=90.16 E-value=8.2 Score=34.89 Aligned_cols=151 Identities=10% Similarity=0.076 Sum_probs=88.3
Q ss_pred HHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHH
Q psy9800 94 KYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEENEYAMKCIMRSMST 173 (486)
Q Consensus 94 lp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~eNeylmk~imRii~~ 173 (486)
+|.++++|.+++.-++..|+.++..+....... ...+. -...+..|.+++.. +++.+-....+.+..
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~-------~~~~~--~~g~i~~L~~ll~~----~~~~v~~~a~~~L~~ 70 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASA-------IKAIV--DAGGVEVLVKLLTS----TDSEVQKEAARALAN 70 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHH-------HHHHH--HTTHHHHHHHHTTC----SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH-------HHHHH--HCCCHHHHHHHHhC----CCHHHHHHHHHHHHH
Confidence 788999999999999999999999887643211 11111 11355667777765 346666666666666
Q ss_pred hhhhhhchHHHHHH-HHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHhcCchHHHHH-HHHhhHHHHHHhccccchhh
Q psy9800 174 LQDKVVPYLSDLLF-QLTQRLAAAAKNPSKPNYNHFLFEAITLAIRIVCKQNPEAVATF-EQALFPIFQVIIQQDTLEFL 251 (486)
Q Consensus 174 ~~e~i~p~~~~l~~-~L~~il~~v~kNpsnp~f~hylFEsi~~lir~~~~~~p~~~~~~-E~~L~P~~~~IL~~dv~EF~ 251 (486)
+...-......+.+ .....+....++++ +. +-+..+.++...+..+++....+ +.-.+|.+...|..+-.+..
T Consensus 71 l~~~~~~~~~~~~~~~~i~~l~~ll~~~~-~~----v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~ 145 (252)
T 4hxt_A 71 IASGPDEAIKAIVDAGGVEVLVKLLTSTD-SE----VQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQ 145 (252)
T ss_dssp HTTSCHHHHHHHHHTTHHHHHHHHTTCSS-HH----HHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHH
T ss_pred HHcCChHHHHHHHHCCCHHHHHHHHcCCC-HH----HHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHH
Confidence 55432222222222 22333444445432 32 33333333333354555554444 44578888888887777777
Q ss_pred hhHHHHHHHHH
Q psy9800 252 PYTFQILSLLL 262 (486)
Q Consensus 252 pYvfQIls~ll 262 (486)
..+...|+.+.
T Consensus 146 ~~a~~~L~~l~ 156 (252)
T 4hxt_A 146 KEAARALANIA 156 (252)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 77777776664
No 36
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=89.91 E-value=4 Score=37.47 Aligned_cols=151 Identities=12% Similarity=0.147 Sum_probs=89.7
Q ss_pred HHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHH
Q psy9800 94 KYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEENEYAMKCIMRSMST 173 (486)
Q Consensus 94 lp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~eNeylmk~imRii~~ 173 (486)
++.+...|.+++.-++..|+.++.+++...+++ ...+. -...+..|.++++. +++.+-....+++..
T Consensus 14 ~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~-------~~~~~--~~g~i~~L~~lL~~----~~~~v~~~a~~~L~~ 80 (252)
T 4db8_A 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQ-------IQAVI--DAGALPALVQLLSS----PNEQILQEALWALSN 80 (252)
T ss_dssp HHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHH-------HHHHH--HTTHHHHHHHGGGC----SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCch-------HHHHH--HcCcHHHHHHHHcC----CCHHHHHHHHHHHHH
Confidence 889999999999999999999999988863221 11111 12355677777765 335566666666665
Q ss_pred hhhhhhchHHHHHH-HHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHhcCchH-HHHHHHHhhHHHHHHhccccchhh
Q psy9800 174 LQDKVVPYLSDLLF-QLTQRLAAAAKNPSKPNYNHFLFEAITLAIRIVCKQNPEA-VATFEQALFPIFQVIIQQDTLEFL 251 (486)
Q Consensus 174 ~~e~i~p~~~~l~~-~L~~il~~v~kNpsnp~f~hylFEsi~~lir~~~~~~p~~-~~~~E~~L~P~~~~IL~~dv~EF~ 251 (486)
+...-......+.+ .....+....+++ |+. +-+.-+..+...+...+.. -.-.+.-.+|.+...|+.+-.+..
T Consensus 81 l~~~~~~~~~~i~~~g~i~~L~~lL~~~-~~~----v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~ 155 (252)
T 4db8_A 81 IASGGNEQIQAVIDAGALPALVQLLSSP-NEQ----ILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQIL 155 (252)
T ss_dssp HTTSCHHHHHHHHHTTHHHHHHHGGGCS-CHH----HHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHH
T ss_pred HhcCCHHHHHHHHHcCCHHHHHHHHcCC-CHH----HHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHH
Confidence 55432222222222 1334444555554 333 3333333333324444433 233455688999999988766777
Q ss_pred hhHHHHHHHHH
Q psy9800 252 PYTFQILSLLL 262 (486)
Q Consensus 252 pYvfQIls~ll 262 (486)
..+...|+.+.
T Consensus 156 ~~a~~~L~~l~ 166 (252)
T 4db8_A 156 QEALWALSNIA 166 (252)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 77777777664
No 37
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=89.80 E-value=1.9 Score=44.77 Aligned_cols=156 Identities=11% Similarity=0.060 Sum_probs=92.9
Q ss_pred HHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHH
Q psy9800 94 KYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEENEYAMKCIMRSMST 173 (486)
Q Consensus 94 lp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~eNeylmk~imRii~~ 173 (486)
+|.++++|.+++..|+..|+.+|-.+....+.. ....+. ..++..|..++.. ..++.+-+...+++..
T Consensus 288 v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~------~~~~~~---~~~l~~L~~lL~~---~~~~~v~~~A~~~L~n 355 (528)
T 4b8j_A 288 CPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQ------TQCIID---HQALPCLLSLLTQ---NLKKSIKKEACWTISN 355 (528)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH------HHHHHT---TTHHHHHHHHHHS---CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHH------HHHHHH---hhhHHHHHHHHcC---CCcHHHHHHHHHHHHH
Confidence 999999999999999999999999887632210 011111 1234455555654 2256666666666665
Q ss_pred hhhhhhchHHHHHH-HHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHhcCchHHHHH-HHHhhHHHHHHhccccchhh
Q psy9800 174 LQDKVVPYLSDLLF-QLTQRLAAAAKNPSKPNYNHFLFEAITLAIRIVCKQNPEAVATF-EQALFPIFQVIIQQDTLEFL 251 (486)
Q Consensus 174 ~~e~i~p~~~~l~~-~L~~il~~v~kNpsnp~f~hylFEsi~~lir~~~~~~p~~~~~~-E~~L~P~~~~IL~~dv~EF~ 251 (486)
+...-......++. .+...+..+.+++ ++..-.....+++.+... .+++....+ +..++|.+..+|..+-.+..
T Consensus 356 l~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~---~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~ 431 (528)
T 4b8j_A 356 ITAGNKDQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAWAISNATSG---GSHDQIKYLVSEGCIKPLCDLLICPDIRIV 431 (528)
T ss_dssp HHTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHH---SCHHHHHHHHHTTCHHHHHHGGGCSCHHHH
T ss_pred HHCCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcC---CCHHHHHHHHHCCCHHHHHHHHcCCCHHHH
Confidence 54322222222221 2222333333333 343334444444444332 356655555 55688999999988877888
Q ss_pred hhHHHHHHHHHhhC
Q psy9800 252 PYTFQILSLLLEFR 265 (486)
Q Consensus 252 pYvfQIls~lle~~ 265 (486)
..++..|..++...
T Consensus 432 ~~al~~L~~l~~~~ 445 (528)
T 4b8j_A 432 TVCLEGLENILKVG 445 (528)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998887654
No 38
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=89.77 E-value=21 Score=37.18 Aligned_cols=157 Identities=12% Similarity=0.156 Sum_probs=84.6
Q ss_pred HHHHHhhccC-CCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHH
Q psy9800 94 KYSKVSHLES-AHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEENEYAMKCIMRSMS 172 (486)
Q Consensus 94 lp~l~~~L~~-~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~eNeylmk~imRii~ 172 (486)
+|.++++|.. ++..++-+||.|+-.|-...... +...+. ...+..|.+++.. +++.+-......+.
T Consensus 121 ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~------~~~vv~---~Gaip~Lv~LL~s----~~~~v~e~A~~aL~ 187 (529)
T 3tpo_A 121 IPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ------TKAVVD---GGAIPAFISLLAS----PHAHISEQAVWALG 187 (529)
T ss_dssp HHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH------HHHHHH---TTHHHHHHHHTTC----SCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHH------HHHHHH---CCCHHHHHHHHcC----CCHHHHHHHHHHHH
Confidence 9999999975 55779999999999887643211 111111 1133445556654 34444444444444
Q ss_pred HhhhhhhchHHHHHH-HHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHhc-CchHHHHHHHHhhHHHHHHhccccchh
Q psy9800 173 TLQDKVVPYLSDLLF-QLTQRLAAAAKNPSKPNYNHFLFEAITLAIRIVCKQ-NPEAVATFEQALFPIFQVIIQQDTLEF 250 (486)
Q Consensus 173 ~~~e~i~p~~~~l~~-~L~~il~~v~kNpsnp~f~hylFEsi~~lir~~~~~-~p~~~~~~E~~L~P~~~~IL~~dv~EF 250 (486)
.+..+-...-..++. .....+....+++..+.......+..+..+...|.. .+.........++|++...|+.+-.+.
T Consensus 188 nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v 267 (529)
T 3tpo_A 188 NIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEV 267 (529)
T ss_dssp HHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHH
T ss_pred HHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHH
Confidence 332221111111211 122334444555554444444455444444443532 222222334557799999998888788
Q ss_pred hhhHHHHHHHHHh
Q psy9800 251 LPYTFQILSLLLE 263 (486)
Q Consensus 251 ~pYvfQIls~lle 263 (486)
.-.+...|+.+.+
T Consensus 268 ~~~a~~aL~~l~~ 280 (529)
T 3tpo_A 268 LADSCWAISYLTD 280 (529)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhh
Confidence 8877777777763
No 39
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=88.85 E-value=3.5 Score=42.69 Aligned_cols=152 Identities=13% Similarity=0.113 Sum_probs=91.3
Q ss_pred hhhHHHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCccHHHHHHHHH
Q psy9800 90 SKTAKYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEENEYAMKCIMR 169 (486)
Q Consensus 90 ~~~llp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~eNeylmk~imR 169 (486)
++.++|.+.+.+.|++.-|+..|+.++.++...-. .+ .+.+.++.-+..+++. +++.+-+...+
T Consensus 162 ~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~---------~~---~~~~~l~~~l~~~~~d----~~~~vr~~a~~ 225 (588)
T 1b3u_A 162 KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLE---------LD---NVKSEIIPMFSNLASD----EQDSVRLLAVE 225 (588)
T ss_dssp HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSC---------HH---HHHHTHHHHHHHHHTC----SCHHHHTTHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc---------HH---hHHHHHHHHHHHHhcC----CcHHHHHHHHH
Confidence 34558888899999999999999999999876542 11 1233444445555543 44555444444
Q ss_pred HHHHhhhhhhchHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHhcCchHHHHHHHHhhHHHHHHhccccch
Q psy9800 170 SMSTLQDKVVPYLSDLLFQLTQRLAAAAKNPSKPNYNHFLFEAITLAIRIVCKQNPEAVATFEQALFPIFQVIIQQDTLE 249 (486)
Q Consensus 170 ii~~~~e~i~p~~~~l~~~L~~il~~v~kNpsnp~f~hylFEsi~~lir~~~~~~p~~~~~~E~~L~P~~~~IL~~dv~E 249 (486)
.+..+.+.+.+ ....+.+...+....+++ ++.--....++++.+.... .++ .+.+.++|.+...++.+-.+
T Consensus 226 ~l~~l~~~~~~--~~~~~~~~~~l~~~~~d~-~~~vR~~a~~~l~~l~~~~---~~~---~~~~~l~~~l~~~l~d~~~~ 296 (588)
T 1b3u_A 226 ACVNIAQLLPQ--EDLEALVMPTLRQAAEDK-SWRVRYMVADKFTELQKAV---GPE---ITKTDLVPAFQNLMKDCEAE 296 (588)
T ss_dssp HHHHHHHHSCH--HHHHHHTHHHHHHHHTCS-SHHHHHHHHHTHHHHHHHH---CHH---HHHHTHHHHHHHHHTCSSHH
T ss_pred HHHHHHHhCCH--HHHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHHHh---Ccc---cchhHHHHHHHHHhCCCcHH
Confidence 44433333222 122333444444555543 3444567788888887752 222 23456789998888766656
Q ss_pred hhhhHHHHHHHHHhhCC
Q psy9800 250 FLPYTFQILSLLLEFRP 266 (486)
Q Consensus 250 F~pYvfQIls~lle~~~ 266 (486)
.-..+.+.++.+.+..+
T Consensus 297 vr~~a~~~l~~~~~~~~ 313 (588)
T 1b3u_A 297 VRAAASHKVKEFCENLS 313 (588)
T ss_dssp HHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 66667777777766543
No 40
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=88.54 E-value=7.8 Score=40.44 Aligned_cols=157 Identities=12% Similarity=0.155 Sum_probs=87.1
Q ss_pred HHHHHhhccCC-CCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHH
Q psy9800 94 KYSKVSHLESA-HPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEENEYAMKCIMRSMS 172 (486)
Q Consensus 94 lp~l~~~L~~~-~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~eNeylmk~imRii~ 172 (486)
+|.++++|.++ +.-++-+||.|+-.|-...... ++..+.. ..+..|.+++.. +++.+-+...+.+.
T Consensus 102 ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~------~~~vv~~---GaIp~Lv~lL~s----~~~~v~e~A~~aL~ 168 (510)
T 3ul1_B 102 IPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ------TKAVVDG---GAIPAFISLLAS----PHAHISEQAVWALG 168 (510)
T ss_dssp HHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHH------HHHHHHT---THHHHHHHHTTC----SCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHH------HHHHHHC---CCHHHHHHHHcC----CCHHHHHHHHHHHH
Confidence 99999999865 4679999999999887533211 1111111 123445555654 45656555555555
Q ss_pred HhhhhhhchHHHHHH-HHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHhc-CchHHHHHHHHhhHHHHHHhccccchh
Q psy9800 173 TLQDKVVPYLSDLLF-QLTQRLAAAAKNPSKPNYNHFLFEAITLAIRIVCKQ-NPEAVATFEQALFPIFQVIIQQDTLEF 250 (486)
Q Consensus 173 ~~~e~i~p~~~~l~~-~L~~il~~v~kNpsnp~f~hylFEsi~~lir~~~~~-~p~~~~~~E~~L~P~~~~IL~~dv~EF 250 (486)
.+..+-...-..+++ .....+....++++.....-...+..+..+...|.. .+.........++|.+...|+.+-.+.
T Consensus 169 nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v 248 (510)
T 3ul1_B 169 NIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEV 248 (510)
T ss_dssp HHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHH
Confidence 443222111222221 123344455566654444433444444444443432 222222334567899999998888888
Q ss_pred hhhHHHHHHHHHh
Q psy9800 251 LPYTFQILSLLLE 263 (486)
Q Consensus 251 ~pYvfQIls~lle 263 (486)
...+...|+.|.+
T Consensus 249 ~~~A~~aL~~L~~ 261 (510)
T 3ul1_B 249 LADSCWAISYLTD 261 (510)
T ss_dssp HHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhh
Confidence 8888888887753
No 41
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=88.51 E-value=4.8 Score=42.18 Aligned_cols=156 Identities=10% Similarity=0.051 Sum_probs=92.0
Q ss_pred HHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHH
Q psy9800 94 KYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEENEYAMKCIMRSMST 173 (486)
Q Consensus 94 lp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~eNeylmk~imRii~~ 173 (486)
+|.++.+|.+++..|+..|+.|+..+....+.. .+.++.. ..+..|.+++.. .++.+-+....++..
T Consensus 295 i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~-~~~i~~~--------g~l~~L~~LL~~----~~~~i~~~a~~aL~n 361 (529)
T 3tpo_A 295 VPQLVKLLGATELPIVTPALRAIGNIVTGTDEQ-TQKVIDA--------GALAVFPSLLTN----PKTNIQKEATWTMSN 361 (529)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHH-HHHHHHT--------TGGGGHHHHTTC----SSHHHHHHHHHHHHH
T ss_pred hHHHHHHhcCCChhHHHHHHHHHHHHHccchHH-HHHHhhc--------ccHHHHHHHHcC----CCHHHHHHHHHHHHH
Confidence 899999999999999999999999987643311 0011111 123344555554 345565655555554
Q ss_pred hhhhhhchHHHHHH-HHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHhcCchHHHHH-HHHhhHHHHHHhccccchhh
Q psy9800 174 LQDKVVPYLSDLLF-QLTQRLAAAAKNPSKPNYNHFLFEAITLAIRIVCKQNPEAVATF-EQALFPIFQVIIQQDTLEFL 251 (486)
Q Consensus 174 ~~e~i~p~~~~l~~-~L~~il~~v~kNpsnp~f~hylFEsi~~lir~~~~~~p~~~~~~-E~~L~P~~~~IL~~dv~EF~ 251 (486)
+...-......+.+ .+...+....++++ + .---|+..++...++..+++....+ +.-++|++-..|...-.+.+
T Consensus 362 l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~-~---~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~ 437 (529)
T 3tpo_A 362 ITAGRQDQIQQVVNHGLVPFLVGVLSKAD-F---KTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKII 437 (529)
T ss_dssp HHTSCHHHHHHHHHTTHHHHHHHHHHSSC-H---HHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHH
T ss_pred HhcccHHHHHHHHhcCcHHHHHHHhcCCC-H---HHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHH
Confidence 43322222222221 22233334444433 2 2334555555555444566655544 66688999999987767888
Q ss_pred hhHHHHHHHHHhhCC
Q psy9800 252 PYTFQILSLLLEFRP 266 (486)
Q Consensus 252 pYvfQIls~lle~~~ 266 (486)
-.+++.|.-++....
T Consensus 438 ~~~L~aL~nil~~~~ 452 (529)
T 3tpo_A 438 QVILDAISNIFQAAE 452 (529)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhH
Confidence 888888888876644
No 42
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=88.44 E-value=5.6 Score=36.41 Aligned_cols=151 Identities=14% Similarity=0.148 Sum_probs=92.7
Q ss_pred HHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHH
Q psy9800 94 KYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEENEYAMKCIMRSMST 173 (486)
Q Consensus 94 lp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~eNeylmk~imRii~~ 173 (486)
+|.++++|.+++.-|+..|+.++..+..-.... +..+. -...+..|.++++. +|+.+-+...+++..
T Consensus 56 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~-------~~~i~--~~g~i~~L~~lL~~----~~~~v~~~a~~~L~~ 122 (252)
T 4db8_A 56 LPALVQLLSSPNEQILQEALWALSNIASGGNEQ-------IQAVI--DAGALPALVQLLSS----PNEQILQEALWALSN 122 (252)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH-------HHHHH--HTTHHHHHHHGGGC----SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHH-------HHHHH--HcCCHHHHHHHHcC----CCHHHHHHHHHHHHH
Confidence 999999999999999999999999887532111 11111 01256677777765 567777777777776
Q ss_pred hhhhhhchHHHHHH-HHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHhcCchHHHHH-HHHhhHHHHHHhccccchhh
Q psy9800 174 LQDKVVPYLSDLLF-QLTQRLAAAAKNPSKPNYNHFLFEAITLAIRIVCKQNPEAVATF-EQALFPIFQVIIQQDTLEFL 251 (486)
Q Consensus 174 ~~e~i~p~~~~l~~-~L~~il~~v~kNpsnp~f~hylFEsi~~lir~~~~~~p~~~~~~-E~~L~P~~~~IL~~dv~EF~ 251 (486)
+...-......+.. .....+....+++ ++ .-.-+++.++-.. +..+++....+ +.-.+|.+..+|..+-.+..
T Consensus 123 l~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~---~v~~~a~~~L~~l-~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~ 197 (252)
T 4db8_A 123 IASGGNEQIQAVIDAGALPALVQLLSSP-NE---QILQEALWALSNI-ASGGNEQIQAVIDAGALPALVQLLSSPNEQIL 197 (252)
T ss_dssp HTTSCHHHHHHHHHTTHHHHHHHGGGCS-CH---HHHHHHHHHHHHH-TTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHH
T ss_pred hhcCCchHHHHHHHCCCHHHHHHHHhCC-CH---HHHHHHHHHHHHH-HcCChHHHHHHHHCCCHHHHHHHHCCCCHHHH
Confidence 65443222122222 2333444445554 23 2233444444444 44455544443 56688999999988766777
Q ss_pred hhHHHHHHHHH
Q psy9800 252 PYTFQILSLLL 262 (486)
Q Consensus 252 pYvfQIls~ll 262 (486)
..+...|+.+.
T Consensus 198 ~~a~~~L~~l~ 208 (252)
T 4db8_A 198 QEALWALSNIA 208 (252)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 87777777775
No 43
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=88.22 E-value=4.6 Score=40.28 Aligned_cols=156 Identities=14% Similarity=0.059 Sum_probs=91.7
Q ss_pred HHHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHH
Q psy9800 93 AKYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEENEYAMKCIMRSMS 172 (486)
Q Consensus 93 llp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~eNeylmk~imRii~ 172 (486)
++|.++++|.+++.-|+..|+.++..+....+.. ....+. ..++..|.+++.. +++.+-+...+.+.
T Consensus 235 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~------~~~~~~---~~~l~~L~~ll~~----~~~~vr~~a~~~L~ 301 (450)
T 2jdq_A 235 VCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQ------TQVILN---CSALQSLLHLLSS----PKESIKKEACWTIS 301 (450)
T ss_dssp THHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH------HHHHHT---TTHHHHHHHHTTC----SSHHHHHHHHHHHH
T ss_pred cHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHH------HHHHHH---CccHHHHHHHHcC----CCHHHHHHHHHHHH
Confidence 4999999999999999999999999886532110 011111 1356667777765 35667777777776
Q ss_pred HhhhhhhchHHHHHH-HHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHhcCchHHHHH-HHHhhHHHHHHhccccchh
Q psy9800 173 TLQDKVVPYLSDLLF-QLTQRLAAAAKNPSKPNYNHFLFEAITLAIRIVCKQNPEAVATF-EQALFPIFQVIIQQDTLEF 250 (486)
Q Consensus 173 ~~~e~i~p~~~~l~~-~L~~il~~v~kNpsnp~f~hylFEsi~~lir~~~~~~p~~~~~~-E~~L~P~~~~IL~~dv~EF 250 (486)
.+...-......+++ .+...+....+++ +|.--.....+++.+.+. .+++....+ +..++|.+..+|+.+-.+.
T Consensus 302 ~l~~~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~v 377 (450)
T 2jdq_A 302 NITAGNRAQIQTVIDANIFPALISILQTA-EFRTRKEAAWAITNATSG---GSAEQIKYLVELGCIKPLCDLLTVMDSKI 377 (450)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHTCHHHHHHGGGSSCHHH
T ss_pred HHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcC---CCHHHHHHHHHCCCHHHHHHHhcCCCHHH
Confidence 655322222222221 2222333333332 333223333333333322 255544444 5679999999998776677
Q ss_pred hhhHHHHHHHHHhhC
Q psy9800 251 LPYTFQILSLLLEFR 265 (486)
Q Consensus 251 ~pYvfQIls~lle~~ 265 (486)
...+++.|..+++..
T Consensus 378 ~~~a~~aL~~l~~~~ 392 (450)
T 2jdq_A 378 VQVALNGLENILRLG 392 (450)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 888888888877643
No 44
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=87.95 E-value=5 Score=41.72 Aligned_cols=152 Identities=10% Similarity=0.104 Sum_probs=88.2
Q ss_pred HHHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHH
Q psy9800 93 AKYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEENEYAMKCIMRSMS 172 (486)
Q Consensus 93 llp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~eNeylmk~imRii~ 172 (486)
++|.++++|.+++.-|+..|+.|+-.+.....+. . .. .....++..|.+++.. +++.+.....+++.
T Consensus 216 ~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~-~----~~----~~~~~~l~~L~~lL~~----~d~~v~~~a~~~L~ 282 (530)
T 1wa5_B 216 AMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQ-P----DW----SVVSQALPTLAKLIYS----MDTETLVDACWAIS 282 (530)
T ss_dssp CHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSC-C----CH----HHHGGGHHHHHHHTTC----CCHHHHHHHHHHHH
T ss_pred cHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCC-C----cH----HHHHhHHHHHHHHHcC----CCHHHHHHHHHHHH
Confidence 3999999999988899999999999988755322 1 11 2233455566666654 34666666666666
Q ss_pred HhhhhhhchHHHHHH-HHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHhcCchHHHH-HHHHhhHHHHHHhccccchh
Q psy9800 173 TLQDKVVPYLSDLLF-QLTQRLAAAAKNPSKPNYNHFLFEAITLAIRIVCKQNPEAVAT-FEQALFPIFQVIIQQDTLEF 250 (486)
Q Consensus 173 ~~~e~i~p~~~~l~~-~L~~il~~v~kNpsnp~f~hylFEsi~~lir~~~~~~p~~~~~-~E~~L~P~~~~IL~~dv~EF 250 (486)
.+.+.-......++. .+...+....+++ ++.--.....+++.+ +..+++.... ++..++|.+...|+.+-.+.
T Consensus 283 ~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~-~~~v~~~a~~~L~~l----~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v 357 (530)
T 1wa5_B 283 YLSDGPQEAIQAVIDVRIPKRLVELLSHE-STLVQTPALRAVGNI----VTGNDLQTQVVINAGVLPALRLLLSSPKENI 357 (530)
T ss_dssp HHHSSCHHHHHHHHHTTCHHHHHHGGGCS-CHHHHHHHHHHHHHH----TTSCHHHHHHHHHTTHHHHHHHHTTCSCHHH
T ss_pred HHhCCCHHHHHHHHhcCcHHHHHHHHCCC-ChhhHHHHHHHHHHH----HcCCHHHHHHHHHcchHHHHHHHHcCCCHHH
Confidence 665432222222221 2333344444543 333333333333333 4344443333 34568888888998776566
Q ss_pred hhhHHHHHHHHH
Q psy9800 251 LPYTFQILSLLL 262 (486)
Q Consensus 251 ~pYvfQIls~ll 262 (486)
-..+...|+.+.
T Consensus 358 r~~A~~aL~~l~ 369 (530)
T 1wa5_B 358 KKEACWTISNIT 369 (530)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 666666666654
No 45
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=87.44 E-value=14 Score=38.19 Aligned_cols=153 Identities=13% Similarity=0.058 Sum_probs=92.5
Q ss_pred HHHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHH-HHHHHHHHhhCCCCCCccHHHHHHHHHHH
Q psy9800 93 AKYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAA-DLYKNLLVIFTRPGSEENEYAMKCIMRSM 171 (486)
Q Consensus 93 llp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~-~lL~~Lf~li~~~~~~eNeylmk~imRii 171 (486)
++|.++++|.+++.-|+..|+.++..+..... +..+..+. .++..|..++.. +++.+.....+++
T Consensus 258 ~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~----------~~~~~~~~~~~v~~Lv~lL~~----~~~~v~~~a~~~L 323 (530)
T 1wa5_B 258 ALPTLAKLIYSMDTETLVDACWAISYLSDGPQ----------EAIQAVIDVRIPKRLVELLSH----ESTLVQTPALRAV 323 (530)
T ss_dssp GHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCH----------HHHHHHHHTTCHHHHHHGGGC----SCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCH----------HHHHHHHhcCcHHHHHHHHCC----CChhhHHHHHHHH
Confidence 39999999999999999999999998875321 11111121 345666667764 4566666667777
Q ss_pred HHhhhhhhchHHHHHH-HHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHhcCchHHHHH-HHHhhHHHHHHhccccch
Q psy9800 172 STLQDKVVPYLSDLLF-QLTQRLAAAAKNPSKPNYNHFLFEAITLAIRIVCKQNPEAVATF-EQALFPIFQVIIQQDTLE 249 (486)
Q Consensus 172 ~~~~e~i~p~~~~l~~-~L~~il~~v~kNpsnp~f~hylFEsi~~lir~~~~~~p~~~~~~-E~~L~P~~~~IL~~dv~E 249 (486)
..+...-......++. .+...+....+++ ++ ...-+++.++-.+ +..+++....+ +..++|.+..+|+..-.+
T Consensus 324 ~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~---~vr~~A~~aL~~l-~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~ 398 (530)
T 1wa5_B 324 GNIVTGNDLQTQVVINAGVLPALRLLLSSP-KE---NIKKEACWTISNI-TAGNTEQIQAVIDANLIPPLVKLLEVAEYK 398 (530)
T ss_dssp HHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CH---HHHHHHHHHHHHH-TTSCHHHHHHHHHTTCHHHHHHHHHHSCHH
T ss_pred HHHHcCCHHHHHHHHHcchHHHHHHHHcCC-CH---HHHHHHHHHHHHH-HcCCHHHHHHHHHCCCHHHHHHHHhcCCHH
Confidence 6654322122222221 3333444555554 33 2334444444444 44455444433 556889999999876667
Q ss_pred hhhhHHHHHHHHHhh
Q psy9800 250 FLPYTFQILSLLLEF 264 (486)
Q Consensus 250 F~pYvfQIls~lle~ 264 (486)
....+...|+.+...
T Consensus 399 v~~~a~~aL~~l~~~ 413 (530)
T 1wa5_B 399 TKKEACWAISNASSG 413 (530)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 777788888887654
No 46
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=87.22 E-value=5 Score=41.46 Aligned_cols=147 Identities=11% Similarity=0.045 Sum_probs=82.4
Q ss_pred hhHHHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCccHHHHHHHHHH
Q psy9800 91 KTAKYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEENEYAMKCIMRS 170 (486)
Q Consensus 91 ~~llp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~eNeylmk~imRi 170 (486)
..++|.+.+.+.+++..|+.-|+.++.++...-. +..+.+.+.+++.++. . .++...=....++
T Consensus 86 ~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~---------~~~~~~~l~~~l~~l~---~----~~~~~~R~~a~~~ 149 (588)
T 1b3u_A 86 HCLLPPLESLATVEETVVRDKAVESLRAISHEHS---------PSDLEAHFVPLVKRLA---G----GDWFTSRTSACGL 149 (588)
T ss_dssp GGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSC---------HHHHHHTHHHHHHHHH---T----CSSHHHHHHHGGG
T ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCC---------HHHHHHHHHHHHHHHh---c----CCCcHHHHHHHHH
Confidence 3459999988899999999999999998876331 3445555555554442 2 2233333333444
Q ss_pred HHHhhhhhhchHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHhcCchHHHHHHHHhhHHHHHHhccccchh
Q psy9800 171 MSTLQDKVVPYLSDLLFQLTQRLAAAAKNPSKPNYNHFLFEAITLAIRIVCKQNPEAVATFEQALFPIFQVIIQQDTLEF 250 (486)
Q Consensus 171 i~~~~e~i~p~~~~l~~~L~~il~~v~kNpsnp~f~hylFEsi~~lir~~~~~~p~~~~~~E~~L~P~~~~IL~~dv~EF 250 (486)
+..+.+...+ ...+.+...+...++++ +|.--....++++.+.+. +. + ....+.++|.+...++.+-.+.
T Consensus 150 l~~~~~~~~~---~~~~~l~~~l~~l~~d~-~~~VR~~a~~~l~~l~~~-~~--~---~~~~~~l~~~l~~~~~d~~~~v 219 (588)
T 1b3u_A 150 FSVCYPRVSS---AVKAELRQYFRNLCSDD-TPMVRRAAASKLGEFAKV-LE--L---DNVKSEIIPMFSNLASDEQDSV 219 (588)
T ss_dssp HHHHTTTSCH---HHHHHHHHHHHHHHTCS-CHHHHHHHHHHHHHHHHT-SC--H---HHHHHTHHHHHHHHHTCSCHHH
T ss_pred HHHHHHhcCH---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHH-hc--H---HhHHHHHHHHHHHHhcCCcHHH
Confidence 4443333322 23455555666666554 455556777777776654 11 1 1233456677766665543333
Q ss_pred hhhHHHHHHHHHh
Q psy9800 251 LPYTFQILSLLLE 263 (486)
Q Consensus 251 ~pYvfQIls~lle 263 (486)
---+.+.|+.+.+
T Consensus 220 r~~a~~~l~~l~~ 232 (588)
T 1b3u_A 220 RLLAVEACVNIAQ 232 (588)
T ss_dssp HTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3334445544443
No 47
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=84.56 E-value=5.7 Score=41.46 Aligned_cols=156 Identities=10% Similarity=0.059 Sum_probs=90.7
Q ss_pred HHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHH
Q psy9800 94 KYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEENEYAMKCIMRSMST 173 (486)
Q Consensus 94 lp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~eNeylmk~imRii~~ 173 (486)
+|.++.+|.+++..|+..|+.|+..+....+.. .+.++... .+..|..++.. .++.+-+....++..
T Consensus 276 i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~-~~~i~~~g--------~l~~L~~LL~~----~~~~v~~~A~~aL~n 342 (510)
T 3ul1_B 276 VPQLVKLLGATELPIVTPALRAIGNIVTGTDEQ-TQKVIDAG--------ALAVFPSLLTN----PKTNIQKEATWTMSN 342 (510)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHH-HHHHHHTT--------GGGGCC-CTTC----SSHHHHHHHHHHHHH
T ss_pred chhhhhhhcCCChhhhhHHHHHHHHhhcCCHHH-HHHHhhcc--------chHHHHHHhcC----CCHHHHHHHHHHHHH
Confidence 899999999999999999999999887644311 00011111 12223334443 455666666666665
Q ss_pred hhhhhhchHHHHHH-HHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHhcCchHHHHH-HHHhhHHHHHHhccccchhh
Q psy9800 174 LQDKVVPYLSDLLF-QLTQRLAAAAKNPSKPNYNHFLFEAITLAIRIVCKQNPEAVATF-EQALFPIFQVIIQQDTLEFL 251 (486)
Q Consensus 174 ~~e~i~p~~~~l~~-~L~~il~~v~kNpsnp~f~hylFEsi~~lir~~~~~~p~~~~~~-E~~L~P~~~~IL~~dv~EF~ 251 (486)
+...-......+.+ .+...+....++++ +. ---|+..++...++..+++....+ +.-.+|++-..|...-.+.+
T Consensus 343 l~a~~~~~~~~v~~~g~i~~Lv~lL~~~~-~~---v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~ 418 (510)
T 3ul1_B 343 ITAGRQDQIQQVVNHGLVPFLVGVLSKAD-FK---TQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKII 418 (510)
T ss_dssp HTTSCHHHHHHHHHTTHHHHHHHHHHSSC-HH---HHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHH
T ss_pred HHcCcHHHHHHHHhcCCHHHHHHHHcCCC-HH---HHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHH
Confidence 44322222222221 22333334444432 22 233455555555444566655444 66788999999987767888
Q ss_pred hhHHHHHHHHHhhCC
Q psy9800 252 PYTFQILSLLLEFRP 266 (486)
Q Consensus 252 pYvfQIls~lle~~~ 266 (486)
-.+++.|.-++....
T Consensus 419 ~~~L~aL~nil~~~~ 433 (510)
T 3ul1_B 419 QVILDAISNIFQAAE 433 (510)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhH
Confidence 888888888876654
No 48
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=83.59 E-value=16 Score=42.40 Aligned_cols=76 Identities=12% Similarity=0.301 Sum_probs=55.5
Q ss_pred hhHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhhhhh--------hchHHHHHHHHHHHHHHHhcCCCCCcchhHHH
Q psy9800 139 PLAADLYKNLLVIFTRPGSEENEYAMKCIMRSMSTLQDKV--------VPYLSDLLFQLTQRLAAAAKNPSKPNYNHFLF 210 (486)
Q Consensus 139 p~~~~lL~~Lf~li~~~~~~eNeylmk~imRii~~~~e~i--------~p~~~~l~~~L~~il~~v~kNpsnp~f~hylF 210 (486)
.+++..++.||+-|.+....==+..-.|++++....++.. .||...+++.+..++... .|.-.|-++
T Consensus 562 ~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l-----~~~~~~~ly 636 (1073)
T 3gjx_A 562 KFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDL-----QPQQVHTFY 636 (1073)
T ss_dssp HHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTC-----CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhc-----CHHHHHHHH
Confidence 4678888889888875322223466678888888887765 468888888877764432 455679999
Q ss_pred HHHHHHHHH
Q psy9800 211 EAITLAIRI 219 (486)
Q Consensus 211 Esi~~lir~ 219 (486)
|++|.++..
T Consensus 637 eav~~vi~~ 645 (1073)
T 3gjx_A 637 EAVGYMIGA 645 (1073)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHh
Confidence 999999986
No 49
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=83.56 E-value=8.5 Score=42.70 Aligned_cols=148 Identities=13% Similarity=0.146 Sum_probs=84.3
Q ss_pred HHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHH
Q psy9800 94 KYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEENEYAMKCIMRSMST 173 (486)
Q Consensus 94 lp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~eNeylmk~imRii~~ 173 (486)
+|.++.+|.+++..|+-.|+.++..|-.... + +..+ ...+..+..|.++++. .+|..+-++..+.+..
T Consensus 152 ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~-~-------~~~i-~~~~~~i~~Lv~~L~~---~~d~~vr~~Aa~aL~~ 219 (780)
T 2z6g_A 152 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEA-S-------RHAI-MRSPQMVSAIVRTMQN---TNDVETARCTSGTLHN 219 (780)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHHHTSHH-H-------HHHH-TTCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHhCCCh-h-------HHHH-HhccChHHHHHHHHcC---CCCHHHHHHHHHHHHH
Confidence 9999999999999999999999998765322 1 1111 1123456666777764 3455555555555544
Q ss_pred hhhhhhchHHHHHH-HHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHhcCchHHHHH-HHHhhHHHHHHhccccchhh
Q psy9800 174 LQDKVVPYLSDLLF-QLTQRLAAAAKNPSKPNYNHFLFEAITLAIRIVCKQNPEAVATF-EQALFPIFQVIIQQDTLEFL 251 (486)
Q Consensus 174 ~~e~i~p~~~~l~~-~L~~il~~v~kNpsnp~f~hylFEsi~~lir~~~~~~p~~~~~~-E~~L~P~~~~IL~~dv~EF~ 251 (486)
+...-.+ ...+.. .....+..+.++++ + .-..+++.+|..+ |..+++....+ +.-.+|.+-..|..+-.++.
T Consensus 220 Ls~~~~~-~~~i~~~g~I~~Lv~lL~~~~-~---~v~~~A~~aL~nL-a~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~ 293 (780)
T 2z6g_A 220 LSHHREG-LLAIFKSGGIPALVNMLGSPV-D---SVLFHAITTLHNL-LLHQEGAKMAVRLAGGLQKMVALLNKTNVKFL 293 (780)
T ss_dssp HHTSHHH-HHHHHHTTHHHHHHHHTTCSC-H---HHHHHHHHHHHHH-HHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHH
T ss_pred HhCCchh-HHHHHHcCCHHHHHHHHcCCC-H---HHHHHHHHHHHHH-hCCChhhHHHHHHcCCHHHHHHHHhcCCHHHH
Confidence 3322111 111111 22334445555543 3 3455666666665 44444444445 56678888888887655555
Q ss_pred hhHHHHHH
Q psy9800 252 PYTFQILS 259 (486)
Q Consensus 252 pYvfQIls 259 (486)
..+...|.
T Consensus 294 ~~a~~aL~ 301 (780)
T 2z6g_A 294 AITTDCLQ 301 (780)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55544444
No 50
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=82.76 E-value=32 Score=37.04 Aligned_cols=174 Identities=17% Similarity=0.131 Sum_probs=95.6
Q ss_pred chhhh-------hhHhhccCCcchhhHHHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHH
Q psy9800 74 PHLKQ-------IFVLLFQRLSSSKTAKYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYK 146 (486)
Q Consensus 74 piLka-------Ky~~~FRn~l~~~~llp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~ 146 (486)
|++|- |..-...+..+.+.+++.+.++|.|++.-|..=|..++.-+.... +....+.++.+..
T Consensus 162 ~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~----------~~~~~~~~~~~~~ 231 (621)
T 2vgl_A 162 DSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKN----------PEEFKTSVSLAVS 231 (621)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC----------HHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhChhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhC----------hHHHHHHHHHHHH
Confidence 77764 444444455544477999999999988888766666666554321 3455677777777
Q ss_pred HHHHhhCCCCC---------CccHHHHHHHHHHHHHhhhhhhc-hHHHHHHHHHHHHHHHhcCCCCCc------chhHHH
Q psy9800 147 NLLVIFTRPGS---------EENEYAMKCIMRSMSTLQDKVVP-YLSDLLFQLTQRLAAAAKNPSKPN------YNHFLF 210 (486)
Q Consensus 147 ~Lf~li~~~~~---------~eNeylmk~imRii~~~~e~i~p-~~~~l~~~L~~il~~v~kNpsnp~------f~hylF 210 (486)
.|.+++..++. ..|+++---++|++..+...=-| ....+.+-|..++....+.|.... .+--+|
T Consensus 232 ~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ 311 (621)
T 2vgl_A 232 RLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLF 311 (621)
T ss_dssp HHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHH
Confidence 77777654211 22788888888888876531111 112222333333333333332001 236789
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHhhHHHHHHhccccchhhhhHHHHHHHHHh
Q psy9800 211 EAITLAIRIVCKQNPEAVATFEQALFPIFQVIIQQDTLEFLPYTFQILSLLLE 263 (486)
Q Consensus 211 Esi~~lir~~~~~~p~~~~~~E~~L~P~~~~IL~~dv~EF~pYvfQIls~lle 263 (486)
|++.+++.. ..+++... .....+...|...-.+.-=-++..++.+..
T Consensus 312 ea~~~i~~l--~~~~~~~~----~~~~~L~~~L~~~~~niry~aL~~l~~l~~ 358 (621)
T 2vgl_A 312 EAISLIIHH--DSEPNLLV----RACNQLGQFLQHRETNLRYLALESMCTLAS 358 (621)
T ss_dssp HHHHHHHHH--CCCHHHHH----HHHHHHHHHSSCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhc--CCcHHHHH----HHHHHHHHHhcCCCcchHHHHHHHHHHHHh
Confidence 999998886 24443333 344555555542212222223555555543
No 51
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=82.25 E-value=17 Score=37.02 Aligned_cols=148 Identities=13% Similarity=0.139 Sum_probs=81.6
Q ss_pred HHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHH
Q psy9800 94 KYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEENEYAMKCIMRSMST 173 (486)
Q Consensus 94 lp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~eNeylmk~imRii~~ 173 (486)
+|.++.+|.+++..|+..|+.++.++-...+ + +..+. ..+..+..|.+++.. .++..+-+...+.+..
T Consensus 19 i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~-~-------~~~~~-~~~~~i~~Lv~~L~~---~~~~~~~~~a~~~L~~ 86 (529)
T 1jdh_A 19 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEA-S-------RHAIM-RSPQMVSAIVRTMQN---TNDVETARCTAGTLHN 86 (529)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHTSHH-H-------HHHHH-TCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHcCCc-c-------HHHHH-hCcchHHHHHHHHhc---CCCHHHHHHHHHHHHH
Confidence 9999999999999999999999998875332 1 11110 012344555555543 2355555555555554
Q ss_pred hhhhhhchHHHHHH-HHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHhcCchHHHHH-HHHhhHHHHHHhccccchhh
Q psy9800 174 LQDKVVPYLSDLLF-QLTQRLAAAAKNPSKPNYNHFLFEAITLAIRIVCKQNPEAVATF-EQALFPIFQVIIQQDTLEFL 251 (486)
Q Consensus 174 ~~e~i~p~~~~l~~-~L~~il~~v~kNpsnp~f~hylFEsi~~lir~~~~~~p~~~~~~-E~~L~P~~~~IL~~dv~EF~ 251 (486)
+...-- ....+.+ .....+....++++ | .-..++..++-.. |..+++....+ +.-.+|.+-..|+.+-.++.
T Consensus 87 ls~~~~-~~~~i~~~g~i~~L~~lL~~~~-~---~v~~~a~~~L~~l-~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~ 160 (529)
T 1jdh_A 87 LSHHRE-GLLAIFKSGGIPALVKMLGSPV-D---SVLFYAITTLHNL-LLHQEGAKMAVRLAGGLQKMVALLNKTNVKFL 160 (529)
T ss_dssp HTTSHH-HHHHHHHTTHHHHHHHHTTCSC-H---HHHHHHHHHHHHH-HHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHH
T ss_pred HHcCch-hHHHHHHcCCHHHHHHHHcCCC-H---HHHHHHHHHHHHH-hcCCcchHHHHHHcCCHHHHHHHHhcCCHHHH
Confidence 433211 1111111 22233444445543 3 3345555555555 44444444444 56788989899987655555
Q ss_pred hhHHHHHH
Q psy9800 252 PYTFQILS 259 (486)
Q Consensus 252 pYvfQIls 259 (486)
..+...|+
T Consensus 161 ~~~~~~L~ 168 (529)
T 1jdh_A 161 AITTDCLQ 168 (529)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 54444444
No 52
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=81.81 E-value=12 Score=43.41 Aligned_cols=104 Identities=12% Similarity=0.149 Sum_probs=65.3
Q ss_pred HHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccc--cchhhhhHHHHHHHHHHhhCCCCCCccHHHHHHHHHHH
Q psy9800 94 KYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVT--ADVLAPLAADLYKNLLVIFTRPGSEENEYAMKCIMRSM 171 (486)
Q Consensus 94 lp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~--~~~l~p~~~~lL~~Lf~li~~~~~~eNeylmk~imRii 171 (486)
+..+...+.+++.-|...||.|+.++..-=. +.+.. .....|++.+|++++-.+...-+...---+.+|+-.++
T Consensus 568 l~~L~~~m~~~~~~vq~aA~~af~~i~~~C~----~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi 643 (1073)
T 3gjx_A 568 VNKLFEFMHETHDGVQDMACDTFIKIAQKCR----RHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMI 643 (1073)
T ss_dssp HHHHHHHTTCCSTTHHHHHHHHHHHHHHHTG----GGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH----HHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 7777788889999999999999998865321 11211 23467999999999988876522222236777777777
Q ss_pred HHhhhhh--hchHHHHHHHHHH----HHHHHhcCCC
Q psy9800 172 STLQDKV--VPYLSDLLFQLTQ----RLAAAAKNPS 201 (486)
Q Consensus 172 ~~~~e~i--~p~~~~l~~~L~~----il~~v~kNps 201 (486)
.....+. ..+...+++-+.+ ++.+..+|++
T Consensus 644 ~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~ 679 (1073)
T 3gjx_A 644 GAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATKNVD 679 (1073)
T ss_dssp TTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGG
T ss_pred HhCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCch
Confidence 7665443 2233334433333 3444445654
No 53
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=79.67 E-value=25 Score=37.52 Aligned_cols=148 Identities=13% Similarity=0.139 Sum_probs=80.8
Q ss_pred HHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHH
Q psy9800 94 KYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEENEYAMKCIMRSMST 173 (486)
Q Consensus 94 lp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~eNeylmk~imRii~~ 173 (486)
+|.++.+|.+++..|+..|+.++.++-.... + +..+. .....+..|.+.+.. .++..+-++..+.+..
T Consensus 16 i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~-~-------~~~i~-~~~~~i~~Lv~~L~~---~~~~~~~~~A~~~L~~ 83 (644)
T 2z6h_A 16 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEA-S-------RHAIM-RSPQMVSAIVRTMQN---TNDVETARCTAGTLHN 83 (644)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHTSTT-H-------HHHHT-TCHHHHHHHHHHHHS---CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHCCCh-h-------HHHHH-hccChHHHHHHHHhc---CCCHHHHHHHHHHHHH
Confidence 9999999999999999999999998865322 1 11111 012445566666654 3455555555555554
Q ss_pred hhhhhhchHHHHHH-HHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHhcCchHHHHH-HHHhhHHHHHHhccccchhh
Q psy9800 174 LQDKVVPYLSDLLF-QLTQRLAAAAKNPSKPNYNHFLFEAITLAIRIVCKQNPEAVATF-EQALFPIFQVIIQQDTLEFL 251 (486)
Q Consensus 174 ~~e~i~p~~~~l~~-~L~~il~~v~kNpsnp~f~hylFEsi~~lir~~~~~~p~~~~~~-E~~L~P~~~~IL~~dv~EF~ 251 (486)
+...-- ....+.+ .....+....++++ | .-..++..+|... +..+++....+ +.-.+|.+-..|+.+-.++.
T Consensus 84 Ls~~~~-~~~~i~~~g~i~~Lv~lL~~~~-~---~v~~~A~~aL~nL-~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~ 157 (644)
T 2z6h_A 84 LSHHRE-GLLAIFKSGGIPALVKMLGSPV-D---SVLFYAITTLHNL-LLHQEGAKMAVRLAGGLQKMVALLNKTNVKFL 157 (644)
T ss_dssp HTTSHH-HHHHHHTTTHHHHHHHHTTCSS-H---HHHHHHHHHHHHH-HHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHH
T ss_pred HhcChh-hHHHHHHcCCHHHHHHHHhCCC-H---HHHHHHHHHHHHH-HhCcchhHHHHHHCCChHHHHHHHCcCCHHHH
Confidence 433211 1111111 12233444445542 3 3345555555555 33333333333 56778888888887654444
Q ss_pred hhHHHHHH
Q psy9800 252 PYTFQILS 259 (486)
Q Consensus 252 pYvfQIls 259 (486)
..+..+|.
T Consensus 158 ~~a~~~L~ 165 (644)
T 2z6h_A 158 AITTDCLQ 165 (644)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44433443
No 54
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=78.48 E-value=3.8 Score=46.93 Aligned_cols=94 Identities=11% Similarity=0.204 Sum_probs=65.4
Q ss_pred hhHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhhhhhh--------chHHHHHHHHHHHHHHHhcCCCCCcchhHHH
Q psy9800 139 PLAADLYKNLLVIFTRPGSEENEYAMKCIMRSMSTLQDKVV--------PYLSDLLFQLTQRLAAAAKNPSKPNYNHFLF 210 (486)
Q Consensus 139 p~~~~lL~~Lf~li~~~~~~eNeylmk~imRii~~~~e~i~--------p~~~~l~~~L~~il~~v~kNpsnp~f~hylF 210 (486)
.+++.+++.++..|..+...=-+....++.|++...++.+. ||...++++|..++.. . ++.-.++++
T Consensus 536 ~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~----~-~~~~~~~~~ 610 (1049)
T 3m1i_C 536 NFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTAD----L-QPQQVHTFY 610 (1049)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTT----S-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHh----C-CHHHHHHHH
Confidence 46778888888888652111113677888898888887775 9999999998876653 2 233368999
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHhhHHH
Q psy9800 211 EAITLAIRIVCKQNPEAVATFEQALFPIF 239 (486)
Q Consensus 211 Esi~~lir~~~~~~p~~~~~~E~~L~P~~ 239 (486)
|++|.++... .+++.....-+.++|++
T Consensus 611 eai~~ii~~~--~~~~~~~~~~~~l~~~~ 637 (1049)
T 3m1i_C 611 KACGIIISEE--RSVAERNRLLSDLMQLP 637 (1049)
T ss_dssp HHHHHHHHTC--CSHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHcC--CCHHHHHHHHHHHHHHH
Confidence 9999999762 34455666666666664
No 55
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=76.54 E-value=53 Score=36.87 Aligned_cols=69 Identities=7% Similarity=-0.089 Sum_probs=44.2
Q ss_pred hhccCCcchhhHHHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCC
Q psy9800 82 LLFQRLSSSKTAKYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRP 155 (486)
Q Consensus 82 ~~FRn~l~~~~llp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~ 155 (486)
-..|+.+-+.- +|.+..+|.+++..+|.+|+.++-|+=..-+.+++.+.|.... +.+++..|-+++..+
T Consensus 321 ~~~R~~I~~~g-v~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~----i~~Lv~~l~~lL~~~ 389 (810)
T 3now_A 321 KDKAKALCEQG-VDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGA----ALKLAEACRRFLIKP 389 (810)
T ss_dssp HHHHHTTHHHH-HHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTH----HHHHHHHHHHHHHCS
T ss_pred cHHHHHHHHcC-cHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhcc----HHHHHHHHHHHhcCC
Confidence 34555555543 5999999999888999999999999854322111334555433 445555666666554
No 56
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=73.61 E-value=77 Score=33.81 Aligned_cols=79 Identities=10% Similarity=0.028 Sum_probs=50.0
Q ss_pred hhHHHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCC-------CCccHHH
Q psy9800 91 KTAKYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPG-------SEENEYA 163 (486)
Q Consensus 91 ~~llp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~-------~~eNeyl 163 (486)
+.+++.+..+|.|++.-|..-|+.++..+..... . ......+.++.++.-|-.++..+. ...|+++
T Consensus 178 ~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~-~------~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~ 250 (618)
T 1w63_A 178 EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSP-D------MLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFL 250 (618)
T ss_dssp GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHH-H------HHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHH
T ss_pred HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhCh-H------HHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChH
Confidence 3568889999999999999999999988764321 0 012344555555555544443211 1347777
Q ss_pred HHHHHHHHHHhhh
Q psy9800 164 MKCIMRSMSTLQD 176 (486)
Q Consensus 164 mk~imRii~~~~e 176 (486)
--.+.|++..+..
T Consensus 251 q~~il~~L~~l~~ 263 (618)
T 1w63_A 251 QVRILRLLRILGR 263 (618)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCC
Confidence 7777777776654
No 57
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=69.68 E-value=64 Score=31.31 Aligned_cols=148 Identities=15% Similarity=0.123 Sum_probs=79.9
Q ss_pred HHHHHHhhccC-CCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCccHHHHHHHHHHH
Q psy9800 93 AKYSKVSHLES-AHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEENEYAMKCIMRSM 171 (486)
Q Consensus 93 llp~l~~~L~~-~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~eNeylmk~imRii 171 (486)
.+|.|+++|.+ ++..|+.-|+.||-.+..-..+. . ...+. ...+.-|..++.. .+..+-+-....+
T Consensus 125 ~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~-~-----~~~~~---~ggi~~L~~lL~~----~d~~v~~~A~~aL 191 (296)
T 1xqr_A 125 ALRKLLRLLDRDACDTVRVKALFAISCLVREQEAG-L-----LQFLR---LDGFSVLMRAMQQ----QVQKLKVKSAFLL 191 (296)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHH-H-----HHHHH---TTHHHHHHHHHHS----SCHHHHHHHHHHH
T ss_pred CHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHH-H-----HHHHH---CCCHHHHHHHHcC----CCHHHHHHHHHHH
Confidence 39999999995 57889999999999888643211 0 11111 1234445555554 2344555555555
Q ss_pred HHhhhh---hhchHH--HHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHH------HHhcC-chHHHHHHHHhhHHH
Q psy9800 172 STLQDK---VVPYLS--DLLFQLTQRLAAAAKNPSKPNYNHFLFEAITLAIRI------VCKQN-PEAVATFEQALFPIF 239 (486)
Q Consensus 172 ~~~~e~---i~p~~~--~l~~~L~~il~~v~kNpsnp~f~hylFEsi~~lir~------~~~~~-p~~~~~~E~~L~P~~ 239 (486)
..+... ...... .++..|. ...+++ ++..--....+++.+.+. .|... +.....+|+ ..
T Consensus 192 s~L~~~~~~~~~~vv~~g~i~~Lv----~LL~~~-d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~----~~ 262 (296)
T 1xqr_A 192 QNLLVGHPEHKGTLCSMGMVQQLV----ALVRTE-HSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRH----RC 262 (296)
T ss_dssp HHHHHHCGGGHHHHHHTTHHHHHH----HHHTSC-CSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHH----HH
T ss_pred HHHHhCChHHHHHHHHcCCHHHHH----HHHcCC-ChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHH----HH
Confidence 554322 111111 1334444 333444 455556677777777654 01111 112223333 34
Q ss_pred HHHhccc-cchhhhhHHHHHHHHH
Q psy9800 240 QVIIQQD-TLEFLPYTFQILSLLL 262 (486)
Q Consensus 240 ~~IL~~d-v~EF~pYvfQIls~ll 262 (486)
..+-+++ ..|-+.|++.|+..+.
T Consensus 263 ~~lq~~e~~~e~~~~~~~il~~~f 286 (296)
T 1xqr_A 263 QLLQQHEEYQEELEFCEKLLQTCF 286 (296)
T ss_dssp HHHTTCGGGHHHHHHHHHHHHHHC
T ss_pred HHccchHHHHHHHHHHHHHHHHHc
Confidence 4433254 6788999999887765
No 58
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=69.22 E-value=25 Score=33.92 Aligned_cols=108 Identities=13% Similarity=0.138 Sum_probs=77.6
Q ss_pred HHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHH
Q psy9800 94 KYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEENEYAMKCIMRSMST 173 (486)
Q Consensus 94 lp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~eNeylmk~imRii~~ 173 (486)
+-.+..+|.+++..|+.-|-.+||.++.-.+ +.-=...++.+|..+.++.. .+||-+.=--+|++.+
T Consensus 35 l~~L~~LL~dkD~~vk~raL~~LeellK~~~---------~~l~~~~~e~~Ld~iI~llk----~~dEkval~A~r~L~~ 101 (265)
T 3b2a_A 35 LFLILELAGEDDETTRLRAFVALGEILKRAD---------SDLRMMVLERHLDVFINALS----QENEKVTIKALRALGY 101 (265)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHHHSC---------HHHHHHHHHHHHHHHHHTCC----STTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHhcc---------ccccHHHHHHHHHHHHHHHh----ccchhHHHHHHHHHHH
Confidence 8888999999999999999999999998642 11113567788888887775 5888544444455555
Q ss_pred hhhhhhchHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHH
Q psy9800 174 LQDKVVPYLSDLLFQLTQRLAAAAKNPSKPNYNHFLFEAITLA 216 (486)
Q Consensus 174 ~~e~i~p~~~~l~~~L~~il~~v~kNpsnp~f~hylFEsi~~l 216 (486)
+=+.+ |....-..++++.+..+.+.|. +.---|.-|.+|.+
T Consensus 102 LLe~v-pL~~~~y~Kl~~aL~dlik~~~-~il~~eaae~Lgkl 142 (265)
T 3b2a_A 102 LVKDV-PMGSKTFLKAAKTLVSLLESPD-DMMRIETIDVLSKL 142 (265)
T ss_dssp HHTTC-CBCHHHHHHHHHHHHHHTTSCC-HHHHHHHHHHHHHC
T ss_pred HHcCC-CCCHHHHHHHHHHHHHHhcCCC-chHHHHHHHHhCcC
Confidence 55566 7777888889999998888544 44455666666655
No 59
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=67.68 E-value=41 Score=35.62 Aligned_cols=31 Identities=3% Similarity=-0.092 Sum_probs=24.0
Q ss_pred hhHHHHHHhhccCCCCcHHHHHHHHHHHHHc
Q psy9800 91 KTAKYSKVSHLESAHPVVHSYASHAIDRVLV 121 (486)
Q Consensus 91 ~~llp~l~~~L~~~~~vV~tyAA~aIerlL~ 121 (486)
..+++.+++++.++++.++--+..+++.+..
T Consensus 48 ~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~ 78 (591)
T 2vgl_B 48 SSLFPDVVNCMQTDNLELKKLVYLYLMNYAK 78 (591)
T ss_dssp GGGHHHHHHTTSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcc
Confidence 3457888888888888888888888876654
No 60
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=64.61 E-value=24 Score=35.57 Aligned_cols=62 Identities=8% Similarity=0.013 Sum_probs=53.6
Q ss_pred HHHHhhccccCCCCCCCCCccccchhhh---hhHhhccCCcchhhHHHHHHhhccCCCCcHHHHHHHHHHHHHc
Q psy9800 51 FAQQHIFPELNKPDELCPNELLSPHLKQ---IFVLLFQRLSSSKTAKYSKVSHLESAHPVVHSYASHAIDRVLV 121 (486)
Q Consensus 51 ff~~~V~PeL~~~~~~~~~~~~~piLka---Ky~~~FRn~l~~~~llp~l~~~L~~~~~vV~tyAA~aIerlL~ 121 (486)
+-.+.+.-|+++++ |+.|+ +++-.-|..--.+.+.+.+.++|.|++.-|+.-|+.|+-|++.
T Consensus 104 Lv~Nsl~kDl~~~N---------~~iR~lALRtL~~I~~~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~ 168 (355)
T 3tjz_B 104 IVTSSLTKDMTGKE---------DSYRGPAVRALCQITDSTMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLK 168 (355)
T ss_dssp GGHHHHHHHHHSSC---------HHHHHHHHHHHHHHCCTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhcCCCc---------HhHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhc
Confidence 55666667887665 89999 8888888888888889999999999999999999999999975
No 61
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=63.41 E-value=1.2e+02 Score=32.09 Aligned_cols=152 Identities=11% Similarity=0.067 Sum_probs=78.1
Q ss_pred HHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHH
Q psy9800 94 KYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEENEYAMKCIMRSMST 173 (486)
Q Consensus 94 lp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~eNeylmk~imRii~~ 173 (486)
+|.++++|.+++.-|+.+|+.++..+....+.. +..+. -...+..|.++++.+ |..+-.+..+.+..
T Consensus 100 i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~-------~~~v~--~~g~i~~Lv~lL~~~----~~~~~~~a~~~L~~ 166 (644)
T 2z6h_A 100 IPALVKMLGSPVDSVLFYAITTLHNLLLHQEGA-------KMAVR--LAGGLQKMVALLNKT----NVKFLAITTDCLQI 166 (644)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTH-------HHHHH--HTTHHHHHHHGGGCC----CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchh-------HHHHH--HCCChHHHHHHHCcC----CHHHHHHHHHHHHH
Confidence 999999999999999999999999998764321 21111 123455666777652 33333333333332
Q ss_pred hhhhhhchHHHHHH-HHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHhcCchHHHHH-HHHhhHHHHHHhccccchhh
Q psy9800 174 LQDKVVPYLSDLLF-QLTQRLAAAAKNPSKPNYNHFLFEAITLAIRIVCKQNPEAVATF-EQALFPIFQVIIQQDTLEFL 251 (486)
Q Consensus 174 ~~e~i~p~~~~l~~-~L~~il~~v~kNpsnp~f~hylFEsi~~lir~~~~~~p~~~~~~-E~~L~P~~~~IL~~dv~EF~ 251 (486)
+...-......+.. .....+..+.+++++ ..+.+..+.+++..| ..++....+ +.-.+|.+...|+.+-.+..
T Consensus 167 La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~----~~~~~~a~~~L~nLs-~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~ 241 (644)
T 2z6h_A 167 LAYGNQESKLIILASGGPQALVNIMRTYTY----EKLLWTTSRVLKVLS-VCSSNKPAIVEAGGMQALGLHLTDPSQRLV 241 (644)
T ss_dssp HHTTCHHHHHHHHHTTHHHHHHHHHTTCCC----HHHHHHHHHHHHHHT-TCTTHHHHHHHTTHHHHHHTTTTCSCHHHH
T ss_pred HHhcCcHHHHHHHHcCChHHHHHHHHcCCh----HHHHHHHHHHHHHHh-cCcccHHHHHHCCCHHHHHHHHhcCCHHHH
Confidence 22111000001110 112223333444432 223444444444423 334433333 44466777777776655666
Q ss_pred hhHHHHHHHHHh
Q psy9800 252 PYTFQILSLLLE 263 (486)
Q Consensus 252 pYvfQIls~lle 263 (486)
..+..+|+.|..
T Consensus 242 ~~a~~~L~nL~~ 253 (644)
T 2z6h_A 242 QNCLWTLRNLSD 253 (644)
T ss_dssp HHHHHHHHHHGG
T ss_pred HHHHHHHHHHhh
Confidence 656655555543
No 62
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=58.89 E-value=28 Score=32.85 Aligned_cols=154 Identities=15% Similarity=0.154 Sum_probs=81.7
Q ss_pred hhccCCcchhhH-----HHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCC
Q psy9800 82 LLFQRLSSSKTA-----KYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPG 156 (486)
Q Consensus 82 ~~FRn~l~~~~l-----lp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~ 156 (486)
..+++.-++..+ +|.++++|.+++.-|+..||.|+..|-.-.+.+ +..+.- ..-+..|.+++..
T Consensus 37 L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~n-------k~~I~~--~GaI~~Lv~lL~~-- 105 (233)
T 3tt9_A 37 ECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDN-------KLEVAE--LNGVPRLLQVLKQ-- 105 (233)
T ss_dssp HHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHH-------HHHHHH--TTHHHHHHHHHHH--
T ss_pred HHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH-------HHHHHH--cCCHHHHHHHHcc--
Confidence 677776666655 999999999999999999999999775421111 233311 1122333344432
Q ss_pred CCccHHHHHHHHHHHHHhh--hhhhch-HHHHHHHHHHHHH-HHhc----CCCC--CcchhHHHHHHHHHHHHHHhcCch
Q psy9800 157 SEENEYAMKCIMRSMSTLQ--DKVVPY-LSDLLFQLTQRLA-AAAK----NPSK--PNYNHFLFEAITLAIRIVCKQNPE 226 (486)
Q Consensus 157 ~~eNeylmk~imRii~~~~--e~i~p~-~~~l~~~L~~il~-~v~k----Npsn--p~f~hylFEsi~~lir~~~~~~p~ 226 (486)
..++.+-+.....+..+. +...+. ...-+..|++.+. -.+. .+++ ..-+--.||.-+.++|..+..+++
T Consensus 106 -~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss~~~~ 184 (233)
T 3tt9_A 106 -TRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGAD 184 (233)
T ss_dssp -CCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTTSCHH
T ss_pred -CCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhccccCCcccccccccccchHHHHHHHHHHHHHHhcCCHH
Confidence 112223333222222111 222211 1112233332211 1111 1111 122457888888899985555777
Q ss_pred HHHHH--HHHhhHHHHHHhcccc
Q psy9800 227 AVATF--EQALFPIFQVIIQQDT 247 (486)
Q Consensus 227 ~~~~~--E~~L~P~~~~IL~~dv 247 (486)
.-..+ ++-++|.+-++++..+
T Consensus 185 ~R~~~r~~~Gli~~Lv~~l~~~~ 207 (233)
T 3tt9_A 185 GRKAMRRCDGLIDSLVHYVRGTI 207 (233)
T ss_dssp HHHHHHTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCcHHHHHHHHHhhh
Confidence 77766 2357788888877654
No 63
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=57.95 E-value=58 Score=36.53 Aligned_cols=153 Identities=16% Similarity=0.132 Sum_probs=97.2
Q ss_pred HHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhH--HHHHHHHHHhhCCCCCCccHHHHHHHHHHH
Q psy9800 94 KYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLA--ADLYKNLLVIFTRPGSEENEYAMKCIMRSM 171 (486)
Q Consensus 94 lp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~--~~lL~~Lf~li~~~~~~eNeylmk~imRii 171 (486)
+|.++++|.+++.-|+..|+.||..|....+ ....+. ...+.-|.++++. +++-+-+..-..+
T Consensus 625 l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~-----------~~~~~v~~~g~l~~Lv~LL~s----~d~~vq~~Aa~AL 689 (810)
T 3now_A 625 VSKIEYYLMEDHLYLTRAAAQCLCNLVMSED-----------VIKMFEGNNDRVKFLALLCED----EDEETATACAGAL 689 (810)
T ss_dssp HHHHHHHHHSCCTTHHHHHHHHHHHHTTSHH-----------HHHHHHSSSSHHHHHHHGGGC----SSHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCChH-----------HHHHHHhccCcHHHHHHHhcC----CCHHHHHHHHHHH
Confidence 9999999999999999999999999877432 111111 1345566677765 3455666655666
Q ss_pred HHhhhhhhchHHHHHH--HHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHhcCchHHHHH-HHHhhHHHHHHhccc--
Q psy9800 172 STLQDKVVPYLSDLLF--QLTQRLAAAAKNPSKPNYNHFLFEAITLAIRIVCKQNPEAVATF-EQALFPIFQVIIQQD-- 246 (486)
Q Consensus 172 ~~~~e~i~p~~~~l~~--~L~~il~~v~kNpsnp~f~hylFEsi~~lir~~~~~~p~~~~~~-E~~L~P~~~~IL~~d-- 246 (486)
..+...-......++. .....+..+.+++ |+..-|....+++.+.. .+++....+ |.-.+|++..+|+..
T Consensus 690 anLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~-d~~vq~~A~~aL~NL~~----~s~e~~~~l~e~G~i~~L~~LL~~~d~ 764 (810)
T 3now_A 690 AIITSVSVKCCEKILAIASWLDILHTLIANP-SPAVQHRGIVIILNMIN----AGEEIAKKLFETDIMELLSGLGQLPDD 764 (810)
T ss_dssp HHHHHHCHHHHHHHHTSTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHT----TCHHHHHHHHTSTHHHHHTTSCCCTTS
T ss_pred HHHhCCCHHHHHHHHHHcCCHHHHHHHHCCC-CHHHHHHHHHHHHHHHh----CCHHHHHHHHHCCCHHHHHHHHhCccc
Confidence 6554421112223332 3444555666654 44445665555555543 234444444 556889999998643
Q ss_pred -cchhhhhHHHHHHHHHhhCC
Q psy9800 247 -TLEFLPYTFQILSLLLEFRP 266 (486)
Q Consensus 247 -v~EF~pYvfQIls~lle~~~ 266 (486)
-.+++.-+.+.|..++++.-
T Consensus 765 ~~~~i~e~Al~aL~~ll~~g~ 785 (810)
T 3now_A 765 TRAKAREVATQCLAAAERYRI 785 (810)
T ss_dssp TTHHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHhCCC
Confidence 46899999999999998743
No 64
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=55.99 E-value=80 Score=32.17 Aligned_cols=150 Identities=17% Similarity=0.146 Sum_probs=76.4
Q ss_pred hccCCcchhhH-----HHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCC
Q psy9800 83 LFQRLSSSKTA-----KYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGS 157 (486)
Q Consensus 83 ~FRn~l~~~~l-----lp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~ 157 (486)
.+++.-.+..+ +|.++++|.+++.-++-.||.|+..|....+++ +..+.- ...+..|.+++..
T Consensus 30 ~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~-------k~~i~~--~G~i~~Lv~lL~~--- 97 (457)
T 1xm9_A 30 CFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTN-------KLETRR--QNGIREAVSLLRR--- 97 (457)
T ss_dssp TSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHH-------HHHHHH--TTCHHHHHHHHTT---
T ss_pred HcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHH-------HHHHHH--cCCHHHHHHHHhh---
Confidence 35555545344 999999999999999999999999888742211 222210 1123445555663
Q ss_pred CccHHHHHHHHHHHHHhhhh--hhch-HHHHHHHHHHHHHHH-h---cCCCCC---cchhHHHHHHHHHHHHHHhcCchH
Q psy9800 158 EENEYAMKCIMRSMSTLQDK--VVPY-LSDLLFQLTQRLAAA-A---KNPSKP---NYNHFLFEAITLAIRIVCKQNPEA 227 (486)
Q Consensus 158 ~eNeylmk~imRii~~~~e~--i~p~-~~~l~~~L~~il~~v-~---kNpsnp---~f~hylFEsi~~lir~~~~~~p~~ 227 (486)
..++.+-+-....+..+... .... ....++.|...+..- + ++++.. .-..-+++.-+..++..|.. |+.
T Consensus 98 ~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~-~~~ 176 (457)
T 1xm9_A 98 TGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA-DAG 176 (457)
T ss_dssp CCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTS-HHH
T ss_pred CCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccC-HHH
Confidence 23444444444444433322 2211 113344444433110 0 112110 01233554555555554544 666
Q ss_pred HHHHHH--HhhHHHHHHhcc
Q psy9800 228 VATFEQ--ALFPIFQVIIQQ 245 (486)
Q Consensus 228 ~~~~E~--~L~P~~~~IL~~ 245 (486)
...+-+ -.+|.+...|+.
T Consensus 177 ~~~i~~~~g~i~~Lv~lL~~ 196 (457)
T 1xm9_A 177 RQTMRNYSGLIDSLMAYVQN 196 (457)
T ss_dssp HHHHTTSTTHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHh
Confidence 666642 467877777775
No 65
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=53.02 E-value=1.9e+02 Score=31.80 Aligned_cols=147 Identities=10% Similarity=0.059 Sum_probs=74.0
Q ss_pred HHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHH
Q psy9800 94 KYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEENEYAMKCIMRSMST 173 (486)
Q Consensus 94 lp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~eNeylmk~imRii~~ 173 (486)
+|.++.+|.+++.-|+.+|+.|+-.|....... +..+. -...+..|.+++.. +|..+.......+..
T Consensus 236 I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~-------~~~v~--~~g~v~~Lv~lL~~----~~~~v~~~a~~aL~~ 302 (780)
T 2z6g_A 236 IPALVNMLGSPVDSVLFHAITTLHNLLLHQEGA-------KMAVR--LAGGLQKMVALLNK----TNVKFLAITTDCLQI 302 (780)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTH-------HHHHH--HTTHHHHHHHGGGC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhh-------HHHHH--HcCCHHHHHHHHhc----CCHHHHHHHHHHHHH
Confidence 999999999999999999999999988754321 22221 02345666777765 344444443333332
Q ss_pred hh---hhhhchH--HHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHhcCchHHHHH-HHHhhHHHHHHhcccc
Q psy9800 174 LQ---DKVVPYL--SDLLFQLTQRLAAAAKNPSKPNYNHFLFEAITLAIRIVCKQNPEAVATF-EQALFPIFQVIIQQDT 247 (486)
Q Consensus 174 ~~---e~i~p~~--~~l~~~L~~il~~v~kNpsnp~f~hylFEsi~~lir~~~~~~p~~~~~~-E~~L~P~~~~IL~~dv 247 (486)
+. ++..... ...++.| ..+.++++.. ..-+..+.+++..|. .++....+ +.-.+|.+...|+..-
T Consensus 303 La~~~~e~~~~i~~~~~i~~L----v~lL~~~~~~----~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~l~~Ll~lL~~~~ 373 (780)
T 2z6g_A 303 LAYGNQESKLIILASGGPQAL----VNIMRTYTYE----KLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPS 373 (780)
T ss_dssp HHTTCHHHHHHHHTTTHHHHH----HHHHTTCCCH----HHHHHHHHHHHHHHT-STTHHHHHHHTTHHHHHGGGTTCSC
T ss_pred HhcCChHHHHHHHHcCCHHHH----HHHHhcCCHH----HHHHHHHHHHHHhhc-ChHHHHHHHHhchHHHHHHHHcCCc
Confidence 22 1111100 1122223 3334444321 122233333333232 33333333 4445677766676554
Q ss_pred chhhhhHHHHHHHHH
Q psy9800 248 LEFLPYTFQILSLLL 262 (486)
Q Consensus 248 ~EF~pYvfQIls~ll 262 (486)
.+....+..+|+.+.
T Consensus 374 ~~~~~~a~~~L~~L~ 388 (780)
T 2z6g_A 374 QRLVQNCLWTLRNLS 388 (780)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHh
Confidence 445554555555444
No 66
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=47.78 E-value=89 Score=35.88 Aligned_cols=65 Identities=17% Similarity=0.148 Sum_probs=59.2
Q ss_pred hhccCCcchhhH---HHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCC
Q psy9800 82 LLFQRLSSSKTA---KYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTR 154 (486)
Q Consensus 82 ~~FRn~l~~~~l---lp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~ 154 (486)
.||=...+...+ .|+|.+-|...+..++=-+|.-|+.+..+-++ +.+++|+++.|+-.|=+..+.
T Consensus 238 ~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~--------~~~~~~f~~~l~p~~~~~~~~ 305 (986)
T 2iw3_A 238 TTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVED--------PQVIAPFLGKLLPGLKSNFAT 305 (986)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCC--------HHHHHHHHTTTHHHHHHHTTT
T ss_pred CeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCC--------HHHHhhhhhhhhhHHHHHhhc
Confidence 899888888777 99999999999999999999999999888763 999999999999999888876
No 67
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=46.07 E-value=2.4e+02 Score=28.19 Aligned_cols=149 Identities=11% Similarity=0.079 Sum_probs=79.8
Q ss_pred HHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHH
Q psy9800 94 KYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEENEYAMKCIMRSMST 173 (486)
Q Consensus 94 lp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~eNeylmk~imRii~~ 173 (486)
+|.++++|.+++..|+.+|+.++..+....+.. +..+. -...+..|.+++.. ++..+..+..+.+..
T Consensus 103 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~-------~~~i~--~~g~i~~L~~ll~~----~~~~~~~~~~~~L~~ 169 (529)
T 1jdh_A 103 IPALVKMLGSPVDSVLFYAITTLHNLLLHQEGA-------KMAVR--LAGGLQKMVALLNK----TNVKFLAITTDCLQI 169 (529)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTH-------HHHHH--HHTHHHHHHHGGGC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcch-------HHHHH--HcCCHHHHHHHHhc----CCHHHHHHHHHHHHH
Confidence 999999999999999999999999987754321 22221 12345566667764 334343333333332
Q ss_pred hh---hhhhch--HHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHhcCchHHHHH-HHHhhHHHHHHhcccc
Q psy9800 174 LQ---DKVVPY--LSDLLFQLTQRLAAAAKNPSKPNYNHFLFEAITLAIRIVCKQNPEAVATF-EQALFPIFQVIIQQDT 247 (486)
Q Consensus 174 ~~---e~i~p~--~~~l~~~L~~il~~v~kNpsnp~f~hylFEsi~~lir~~~~~~p~~~~~~-E~~L~P~~~~IL~~dv 247 (486)
+. ++.... ....++.|...+ +++++ ....++.+.+++..+ .+++....+ +.-.+|.+...|+.+-
T Consensus 170 la~~~~~~~~~i~~~~~i~~L~~ll----~~~~~----~~~~~~a~~~L~~l~-~~~~~~~~~~~~g~~~~L~~ll~~~~ 240 (529)
T 1jdh_A 170 LAYGNQESKLIILASGGPQALVNIM----RTYTY----EKLLWTTSRVLKVLS-VCSSNKPAIVEAGGMQALGLHLTDPS 240 (529)
T ss_dssp HHTTCHHHHHHHHHTTHHHHHHHHH----HHCCC----HHHHHHHHHHHHHHT-TSTTHHHHHHHTTHHHHHHTTTTSSC
T ss_pred HHhCCHHHHHHHHHCCCHHHHHHHH----HhCCh----HHHHHHHHHHHHHHh-cCcccHHHHHHCCCHHHHHHHHhCCC
Confidence 22 111110 011233333333 33322 234444444455423 344443433 4456777777777765
Q ss_pred chhhhhHHHHHHHHHhh
Q psy9800 248 LEFLPYTFQILSLLLEF 264 (486)
Q Consensus 248 ~EF~pYvfQIls~lle~ 264 (486)
.+....+..+|+.+...
T Consensus 241 ~~~~~~a~~~L~~l~~~ 257 (529)
T 1jdh_A 241 QRLVQNCLWTLRNLSDA 257 (529)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHhcC
Confidence 56666666666665543
No 68
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=45.33 E-value=2.3e+02 Score=32.89 Aligned_cols=136 Identities=15% Similarity=0.191 Sum_probs=80.0
Q ss_pred HHHHHHhh-cc-C-CCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCC--C---CCCcc---H
Q psy9800 93 AKYSKVSH-LE-S-AHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTR--P---GSEEN---E 161 (486)
Q Consensus 93 llp~l~~~-L~-~-~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~--~---~~~eN---e 161 (486)
++|.+.+. +. + ++..++.-+..+++++..--..+ + .+++.+|+.+|+.+.. + +...+ .
T Consensus 530 ~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~-------p----~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k 598 (1204)
T 3a6p_A 530 DGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYR-------P----EFLPQVFSKLFSSVTFETVEESKAPRTRAVR 598 (1204)
T ss_dssp HHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGTC-------G----GGHHHHHHHHHHHHHCCTTCSTTSCCCHHHH
T ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcC-------c----hHHHHHHHHHHHhhccCCcccccccccHHHH
Confidence 45555554 32 2 45556655666777765543211 2 5778888888877743 1 11122 2
Q ss_pred ----HHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHHhcCC-CCCcchhHHHHHHHHHHHHHHhcCchHHHH-HHHHh
Q psy9800 162 ----YAMKCIMRSMSTLQDKVVPYLSDLLFQLTQRLAAAAKNP-SKPNYNHFLFEAITLAIRIVCKQNPEAVAT-FEQAL 235 (486)
Q Consensus 162 ----ylmk~imRii~~~~e~i~p~~~~l~~~L~~il~~v~kNp-snp~f~hylFEsi~~lir~~~~~~p~~~~~-~E~~L 235 (486)
-...|+.|+...+++.+.|+...+.+++..++. +.. -..+-.-.+.|+++++... . .+.+.... ++..+
T Consensus 599 ~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~---~~~~l~~~e~~~L~eal~~ia~~-~-~~~~~~~~~l~~ll 673 (1204)
T 3a6p_A 599 NVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLS---NELLLTQMEKCALMEALVLISNQ-F-KNYERQKVFLEELM 673 (1204)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHH---STTTSCHHHHHHHHHHHHHHHGG-G-CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh---CcccccHHHHHHHHHHHHHHhcc-C-CCHHHHHHHHHHHH
Confidence 334467788888888899999999998887764 111 1222235678888777222 1 23445566 66666
Q ss_pred hHHHHHHhc
Q psy9800 236 FPIFQVIIQ 244 (486)
Q Consensus 236 ~P~~~~IL~ 244 (486)
-|+++..-+
T Consensus 674 ~P~~~~w~~ 682 (1204)
T 3a6p_A 674 APVASIWLS 682 (1204)
T ss_dssp HHHHHHHSC
T ss_pred HHHHHHHcc
Confidence 666665554
No 69
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=41.82 E-value=1.6e+02 Score=25.52 Aligned_cols=75 Identities=11% Similarity=0.102 Sum_probs=45.0
Q ss_pred chhhh---hhHhhccCCcchhhHHHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHH
Q psy9800 74 PHLKQ---IFVLLFQRLSSSKTAKYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLV 150 (486)
Q Consensus 74 piLka---Ky~~~FRn~l~~~~llp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~ 150 (486)
+.+|. +.+-.+.+ ...++.+...|.+++.-|+..|+.++.++- + ++ .+..|.+
T Consensus 59 ~~vr~~a~~~L~~~~~----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~---~---------~~--------~~~~L~~ 114 (201)
T 3ltj_A 59 AWVRRAAADALGQIGD----ERAVEPLIKALKDEDGWVRQSAAVALGQIG---D---------ER--------AVEPLIK 114 (201)
T ss_dssp HHHHHHHHHHHHHHCC----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC---C---------GG--------GHHHHHH
T ss_pred HHHHHHHHHHHHhhCC----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC---c---------HH--------HHHHHHH
Confidence 55555 44444433 245788888888888888888888887641 1 11 1223333
Q ss_pred hhCCCCCCccHHHHHHHHHHHHHhhh
Q psy9800 151 IFTRPGSEENEYAMKCIMRSMSTLQD 176 (486)
Q Consensus 151 li~~~~~~eNeylmk~imRii~~~~e 176 (486)
++. .+|..+-....+.+..+++
T Consensus 115 ~l~----d~~~~vr~~a~~aL~~~~~ 136 (201)
T 3ltj_A 115 ALK----DEDWFVRIAAAFALGEIGD 136 (201)
T ss_dssp HTT----CSSHHHHHHHHHHHHHHTC
T ss_pred HHc----CCCHHHHHHHHHHHHHhCC
Confidence 443 3566777777777776654
No 70
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=40.69 E-value=1.7e+02 Score=26.75 Aligned_cols=82 Identities=7% Similarity=0.073 Sum_probs=48.1
Q ss_pred hhHHHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCccHHHHHHHHHH
Q psy9800 91 KTAKYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEENEYAMKCIMRS 170 (486)
Q Consensus 91 ~~llp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~eNeylmk~imRi 170 (486)
+..++.+..+|.+++..|+..|+.++.++-. . ... .+.++.-|.+.+.. .++..+-....+.
T Consensus 53 ~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~---~--------~~~----~~~l~~~L~~~~~~---d~~~~vr~~a~~a 114 (280)
T 1oyz_A 53 QDAVRLAIEFCSDKNYIRRDIGAFILGQIKI---C--------KKC----EDNVFNILNNMALN---DKSACVRATAIES 114 (280)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCC---C--------TTT----HHHHHHHHHHHHHH---CSCHHHHHHHHHH
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHhcc---c--------ccc----chHHHHHHHHHHhc---CCCHHHHHHHHHH
Confidence 4568999999999999999999999876521 1 111 22233333322222 3566777777777
Q ss_pred HHHhhhhhhchHHHHHHHHH
Q psy9800 171 MSTLQDKVVPYLSDLLFQLT 190 (486)
Q Consensus 171 i~~~~e~i~p~~~~l~~~L~ 190 (486)
+..++....++...+++.|.
T Consensus 115 L~~l~~~~~~~~~~~~~~L~ 134 (280)
T 1oyz_A 115 TAQRCKKNPIYSPKIVEQSQ 134 (280)
T ss_dssp HHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHhccCCcccHHHHHHHH
Confidence 77665433233334444433
No 71
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=39.47 E-value=46 Score=36.19 Aligned_cols=28 Identities=18% Similarity=0.112 Sum_probs=23.7
Q ss_pred HHHHHHhhccCCCCcHHHHHHHHHHHHHc
Q psy9800 93 AKYSKVSHLESAHPVVHSYASHAIDRVLV 121 (486)
Q Consensus 93 llp~l~~~L~~~~~vV~tyAA~aIerlL~ 121 (486)
++|++ +.|.|++.-++..||.||..|..
T Consensus 36 i~Pll-~~L~S~~~~~r~~A~~al~~l~~ 63 (684)
T 4gmo_A 36 ILPVL-KDLKSPDAKSRTTAAGAIANIVQ 63 (684)
T ss_dssp THHHH-HHHSSSCCSHHHHHHHHHHHHTT
T ss_pred HHHHH-HHcCCCCHHHHHHHHHHHHHHHc
Confidence 46655 67999999999999999998874
No 72
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=38.19 E-value=3e+02 Score=27.08 Aligned_cols=155 Identities=14% Similarity=0.103 Sum_probs=77.4
Q ss_pred HHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHH
Q psy9800 94 KYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEENEYAMKCIMRSMST 173 (486)
Q Consensus 94 lp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~eNeylmk~imRii~~ 173 (486)
+|.++++|.+++.-|+..||.|+..|-...++. + +..+.. ...+..|.+++.. ..++.+.+...+.+..
T Consensus 129 Ip~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~-~-----k~~i~~--~G~Ip~Lv~lL~~---~~~~~~~~~A~~aL~n 197 (354)
T 3nmw_A 129 MRALVAQLKSESEDLQQVIASVLRNLSWRADVN-S-----KKTLRE--VGSVKALMECALE---VKKESTLKSVLSALWN 197 (354)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHH-H-----HHHHHH--TTHHHHHHHHHHH---CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHH-H-----HHHHHH--CCCHHHHHHHHhc---CCCHHHHHHHHHHHHH
Confidence 999999999999999999999998774431111 1 222210 0123334443322 2334455544444443
Q ss_pred hhh---hhhchHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHh---cCchHHHHH-HHHhhHHHHHHhccc
Q psy9800 174 LQD---KVVPYLSDLLFQLTQRLAAAAKNPSKPNYNHFLFEAITLAIRIVCK---QNPEAVATF-EQALFPIFQVIIQQD 246 (486)
Q Consensus 174 ~~e---~i~p~~~~l~~~L~~il~~v~kNpsnp~f~hylFEsi~~lir~~~~---~~p~~~~~~-E~~L~P~~~~IL~~d 246 (486)
+.. +..+-... .......|....+++++.. .--+.|.-+.+++..+. .+++....+ +.-.+|++-..|+..
T Consensus 198 Ls~~~~~nk~~i~~-~~Gai~~Lv~lL~~~~~~~-~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~ 275 (354)
T 3nmw_A 198 LSAHCTENKADICA-VDGALAFLVGTLTYRSQTN-TLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH 275 (354)
T ss_dssp HHTTCHHHHHHHHH-STTHHHHHHHHTTCCCSSS-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCS
T ss_pred HHccChhhhHHHHH-hcCcHHHHHHHhccCCCcc-cHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCC
Confidence 322 22211110 0122223333444443310 01244444444454333 456655554 444788888888876
Q ss_pred cchhhhhHHHHHHHH
Q psy9800 247 TLEFLPYTFQILSLL 261 (486)
Q Consensus 247 v~EF~pYvfQIls~l 261 (486)
-.+....+--.|+-+
T Consensus 276 ~~~v~~~A~~aL~nL 290 (354)
T 3nmw_A 276 SLTIVSNACGTLWNL 290 (354)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHH
Confidence 556566444444444
No 73
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=37.80 E-value=2.5e+02 Score=28.37 Aligned_cols=156 Identities=6% Similarity=0.021 Sum_probs=84.7
Q ss_pred HHHHHhhccC-CCCcHHHHHHHHHHHHHcccCCCCCCcccccchh-hhhH--HHHHHHHHHhhCCCCCCccHHHHHHHHH
Q psy9800 94 KYSKVSHLES-AHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVL-APLA--ADLYKNLLVIFTRPGSEENEYAMKCIMR 169 (486)
Q Consensus 94 lp~l~~~L~~-~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l-~p~~--~~lL~~Lf~li~~~~~~eNeylmk~imR 169 (486)
++.++.+|.+ ++.-+...||.|+-.+-.-..+. ...+ +-.+ ...+..|.+++.. +++.+-+....
T Consensus 285 l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~-------~~~~~~~~v~~~~~l~~Lv~LL~~----~~~~v~~~A~~ 353 (457)
T 1xm9_A 285 IRTYLNLMGKSKKDATLEACAGALQNLTASKGLM-------SSGMSQLIGLKEKGLPQIARLLQS----GNSDVVRSGAS 353 (457)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSH-------HHHHHHHHHTTSCCHHHHHHHTTC----SCHHHHHHHHH
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcc-------hHHHHHHHHHHcCCchHHHHHHhC----CCHhHHHHHHH
Confidence 8888888876 45778888899999876533210 0111 1111 1234456666664 45666666666
Q ss_pred HHHHhhhhhhchHHHHHHHHHHHHHHHhcCCCCCcc-h-hHHHHHHHHHHHHHHhcCchHHHHH-HHHhhHHHHHHhccc
Q psy9800 170 SMSTLQDKVVPYLSDLLFQLTQRLAAAAKNPSKPNY-N-HFLFEAITLAIRIVCKQNPEAVATF-EQALFPIFQVIIQQD 246 (486)
Q Consensus 170 ii~~~~e~i~p~~~~l~~~L~~il~~v~kNpsnp~f-~-hylFEsi~~lir~~~~~~p~~~~~~-E~~L~P~~~~IL~~d 246 (486)
.+..+..+- .....+-.....-+.+...+++.+.- . .....+++++-.+ +..+++....+ |.-.+|.+..++..+
T Consensus 354 aL~nls~~~-~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni-~~~~~~~~~~i~~~g~l~~L~~L~~~~ 431 (457)
T 1xm9_A 354 LLSNMSRHP-LLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNL-MASQPQLAKQYFSSSMLNNIINLCRSS 431 (457)
T ss_dssp HHHHHHTSG-GGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHH-HTTCTHHHHHHCCHHHHHHHHHHHHCT
T ss_pred HHHHHhcCH-HHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHH-HhcCHHHHHHHHHcCCHHHHHHHHcCC
Confidence 666554432 22222222323333344444433211 1 2333444443333 45566655555 445778888888877
Q ss_pred -cchhhhhHHHHHHHHH
Q psy9800 247 -TLEFLPYTFQILSLLL 262 (486)
Q Consensus 247 -v~EF~pYvfQIls~ll 262 (486)
-.+-+..+.++|+.+.
T Consensus 432 ~~~~i~~~A~~~L~~~~ 448 (457)
T 1xm9_A 432 ASPKAAEAARLLLSDMW 448 (457)
T ss_dssp TCHHHHHHHHHHHHTTS
T ss_pred CcHHHHHHHHHHHHHHH
Confidence 6677777777776554
No 74
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=33.32 E-value=4.2e+02 Score=27.23 Aligned_cols=159 Identities=9% Similarity=0.005 Sum_probs=86.3
Q ss_pred HHHHHhhccCCC------------CcHHHHHHHHHHHHHcccCCCCCCcccccch----hhhhHHHH---HHHHHHhhCC
Q psy9800 94 KYSKVSHLESAH------------PVVHSYASHAIDRVLVMRSPNGQGTLVTADV----LAPLAADL---YKNLLVIFTR 154 (486)
Q Consensus 94 lp~l~~~L~~~~------------~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~----l~p~~~~l---L~~Lf~li~~ 154 (486)
+|.++++|.+++ .-++.+||.|+-.|..-+.+. +... +-+.++++ ...+.+++..
T Consensus 72 ~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 145 (458)
T 3nmz_A 72 LPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDD------KRGRREIRVLHLLEQIRAYCETCWEWQEA 145 (458)
T ss_dssp HHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSC------HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcch------hHHHHHHHHHHHHHHhhhhhHHHHHHHHh
Confidence 999999999743 489999999999988855321 1221 22223333 1334556655
Q ss_pred CC-CCc------cH-------HHHHHHHHHHHHhhhhhhchH--HHHHHHHHHHHHHH---hcCCCCCcchhHHHHHHHH
Q psy9800 155 PG-SEE------NE-------YAMKCIMRSMSTLQDKVVPYL--SDLLFQLTQRLAAA---AKNPSKPNYNHFLFEAITL 215 (486)
Q Consensus 155 ~~-~~e------Ne-------ylmk~imRii~~~~e~i~p~~--~~l~~~L~~il~~v---~kNpsnp~f~hylFEsi~~ 215 (486)
+. +.+ -| ...++++.+- ..++..... ...++.|...+..- -+.-.++.-....+++..+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls--~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~a 223 (458)
T 3nmz_A 146 HEPGMDQDKNPMPAPVEHQICPAVCVLMKLS--FDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMA 223 (458)
T ss_dssp TSSSSCCCSCC--CCCTTTTHHHHHHHHHHT--TSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred hccccccccCCccchhhHHHHHHHHHHHHhc--CCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHH
Confidence 42 111 11 5667777651 122222221 12445555544321 1110111112456777777
Q ss_pred HHHHHHhcCchHHHHH--HHHhhHHHHHHhccccchhhhhHHHHHHHH
Q psy9800 216 AIRIVCKQNPEAVATF--EQALFPIFQVIIQQDTLEFLPYTFQILSLL 261 (486)
Q Consensus 216 lir~~~~~~p~~~~~~--E~~L~P~~~~IL~~dv~EF~pYvfQIls~l 261 (486)
|-.. |..+++.-..+ ++-.+|++-..|..+-.+....+--.|+.|
T Consensus 224 L~nL-a~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nL 270 (458)
T 3nmz_A 224 LTNL-TFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNL 270 (458)
T ss_dssp HHHH-HTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHH-hCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 7776 55555444445 355679999999877667766555555444
No 75
>2ilr_A Protein FACE, fanconi anemia group E protein; antiparallel helical hairpin, helical repeat, FANC repeat, oncoprotein; 2.00A {Homo sapiens}
Probab=32.12 E-value=1.6e+02 Score=28.53 Aligned_cols=100 Identities=17% Similarity=0.308 Sum_probs=55.3
Q ss_pred HhcCchHHHHHHHHhhHHHHHHhccccchhhhhHHHHHHHHHhhCCCCCCChhHHH-hhhhhcCccccCCCCCccchhHH
Q psy9800 221 CKQNPEAVATFEQALFPIFQVIIQQDTLEFLPYTFQILSLLLEFRPRGSISAPYLE-LYPFLLSPVLWSRPGNIHPLVRL 299 (486)
Q Consensus 221 ~~~~p~~~~~~E~~L~P~~~~IL~~dv~EF~pYvfQIls~lle~~~~~~is~~y~~-L~~~Ll~p~lWe~~gnip~lvrl 299 (486)
|+.+|. +-.|..++|.++. .++=|-=-+++..+++-. .+++.+.. ++..+++ -.|.
T Consensus 119 ~k~~p~--a~~~all~PLL~~------~~~g~~Q~eLi~rlik~e---~l~p~~~~lll~~iL~-l~Wt----------- 175 (264)
T 2ilr_A 119 AAKYTY--PVCSALLDPVLQA------PGTGPAQTELLCCLVKME---SLEPDAQVLMLGQILE-LPWK----------- 175 (264)
T ss_dssp HHHSHH--HHHHHHHHHHHHS------TTCCHHHHHHHHHHHHCT---TSCHHHHHHHHHHHHH-SCCC-----------
T ss_pred HHhCcH--HHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhc---cCCHHHHHHHHHHHHh-ccch-----------
Confidence 566775 4456677787552 244454456677776531 36666666 4455543 2443
Q ss_pred HHHhhcccCccccccccchhHHHHHHHHHHHHH------HHHHHHHHhhc-----CCcchhHHHHHHHHHHHHHhhCh
Q psy9800 300 LRAFITKSEPSQFSATLKLNNVLGVFQKLIASK------IFVLLFQRLSS-----SKTAKYSKGLVTFLMFYVINMGA 366 (486)
Q Consensus 300 L~ayi~k~~~~~~~~~~~l~~ilgifqkli~sk------I~~lll~RLq~-----~kt~k~~k~~v~f~~~~~~~yg~ 366 (486)
|.++.+||.+++.| .+..+..++.. +|.-|| ..++..++.+||+
T Consensus 176 -------------------E~~~~Vlq~lL~~k~~L~~~~i~~Lv~~L~~~a~~~skSlkF----akLll~~itky~~ 230 (264)
T 2ilr_A 176 -------------------EETFLVLQSLLERQVEMTPEKFSVLMEKLCKKGLAATTSMAY----AKLMLTVMTKYQA 230 (264)
T ss_dssp -------------------HHHHHHHHHHHTTCCCCCHHHHHHHHHHHHC-----CCSHHH----HHHHHHHHHHTGG
T ss_pred -------------------HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhHHhhcccHH----HHHHHHHHHHhHH
Confidence 34444555555544 67777777752 344444 4455555566643
No 76
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=31.46 E-value=2.2e+02 Score=27.08 Aligned_cols=111 Identities=8% Similarity=0.043 Sum_probs=72.5
Q ss_pred hhHhhccCCcchhhHHHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCC
Q psy9800 79 IFVLLFQRLSSSKTAKYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSE 158 (486)
Q Consensus 79 Ky~~~FRn~l~~~~llp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~ 158 (486)
|-++.-++.--..+.++.+..+-.+++..|+-+-|--||-....+ . -++...+..|..+++.
T Consensus 40 ~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k-----------~---~l~~~~l~~L~~Ll~d---- 101 (257)
T 3gs3_A 40 QETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVK-----------V---ELLPHVINVVSMLLRD---- 101 (257)
T ss_dssp HHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC-----------G---GGHHHHHHHHHHHTTC----
T ss_pred HHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH-----------H---HHHHHHHHHHHHHHcC----
Confidence 444444554445566888888888888999999999888777332 1 2566777777777753
Q ss_pred ccHHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHH
Q psy9800 159 ENEYAMKCIMRSMSTLQDKVVPYLSDLLFQLTQRLAAAAKNPSKPNYNHFLFEAITLAIRIVC 221 (486)
Q Consensus 159 eNeylmk~imRii~~~~e~i~p~~~~l~~~L~~il~~v~kNpsnp~f~hylFEsi~~lir~~~ 221 (486)
++.-++|.+..... .+ +. ..+..+++||..+....-+++.+..+-..++
T Consensus 102 ~d~~V~K~~I~~~~----~i---Y~-------~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il 150 (257)
T 3gs3_A 102 NSAQVIKRVIQACG----SI---YK-------NGLQYLCSLMEPGDSAEQAWNILSLIKAQIL 150 (257)
T ss_dssp SCHHHHHHHHHHHH----HH---HH-------HHHHHHTTSSSCCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH----HH---HH-------HHHHHHhcCCCCcchHHHHHHHHHHHHHHHH
Confidence 44445444332111 11 11 2366778898877667889999988877654
No 77
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=31.12 E-value=3.3e+02 Score=25.34 Aligned_cols=29 Identities=28% Similarity=0.092 Sum_probs=24.8
Q ss_pred HHHHHhhccCCCC--cHHHHHHHHHHHHHcc
Q psy9800 94 KYSKVSHLESAHP--VVHSYASHAIDRVLVM 122 (486)
Q Consensus 94 lp~l~~~L~~~~~--vV~tyAA~aIerlL~~ 122 (486)
+|.++++|.+++. -+...||.+|..+-..
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~ 40 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQ 40 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcC
Confidence 8999999999887 8999999999765543
No 78
>3bww_A Protein of unknown function DUF692/COG3220; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.20A {Haemophilus somnus}
Probab=30.37 E-value=21 Score=35.42 Aligned_cols=42 Identities=21% Similarity=0.421 Sum_probs=22.5
Q ss_pred HHHhhCCCCCCChhHHHhhhhhcC------ccccCCCCCccchhHHHHH
Q psy9800 260 LLLEFRPRGSISAPYLELYPFLLS------PVLWSRPGNIHPLVRLLRA 302 (486)
Q Consensus 260 ~lle~~~~~~is~~y~~L~~~Ll~------p~lWe~~gnip~lvrlL~a 302 (486)
++++.+.. ++++..|+|+...+. |++-|+++|||++..|+.-
T Consensus 238 lliDTH~~-~V~~~VW~Ll~~~~~r~g~~~ptllErD~niP~~~~L~~E 285 (307)
T 3bww_A 238 LLVDTHGE-NVKGTVWDLLEYTYARLSHMPPTLLERDFNFPPFEKLCKE 285 (307)
T ss_dssp -------------HHHHHHHHHHTTCSSBCCEEECC---CCCHHHHHHH
T ss_pred eeEECCCC-CCcHHHHHHHHHHHHhcCCCCceEEEecCCCCCHHHHHHH
Confidence 56777775 899999999998865 6888999999998877753
No 79
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=29.90 E-value=4.7e+02 Score=26.81 Aligned_cols=155 Identities=14% Similarity=0.106 Sum_probs=80.0
Q ss_pred HHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHH
Q psy9800 94 KYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEENEYAMKCIMRSMST 173 (486)
Q Consensus 94 lp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~eNeylmk~imRii~~ 173 (486)
+|.++++|.+++.-|+..|+.||..|-...++. .+..+.- ...+..|.+++.. ..++.+.+...+.+..
T Consensus 245 Ip~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~------~k~~I~~--~GaI~~LV~lLl~---s~~~~v~~~A~~aL~n 313 (458)
T 3nmz_A 245 MRALVAQLKSESEDLQQVIASVLRNLSWRADVN------SKKTLRE--VGSVKALMECALE---VKKESTLKSVLSALWN 313 (458)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHH------HHHHHHH--TTHHHHHHHHHTT---CCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHH------HHHHHHH--cCCHHHHHHHHhc---CCCHHHHHHHHHHHHH
Confidence 999999999999999999999998763321111 1222220 1234445554433 2345566555454443
Q ss_pred hhh---hhhchHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHh---cCchHHHHH-HHHhhHHHHHHhccc
Q psy9800 174 LQD---KVVPYLSDLLFQLTQRLAAAAKNPSKPNYNHFLFEAITLAIRIVCK---QNPEAVATF-EQALFPIFQVIIQQD 246 (486)
Q Consensus 174 ~~e---~i~p~~~~l~~~L~~il~~v~kNpsnp~f~hylFEsi~~lir~~~~---~~p~~~~~~-E~~L~P~~~~IL~~d 246 (486)
+.. +..+-... ...-...+....+++++.. .--+.+.-+.+++..+. .+++....+ |.-.+|++-..|...
T Consensus 314 Ls~~~~~nk~~I~~-~~Gal~~Lv~LL~~~~~~~-~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~ 391 (458)
T 3nmz_A 314 LSAHCTENKADICA-VDGALAFLVGTLTYRSQTN-TLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH 391 (458)
T ss_dssp HHHHCHHHHHHHHH-STTHHHHHHHHTTCCCSSS-TTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCS
T ss_pred HccCCHHHHHHHHH-hcCcHHHHHHHhcCCCCcc-hHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCC
Confidence 322 22211110 0112223334444444321 00133433334444232 466655554 455788888888776
Q ss_pred cchhhhhHHHHHHHH
Q psy9800 247 TLEFLPYTFQILSLL 261 (486)
Q Consensus 247 v~EF~pYvfQIls~l 261 (486)
-.+....+--.|+-+
T Consensus 392 ~~~v~~~A~~aL~nL 406 (458)
T 3nmz_A 392 SLTIVSNACGTLWNL 406 (458)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHH
Confidence 656666555555554
No 80
>2d5u_A N-glycanase 1; pngase, hydrolase; NMR {Mus musculus} SCOP: d.314.1.1
Probab=28.86 E-value=55 Score=28.03 Aligned_cols=26 Identities=19% Similarity=0.192 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCCcch
Q psy9800 181 YLSDLLFQLTQRLAAAAKNPSKPNYN 206 (486)
Q Consensus 181 ~~~~l~~~L~~il~~v~kNpsnp~f~ 206 (486)
-....++.|..++..+.+||+||.|-
T Consensus 32 ~~~~a~~tL~kil~NIl~~P~e~KyR 57 (124)
T 2d5u_A 32 TFLEASKLLLTYADNILRNPSDEKYR 57 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCGGGS
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccce
Confidence 35567788888999999999999875
No 81
>2ccq_A P97, peptide N-glycanase homolog; glycoprotein; 1.6A {Homo sapiens} SCOP: d.314.1.1 PDB: 2hpl_A 2hpj_A 2cm0_A
Probab=28.73 E-value=58 Score=26.70 Aligned_cols=25 Identities=16% Similarity=0.207 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcch
Q psy9800 182 LSDLLFQLTQRLAAAAKNPSKPNYN 206 (486)
Q Consensus 182 ~~~l~~~L~~il~~v~kNpsnp~f~ 206 (486)
....++.|..++..+.+||++|+|-
T Consensus 18 ~~~a~~tL~k~l~Nil~~P~e~KyR 42 (99)
T 2ccq_A 18 FLEASKLLLTYADNILRNPNDEKYR 42 (99)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCGGGG
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccc
Confidence 4566777888899999999999875
No 82
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=27.98 E-value=5.1e+02 Score=27.62 Aligned_cols=121 Identities=16% Similarity=0.120 Sum_probs=72.0
Q ss_pred hhHHHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCC----CccHHHHHH
Q psy9800 91 KTAKYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGS----EENEYAMKC 166 (486)
Q Consensus 91 ~~llp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~----~eNeylmk~ 166 (486)
+..+|.|+++|.+++..|...|+.||..|-.-.+ + ++.| -...+..|..++..+.. ..++.+...
T Consensus 354 ~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~---~-----~~~I---~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~ 422 (584)
T 3l6x_A 354 EKALSAIADLLTNEHERVVKAASGALRNLAVDAR---N-----KELI---GKHAIPNLVKNLPGGQQNSSWNFSEDTVIS 422 (584)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCS---C-----HHHH---HHHHHHHHHHTSSSSSCSGGGTCCHHHHHH
T ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChh---H-----HHHH---HhCCHHHHHHHhcCCcccccccchHHHHHH
Confidence 3449999999999999999999999998765332 2 4444 34567788888865321 125677777
Q ss_pred HHHHHHHhhhhhhchHHHHHH-HHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHhcCch
Q psy9800 167 IMRSMSTLQDKVVPYLSDLLF-QLTQRLAAAAKNPSKPNYNHFLFEAITLAIRIVCKQNPE 226 (486)
Q Consensus 167 imRii~~~~e~i~p~~~~l~~-~L~~il~~v~kNpsnp~f~hylFEsi~~lir~~~~~~p~ 226 (486)
..+++..+-..-......+.+ ..+..+..+.++.+ +....-+.-+.++...+ .+.+
T Consensus 423 a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~---~~~~v~k~Aa~vL~nl~-~~~e 479 (584)
T 3l6x_A 423 ILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGN---RSEKEVRAAALVLQTIW-GYKE 479 (584)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSS---SCHHHHHHHHHHHHHHH-TSHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCC---CChHHHHHHHHHHHHHH-cCHH
Confidence 777775321111111222222 23334445555532 34457777777777633 4544
No 83
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=26.75 E-value=6e+02 Score=27.63 Aligned_cols=54 Identities=19% Similarity=0.244 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhcCchH--HHHHHHHhhHHHHHHhccccc----hhhhhHHHHHHHHHhhCC
Q psy9800 211 EAITLAIRIVCKQNPEA--VATFEQALFPIFQVIIQQDTL----EFLPYTFQILSLLLEFRP 266 (486)
Q Consensus 211 Esi~~lir~~~~~~p~~--~~~~E~~L~P~~~~IL~~dv~----EF~pYvfQIls~lle~~~ 266 (486)
|++.++... +.++++. +-.||++. |.+-.|++.+.. ..+.-++.++.-|+..++
T Consensus 185 eallLL~~L-t~~n~~iQklVAFEnaF-e~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~ 244 (651)
T 3grl_A 185 DGVLLLQAL-TRSNGAIQKIVAFENAF-ERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNN 244 (651)
T ss_dssp HHHHHHHHH-HTTCHHHHHHHHHTTHH-HHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHH-hcCCHHHHHHHHHhccH-HHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCH
Confidence 888888888 5666654 44556654 666666666554 788899999999987764
No 84
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=25.80 E-value=3.1e+02 Score=23.43 Aligned_cols=58 Identities=10% Similarity=0.082 Sum_probs=39.9
Q ss_pred HHHHHHhhccccCCCCCCCCCccccchhhh---hhHhhccCCcchhhHHHHHHhhccCCCCcHHHHHHHHHHHH
Q psy9800 49 EDFAQQHIFPELNKPDELCPNELLSPHLKQ---IFVLLFQRLSSSKTAKYSKVSHLESAHPVVHSYASHAIDRV 119 (486)
Q Consensus 49 ~~ff~~~V~PeL~~~~~~~~~~~~~piLka---Ky~~~FRn~l~~~~llp~l~~~L~~~~~vV~tyAA~aIerl 119 (486)
...-..+++..|.+++ +..|. +.+..+.+ ...++.+++.|.+++.-|+..|+.++.++
T Consensus 12 ~~~~~~~~i~~L~~~~---------~~vr~~A~~~L~~~~~----~~~~~~L~~~l~~~~~~vr~~a~~~L~~~ 72 (201)
T 3ltj_A 12 DPEKVEMYIKNLQDDS---------YYVRRAAAYALGKIGD----ERAVEPLIKALKDEDAWVRRAAADALGQI 72 (201)
T ss_dssp CHHHHHHHHHHTTCSC---------HHHHHHHHHHHHHHCC----GGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHhcCCC---------HHHHHHHHHHHHhcCC----hhHHHHHHHHHcCCCHHHHHHHHHHHHhh
Confidence 3444556666777665 55555 44444433 34588889999999999999999888765
No 85
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=25.45 E-value=6.4e+02 Score=26.86 Aligned_cols=157 Identities=12% Similarity=0.078 Sum_probs=94.9
Q ss_pred HHHHHhhcc-CCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhH--HHHHHHHHHhhCCCCCCccHHHHHHHHHH
Q psy9800 94 KYSKVSHLE-SAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLA--ADLYKNLLVIFTRPGSEENEYAMKCIMRS 170 (486)
Q Consensus 94 lp~l~~~L~-~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~--~~lL~~Lf~li~~~~~~eNeylmk~imRi 170 (486)
++.++.+|. +.+.-+.-.||.||..|-.-+.+- ...++-.+ ...+..|.+++.. +++.+.+...+.
T Consensus 310 v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~-------~~~~~~~v~~~~glp~Lv~LL~s----~~~~v~~~A~~a 378 (584)
T 3l6x_A 310 VRIYISLLKESKTPAILEASAGAIQNLCAGRWTY-------GRYIRSALRQEKALSAIADLLTN----EHERVVKAASGA 378 (584)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHH-------HHHHHHHHTSHHHHHHHHHGGGC----SCHHHHHHHHHH
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccc-------cHHHHHHHHHcCcHHHHHHHHcC----CCHHHHHHHHHH
Confidence 788888886 467889999999999887633210 11121111 2346667777764 567788888888
Q ss_pred HHHhhhhhhchHHHHHHHHHHHHHHHhcCCCC-Cc---chhHHHHHHHHHHHHHHhcCchHHHHH-HHHhhHHHHHHhcc
Q psy9800 171 MSTLQDKVVPYLSDLLFQLTQRLAAAAKNPSK-PN---YNHFLFEAITLAIRIVCKQNPEAVATF-EQALFPIFQVIIQQ 245 (486)
Q Consensus 171 i~~~~e~i~p~~~~l~~~L~~il~~v~kNpsn-p~---f~hylFEsi~~lir~~~~~~p~~~~~~-E~~L~P~~~~IL~~ 245 (486)
+..+...-... ..+-......+.+...+++. |. -.-.+..+++++-.+ +..+++....+ +.-.+|.+-.+|..
T Consensus 379 L~nLs~~~~~~-~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL-~a~~~~~~~~I~~~g~I~~Lv~LL~s 456 (584)
T 3l6x_A 379 LRNLAVDARNK-ELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEV-IAENLEAAKKLRETQGIEKLVLINKS 456 (584)
T ss_dssp HHHHHTTCSCH-HHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHTTHHHHHHHHHTC
T ss_pred HHHHhCChhHH-HHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHH-hcCCHHHHHHHHHCCChHHHHHHHhC
Confidence 87776543221 12222222333344444432 21 123355566666555 45566666555 56789999999986
Q ss_pred c--cchhhhhHHHHHHHHHh
Q psy9800 246 D--TLEFLPYTFQILSLLLE 263 (486)
Q Consensus 246 d--v~EF~pYvfQIls~lle 263 (486)
. ...-..++.++|+-|..
T Consensus 457 ~~~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 457 GNRSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp SSSCHHHHHHHHHHHHHHHT
T ss_pred CCCChHHHHHHHHHHHHHHc
Confidence 4 55677788888887763
No 86
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=24.27 E-value=2.1e+02 Score=26.23 Aligned_cols=141 Identities=8% Similarity=0.055 Sum_probs=81.5
Q ss_pred hhccCCcchhhHHHHHHhhccC------CCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCC
Q psy9800 82 LLFQRLSSSKTAKYSKVSHLES------AHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRP 155 (486)
Q Consensus 82 ~~FRn~l~~~~llp~l~~~L~~------~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~ 155 (486)
-.-|+.-...+++|.+++++.+ .+..+=.|.-..++-++..+ .-.+.|++-+++.-++.++-..
T Consensus 30 ~sL~~D~gL~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~----------~l~lepYlH~LipsvLtCll~k 99 (196)
T 4atg_A 30 ECLEKESGLQQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNK----------HVFIDPYLHQILPSLLTCVIGK 99 (196)
T ss_dssp HHHHHCSSCTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCT----------TCCCGGGHHHHHHHHHHHHHCT
T ss_pred HHHhcCCChhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCC----------CCChHHHHHHHHHHHHHHHHhc
Confidence 4455555566666666665543 13333334444445455422 3467899999999998888322
Q ss_pred CCCc---cHHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHhcCchHHHHHH
Q psy9800 156 GSEE---NEYAMKCIMRSMSTLQDKVVPYLSDLLFQLTQRLAAAAKNPSKPNYNHFLFEAITLAIRIVCKQNPEAVATFE 232 (486)
Q Consensus 156 ~~~e---Neylmk~imRii~~~~e~i~p~~~~l~~~L~~il~~v~kNpsnp~f~hylFEsi~~lir~~~~~~p~~~~~~E 232 (486)
.-.. =||--+.+-.|+..+++.- ..+-++++..+..+-.||..|.-.|| -|+..+-.. -+ ..++
T Consensus 100 ~l~~~~LRd~AA~lL~~I~~~~~~~y----~~L~~RI~~tl~k~l~dp~~~l~t~Y--GAi~GL~~l----G~---~~vr 166 (196)
T 4atg_A 100 SIVDDDVRKMSADIVKYIYDTYSRSY----KTLAPRVLKTLKGVWMDPNRSEDSQY--GALYCLSIL----SK---NVVN 166 (196)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHTTTS----TTHHHHHHHHHHHHHTCTTSCHHHHH--HHHHHHHHH----CH---HHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHHhCccC----chHHHHHHHHHHHHHcCCCCChHHHH--HHHHHHHHh----HH---HHHH
Confidence 1111 1355555555555555433 35567777788888889998876655 333333333 12 3445
Q ss_pred HHhhHHHHHHhcc
Q psy9800 233 QALFPIFQVIIQQ 245 (486)
Q Consensus 233 ~~L~P~~~~IL~~ 245 (486)
..++|-+..+...
T Consensus 167 ~~llP~l~~~~~~ 179 (196)
T 4atg_A 167 TVIREHAEEYKRT 179 (196)
T ss_dssp THHHHHHHHHHHH
T ss_pred HhhhcCHHHHHHH
Confidence 5677877766644
No 87
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=23.76 E-value=5.9e+02 Score=25.85 Aligned_cols=132 Identities=14% Similarity=0.163 Sum_probs=74.2
Q ss_pred HHHHHHHhhCCCCCCccHHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHhc
Q psy9800 144 LYKNLLVIFTRPGSEENEYAMKCIMRSMSTLQDKVVPYLSDLLFQLTQRLAAAAKNPSKPNYNHFLFEAITLAIRIVCKQ 223 (486)
Q Consensus 144 lL~~Lf~li~~~~~~eNeylmk~imRii~~~~e~i~p~~~~l~~~L~~il~~v~kNpsnp~f~hylFEsi~~lir~~~~~ 223 (486)
.+.+|+.+++.++..|=|++-..+-||...+- .+-.-+-..+.+++.+..-+...+.----+.|.+|.+|+.-.-.
T Consensus 175 Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~----~~R~~Irk~i~nif~~fiye~e~~~GIaeLLeilgsIIngfa~P 250 (392)
T 2jak_A 175 FVLQLLELFDSEDPRERDFLKTTLHRIYGKFL----GLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALP 250 (392)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSS
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhccCCC
Confidence 34556666666666676777777777765443 33334455556666666665544433356889999998872111
Q ss_pred -CchHHHHHHHHhhHHHHHHhccccchhhhhHHHHHHHHHhhCCCCCCChhHHHhhhhhcCccccCC
Q psy9800 224 -NPEAVATFEQALFPIFQVIIQQDTLEFLPYTFQILSLLLEFRPRGSISAPYLELYPFLLSPVLWSR 289 (486)
Q Consensus 224 -~p~~~~~~E~~L~P~~~~IL~~dv~EF~pYvfQIls~lle~~~~~~is~~y~~L~~~Ll~p~lWe~ 289 (486)
..|...-+..+|+|... .+....|.+-.-.++.+.++-.++ +.+ ..+.-|+. -|-.
T Consensus 251 LKeehk~Fl~~vLlPLhk---~~~l~~y~~qL~ycv~qf~eKDp~--L~~---~vi~~LLk--~WP~ 307 (392)
T 2jak_A 251 LKEEHKIFLLKVLLPLHK---VKSLSVYHPQLAYCVVQFLEKDST--LTE---PVVMALLK--YWPK 307 (392)
T ss_dssp CCHHHHHHHHHTTGGGGT---SGGGGGTHHHHHHHHHHHHHHCGG--GHH---HHHHHHHH--SSCS
T ss_pred CcHHHHHHHHHHhHhhcc---CCcHHHhHHHHHHHHHHHHhcCch--hHH---HHHHHHHH--hCCC
Confidence 22444446788888632 233444555333444555555553 333 33444554 6765
No 88
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=22.59 E-value=6.1e+02 Score=25.61 Aligned_cols=115 Identities=13% Similarity=0.075 Sum_probs=77.9
Q ss_pred hhhh-hhHhhccCCcchhhHHHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhC
Q psy9800 75 HLKQ-IFVLLFQRLSSSKTAKYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFT 153 (486)
Q Consensus 75 iLka-Ky~~~FRn~l~~~~llp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~ 153 (486)
.|+- +-++.+|+.--.++.+|.++.+-.+++.-|+-+.|--||-....+ . -++...+..|..+++
T Consensus 45 ~L~q~~EL~l~~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~-----------~---el~~~~l~~L~~LL~ 110 (386)
T 3o2t_A 45 VLKQVQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRD-----------I---ELLLKLIANLNMLLR 110 (386)
T ss_dssp HHHHHHHHHHTTCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC-----------G---GGHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHH-----------H---HHHHHHHHHHHHHHc
Confidence 3444 666667887777778999999999999999999999998777522 1 235667777777775
Q ss_pred CCCCCccHHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHH
Q psy9800 154 RPGSEENEYAMKCIMRSMSTLQDKVVPYLSDLLFQLTQRLAAAAKNPSKPNYNHFLFEAITLAIRIVC 221 (486)
Q Consensus 154 ~~~~~eNeylmk~imRii~~~~e~i~p~~~~l~~~L~~il~~v~kNpsnp~f~hylFEsi~~lir~~~ 221 (486)
. ++.-++|.+.-... .+-| ..+.-+++||.++.-..-+|+.+..+-..++
T Consensus 111 d----~d~~V~K~~I~~~t----slYp----------l~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il 160 (386)
T 3o2t_A 111 D----ENVNVVKKAILTMT----QLYK----------VALQWMVKSRVISELQEACWDMVSAMAGDII 160 (386)
T ss_dssp C----SSHHHHHHHHHHHH----HHHH----------HHHHHHHHC-CCCHHHHHHHHHHHHHHHHHH
T ss_pred C----CCHHHHHHHHHHHH----HHHH----------HHHHHHhcCCCcchhHHHHHHHHHHHHHHHH
Confidence 3 55555554432221 2222 1355678898877666789999988877644
No 89
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=22.47 E-value=5e+02 Score=26.48 Aligned_cols=132 Identities=14% Similarity=0.154 Sum_probs=79.3
Q ss_pred HHHHHHHhhCCCCCCccHHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHhc
Q psy9800 144 LYKNLLVIFTRPGSEENEYAMKCIMRSMSTLQDKVVPYLSDLLFQLTQRLAAAAKNPSKPNYNHFLFEAITLAIRIVCKQ 223 (486)
Q Consensus 144 lL~~Lf~li~~~~~~eNeylmk~imRii~~~~e~i~p~~~~l~~~L~~il~~v~kNpsnp~f~hylFEsi~~lir~~~~~ 223 (486)
.+.+|+.+++.++..|=|++-..+.||-..+- .+-.-+-..+.+++.+..-......----+.|.+|.+|+.-.-.
T Consensus 130 Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~----~~R~~Irk~innif~~fiye~e~~~GIaeLLeilgsIinGfa~P 205 (403)
T 3fga_B 130 FVLQLLELFDSEDPRERDFLKTTLHRIYGKFL----GLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALP 205 (403)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCH----HHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSS
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccCCC
Confidence 45678888888887888899998988876543 23334445566677666555433222235899999999972112
Q ss_pred -CchHHHHHHHHhhHHHHHHhccccchhhhhHHHHHHHHHhhCCCCCCChhHHHhhhhhcCccccCC
Q psy9800 224 -NPEAVATFEQALFPIFQVIIQQDTLEFLPYTFQILSLLLEFRPRGSISAPYLELYPFLLSPVLWSR 289 (486)
Q Consensus 224 -~p~~~~~~E~~L~P~~~~IL~~dv~EF~pYvfQIls~lle~~~~~~is~~y~~L~~~Ll~p~lWe~ 289 (486)
..|...-+..+|+|.- -.+.+..|.|-...++.+.++-.|+ +.+ ..+..|+. -|-.
T Consensus 206 Lkeehk~fl~~vLlPLH---k~~~~~~y~~qL~ycv~qf~eKDp~--L~~---~vi~~LLk--~WP~ 262 (403)
T 3fga_B 206 LKEEHKIFLLKVLLPLH---KVKSLSVYHPQLAYCVVQFLEKDST--LTE---PVVMALLK--YWPK 262 (403)
T ss_dssp CCHHHHHHHHHTTTGGG---GSTTGGGTHHHHHHHHHHHHHHCGG--GHH---HHHHHHHH--TCCS
T ss_pred chHHHHHHHHHHHHHHH---cCCcchhhHHHHHHHHHHHHHhCch--hHH---HHHHHHHH--hCCC
Confidence 2244444678888862 2234445656445555566666653 333 23444454 6765
No 90
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=22.20 E-value=6.8e+02 Score=27.83 Aligned_cols=228 Identities=10% Similarity=0.064 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHhhccccccccccc-ccccccHHHHHHHhhccccCCCCCCCCCccccchhhhhhHhhccCCcchhhH-
Q psy9800 16 KYKDTAIYLVTSLASQGSTVKHGTTK-SSTLVNLEDFAQQHIFPELNKPDELCPNELLSPHLKQIFVLLFQRLSSSKTA- 93 (486)
Q Consensus 16 r~KD~Ai~Lv~sla~~~~t~~~Gvt~-~n~lv~v~~ff~~~V~PeL~~~~~~~~~~~~~piLkaKy~~~FRn~l~~~~l- 93 (486)
+......|=+.++=+.......-.+. -..+..+-.|-..| .|+-...+. ++.+.-++..||...-.+.=
T Consensus 388 ~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~-~p~~~~~d~--------~~~~~~~v~~~~~~~l~eaGv 458 (778)
T 3opb_A 388 QKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXX-XPAADKVGA--------EKAAKEDILLFNEKYILRTEL 458 (778)
T ss_dssp TCCTTHHHHHHHHHHHTTCCCCCCCCCCC-------------------CCT--------HHHHHHHHHHHHHHHTTTTTH
T ss_pred CCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhcccc-CcccCcccc--------cccchHHHHHHHHHHHHHCcC
Q ss_pred HHHHHhhccCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCc---cHHHHHHHHHH
Q psy9800 94 KYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEE---NEYAMKCIMRS 170 (486)
Q Consensus 94 lp~l~~~L~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~e---Neylmk~imRi 170 (486)
+|.++.++.+++..++.-|+.+|-.+-.-++. +..+... ..+..|+.++......+ -+....+++|+
T Consensus 459 Ip~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~--------R~~lvqq--Gal~~LL~lL~s~~~~~~~~k~~AA~ALArL 528 (778)
T 3opb_A 459 ISFLKREMHNLSPNCKQQVVRIIYNITRSKNF--------IPQLAQQ--GAVKIILEYLANKQDIGEPIRILGCRALTRM 528 (778)
T ss_dssp HHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGG--------HHHHHHT--THHHHHHHHTTCC---CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH--------HHHHHHC--CCHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Q ss_pred HHHhhhhhhchHHHHHHHHHHHHHHHhcCCCCC---------cchhHHHHHHHHHHHHHHhcCc---hHHHHHHHH--hh
Q psy9800 171 MSTLQDKVVPYLSDLLFQLTQRLAAAAKNPSKP---------NYNHFLFEAITLAIRIVCKQNP---EAVATFEQA--LF 236 (486)
Q Consensus 171 i~~~~e~i~p~~~~l~~~L~~il~~v~kNpsnp---------~f~hylFEsi~~lir~~~~~~p---~~~~~~E~~--L~ 236 (486)
...-...++=-....+.-+-..+..+..+|..+ .-.--.|||+.+|-..+..+++ +.-..+-.. .+
T Consensus 529 lis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~ 608 (778)
T 3opb_A 529 LIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYW 608 (778)
T ss_dssp HHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHH
T ss_pred HhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHH
Q ss_pred HHHHHHhccccchhhhhHHHHHHHHH
Q psy9800 237 PIFQVIIQQDTLEFLPYTFQILSLLL 262 (486)
Q Consensus 237 P~~~~IL~~dv~EF~pYvfQIls~ll 262 (486)
|.+...|..+-...--.+.+.++-|.
T Consensus 609 ~~L~~LL~s~n~~VrrAA~elI~NL~ 634 (778)
T 3opb_A 609 STIENLMLDENVPLQRSTLELISNMM 634 (778)
T ss_dssp HHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHh
No 91
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=21.74 E-value=93 Score=25.40 Aligned_cols=28 Identities=21% Similarity=0.252 Sum_probs=17.7
Q ss_pred hHHHHHHhhccCCCCcHHHHHHHHHHHH
Q psy9800 92 TAKYSKVSHLESAHPVVHSYASHAIDRV 119 (486)
Q Consensus 92 ~llp~l~~~L~~~~~vV~tyAA~aIerl 119 (486)
..++.+...|.|++.-|+..|+.++.++
T Consensus 73 ~a~~~L~~~L~d~~~~VR~~A~~aL~~~ 100 (131)
T 1te4_A 73 RAVEPLIKLLEDDSGFVRSGAARSLEQI 100 (131)
T ss_dssp HHHHHHHHHHHHCCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 3466666666666666666666666654
No 92
>2ca5_A MXIH; transport protein, type III secretion system, needle complex, protein transport, virulence; 2.10A {Shigella flexneri} SCOP: a.2.20.1 PDB: 2v6l_0 3j0r_A
Probab=21.61 E-value=58 Score=26.12 Aligned_cols=28 Identities=36% Similarity=0.300 Sum_probs=21.2
Q ss_pred hhhchHHHHHHHHHHHHHHHhcCCCCCc
Q psy9800 177 KVVPYLSDLLFQLTQRLAAAAKNPSKPN 204 (486)
Q Consensus 177 ~i~p~~~~l~~~L~~il~~v~kNpsnp~ 204 (486)
..-.-+..+-+.+...+....+|||||.
T Consensus 18 ~f~~ga~~~~~~v~~Ai~~L~~~PsnPa 45 (85)
T 2ca5_A 18 TFDDGTQTLQGELTLALDKLAKNPSNPQ 45 (85)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 3334466777888889999999999993
No 93
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=21.05 E-value=2.8e+02 Score=23.99 Aligned_cols=27 Identities=19% Similarity=0.179 Sum_probs=15.5
Q ss_pred HHHHHHhhccCCCCcHHHHHHHHHHHH
Q psy9800 93 AKYSKVSHLESAHPVVHSYASHAIDRV 119 (486)
Q Consensus 93 llp~l~~~L~~~~~vV~tyAA~aIerl 119 (486)
.++.+...|.+++.-|+..|+.++.++
T Consensus 82 ~~~~L~~~l~~~~~~vr~~a~~aL~~~ 108 (211)
T 3ltm_A 82 AVEPLIKALKDEDGWVRQSAAVALGQI 108 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 355555556666656666666655543
No 94
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=20.32 E-value=5e+02 Score=25.44 Aligned_cols=156 Identities=11% Similarity=0.050 Sum_probs=83.5
Q ss_pred HHHHHhhc-cCCCCcHHHHHHHHHHHHHcccCCCCCCcccccchhhhhHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHH
Q psy9800 94 KYSKVSHL-ESAHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEENEYAMKCIMRSMS 172 (486)
Q Consensus 94 lp~l~~~L-~~~~~vV~tyAA~aIerlL~~k~~~~~~~~~~~~~l~p~~~~lL~~Lf~li~~~~~~eNeylmk~imRii~ 172 (486)
+|.++++| .+++.-+...|+.|+-.|-...+. + +..+.- ....+.-|.+++..+...++..+.+....++.
T Consensus 172 Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~--n-----k~~i~~-~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~ 243 (354)
T 3nmw_A 172 VKALMECALEVKKESTLKSVLSALWNLSAHCTE--N-----KADICA-VDGALAFLVGTLTYRSQTNTLAIIESGGGILR 243 (354)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHH--H-----HHHHHH-STTHHHHHHHHTTCCCSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHccChh--h-----hHHHHH-hcCcHHHHHHHhccCCCcccHHHHHHHHHHHH
Confidence 99999975 567788888999999877652221 1 222210 12344555566654322211123333333332
Q ss_pred Hhh------hhhhchH--HHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHhcCchHHHHH-HHHhhHHHHHHh
Q psy9800 173 TLQ------DKVVPYL--SDLLFQLTQRLAAAAKNPSKPNYNHFLFEAITLAIRIVCKQNPEAVATF-EQALFPIFQVII 243 (486)
Q Consensus 173 ~~~------e~i~p~~--~~l~~~L~~il~~v~kNpsnp~f~hylFEsi~~lir~~~~~~p~~~~~~-E~~L~P~~~~IL 243 (486)
.+. ++..... ...++.| ....++++. .-.-++.++|-.. +..+++....+ +.-.+|++..+|
T Consensus 244 nLs~~~a~~~~~~~~i~~~g~i~~L----v~lL~~~~~----~v~~~A~~aL~nL-a~~~~~~~~~i~~~G~i~~Lv~LL 314 (354)
T 3nmw_A 244 NVSSLIATNEDHRQILRENNCLQTL----LQHLKSHSL----TIVSNACGTLWNL-SARNPKDQEALWDMGAVSMLKNLI 314 (354)
T ss_dssp HHHHHHTTCHHHHHHHHTTTHHHHH----HHHTTCSCH----HHHHHHHHHHHHH-TSSCHHHHHHHHHTTHHHHHHTTT
T ss_pred HHHhhccCCHHHHHHHHHcCCHHHH----HHHHcCCCh----HHHHHHHHHHHHH-hCCCHHHHHHHHHCCCHHHHHHHH
Confidence 222 1211111 0123333 333444432 1344555655555 44466655555 556789999999
Q ss_pred ccccchhhhhHHHHHHHHHhhCC
Q psy9800 244 QQDTLEFLPYTFQILSLLLEFRP 266 (486)
Q Consensus 244 ~~dv~EF~pYvfQIls~lle~~~ 266 (486)
+..-.+....+-..|+-|...++
T Consensus 315 ~s~~~~i~~~A~~aL~nL~~~~~ 337 (354)
T 3nmw_A 315 HSKHKMIAMGSAAALRNLMANRP 337 (354)
T ss_dssp TCSSHHHHHHHHHHHHHHHTTCC
T ss_pred hCCCHHHHHHHHHHHHHHHcCCH
Confidence 87766777877788888876544
Done!